<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" article-type="review-article" dtd-version="2.3" xml:lang="EN">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Water</journal-id>
<journal-title>Frontiers in Water</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Water</abbrev-journal-title>
<issn pub-type="epub">2624-9375</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/frwa.2024.1360941</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Water</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>A critical review of biomonitoring in East African rivers: fostering community-based collaboration for environmental change observation</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Kitaka</surname> <given-names>Nzula</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/881711/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Omondi</surname> <given-names>Lorine A.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2636180/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Mureithi</surname> <given-names>Priscilla W.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2530291/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Bauer</surname> <given-names>Andreas</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Melcher</surname> <given-names>Andreas</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1446709/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Ssanyu</surname> <given-names>Grace A.</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2685668/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Biological Sciences, Egerton University</institution>, <addr-line>Njoro</addr-line>, <country>Kenya</country></aff>
<aff id="aff2"><sup>2</sup><institution>Institute of Development Research, University of Natural Resources and Life Sciences</institution>, <addr-line>Vienna</addr-line>, <country>Austria</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Biological Science, Kyambogo University</institution>, <addr-line>Kampala</addr-line>, <country>Uganda</country></aff>
<author-notes>
<fn fn-type="edited-by" id="fn0003">
<p>Edited by: Francis O. Arimoro, Federal University of Technology Minna, Nigeria</p>
</fn>
<fn fn-type="edited-by" id="fn0004">
<p>Reviewed by: Ovie Edegbene, Federal University of Health Sciences Otukpo, Nigeria</p>
<p>Frank C. Akamagwuna, University of Alabama, United States</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Nzula Kitaka, <email>nkitaka@egerton.ac.ke</email></corresp>
</author-notes>
<pub-date pub-type="epub">
<day>17</day>
<month>07</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>6</volume>
<elocation-id>1360941</elocation-id>
<history>
<date date-type="received">
<day>24</day>
<month>12</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>07</day>
<month>05</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2024 Kitaka, Omondi, Mureithi, Bauer, Melcher and Ssanyu.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Kitaka, Omondi, Mureithi, Bauer, Melcher and Ssanyu</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The contribution of citizen scientists to environmental monitoring is notably increasing significantly. Governments worldwide establish Water Users Associations (WUAs) as a good practice model to implement Integrated Water Resource Management (IWRM) at local levels. These associations target different stakeholders depending on the expected outcome. However, their effectiveness, especially in East Africa, can only be determined case by case. In Kenya, Water Resources Users Associations are registered, voluntary community groups whose members are water users and land owners. Similarly, in Uganda, community-based initiatives exist, especially along degraded rivers, involving cooperation between local communities and regional water authorities. On the contrary, it has been reported that in Tanzania, many community initiatives created become non-functional within 2&#x2013;3&#x2009;years of induction. In general, the main responsibility of Water Users Associations or its equivalent is to manage and conserve water resources for sustainable uses. In most cases, water quality monitoring by communities through citizen science is limited to the visual appearance of water in the river channel. While this can indicate the water&#x2019;s esthetic value, it is insufficient for assessing the ecological status of rivers, which is influenced by a variety of physical, chemical, biological, and socioeconomic factors. The use of bioindicators has been advocated as a feasible method for community-based water quality river monitoring. Therefore, this review explores the commonly used bio-indicators and bio-assessment tools for river health assessment and their complexities when using a biomonitoring community-based approach through citizen science. Tolerance and intolerance macroinvertebrate and fish metric protocols that utilize identification keys have been recommended. These protocols are designed to be user-friendly and require minimal taxonomic expertise, making them easy for community volunteers to use with minimal basic training. The sustainability of these citizen science initiatives relies on the motivation of volunteers, the frequency of monitoring activities, and collaboration with researchers and government agencies. These initiatives not only facilitate environmental monitoring but also foster community engagement and awareness regarding the ecological status of rivers, thereby addressing knowledge and data gaps necessary for effective policy-making. This approach provides a practical model for environmental stewardship and participatory resource management in East Africa.</p>
</abstract>
<kwd-group>
<kwd>biomonitoring</kwd>
<kwd>community-based collaboration</kwd>
<kwd>environmental changes</kwd>
<kwd>citizen science</kwd>
<kwd>rivers</kwd>
<kwd>integrated water resource management</kwd>
<kwd>water quality</kwd>
</kwd-group>
<counts>
<fig-count count="1"/>
<table-count count="4"/>
<equation-count count="0"/>
<ref-count count="218"/>
<page-count count="19"/>
<word-count count="18242"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Water and Human Systems</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="sec1">
<title>Introduction</title>
<p>Globally, rivers are the most vulnerable aquatic systems due to increased exposure to intertwined stressors (<xref ref-type="bibr" rid="ref109">Mamun and An, 2020</xref>). These stressors, particularly human settlements and other anthropogenic activities, have an immense impact on river systems&#x2019; health. Social stimulation models have been used to assess the health status of several river systems, including identifying the Drivers, Pressure, State, Impact, and Response (DPSIR). However, the DPSIR framework, which elaborates the cause&#x2013;effect relationships between interacting components of social, economic, and environmental systems, had barely been used in East Africa before. However, several drivers affecting rivers in Uganda and Kenya have been reported by Andreas Melcher (Personal communication, 22nd February 2023, during an online training on Community-Based Water Quality Monitoring in River Health). Agriculture, industry, and urban development have been identified as the key drivers, with pollution and physical alteration of channel characteristics being the main pressures. However, DIPSIR requires the availability of water quality data and information, indicating the necessity of a structured health monitoring system for the river basins. This has been a big challenge for many rivers, especially in East Africa, posing a gap toward the development of science-based management regulations and policies (<xref ref-type="bibr" rid="ref93">Kagalou et al., 2012</xref>; <xref ref-type="bibr" rid="ref171">Sendzimir and Schmutz, 2018</xref>; <xref ref-type="bibr" rid="ref70">Georgiou et al., 2024</xref>). In addition, factors such as the timing and duration of the sampling period may cause differences in the estimates of targeted organisms and benthic biodiversity reported for some West African streams (<xref ref-type="bibr" rid="ref92">Kabor&#x00E9; et al., 2016</xref>).</p>
<p>Furthermore, the development of environmental monitoring tools strongly relies on several principles: technical co-evolution of data processing techniques, the use of scientific principles in the design of monitoring systems at the local, regional, and global scales, and the use of data from humankind risk assessment and the environment (<xref ref-type="bibr" rid="ref66">Feld et al., 2011</xref>; <xref ref-type="bibr" rid="ref45">Dahm et al., 2013</xref>). To put in place a monitoring system, information systems are key for effective long-term management strategies of water systems, of which many are facing complex socioecological challenges (<xref ref-type="bibr" rid="ref136">Naigaga et al., 2011</xref>). Therefore, information leading to an understanding of the effects of some of the key environmental stressors (land use change, urbanization, and industrialization) on the status of river resources is essential for formulating effective basin management plans (<xref ref-type="bibr" rid="ref189">Urbani&#x010D; et al., 2020</xref>) for wise use. This infers that there is a need for a concerted effort to enhance river systems&#x2019; health monitoring due to their close proximity to the people and their livelihoods, hence more exposed to human-impacted stressors. Exploring other options for data acquisition to gather more information on the ecological integrity of rivers is crucial. The option of citizen science through community-based action for empowering citizens to monitor the status of their immediate rivers, identify issues and causes, and lobby for action from relevant water authorities cannot be ignored in the 21st century, where the world is facing major environmental challenges such as climate change and its extreme hydrological impacts, particularly to rivers.</p>
<p>Citizen science, also sometimes referred to as community science, has drawn a lot of attention since the mid-1990s. There are several definitions of citizen science in literature (<xref ref-type="bibr" rid="ref85">Hecker et al., 2019</xref>) derived from either policy or practice impacts. <xref ref-type="bibr" rid="ref83">Haklay et al. (2021)</xref> demonstrated the complexities and challenges of defining citizen science based on different contexts and objectives of those defining it: policymakers, funding agencies, scientific communities, and practitioners. However, when adopting citizen science initiatives, a common understanding among the relevant stakeholders would be enough to identify the influencing factors and preconditions to develop citizen science practices in the required context. This study adopts a broad definition of citizen science to refer to the active engagement of the general public (of varying education levels) to produce new knowledge for science and society in collaboration with scientists. The general public is then viewed as citizen scientists whose motivation is the desire for awareness to increase their scientific literacy, initiate policy and decisions, or fill gaps in societal academia-led monitoring of ecosystem health (<xref ref-type="bibr" rid="ref201">Whitelaw et al., 2003</xref>; <xref ref-type="bibr" rid="ref43">Conrad and Hilchey, 2011</xref>). Their motivation may be influenced by age, level of education, gender, and socioeconomic status. Community-based monitoring is a concept of citizen science defined as &#x201C;a process where concerned citizens, government agencies, industry, academia, community groups, and local institutions collaborate to monitor, track and respond to issues of common community (environmental) concern&#x201D; (<xref ref-type="bibr" rid="ref201">Whitelaw et al., 2003</xref>; <xref ref-type="bibr" rid="ref43">Conrad and Hilchey, 2011</xref>) and/or co-management of natural resources and catchments, where stakeholders are all involved (<xref ref-type="bibr" rid="ref97">Keough and Blahna, 2006</xref>).</p>
<p>Citizen scientists play a fundamental role in the conservation of river ecosystems. The Kenyan Water Act, 2002, section 15 (3e), led to the formation of Water Resource Users Associations (WRUAs) in Kenya, similar to Water Users Associations (WUAs) in Tanzania (<xref ref-type="bibr" rid="ref6">Allouche, 2016</xref>; <xref ref-type="bibr" rid="ref162">Richards, 2019</xref>). Water associations are registered and voluntary community groups comprising men and women of varying ages and education levels living within river catchments. It recognizes the role of communities in the stewardship and management of water resources, which was included in the Citizen Index of Ecological Integrity (CIEI) (<xref ref-type="bibr" rid="ref10">Aura et al., 2021</xref>). Their role is to monitor water quality, resolve water conflicts arising from water use, share information and ideas about rivers, and protect and conserve them. In most cases, community-based water quality monitoring is mainly through visual observations of water, which does not reveal the ecological status. Despite East African countries transitioning initiatives to use biomonitoring for water quality, the development of citizen science is still at a rudimentary budding state (<xref ref-type="bibr" rid="ref160">Requier et al., 2020</xref>). Therefore, this study gives novel insights into possible biomonitoring tools, such as indices and models, and identifies suitable indicators that are easy to adopt, affordable, and reliable for assessing river health. However, for successful citizen science monitoring, the volunteers need awareness of the tools available and those that they can easily use through training and retooling.</p>
<p>Citizen science creates awareness of the necessity of continuous monitoring of rivers and the need for data quality assurance in the communities. Bioassessment has been identified as one of the best strategies to monitor aquatic systems&#x2019; health and response to disturbance and environmental characteristics shifts. Therefore, the need for bioassessment studies of these systems has led to the development and adoption of various biomonitoring tools (<xref ref-type="table" rid="tab1">Table 1</xref>). In recent times, initiatives for the development of different bioassessment tools for African river systems based on different responses of organisms to environmental variations are on the increase. Bioassessment tools are mostly preferred because they are sensitive, highly robust, cost-effective, and easy to interpret (<xref ref-type="bibr" rid="ref49">Dalu et al., 2016</xref>). However, no single tool can be used across all the river systems because of their diverse and sometimes dynamic characteristics, especially in tropical systems.</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Characteristics of different biomonitoring tools adopted or developed for assessment of water quality and system health in African rivers.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top"><bold>Biomonitoring tool</bold></th>
<th align="left" valign="top"><bold>Countries that have used the tool</bold></th>
<th align="left" valign="top"><bold>Sampling device</bold></th>
<th align="left" valign="top"><bold>Mesh size (&#x03BC;m)</bold></th>
<th align="left" valign="top"><bold>Sampling habitats</bold></th>
<th align="left" valign="top"><bold>Sampling time</bold></th>
<th align="left" valign="top"><bold>Sorting aid</bold></th>
<th align="left" valign="top"><bold>Taxonomic level</bold></th>
<th align="left" valign="top"><bold>Source</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">South African scoring system (SASS)</td>
<td align="left" valign="top">South Africa, Zimbabwe, Burkina Faso, Uganda, Kenya, Swaziland</td>
<td align="left" valign="top">Kick-net</td>
<td align="left" valign="top">1,000 or 500</td>
<td align="left" valign="top">Stones, vegetation, gravel, sand and mud</td>
<td align="left" valign="top">2&#x2013;5&#x2009;min per biotope</td>
<td align="left" valign="top">Naked eye, hand lens</td>
<td align="left" valign="top">Mostly Family, some in Order or Class level</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref55">Dickens and Graham (2002)</xref>, <xref ref-type="bibr" rid="ref142">Obubu et al., 2021</xref>, <xref ref-type="bibr" rid="ref1515">Ndebele-Murisa (2012)</xref>, <xref ref-type="bibr" rid="ref100">Koblinger and Trauner (2013)</xref>, <xref ref-type="bibr" rid="ref23">Bere and Nyamupingidza (2014)</xref>, <xref ref-type="bibr" rid="ref129">Mthimkhulu et al. (2004)</xref>, <xref ref-type="bibr" rid="ref133">Mwedzi et al. (2016)</xref>, and <xref ref-type="bibr" rid="ref146">Oigara and Masese (2017)</xref></td>
</tr>
<tr>
<td align="left" valign="top">Tanzania river scoring system (TARISS)</td>
<td align="left" valign="top">Tanzania, Rwanda, Uganda</td>
<td align="left" valign="top">Kick-net</td>
<td align="left" valign="top">500</td>
<td align="left" valign="top">Stones, vegetation, gravel, sand and mud</td>
<td align="left" valign="top">2&#x2013;5&#x2009;min per biotope</td>
<td align="left" valign="top">Naked eye, hand lens</td>
<td align="left" valign="top">Mostly Family, some in Order or Class level</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref91">Kaaya et al. (2015)</xref>, <xref ref-type="bibr" rid="ref58">Dusabe et al. (2019)</xref>, and <xref ref-type="bibr" rid="ref185">Tumusiime et al. (2019)</xref></td>
</tr>
<tr>
<td align="left" valign="top">Macroinvertebrate based biotic score system (ETHbios)</td>
<td align="left" valign="top">Ethiopia</td>
<td align="left" valign="top">Square frame (side 25&#x2009;cm) hand net</td>
<td align="left" valign="top">500</td>
<td align="left" valign="top">Stones, vegetation, gravel, sand and mud</td>
<td align="left" valign="top">Not specified</td>
<td align="left" valign="top">Naked eye</td>
<td align="left" valign="top">Lowest possible taxonomic level but mostly Family level</td>
<td align="left" valign="top">
<xref ref-type="bibr" rid="ref9">Aschalew and Moog (2015)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top">Namibian scoring system (NASS)</td>
<td align="left" valign="top">Namibia</td>
<td align="left" valign="top">Kick-net</td>
<td align="left" valign="top">500</td>
<td align="left" valign="top">Stones, vegetation, gravel, sand and mud</td>
<td align="left" valign="top">2&#x2013;5&#x2009;min per biotope</td>
<td align="left" valign="top">Naked eye, hand lens</td>
<td align="left" valign="top">Mostly Family, some in Order or Class level</td>
<td align="left" valign="top">
<xref ref-type="bibr" rid="ref150">Palmer and Taylor (2004)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top">Niger delta urban multimetric index (MINDU)</td>
<td align="left" valign="top">Nigeria</td>
<td align="left" valign="top">D-Frame Kick-net</td>
<td align="left" valign="top">500</td>
<td align="left" valign="top">Vegetation, sand, silt, mud, stones then grouped as composite samples</td>
<td align="left" valign="top">3&#x2009;min per biotope</td>
<td align="left" valign="top">Stereoscopic microscope</td>
<td align="left" valign="top">Family level</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref61">Edegbene et al. (2019)</xref> and <xref ref-type="bibr" rid="ref60">Edegbene et al. (2022)</xref></td>
</tr>
<tr>
<td align="left" valign="top">Rwenzori score (RS)</td>
<td align="left" valign="top">Uganda</td>
<td align="left" valign="top">Standard dip net</td>
<td align="left" valign="top">500</td>
<td align="left" valign="top">Macrophytes, sand, mud, and stones then pooled to one composite sample</td>
<td align="left" valign="top">5&#x2009;min</td>
<td align="left" valign="top">Stereo Olympus microscope</td>
<td align="left" valign="top">Family level</td>
<td align="left" valign="top">
<xref ref-type="bibr" rid="ref130">Musonge et al. (2020)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top">Zambian invertebrate scoring system (ZISS)</td>
<td align="left" valign="top">Zambia</td>
<td align="left" valign="top">Kick-net</td>
<td align="left" valign="top">1,000</td>
<td align="left" valign="top">Stones, vegetation, gravel, sand and mud</td>
<td align="left" valign="top">2&#x2013;5&#x2009;min per biotope</td>
<td align="left" valign="top">Naked eye, hand lens</td>
<td align="left" valign="top">Mostly Family, some in Order or Class level</td>
<td align="left" valign="top">
<xref ref-type="bibr" rid="ref47">Dallas et al. (2018)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top">Okavango assessment system (OKASS)</td>
<td align="left" valign="top">Botswana</td>
<td align="left" valign="top">Sweep net (30 by 30&#x2009;cm square frame)</td>
<td align="left" valign="top">950</td>
<td align="left" valign="top">Vegetation, sediment, water</td>
<td align="left" valign="top">2&#x2009;min per habitat</td>
<td align="left" valign="top">Naked eye, microscope</td>
<td align="left" valign="top">Mostly Family, some in Order or Class level</td>
<td align="left" valign="top">
<xref ref-type="bibr" rid="ref48">Dallas and Mosepele (2020)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top">Macroinvertebrate-based multimetric index for zion river basin (MMIZB)</td>
<td align="left" valign="top">Togo</td>
<td align="left" valign="top">Dip net (circular opening with 33&#x2009;cm diameter)</td>
<td align="left" valign="top">320</td>
<td align="left" valign="top">Substrate samples are then combined into one composite sample</td>
<td align="left" valign="top">Not specified</td>
<td align="left" valign="top">Not specified</td>
<td align="left" valign="top">Family level</td>
<td align="left" valign="top">
<xref ref-type="bibr" rid="ref178">Tampo et al. (2020)</xref>
</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Rapid Bioassessment Protocols (RBPs) are some of the tools that have been proven to be reliable and quick in evaluating the water quality of riverine ecosystems (<xref ref-type="bibr" rid="ref106">Lowe et al., 2013</xref>). South African Scoring System (SASS) was first developed in Africa using riverine macroinvertebrates to evaluate the state of South African rivers (<xref ref-type="bibr" rid="ref55">Dickens and Graham, 2002</xref>) and in Zimbabwe (<xref ref-type="bibr" rid="ref133">Mwedzi et al., 2016</xref>). SASS has been further modified, standardized, and adopted by other countries, such as the Zambia Invertebrates Scoring System (ZMSS), Okavango Assessment System (OKAS) in Botswana, and Namibia Scoring System (NASS) (<xref ref-type="bibr" rid="ref106">Lowe et al., 2013</xref>). SASS has also been successfully adopted in other sub-Saharan countries, including Ethiopia, where a laboratory-based macroinvertebrate biotic system (ETHbios) was developed (<xref ref-type="bibr" rid="ref9">Aschalew and Moog, 2015</xref>). In Nigeria, for instance, the Niger Delta Urban Multimetric Index (MINDU) has been developed and applied for evaluating the water quality of urban rivers (<xref ref-type="bibr" rid="ref60">Edegbene et al., 2022</xref>) in addition to various biometric indices, including Hilsenhoff&#x2019;s Biotic Index previously adopted for water quality monitoring in the country (<xref ref-type="bibr" rid="ref145">Ogbeibu et al., 2013</xref>).</p>
<p>In East Africa, SASS has been applied with modifications successfully in Uganda and Tanzania, for example, Rwenzori Score (RS) and Tanzania River Scoring System (TARISS), respectively. Furthermore, TARISS has been applied successfully in the Rwanda and Uganda river systems (<xref ref-type="bibr" rid="ref58">Dusabe et al., 2019</xref>; <xref ref-type="bibr" rid="ref185">Tumusiime et al., 2019</xref>). In Kenya, SASS version 5 has been used in many rivers, including the Mara River (<xref ref-type="bibr" rid="ref146">Oigara and Masese, 2017</xref>) and the Mount Kenya Rivers (<xref ref-type="bibr" rid="ref108">M&#x2019;Erimba et al., 2014</xref>). However, one of the limitations of RBPs is the adoption in non-wadeable rivers more than 20&#x2009;m wide, which tend to adjust their sensitivity to different pollution types, hence affecting the interpretation of outputs due to high community structure variation coupled with patchy distribution (<xref ref-type="bibr" rid="ref47">Dallas et al., 2018</xref>).</p>
<p>Other indices used in bioassessment tools in East Africa include multimetric indices such as the Benthic Index of Biological Integrity (B-IBI), which has been used for assessing macroinvertebrates in Tanzania (<xref ref-type="bibr" rid="ref62">Elias et al., 2014</xref>) and Kenyan rivers (<xref ref-type="bibr" rid="ref118">Masese et al., 2009</xref>). Elsewhere, bioindicators have been integrated into monitoring aquatic ecosystems. Although a wide spectrum of aquatic organisms can be used as bioindicators, regional indices extensively focus on macroinvertebrates, diatoms, ciliates, and fungi. However, they are hardly identified to the lowest taxonomic level, resulting in some uncertainty and sometimes inaccuracy of the system health categorization. Therefore, this study provides the framework for future studies on the use of biomonitoring tools to support decision-making for better management and conservation of rivers, particularly in East Africa, and integrating the approach of including citizen science in ecosystem health monitoring (<xref ref-type="bibr" rid="ref37">Chandler et al., 2017</xref>; <xref ref-type="bibr" rid="ref10">Aura et al., 2021</xref>).</p>
</sec>
<sec sec-type="materials|methods" id="sec2">
<title>Materials and methods</title>
<p>A thorough literature review was conducted to identify the advancements of biomonitoring and to establish a community-based bioassessment protocol using selected bioindicators for East African rivers. This study adopted a comprehensive literature search using various search engines, including Google Scholar, Science Direct, and Web of Science. The search was narrowed down to the use of biomonitoring, bioindicators, community-based collaboration, environmental changes, citizen science, river ecosystems management, and water quality as keywords. The inclusion criteria for peer-reviewed publications were based on relevance to the topic and publications between 2000 and 2023, although some aspects required older publications (history and evolution of biomonitoring). Publications that were not available in English were excluded. The study further employed in-depth review and analysis of information from different peer-research reports and reviewed publications. Published research articles, reports, theses, and conference proceedings were reviewed.</p>
</sec>
<sec id="sec3">
<title>History and evolution of biomonitoring</title>
<p>Biomonitoring began 350&#x2009;years Before Christ (BC) when Aristotle (A Greek philosopher) found &#x201C;black mud&#x201D; and &#x201C;red tubes&#x201D; growing out of &#x201C;white slime&#x201D; in brooks contaminated with sewage (<xref ref-type="bibr" rid="ref128">Moog et al., 2018</xref>). Aristotle concluded the brooks had low oxygen, evidenced by black decaying mud (caused by the sewage), a community of <italic>Beggiatoa</italic> sulfur bacteria (white slime), oligochaete sludge worms, and chironomids (red tubes). After 1800&#x2009;years, Friedrich Kolenati discovered that caddis larvae were absent in a stream that had factories on the upper section. The concept of biological indicators of pollution, generally called the saprobic system, was developed around 1900 by two German scientists, namely R. Kolkwitz and M. Marsson (<xref ref-type="bibr" rid="ref2001">Persoone and De Pauw, 1979</xref>). They used benthic algae and invertebrates as bioindicators. They called organisms in clean water `Kathrobien` and those in polluted water as `Saprobien.`</p>
<p>After World War 11, Liebmann introduced visualization of the river&#x2019;s ecological status in the saprobic system using color bands. Politicians, decision-makers, and water managers became interested in the new saprobic system. Later, in <xref ref-type="bibr" rid="ref152">Pantle and Buck (1955)</xref> developed the saprobic system to quantify pollution (<xref ref-type="bibr" rid="ref128">Moog et al., 2018</xref>). This index was easy for the users to interpret. It ranged from 1 (very good quality) to 4 (extremely poor quality). Around the same time, a biotic index was developed in the United States (<xref ref-type="bibr" rid="ref18">Beck, 1954</xref>). The index was developed to quantify the extent of stream pollution and its effects on stream biota. In 1961, the concept of saprobic valences was introduced in saprobic system by <xref ref-type="bibr" rid="ref207">Zelinka (1961)</xref>. This concept reflected a 100% occurrence of taxon among four water quality classes. In 1973, Sl&#x00E1;decek wrote a book titled &#x201C;System of Water Quality from the Biological Point of View.&#x201D; This book was used in Central and Eastern Europe until the saprobic system was modified again by the European Water Framework Directive 2000/60/EC (WFD) to include more water quality elements, type-specific reference conditions, and protocol to classify ecological status (<xref ref-type="bibr" rid="ref128">Moog et al., 2018</xref>).</p>
<p>Several methods have been developed since the concept of biomonitoring began. From the mid to late 1980s, Rapid Bioassessment Protocols (RBPs) for macroinvertebrates, fish, and periphyton were developed. The macroinvertebrate protocol was the most commonly adopted and used due to its sedentary nature and sensitivity to a wide range of anthropogenic pressures and stressors (<xref ref-type="bibr" rid="ref200">Wen et al., 2017</xref>; <xref ref-type="bibr" rid="ref128">Moog et al., 2018</xref>; <xref ref-type="bibr" rid="ref164">Ruaro et al., 2020</xref>). In South Africa, the first biotic index was developed in 1972, but it required intense labor (<xref ref-type="bibr" rid="ref42">Chutter, 1998</xref>). The index was based on subjective scoring considering the presumed sensitivity or resistance of each taxon to impairment. South Africa Scoring System (SASS) was developed later (<xref ref-type="bibr" rid="ref55">Dickens and Graham, 2002</xref>). Since then, other countries in Africa have developed their own biotic indices mainly by modifying SASS (<xref ref-type="bibr" rid="ref46">Dallas, 2021</xref>). To date, there are several initiatives by countries in Africa targeting the development or modifying existing indices suitable for their river monitoring programs.</p>
</sec>
<sec id="sec4">
<title>Biomonitoring as a tool for integrated water resource management</title>
<p>Most rivers are subjected to multiple stressors, and therefore, determination of the present ecological status by the use of bioindicators is of vital importance in guiding management and conservation decisions (<xref ref-type="bibr" rid="ref119">Masese et al., 2023</xref>). Consequently, the development and application of bioassessment and biomonitoring techniques is an essential component of Integrated Water Resource Management (<xref ref-type="bibr" rid="ref115">Masese et al., 2021</xref>). Integrated Water Resources Management (IWRM), as defined by the Global Water Partnership (GWP), is the process that promotes the coordinated development and management of water, land, and related resources to maximize economic and social welfare in an equitable manner without compromising the sustainability of vital ecosystems (<xref ref-type="bibr" rid="ref5">Agarwal et al., 2000</xref>). Biomonitoring serves as a vital component of IWRM due to its provision of real-time data on aquatic ecosystem health, early detection of pollution, cost-effectiveness, and understanding of complex interactions between environmental factors and biological communities, and thus guides decision-making processes in water management (<xref ref-type="bibr" rid="ref151">Pandey et al., 2018</xref>; <xref ref-type="bibr" rid="ref176">Sumudumali and Jayawardana, 2021</xref>).</p>
<p>Maintaining or restoring aquatic ecosystem integrity guarantees that ecosystem services remain preserved, as well as maintaining the biological, physical, and chemical components of ecological integrity (<xref ref-type="bibr" rid="ref16">Barbour et al., 2000</xref>). Most water laws and regulations, such as the Clean Water Act (CWA) of the United States of America (USA) and the Water Framework Directive (WFD) of the European Union (EU), acknowledge the interdependence of these three components and emphasize the need to combine evaluations to assess ecosystem health (<xref ref-type="bibr" rid="ref15">Barbour and Paul, 2010</xref>). The EU&#x2019;s Water Framework Directive (WFD) prioritizes the use of biotic factors, including fish, macroinvertebrates, and aquatic plants, for assessing freshwater quality in streams (<xref ref-type="bibr" rid="ref77">Gritzalis, 2006</xref>). Many countries with aquatic ecosystem assessment programs recognize the value of biomonitoring as a tool for IWRM and have adopted a strategy that uses biological indicators as barometers for ecological conditions and trends (<xref ref-type="bibr" rid="ref89">Jungwirth et al., 2012</xref>), as well as a scientific foundation for decision-making on aquatic resource management (<xref ref-type="bibr" rid="ref128">Moog et al., 2018</xref>).</p>
<p>The CWA, USA, and WFD, EU, are the initial IWRM frameworks directly implementing extensive biomonitoring and bioassessment systems. Similar legislations do exist in other countries, for instance, South Korea (National Stream Health Monitoring Act), Australia (Sustainable Rivers Audit), New Zealand (Resource Management Act), South Africa (National Water Act), and Canada (Canada Water Act) (<xref ref-type="bibr" rid="ref116">Masese et al., 2013</xref>). Within East Africa, Kenya&#x2019;s current legislative framework for IWRM includes the Environmental Management and Coordination (Water Quality) Regulations of 2006 (<xref ref-type="bibr" rid="ref74">Government of Kenya, 2006</xref>), which aims at the protection of water sources such as lakes, rivers, streams, springs, and wells. <xref ref-type="bibr" rid="ref180">The Water Act of 2002</xref> (<xref ref-type="bibr" rid="ref73">Government of Kenya, 2002</xref>), which focuses on the management of water resources, regulates water supply and sewerage services. The Environmental Management and Coordination Act (EMCA) of 1999 (<xref ref-type="bibr" rid="ref63">EMCA, 1999</xref>), which focuses on protecting rivers, lakes, and wetlands, mandates the National Environmental Management Authority (NEMA) regulatory role in the conservation of biological diversity. In Uganda, the Water Act of 1997, the National Water Policy of 1999, and the <xref ref-type="bibr" rid="ref187">Uganda Law Reform Commission (2000)</xref> have been designed to &#x201C;provide for use, protection and management of water resources and supply; to provide and facilitate water supply and sewerage undertakings, and manage water resources in a sustainable manner for the benefit of the people of Uganda&#x201D; (<xref ref-type="bibr" rid="ref210">Zizinga et al., 2015</xref>). Tanzania implemented a River Basin Management Approach for water resource management in the 1980s, where the nation was sub-divided into nine management regions after the amendment of the Principal Act No. 42 of 1974 (<xref ref-type="bibr" rid="ref174">Sokile et al., 2005</xref>). The country&#x2019;s first National Water Policy was adopted in 1991 as a supplement to reforms in the water sector. Currently, the Water Resources Management Act of 2022 (<xref ref-type="bibr" rid="ref75">Government of Tanzania, 2009</xref>) provides the institutional and legal framework for the development and sustainable management of water resources to generate principles for water resources management. Although the above EA legislative frameworks do not explicitly mention biomonitoring as one of the tools to be used, they do acknowledge the importance of habitat resource quality management, which includes the physical, chemical, and biological characteristics of the water systems. Although bioassessment and biomonitoring are still in their early stages in many countries, especially in Africa, they are expanding fast as a scientific foundation for decision-making on aquatic resource management. A good example is the adoption of TARISS in the national water monitoring program in Tanzania.</p>
</sec>
<sec id="sec5">
<title>Commonly used bio-indicators in aquatic ecosystems</title>
<p>Bioindicators are a group of organisms whose quantity, existence, and nature project the quality of ecological conditions (<xref ref-type="bibr" rid="ref153">Parmar et al., 2016</xref>; <xref ref-type="bibr" rid="ref128">Moog et al., 2018</xref>). They are fundamental mirrors of ecological impacts and are, hence, instrumental in the development of strategies for the conservation and management of ecosystems. They further noted that bioindicators have the ability to assimilate both long- and short-term fluxes in an array of ecological variables.</p>
<p>Many indicators, including physical, chemical, and biological indicators (bioindicators), have been used to evaluate living or non-living elements in the environment and to monitor environmental change (<xref ref-type="bibr" rid="ref25">Bowler and Bohning-Gaese, 2017</xref>; <xref ref-type="bibr" rid="ref82">Gustavsson et al., 2017</xref>; <xref ref-type="bibr" rid="ref8">Areco et al., 2021</xref>; <xref ref-type="bibr" rid="ref54">Dias et al., 2021</xref>). However, water quality approaches are useful in identifying different sources of contaminants and checking compliance with set limits. However, these methods are less effective in comparing sites impacted by different water quality (<xref ref-type="bibr" rid="ref51">Debels et al., 2005</xref>). Furthermore, <xref ref-type="bibr" rid="ref1">Abdelkarim (2020)</xref> reported that bioindicator species can respond to environmental changes and biological effects in a comprehensive and dynamic way, providing a basis for accurate assessment of ecological changes. Therefore, biological monitoring using the response of bioindicators provides a much easier way to measure ecological integrity due to environmental change (<xref ref-type="bibr" rid="ref56">Dol&#x00E9;dec and Statzner, 2010</xref>).</p>
<p>In the last few decades, several biological metrics and indices have been developed to assess the ecological status of riverine ecosystems using bioindicators (<xref ref-type="table" rid="tab1">Table 1</xref>). Most metrics and indices have been developed based on five biological quality elements: macroinvertebrates, fishes, phytoplanktons, benthic diatoms, and macrophytes (<xref ref-type="bibr" rid="ref24">Birk et al., 2012</xref>). These key elements are efficient in monitoring anthropogenic impairment on the lotic ecosystem because they respond to different stressors affecting water quality (<xref ref-type="bibr" rid="ref69">Gabriel et al., 2017</xref>). Furthermore, there has been increasing use of other bioindicators in river monitoring, including fungi (<xref ref-type="bibr" rid="ref166">Samson et al., 2020</xref>), ciliates (<xref ref-type="bibr" rid="ref101">Kulas et al., 2021</xref>), and bacteria (<xref ref-type="bibr" rid="ref40">Chen et al., 2022</xref>). However, the type and characteristics of the river system being investigated and the pollution source determine the choice of the key bioindicator element to be chosen for monitoring. Furthermore, other environmental factors such as temperature, light transmission, and suspended solids affect the distribution of bioindicators in ecosystems (<xref ref-type="bibr" rid="ref98">Khatri and Tyagi, 2015</xref>) and must be taken into consideration when choosing bioindicators. Some bioindicators for assessing the ecological quality of African rivers are discussed below, and key factors are summarized in <xref ref-type="table" rid="tab2">Table 2</xref>.</p>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption>
<p>Commonly used bioindicators in aquatic ecosystems.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top"><bold>Bioindicator</bold></th>
<th align="left" valign="top"><bold>Technique</bold></th>
<th align="left" valign="top"><bold>Advantages</bold></th>
<th align="left" valign="top"><bold>Disadvantages</bold></th>
<th align="left" valign="top"><bold>Reference</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Macroinvertebrates</td>
<td align="left" valign="top">Ephemeroptera, Plecoptera, Trichoptera (EPT) index, functional measures, Functional and Feeding Guilds (FFG) and diversity, molecular, biotic index, Multimetric Indices molecular approaches, stable isotopes, biomarkers</td>
<td align="left" valign="top">Sensitive to stressors, widely distributed, sedentary</td>
<td align="left" valign="top">Species variation in different geographical regions, resource limitations including taxonomic expertise, funding, and inadequate data</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref137">Nalugwa et al. (2010)</xref>, <xref ref-type="bibr" rid="ref35">Chadwick et al. (2012)</xref>, <xref ref-type="bibr" rid="ref197">Watson and Dallas (2013)</xref>, <xref ref-type="bibr" rid="ref62">Elias et al. (2014)</xref>, <xref ref-type="bibr" rid="ref90">Kaaya (2014)</xref>, <xref ref-type="bibr" rid="ref9001">Gichana et al. (2015)</xref>, <xref ref-type="bibr" rid="ref91">Kaaya et al. (2015)</xref>, <xref ref-type="bibr" rid="ref92">Kabor&#x00E9; et al. (2016)</xref>, <xref ref-type="bibr" rid="ref133">Mwedzi et al. (2016)</xref>, <xref ref-type="bibr" rid="ref32">Carter et al. (2017)</xref>, <xref ref-type="bibr" rid="ref41">Chikodzi et al. (2017)</xref>, <xref ref-type="bibr" rid="ref200">Wen et al. (2017)</xref>, <xref ref-type="bibr" rid="ref20">Beentjes et al. (2019)</xref>, <xref ref-type="bibr" rid="ref58">Dusabe et al. (2019)</xref>, <xref ref-type="bibr" rid="ref76">Gouissi et al. (2019)</xref>, <xref ref-type="bibr" rid="ref185">Tumusiime et al. (2019)</xref>, <xref ref-type="bibr" rid="ref67">Ferreira et al. (2020)</xref>, <xref ref-type="bibr" rid="ref130">Musonge et al. (2020)</xref>, <xref ref-type="bibr" rid="ref186">Turibamwe and Wangalwa (2020)</xref>, <xref ref-type="bibr" rid="ref3001">Ochieng et al. (2021)</xref>, <xref ref-type="bibr" rid="ref205">Yegon et al. (2021)</xref>, <xref ref-type="bibr" rid="ref36">Chamia and Kutuny (2022)</xref>, <xref ref-type="bibr" rid="ref134">Mzungu et al. (2022)</xref>, <xref ref-type="bibr" rid="ref192">Wanderi et al. (2022)</xref>, <xref ref-type="bibr" rid="ref22">Benjamin et al., (2023)</xref>, <xref ref-type="bibr" rid="ref119">Masese et al. (2023)</xref>, and <xref ref-type="bibr" rid="ref144">Odhiambo et al. (2024)</xref></td>
</tr>
<tr>
<td align="left" valign="top">Fish</td>
<td align="left" valign="top">Individual parameters (morphological alterations; condition factor, fecundity), population levels metrics (sex-ratio, size frequency distribution as mortality and reproductive indicators), species (richness), their identity (similarity), relative abundance of species, diversity indices, Multimetric Indices</td>
<td align="left" valign="top">Sensitive to stressors</td>
<td align="left" valign="top">Low diversity in high-elevation rivers, low abundance</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref28">Budambula and Mwachiro (2006)</xref>, <xref ref-type="bibr" rid="ref99">Kleynhans (2007)</xref>, <xref ref-type="bibr" rid="ref136">Naigaga et al. (2011)</xref>, <xref ref-type="bibr" rid="ref169">Segurado et al. (2011)</xref>, <xref ref-type="bibr" rid="ref107">Lunde and Resh (2012)</xref>, <xref ref-type="bibr" rid="ref156">Raburu and Masese (2012)</xref>, <xref ref-type="bibr" rid="ref198">Waya et al. (2014)</xref>, <xref ref-type="bibr" rid="ref105">L&#x00F3;pez-L&#x00F3;pez and Sede&#x00F1;o-D&#x00ED;az (2015)</xref>, <xref ref-type="bibr" rid="ref120">Mataba et al. (2016)</xref>, <xref ref-type="bibr" rid="ref4001">Achieng et al. (2017)</xref>, <xref ref-type="bibr" rid="ref208">Zeni et al. (2017)</xref>, <xref ref-type="bibr" rid="ref26">Brejao et al. (2018)</xref>, <xref ref-type="bibr" rid="ref193">Wang et al. (2018)</xref>, <xref ref-type="bibr" rid="ref113">Mapenzi et al. (2020)</xref>, <xref ref-type="bibr" rid="ref114">Masese et al. (2020)</xref>, <xref ref-type="bibr" rid="ref125">Melcher et al. (2020)</xref>, <xref ref-type="bibr" rid="ref4">Achieng et al. (2021)</xref>, <xref ref-type="bibr" rid="ref17">Basooma et al. (2021)</xref>, <xref ref-type="bibr" rid="ref149">Osure et al. (2022)</xref>, <xref ref-type="bibr" rid="ref157">Raburu et al. (2022)</xref>, and <xref ref-type="bibr" rid="ref111">Mangi et al. (2023)</xref></td>
</tr>
<tr>
<td align="left" valign="top">Diatoms</td>
<td align="left" valign="top">Community structure and biomass, DNA meta-barcoding, Trophic Diatom Index (TDI), Trophic Index of Turkey (TIT), Eutrophication/pollution Index (EPI-D), Diatom Ecological Quality Index (DEQI), Trophic Water Quality Index (TWQI), South Africa Diatom Index</td>
<td align="left" valign="top">Short life cycles, diverse life strategies, sensitivity to stressors</td>
<td align="left" valign="top">Biases when explaining the differences between morphological and molecular-based diatom indices, limited diatom taxonomy knowledge, identification experts and appropriate, high precision laboratory equipment, easy-to-use diatom-based indices</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref65">European Union WFD (2000)</xref>, <xref ref-type="bibr" rid="ref155">Potapova and Charles (2003)</xref>, <xref ref-type="bibr" rid="ref96">Kelly et al. (2008)</xref>, <xref ref-type="bibr" rid="ref175">Stevenson et al. (2010)</xref>, <xref ref-type="bibr" rid="ref53">Dell'Uomo and Torrisi, 2011</xref>, <xref ref-type="bibr" rid="ref84">Harding and Taylor (2011)</xref>, <xref ref-type="bibr" rid="ref88">Juggins and Birks (2012)</xref>, <xref ref-type="bibr" rid="ref126">Mills and Ryves (2012)</xref>, <xref ref-type="bibr" rid="ref141">Oberg et al. (2012)</xref>, <xref ref-type="bibr" rid="ref184">Triest et al. (2012)</xref>, <xref ref-type="bibr" rid="ref52">Debenest et al. (2013)</xref>, <xref ref-type="bibr" rid="ref138">Namwaya et al. (2013)</xref>, <xref ref-type="bibr" rid="ref1010">Guiry and Guiry (2015)</xref>, <xref ref-type="bibr" rid="ref87">John (2015)</xref>, <xref ref-type="bibr" rid="ref104">Lobo et al. (2015)</xref>, <xref ref-type="bibr" rid="ref102">Lange-Bertalot et al. (2017)</xref>, <xref ref-type="bibr" rid="ref112">Mann (2017)</xref>, <xref ref-type="bibr" rid="ref183">Tomas et al. (2017)</xref>, <xref ref-type="bibr" rid="ref21">Benito et al. (2018)</xref>, <xref ref-type="bibr" rid="ref161">Riato et al. (2018)</xref>, <xref ref-type="bibr" rid="ref34">Celekli et al. (2019</xref>, <xref ref-type="bibr" rid="ref33">2021)</xref>, <xref ref-type="bibr" rid="ref11">Aura et al. (2020)</xref>, <xref ref-type="bibr" rid="ref14">Ballesteros et al. (2020)</xref>, <xref ref-type="bibr" rid="ref122">Mbao et al. (2020</xref>, <xref ref-type="bibr" rid="ref124">2022</xref>, <xref ref-type="bibr" rid="ref123">2023)</xref>, <xref ref-type="bibr" rid="ref165">Salinas-Camarillo et al. (2020)</xref>, <xref ref-type="bibr" rid="ref38">Charles et al. (2021)</xref>, <xref ref-type="bibr" rid="ref170">Sekadende et al. (2021)</xref>, and <xref ref-type="bibr" rid="ref143">Ochieng et al. (2022)</xref></td>
</tr>
<tr>
<td align="left" valign="top">Ciliates</td>
<td align="left" valign="top">Functional and taxonomic composition, molecular approaches</td>
<td align="left" valign="top">Widely distributed with a short lifespan, very sensitive to ecological pollution, possess a variety of trophic niches</td>
<td align="left" valign="top">Should be used along with macrozoobenthos, lack of expertise in their identification</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref191">Vermaat (2005)</xref>, <xref ref-type="bibr" rid="ref31">Carew et al. (2011)</xref>, <xref ref-type="bibr" rid="ref94">Kathol et al. (2011)</xref>, <xref ref-type="bibr" rid="ref188">Ukomadu (2012)</xref>, <xref ref-type="bibr" rid="ref182">Tirjakova and Vdacny (2013)</xref>, <xref ref-type="bibr" rid="ref158">Radhakrishnan and Jayaprakas (2015)</xref>, <xref ref-type="bibr" rid="ref50">Debastiani et al. (2016)</xref>, <xref ref-type="bibr" rid="ref177">Syberg-Olsen et al. (2016)</xref>, <xref ref-type="bibr" rid="ref204">Xu et al. (2016)</xref>, <xref ref-type="bibr" rid="ref2">Abraham et al. (2017)</xref>, <xref ref-type="bibr" rid="ref30">Cabral et al. (2017)</xref>, <xref ref-type="bibr" rid="ref19">Becker et al. (2018)</xref>, <xref ref-type="bibr" rid="ref59">Dwyer et al. (2018)</xref>, <xref ref-type="bibr" rid="ref154">Pawlowski et al. (2018)</xref>, <xref ref-type="bibr" rid="ref209">Zhao et al. (2018)</xref>, <xref ref-type="bibr" rid="ref127">Mohammed-Geba et al. (2019)</xref>, <xref ref-type="bibr" rid="ref44">Cordier et al. (2021)</xref>, <xref ref-type="bibr" rid="ref54">Dias et al. (2021)</xref>, <xref ref-type="bibr" rid="ref3">Acha et al. (2022)</xref>, <xref ref-type="bibr" rid="ref80">Gulin et al. (2022)</xref>, and <xref ref-type="bibr" rid="ref110">Mandal (2023)</xref></td>
</tr>
<tr>
<td align="left" valign="top">Fungi</td>
<td align="left" valign="top">Polymerase Chain Reaction (PCR), next-generation DNA sequencing transcriptome and metagenomics technologies</td>
<td align="left" valign="top">High diversity, universal distribution, high sensitivity to environmental modifications</td>
<td align="left" valign="top">Lack of sufficient reference systems and studies with regard to the use of fungi for routine biomonitoring for East African rivers</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref57">Duarte et al. (2013)</xref>, <xref ref-type="bibr" rid="ref173">Singara Charya (2015)</xref>, <xref ref-type="bibr" rid="ref203">Xie et al. (2016)</xref>, <xref ref-type="bibr" rid="ref103">Li et al. (2018)</xref>, <xref ref-type="bibr" rid="ref12">Aylagas et al. (2021)</xref>, <xref ref-type="bibr" rid="ref121">Maurya and Pachauri (2022)</xref>, and <xref ref-type="bibr" rid="ref194">Warnasuriya et al. (2023)</xref></td>
</tr>
<tr>
<td align="left" valign="top">Bacteria (Faecal Indicator Bacteria)</td>
<td align="left" valign="top">Number of Colony Forming Units per 100&#x2009;mL (Membrane Filtration), estimates of coliforms per 100&#x2009;mL by using McCrady&#x2019;s statistical tables (Most Probable Number)</td>
<td align="left" valign="top">Indicates possible presence of other enteric pathogens, health risks like antibiotic resistance associated with consumption of contaminated water</td>
<td align="left" valign="top">Time-consuming enumeration process coupled with expensive and not easily available materials (medium, sterile gridded membrane filters, filtration unit and pump, and colony counter)</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref29">Byamukama et al. (2000)</xref>, <xref ref-type="bibr" rid="ref7">APHA (2005)</xref>, <xref ref-type="bibr" rid="ref202">World Health Organisation (2006)</xref>, <xref ref-type="bibr" rid="ref206">Yillia et al. (2008)</xref>, <xref ref-type="bibr" rid="ref86">Hysko et al. (2010)</xref>, <xref ref-type="bibr" rid="ref131">Mutai (2013)</xref>, <xref ref-type="bibr" rid="ref132">Mwakalobo et al. (2013)</xref>, <xref ref-type="bibr" rid="ref72">Gichana et al. (2014)</xref>, <xref ref-type="bibr" rid="ref95">Katukiza et al. (2014)</xref>, <xref ref-type="bibr" rid="ref147">Olal et al. (2014)</xref>, <xref ref-type="bibr" rid="ref68">Fuhrimann et al. (2015)</xref>, <xref ref-type="bibr" rid="ref172">Sila (2019)</xref>, and <xref ref-type="bibr" rid="ref148">Omondi (2021)</xref></td>
</tr>
</tbody>
</table>
</table-wrap>
<sec id="sec6">
<title>Macroinvertebrates</title>
<p>Macroinvertebrates, especially benthos, are the most commonly used biomonitors in freshwater ecosystems (<xref ref-type="bibr" rid="ref35">Chadwick et al., 2012</xref>). They are significant components of aquatic food webs linking organic matter and nutrient sources (detritus, algae, and leaf litter) with higher trophic levels (<xref ref-type="bibr" rid="ref32">Carter et al., 2017</xref>). They are mostly preferred due to their wide range of sensitivity toward various stressors, wide distribution, long lifespan with subtle life stages, and sedentary behavior, thus providing good spatial resolution (<xref ref-type="bibr" rid="ref200">Wen et al., 2017</xref>). Previous studies have documented the use of macroinvertebrates in monitoring riverine ecosystems (<xref ref-type="table" rid="tab2">Table 2</xref>). Macroinvertebrates have been used successfully to assess land-induced changes to water quality in Zimbabwe (<xref ref-type="bibr" rid="ref133">Mwedzi et al., 2016</xref>; <xref ref-type="bibr" rid="ref41">Chikodzi et al., 2017</xref>) stream ecosystem response to land use (agricultural and urbanization) in Burkina Faso (<xref ref-type="bibr" rid="ref92">Kabor&#x00E9; et al., 2016</xref>) and Benin (<xref ref-type="bibr" rid="ref76">Gouissi et al., 2019</xref>), among many other case studies in the literature. Within East Africa, bioindicator species (Ephemeroptera, Plecoptera, and Trichoptera) EPT index, Functional and Feeding Guild (FFG), and biodiversity have been used to classify water quality in Mount Kenya streams (<xref ref-type="bibr" rid="ref36">Chamia and Kutuny, 2022</xref>; <xref ref-type="bibr" rid="ref22">Benjamin et al., 2023</xref>) and western Kenya (<xref ref-type="bibr" rid="ref134">Mzungu et al., 2022</xref>). Similar studies have been undertaken in Tanzania (<xref ref-type="bibr" rid="ref90">Kaaya, 2014</xref>), Uganda (<xref ref-type="bibr" rid="ref186">Turibamwe and Wangalwa, 2020</xref>), and Rwanda (<xref ref-type="bibr" rid="ref58">Dusabe et al., 2019</xref>). In the Afrotropical biogeographical realm, land use has been identified as one of the factors that can be used to predict longitudinal changes in water quality and characteristics of macroinvertebrate assemblages in rivers (<xref ref-type="bibr" rid="ref9001">Gichana et al., 2015</xref>), together with stream order and elevation gradients (<xref ref-type="bibr" rid="ref205">Yegon et al., 2021</xref>; <xref ref-type="bibr" rid="ref192">Wanderi et al., 2022</xref>). Attempts by some countries to have macroinvertebrates incorporated in technical and national standards of water quality monitoring have been initiated: TARISS in Tanzania (Kaaya Lulu, personal communication, May 2023 during online teaching).</p>
<p>In East Africa, biotic indices have advanced by incorporating macroinvertebrates in the bioassessment of various riverine ecosystems. For example, the Tanzania River Scoring System (TARISS) (<xref ref-type="bibr" rid="ref91">Kaaya et al., 2015</xref>) and Rwenzori Score (<xref ref-type="bibr" rid="ref130">Musonge et al., 2020</xref>) in Tanzania and Uganda, respectively. Other indices include the Macroinvertebrates Index of Biotic Integrity (M-IBI) and the Benthic Index of Biological Integrity used to assess rivers in Kenya (<xref ref-type="bibr" rid="ref119">Masese et al., 2023</xref>) and Tanzania (<xref ref-type="bibr" rid="ref62">Elias et al., 2014</xref>), respectively. Nonetheless, it is important to note that the aforementioned biotic indices have gained momentum without testing or validation of their effectiveness. For instance, TARISS has been applied in Uganda (<xref ref-type="bibr" rid="ref185">Tumusiime et al., 2019</xref>; <xref ref-type="bibr" rid="ref186">Turibamwe and Wangalwa, 2020</xref>; <xref ref-type="bibr" rid="ref3001">Ochieng et al., 2021</xref>), Kenya (<xref ref-type="bibr" rid="ref119">Masese et al., 2023</xref>), and Rwanda (<xref ref-type="bibr" rid="ref58">Dusabe et al., 2019</xref>) without validation or modifications. Similarly, ETHbios and SASS5 have been used in Kenya without standardization (<xref ref-type="bibr" rid="ref119">Masese et al., 2023</xref>). Failure to validate these tools and protocols before use would complicate universal use in novel areas where such methods do not exist or have not been tested before (<xref ref-type="bibr" rid="ref197">Watson and Dallas, 2013</xref>). Therefore, it is important that biotic indices be tested, validated, and, if possible, modified before rolling out for ecological assessment outside its geographical and ecological origin.</p>
<p>However, resource limitations, including taxonomic expertise, funding, and data availability, remain critical challenges to biomonitoring advancement in the whole of Africa. Nevertheless, considerable success has been made in advancing biomonitoring approaches in the region. A good example is the development of SAAS5 in South Africa, which other countries are now increasingly adopting or modifying to develop country-based indices. Therefore, there is a need for in-depth assessment and evaluation of the existing macroinvertebrates-based indices to trigger research for the modification and development of new ones where applicable to enhance wider adoption of these novel tools.</p>
</sec>
<sec id="sec7">
<title>Fish</title>
<p>Fish are sensitive to environmental stressors and are commonly used, especially in large rivers, to reflect human pressures and impacts (<xref ref-type="bibr" rid="ref125">Melcher et al., 2020</xref>). Past studies have focused on fish as bioindicators due to their special biological characteristics (<xref ref-type="bibr" rid="ref105">L&#x00F3;pez-L&#x00F3;pez and Sede&#x00F1;o-D&#x00ED;az, 2015</xref>), where individual (morphological alterations; condition factor and fecundity) parameters are used to identify damage in sentinel fishes or population-level metrics (sex-ratio, size frequency distribution as mortality, and reproductive indicators) as indicators of the fish population structure (<xref ref-type="table" rid="tab2">Table 2</xref>). Furthermore, they reported that several ecologically relevant responses at the community level have been used to assess fish community health. For example, environmental degradation or stress results in changes in the number of species (richness), their identity (similarity), and the relative abundance of the species within the community. Similarly, diversity indices are useful for comparing fish communities.</p>
<p>Within East Africa, <xref ref-type="bibr" rid="ref4">Achieng et al. (2021)</xref>, documented changes in fish species richness and composition as indicators of water quality parameters in rivers, Nzoia, Mara, Sondu-Miriu, and Nyando, and other tributaries along Lake Victoria, Kenya. Similar attempts were made in Tanzania, in Shirati Bay (<xref ref-type="bibr" rid="ref198">Waya et al., 2014</xref>) and Nyumba ya Mungu Reservoir (<xref ref-type="bibr" rid="ref111">Mangi et al., 2023</xref>), as well as in selected wetlands impacted by anthropogenic activities along the shores of Lake Victoria in Uganda (<xref ref-type="bibr" rid="ref136">Naigaga et al., 2011</xref>). Fish has also been used in the bioassessment of heavy metals in various rivers in the region, including the Nairobi River, Kenya (<xref ref-type="bibr" rid="ref28">Budambula and Mwachiro, 2006</xref>); Thigithe River, Tanzania (<xref ref-type="bibr" rid="ref120">Mataba et al., 2016</xref>); Sogwe River, Tanzania (<xref ref-type="bibr" rid="ref113">Mapenzi et al., 2020</xref>); and River Rwizi, Uganda (<xref ref-type="bibr" rid="ref17">Basooma et al., 2021</xref>).</p>
<p>Based on fish species sensitivity, various Multimetric Indexes (MMIs) of Biotic Integrity have been developed to assess riverine health in various regions, including East Africa (<xref ref-type="bibr" rid="ref4">Achieng et al., 2021</xref>). MMIs are effective as they can ascertain and distinguish the impacts of different stressors on ecological conditions (<xref ref-type="bibr" rid="ref107">Lunde and Resh, 2012</xref>). Generally, species sensitivity or tolerance of fish has been used as an indicator of the health of ecosystems (<xref ref-type="bibr" rid="ref208">Zeni et al., 2017</xref>; <xref ref-type="bibr" rid="ref26">Brejao et al., 2018</xref>). In the past decades, species sensitivity was based on qualitative personal judgment with minimal ecological, empirical, or physiological information support (<xref ref-type="bibr" rid="ref193">Wang et al., 2018</xref>). However, the Niche Breadth concept using multivariate approaches, including Principal Component Analysis (PCA), has enabled the evaluation of fish taxa response and ecological variability along multiple stressors gradient (<xref ref-type="bibr" rid="ref4001">Achieng et al., 2017</xref>). However, this approach is not applicable to endangered species or species that have a narrow geographical range (<xref ref-type="bibr" rid="ref169">Segurado et al., 2011</xref>).</p>
<p>Knowledge of fish species&#x2019; tolerance to various environmental alarms is crucial for developing ecological indices for monitoring the state of riverine ecosystems. For example, <italic>Labeo victorianus</italic>, <italic>Amphilus jacksonii</italic>, <italic>Clarius gariepinus</italic>, <italic>Enteromius nyanzae</italic>, <italic>Enteromius apleurogramma</italic>, <italic>Enteromius cercops</italic>, <italic>Enteromius kerstenii</italic>, and <italic>Pseudocrenilabrus multicolor</italic> are some of the tolerant fish species reported in Kenyan rivers, while the intolerant species includes <italic>Mormyrus kannume</italic>, <italic>Gnathonesmus longibarbis</italic>, <italic>Barbus neumayeri</italic>, <italic>Barbus altinialis</italic>, <italic>Oreochromis variabilis</italic>, <italic>Schilbe mystus,</italic> and <italic>Bagrus docmak</italic> (<xref ref-type="bibr" rid="ref156">Raburu and Masese, 2012</xref>; <xref ref-type="bibr" rid="ref4">Achieng et al., 2021</xref>). Similarly, a study by <xref ref-type="bibr" rid="ref136">Naigaga et al. (2011)</xref> in Uganda revealed that the abundance and diversity of haplochromine cichlids were greatly influenced by wetlands&#x2019; habitat structure. This infers that haplochromines could be suitable biological indicators for pollution assessment in water systems.</p>
<p>The Fish Index of Biotic Integrity (FIBI) has five categories with 12 metrics that give the ecological status of an ecosystem. The five categories include species richness and composition, trophic function, indicator species or guild, abundance and condition, and reproductive function. FIBI score is calculated from the sum of all the metric ratings. A site with a FIBI score of 58&#x2013;60 is given an excellent status, 48&#x2013;52 being good, 40&#x2013;44 fair, 28&#x2013;34 poor, and 12&#x2013;22 very poor (<xref ref-type="bibr" rid="ref156">Raburu and Masese, 2012</xref>). However, recent studies have found fish to be unsuitable for biomonitoring in Afrotropical high-elevation rivers due to their low diversity (<xref ref-type="bibr" rid="ref149">Osure et al., 2022</xref>; <xref ref-type="bibr" rid="ref157">Raburu et al., 2022</xref>). Furthermore, <xref ref-type="bibr" rid="ref114">Masese et al. (2020)</xref> reported that fish indexes do not reflect the overall state of ecosystem health and fish structure. Despite a substantial decline in fish communities, fish indices have hardly been adopted in many countries in the world as biosystem health indicators (<xref ref-type="bibr" rid="ref99">Kleynhans, 2007</xref>). Furthermore, there is a need to standardize most fish biotic and multimetric indices beyond regions of origin.</p>
</sec>
<sec id="sec8">
<title>Diatoms</title>
<p>Diatoms are primary producers playing a significant role in biochemical cycles and aquatic food webs (<xref ref-type="bibr" rid="ref175">Stevenson et al., 2010</xref>). Diatoms have been widely used as bio-indicators due to their short life cycles and diverse life strategies (<xref ref-type="table" rid="tab2">Table 2</xref>), which respond quickly to various intensities of ecological impairments (<xref ref-type="bibr" rid="ref155">Potapova and Charles, 2003</xref>; <xref ref-type="bibr" rid="ref52">Debenest et al., 2013</xref>; <xref ref-type="bibr" rid="ref122">Mbao et al., 2020</xref>). Changes in diatom community structure and biomass have been shown to reflect ecological and water quality fluctuations, consequently used to assess the chemical, physical, and biological states of ecosystem integrity (<xref ref-type="bibr" rid="ref138">Namwaya et al., 2013</xref>; <xref ref-type="bibr" rid="ref11">Aura et al., 2020</xref>; <xref ref-type="bibr" rid="ref124">Mbao et al., 2022</xref>) in Kenya (<xref ref-type="bibr" rid="ref126">Mills and Ryves, 2012</xref>; <xref ref-type="bibr" rid="ref143">Ochieng et al., 2022</xref>), Uganda, (<xref ref-type="bibr" rid="ref141">Oberg et al., 2012</xref>; <xref ref-type="bibr" rid="ref170">Sekadende et al., 2021</xref>), and Tanzania. Diatom assemblages have been identified as a key indicator characteristic for inferences of ecological conditions in paleolimnological applications and monitoring programs (<xref ref-type="bibr" rid="ref88">Juggins and Birks, 2012</xref>). Furthermore, diatoms are among the significant groups recognized by European Water Framework Directives (WFD) for the identification of rivers&#x2019; ecological integrity (<xref ref-type="bibr" rid="ref65">European Union WFD, 2000</xref>).</p>
<p>Recently, there have been significant developments regarding diatom identification approaches (<xref ref-type="bibr" rid="ref87">John, 2015</xref>; <xref ref-type="bibr" rid="ref102">Lange-Bertalot et al., 2017</xref>; <xref ref-type="bibr" rid="ref123">Mbao et al., 2023</xref>). Initially, morphological studies of diatoms were preferred in monitoring systems health, but today, the new technique of diatom DNA meta-barcoding is gaining preference. Advances in technology have made the taxonomy of diatoms easier through an updated global database: Diatoms of the United States 2016 (<xref ref-type="bibr" rid="ref112">Mann, 2017</xref>), AlgaeBase (<xref ref-type="bibr" rid="ref1010">Guiry and Guiry, 2015</xref>), OMNIDIA 2017, and EDDI 2012 (<xref ref-type="bibr" rid="ref33">Celekli et al., 2021</xref>). Furthermore, recent studies have developed genetic barcoding of epilithic diatom species (<xref ref-type="bibr" rid="ref14">Ballesteros et al., 2020</xref>). Although DNA meta-barcoding is rapidly gaining popularity in water biomonitoring, <xref ref-type="bibr" rid="ref123">Mbao et al. (2023)</xref> reported biases on differences between morphological and molecular-based diatom indices due to the incompleteness of the reference diatom library databases. For universal use of DNA meta-barcoding, they have recommended the use of environmental high-throughput sequencing (HTS) runs, which can easily be related to morphological observations and reference libraries. However, currently, there is no existing reference database or genetic barcoding for East African rivers. Hence, diatom taxonomy knowledge, identification experts, and appropriate high-precision laboratory equipment for identifying diatoms remain the key challenges in adopting the new technique of barcoding in the region.</p>
<p>Globally, many indices have been developed with reference to diatoms indicator values and trophic weights to assess the ecological status of different water bodies (<xref ref-type="bibr" rid="ref96">Kelly et al., 2008</xref>; <xref ref-type="bibr" rid="ref104">Lobo et al., 2015</xref>; <xref ref-type="bibr" rid="ref21">Benito et al., 2018</xref>; <xref ref-type="bibr" rid="ref34">Celekli et al., 2019</xref>). These indices include the Trophic Diatom Index (TDI) in England (<xref ref-type="bibr" rid="ref96">Kelly et al., 2008</xref>), the Trophic Index of Turkey (TIT) (<xref ref-type="bibr" rid="ref34">Celekli et al., 2019</xref>), the Eutrophication/pollution Index (EPI-D) in Italy (<xref ref-type="bibr" rid="ref53">Dell'Uomo and Torrisi, 2011</xref>), the Diatom Ecological Quality Index (DEQI) in Mexico (<xref ref-type="bibr" rid="ref165">Salinas-Camarillo et al., 2020</xref>), the Trophic Water Quality Index (TWQI) in Brazil (<xref ref-type="bibr" rid="ref104">Lobo et al., 2015</xref>), and South Africa Diatom Index (<xref ref-type="bibr" rid="ref84">Harding and Taylor, 2011</xref>).</p>
<p>Diatoms-based indices are regularly applied in ecological monitoring in Uganda (<xref ref-type="bibr" rid="ref126">Mills and Ryves, 2012</xref>), Kenya (<xref ref-type="bibr" rid="ref184">Triest et al., 2012</xref>; <xref ref-type="bibr" rid="ref11">Aura et al., 2020</xref>), and Tanzania (<xref ref-type="bibr" rid="ref170">Sekadende et al., 2021</xref>). However, there is no documentation of indices developed specifically for monitoring African rivers, including East African. <xref ref-type="bibr" rid="ref183">Tomas et al. (2017)</xref> and <xref ref-type="bibr" rid="ref161">Riato et al. (2018)</xref> cautioned against direct application of indices developed in different ecological zones. They noted these indices could produce erroneous results with regard to the state of water quality attributed to differences in ecological variation and land use change (<xref ref-type="bibr" rid="ref38">Charles et al., 2021</xref>). Therefore, there is a need to develop an easy-to-use diatom-based index for system health monitoring in East African rivers, which can be adopted in citizen science.</p>
</sec>
<sec id="sec9">
<title>Ciliates</title>
<p>Ciliates form a pivotal portion of the benthic community and microbial food web by transmitting flux of energy and carbon to lower trophic levels (<xref ref-type="bibr" rid="ref204">Xu et al., 2016</xref>). The functional and taxonomic composition of ciliate communities is driven by ecological variables, such as water quality, hydrology, and grazing pressure (<xref ref-type="bibr" rid="ref191">Vermaat, 2005</xref>; <xref ref-type="bibr" rid="ref94">Kathol et al., 2011</xref>). Past studies indicated that up to 50 species of ciliates are used as bioindicators (<xref ref-type="bibr" rid="ref110">Mandal, 2023</xref>). Their close relationship with the sediments (epibenthic) makes them ideal candidates for monitoring saprobic water quality, especially organic pollution in lotic ecosystems (<xref ref-type="bibr" rid="ref54">Dias et al., 2021</xref>). Furthermore, they are widely distributed, have short lifespans, are very sensitive to ecological pollution, and possess a variety of trophic niches (<xref ref-type="bibr" rid="ref30">Cabral et al., 2017</xref>). Past studies noted that ciliates should be used along with macrozoobenthos in biomonitoring (<xref ref-type="table" rid="tab2">Table 2</xref>). This is because they play a pivotal role in the decomposition process via bacterial consumption and its prompt reaction to a variety of changing factors, including an increase in organic load (<xref ref-type="bibr" rid="ref182">Tirjakova and Vdacny, 2013</xref>).</p>
<p>Ciliates have been used for years as bioindicators in African regions, including South Africa (<xref ref-type="bibr" rid="ref188">Ukomadu, 2012</xref>), Egypt (<xref ref-type="bibr" rid="ref127">Mohammed-Geba et al., 2019</xref>), and Cameroon (<xref ref-type="bibr" rid="ref3">Acha et al., 2022</xref>). However, there is scarce information on their bioindicator use in East African rivers. Recently, there has been a global advancement in ciliates taxonomy through molecular genetic approaches (<xref ref-type="bibr" rid="ref177">Syberg-Olsen et al., 2016</xref>; <xref ref-type="bibr" rid="ref209">Zhao et al., 2018</xref>; <xref ref-type="bibr" rid="ref44">Cordier et al., 2021</xref>), enhancing their use as bioindicators. Furthermore, novel approaches propose a combination of data on ciliate evolution lineages with data on their behavior, biology, ecology, and phenotypes (<xref ref-type="bibr" rid="ref19">Becker et al., 2018</xref>; <xref ref-type="bibr" rid="ref59">Dwyer et al., 2018</xref>). Previous studies documented possible correlations between some taxa evolution and their respective tolerance to the saprobic system (<xref ref-type="bibr" rid="ref31">Carew et al., 2011</xref>; <xref ref-type="bibr" rid="ref80">Gulin et al., 2022</xref>). A phylogenetic signal is a useful tool for analyzing evolutionary changes of organisms, including ciliates, whose evolution has been associated with environmental variations (<xref ref-type="bibr" rid="ref54">Dias et al., 2021</xref>). The necessity of these advanced approaches is unquestionable for the effective use of ciliates as bioindicators, enhancing their comprehensive identification. Freshwater ciliates are also used in environmental bioremediation of heavy metals (<xref ref-type="bibr" rid="ref2">Abraham et al., 2017</xref>) as they form an important component in water purification systems (<xref ref-type="bibr" rid="ref158">Radhakrishnan and Jayaprakas, 2015</xref>; <xref ref-type="bibr" rid="ref50">Debastiani et al., 2016</xref>). Although they act as powerful tools in monitoring and assessment, they are hardly integrated into water quality assessment in East African rivers (<xref ref-type="bibr" rid="ref154">Pawlowski et al., 2018</xref>) due to a lack of expertise in their identification, similar to other bioindicators discussed.</p>
</sec>
<sec id="sec10">
<title>Fungi</title>
<p>Fungi are a group of eukaryotic organisms that include yeasts, molds, and fleshy fungi (<xref ref-type="bibr" rid="ref173">Singara Charya, 2015</xref>). All fungi are heterotrophic, indicating that they get their energy and carbon from organic matter. The majority of fungal nutrition is saprophytic or based on the degradation of organic matter. Fungi play a significant part in the biological processes of many aquatic ecosystems, especially in wetlands and rivers, where they improve water quality. <xref ref-type="bibr" rid="ref57">Duarte et al. (2013)</xref> noted that anthropogenic activities greatly affect fungal community structure and function in river ecosystems. This shows clearly that fungi are essential bioindicators (<xref ref-type="table" rid="tab2">Table 2</xref>) due to their biological diversity, universal distribution, and high sensitivity to environmental modifications with diverse ecological roles (<xref ref-type="bibr" rid="ref194">Warnasuriya et al., 2023</xref>). Fungi bioaccumulate various contaminants, including pesticides, heavy metals, and hydrocarbons, thus able to reflect real-time concentration in a given ecosystem (<xref ref-type="bibr" rid="ref121">Maurya and Pachauri, 2022</xref>).</p>
<p>Contemporary innovations of polymerase chain reaction (PCR) and its variants, next-generation DNA sequencing transcriptome, and metagenomics technologies have opened up opportunities to detect the change in fungal communities and populations more precisely than before (<xref ref-type="bibr" rid="ref194">Warnasuriya et al., 2023</xref>). They can be used at various scales to assess environmental health as they are powerful tools that mirror any negative or positive ecological fluctuations, their levels, and subsequent impacts. However, East African rivers are rarely used in biomonitoring (<xref ref-type="bibr" rid="ref12">Aylagas et al., 2021</xref>) despite having a high growth rate, metabolic activity, and being very sensitive to environmental stressors (<xref ref-type="bibr" rid="ref203">Xie et al., 2016</xref>; <xref ref-type="bibr" rid="ref103">Li et al., 2018</xref>). However, there is a lack of sufficient reference systems and studies with regard to the use of fungi for routine biomonitoring of East African rivers.</p>
</sec>
<sec id="sec11">
<title>Bacteria</title>
<p>Fecal Indicator Bacteria (FIB) is the most reliable bioassessment tool for health risks (<xref ref-type="table" rid="tab2">Table 2</xref>) posed by water pathogens (<xref ref-type="bibr" rid="ref29">Byamukama et al., 2000</xref>). They are found in the gastrointestinal tract of both warm- and cold-blooded animals and are shed in feces together with pathogens. FIB in rivers indicates the possible presence of other enteric pathogens such as <italic>Entamoeba histolytica</italic>, <italic>Vibrio cholera</italic>, <italic>Salmonella typhi</italic>, <italic>Cryptosporidium parvum</italic>, and <italic>Giardia Lamblia,</italic> among others (<xref ref-type="bibr" rid="ref86">Hysko et al., 2010</xref>). <italic>Clostridium perfringens</italic> are the best indicators of remote or old fecal pollution. Furthermore, they indicate health risks, such as antibiotic resistance associated with the consumption of contaminated water (<xref ref-type="bibr" rid="ref148">Omondi, 2021</xref>). The easiest way to evaluate the level of microbial water contamination is by counting colonies (<xref ref-type="bibr" rid="ref206">Yillia et al., 2008</xref>; <xref ref-type="bibr" rid="ref72">Gichana et al., 2014</xref>; <xref ref-type="bibr" rid="ref172">Sila, 2019</xref>; <xref ref-type="bibr" rid="ref148">Omondi, 2021</xref>).</p>
<p>The most commonly used FIB are <italic>Escherichia coli</italic> and Enterococci, which have detected recent pollution. High concentrations exceeding the international WHO recommended levels indicate that water quality is compromised (<xref ref-type="bibr" rid="ref202">World Health Organisation, 2006</xref>). Since total coliforms represent a sum of fecal and non-fecal coliforms, their presence in water is necessarily not an indication of pollution from fecal origin. For example, in river Njoro, the concentrations of <italic>Escherichia coli</italic> and total coliforms were highest downstream with abundant informal settlements close to the river, livestock defecating in the river during watering, and effluents from nearby Nakuru City (<xref ref-type="bibr" rid="ref148">Omondi, 2021</xref>). In Nyakach lower division and Nyogores Rivers, Kenya, high and low concentrations of coliform counts were recorded in the rainy and dry seasons, respectively (<xref ref-type="bibr" rid="ref72">Gichana et al., 2014</xref>; <xref ref-type="bibr" rid="ref147">Olal et al., 2014</xref>). This could be explained as a result of increased runoff and flows from catchment areas during the wet season. High concentrations of coliforms exceeding WHO standards were also reported in shallow wells in Kisumu and Mtwapa Creek, Kenya (<xref ref-type="bibr" rid="ref131">Mutai, 2013</xref>); Nakivubo wetland, Uganda (<xref ref-type="bibr" rid="ref95">Katukiza et al., 2014</xref>; <xref ref-type="bibr" rid="ref68">Fuhrimann et al., 2015</xref>); and Ruvu and Pangani Estuary in Tanzania (<xref ref-type="bibr" rid="ref132">Mwakalobo et al., 2013</xref>).</p>
<p>Membrane filtration (MF) and most probable number (MPN) are methods used for testing coliforms in water (<xref ref-type="bibr" rid="ref7">APHA, 2005</xref>). MPN method is normally conducted in three steps: presumptive test, confirmed test, and completed test, and coliform numbers are estimated as MPN per 100&#x2009;mL from McCrady&#x2019;s statistical tables. MPN is suitable for highly turbid waters, but serial dilutions must be undertaken for better results and precision. MF method, whose analysis is based on the use of a suitable culture medium, followed by counting of colonies, is more sensitive, reliable, and quantitative than MPN. However, the time-consuming enumeration process coupled with expensive and not easily available materials (medium, sterile gridded membrane filters, filtration unit and pump, and colony counter) makes its usability in general water quality monitoring limited, particularly in East Africa.</p>
</sec>
</sec>
<sec id="sec12">
<title>Advancements of water resource users associations river monitoring in East Africa</title>
<p>Globally, water policy reforms have been enacted in many countries. East African countries, including Kenya, instituted major reforms in the water sector, enabling the enactment of <xref ref-type="bibr" rid="ref180">The Water Act (2002)</xref>, which resulted in the establishment of various WRUAs. Thereafter, the Integrated Water Resource Management (IWRM) framework advocates for water resource management from the highest to the lowest level of governance (<xref ref-type="bibr" rid="ref13">Baldwin et al., 2015</xref>). Furthermore, the enactment of the Water Act of 2002, the Kenyan Constitution of 2010, and the revised <xref ref-type="bibr" rid="ref181">The Water Act, 2016</xref> acknowledges the role of WRUAs in resource management at the grass root level (<xref ref-type="bibr" rid="ref181">The Water Act, 2016</xref>). In Tanzania, the Water Management Resource Act of 2009 permits WUA operations on the basis of fulfilling IWRM pillars. WRUAs were established in all catchment areas within Kenya (<xref ref-type="bibr" rid="ref181">The Water Act, 2016</xref>) and Tanzania (<xref ref-type="bibr" rid="ref162">Richards, 2019</xref>). However, Kenya WRA&#x2019;s (2015) performance report indicated that only 56% of anticipated WRUAs had established their operational plans. This calls for relevant stakeholders to support Water Resource User&#x2019;s activities through funding and technical advice.</p>
<p>Over time, WRUAs have transitioned toward the realization of the association&#x2019;s status through registration under the Societies Act, with the support of World Wildlife Funds (WWF), for example, Mara WRUAs covering the entire Mara basin. However, both WRUAs and WUAs have faced a myriad of interlinked challenges, including the inability to bring members together and diverse ecological characteristics between upper and lower catchments, which have made it difficult to achieve their set objectives. In Kenya, this resulted in creating partnerships and collaboration with different allies, including WWF and Water Resource Authority (WRA), which has led to the recognition of many WRUAs along major tributaries: transboundary River Mara in Kenya (upstream) and Tanzania (downstream). In Tanzania, WUAs have collaborated with the Tanzania Forest Service Agency (TFSA), the Africa Wildlife Foundation (AWF), and NGOs toward mitigation and restoration strategies for water resources (<xref ref-type="bibr" rid="ref139">Ngonyani and Mourad, 2019</xref>). In Kenya, the amendment of <xref ref-type="bibr" rid="ref180">The Water Act (2002)</xref> provides a clear guideline on coverage area, resulting in the disintegration of six existing WRUAs into 25 smaller units to conform to the water quality regulation (<xref ref-type="bibr" rid="ref1001">Richards, 2018</xref>). Furthermore, the WWF led the communities in the implementation of activities that generated alternative livelihood and better land use practices toward better management of water resources.</p>
<p>In Uganda, the Water Act (1999), which is the principal law regulating the water sector, adopted decentralization of decision-making, responsibilities, and implementation of the function, leading to the adoption of demand-driven approaches in the water sector (<xref ref-type="bibr" rid="ref135">Naiga and Penker, 2014</xref>). Local Government Act (1997) empowers local government to provide safe water using mobilized and grant resources <xref ref-type="bibr" rid="ref2020">GoU, (1999)</xref>. Furthermore, the Water User Committee (WUC) is the executive organ of the water user group responsible for maintaining, operating, and managing water resources (<xref ref-type="bibr" rid="ref196">Water Aid, 2013</xref>). However, WUC faces a number of challenges, including a lack of participation from the community, inadequate resources, and poor management (<xref ref-type="bibr" rid="ref179">Terry et al., 2015</xref>). As a result, the National Association of Professional Environmentalists (NAPEs) conducted a series of workshops to evaluate, monitor, and improve WUC functions. User-friendly handbooks were developed to permit community users to learn about their rights and responsibilities toward the proper functioning of WUCs (<xref ref-type="bibr" rid="ref179">Terry et al., 2015</xref>). Thus, more requisite institutional structures and collaboration with other various agencies are critical for the effective management and conservation of water resources by communities in East Africa; a key focus of this study to advise on easier ways to strengthen impactful community water quality monitoring.</p>
</sec>
<sec id="sec13">
<title>Biomonitoring approaches suitable for citizen science</title>
<p>A variety of factors influence the selection of an ecosystem assessment and monitoring program, including research costs, human resources, and data requirements (<xref ref-type="bibr" rid="ref140">Norris and Hawkins, 2000</xref>). Biomonitoring of aquatic ecosystems in African systems lags behind other regions due to a lack of financial commitment, technical capacity, and biomonitoring guides. Despite these challenges, there has been a development of several regional or country-specific indices (e.g., <xref ref-type="bibr" rid="ref55">Dickens and Graham, 2002</xref>; <xref ref-type="bibr" rid="ref9">Aschalew and Moog, 2015</xref>; <xref ref-type="bibr" rid="ref91">Kaaya et al., 2015</xref>). The majority of these indices and programs are based on physical and chemical parameters and biological communities (<xref ref-type="bibr" rid="ref11">Aura et al., 2020</xref>), which have been adopted especially in monitoring East African rivers by scientists. Nevertheless, these programs are limited in the quantity of data collected across large spatial and temporal scales (<xref ref-type="bibr" rid="ref5001">Achieng et al., 2020</xref>). Due to the limitations of these indices, researchers have come up with new approaches to river health monitoring, and citizen science has emerged as one of the methods (<xref ref-type="bibr" rid="ref37">Chandler et al., 2017</xref>). At the same time, citizen science offers numerous advantages; in most cases, it is highly content-specific, which could come with limitations, especially on the legibility and reliability of the data collected. Therefore, citizen science should not replace traditional biomonitoring approaches to rivers but complement the scientific monitoring systems.</p>
<p>Citizen science involves community members voluntarily participating in the provision of information or data collection in accordance with a protocol provided, developed, and validated by experts (<xref ref-type="bibr" rid="ref11">Aura et al., 2020</xref>). This is consistent with co-management approaches, which provide stakeholders with a platform for long-term management practices of aquatic resources (<xref ref-type="bibr" rid="ref1717">Obiero et al., 2015</xref>). The citizen science monitoring approach has greatly enhanced the inclusion of citizens in natural resources stewardship monitoring (<xref ref-type="bibr" rid="ref1313">Mochizuki and Yarime, 2016</xref>). Nevertheless, the development of citizen science as a natural resource assessment and monitoring approach is quite limited in Africa, and in most cases, it is in its nascent state (<xref ref-type="bibr" rid="ref160">Requier et al., 2020</xref>). Citizen science has the potential to directly connect scientists to the public and share the significance of their research (<xref ref-type="bibr" rid="ref7001">Crocker et al., 2019</xref>), enhancing public participation in scientific research.</p>
<p>There is a paucity of information on the application of citizen science in environmental monitoring, especially in many African countries (<xref ref-type="bibr" rid="ref160">Requier et al., 2020</xref>). Nevertheless, <xref ref-type="bibr" rid="ref11">Aura et al. (2020)</xref> tried to address the need for its application where they developed a &#x201C;Citizen Index of Ecological Integrity (CIEI)&#x201D; for assessing and monitoring the ecological status of African riverine ecosystems in Lake Victoria. Furthermore, <xref ref-type="bibr" rid="ref1616">Njue et al. (2021)</xref> used a contributory citizen science approach to determine the spatiotemporal turbidity and suspended sediment dynamics in the Sondu-Miriu river basin, western Kenya. This implies that citizen science could be strategically the voice of the future to produce pertinent management-oriented knowledge and create collaborations among the stakeholders to fill the data and information gaps at a reasonable cost.</p>
</sec>
<sec id="sec14">
<title>Case studies of successful application of citizen science in river monitoring</title>
<p>Citizen science in many African countries is a new phenomenon and is worse off in East Africa despite having been well-established in other countries. The following review discusses successful citizen monitoring initiatives both in Africa and other countries. One of the best examples of citizen science monitoring in Africa is Burkina Faso (West Africa), where fishermen were involved in fish sampling under the Sustainable Management of Water and Fish Resources (SUSFISH) project. The goal of the project was to strengthen capacities for science, policy, and practice and establish a basis for water quality and sustainable fisheries in Burkina Faso. Fishermen took an active role in the project by informing scientists where to sample and how to perform traditional cast net fishing. Fish sorting and identification (up to species level) were done in the field. Fish that could not be identified at the species level were preserved in 70% alcohol and taken to the laboratory for identification by professionals (<xref ref-type="bibr" rid="ref125">Melcher et al., 2020</xref>).</p>
<p>Mini Stream Assessment Scoring System (miniSASS) was developed in South Africa for citizen scientists to assess river health in South Africa (<xref ref-type="bibr" rid="ref55">Dickens and Graham, 2002</xref>; <xref ref-type="bibr" rid="ref8001">Graham et al., 2004</xref>). The miniSASS was developed from SASS, which required users to have the ability to identify at least 90 macroinvertebrate families. A statistical evaluation proved that miniSASS and SASS gave similar results (<xref ref-type="bibr" rid="ref8001">Graham et al., 2004</xref>). It involved sampling macroinvertebrates in a river, identifying them in the field in broad categories, and then calculating the river health index. However, the volunteers use a dichotomous key, which is available only on the miniSASS website, and record results obtained on an online portal. Although a large amount of data can be generated from citizen scientists, the validity of this data may be a concern depending on the level of training the volunteers have been exposed to. MiniSASS has been applied in monitoring aquatic resources in Kenya, especially the &#x2018;Adopt-a-River Initiative&#x2019; project, which exemplifies how key curricula components can be used to solve real challenges (<xref ref-type="bibr" rid="ref195">Waswala et al., 2019</xref>). In this project, the public, especially the youth, are mobilized to manage the aquatic resources around them through the identification of polluted sites in the Nairobi River Catchment, with the aim of enhancing environmental regulations to ensure ecosystem health.</p>
<p>Elsewhere, several examples of successful citizen science monitoring do exist. The Anglers` Riverfly Monitoring Initiative (ARMI) is a citizen science project for water quality assessment in the United Kingdom (UK) (<xref ref-type="bibr" rid="ref27">Brooks et al., 2019</xref>). Volunteers sample macroinvertebrates at each site once a month by kicking (for 3&#x2009;min) habitats present at a site using a sampling net (250-mm frame and 500-mm deep net bag with 1-mm mesh). Large stones from the river bed are brushed in the mouth of the net to dislodge any organisms that have not been collected in the sampling net. Contents of the sampling net are emptied in a sorting tray, and macroinvertebrate taxa are identified and estimated to log<sub>10</sub> scale abundance. The macroinvertebrate taxa used as bioindicators the following: cased Trichoptera, caseless Trichoptera (caddisfy), Ephemeridae (mayfly), Ephemerellidae (blue-winged olive), Baetidae (olives), Heptageniidae (fat-bodied mayfly), Plecoptera (stonefly), and Gammaridae (shrimp). The choice of the taxa is based on ease of identification, range sensitivity to pollution, national applicability, present year-round (with the exception of Ephemerellidae), and is familiar to most anglers. A score is allocated to the log<sub>10</sub> abundance category for each taxon, and the scores of all the target groups are added. Volunteers are trained at a 1-day workshop before participating in the ARMI monitoring program. River coordinators for each catchment are in charge of organizing volunteers and uploading data onto the national database held at the Freshwater Biological Association, although some choose not to upload their data.</p>
<p>In Spain, RiuNet<xref ref-type="fn" rid="fn0001"><sup>1</sup></xref> was initiated by the Ecology Department of the University of Barcelona. Volunteers assess river water quality with simplified protocols available in the RiuNet handbook<xref ref-type="fn" rid="fn0002"><sup>2</sup></xref>. Macroinvertebrates are identified at the family level using pictures or dichotomous keys available on the RiuNet app. Volunteers identify insects (Diptera, Coleoptera, Odonata, Heteroptera, Trichoptera, Ephemeroptera, and Plecoptera) and taxa from the Mollusca, Oligochaeta, Hirudinea, and Crustacea. Volunteers sample each site twice every year, in spring and autumn. The RiuNet app automatically calculates a simplified biological quality index. The RiuNet project does not have a training program for volunteers. However, citizen scientists learn from the RiuNet app, which guides them on how to assess the ecological status of a river.</p>
<p>Save-our-Streams (SOS) program is a citizen science monitoring program in the USA. The SOS program mainly focused on observations of water odor, color, and the presence of trash in streams. Macroinvertebrates were added to the monitoring program later on with the aim of assessing stream degradation (<xref ref-type="bibr" rid="ref64">Engel, 2000</xref>). Virginia SOS sampling protocol has three kick net samples. A kick net of 1,500&#x2009;&#x03BC;m mesh size is held in a rifle by a volunteer, and an area of 1m<sup>2</sup> is kicked in front of the net. The net is taken to the stream shore, where sorting and identification of macroinvertebrates are done based on previous training and simple pictures. Identification is mostly at the order level and, in some cases, at the family level. Data from each kick net sample is recorded in an assessment sheet, and then the SOS water quality rating score is calculated (each kick net sample is scored individually). Volunteers must undergo training and certification processes to participate in the monitoring program. The Department of Environmental Quality in Virginia signed a memorandum of agreement with the Virginia SOS program to use their data but with a quality control plan.</p>
</sec>
<sec id="sec15">
<title>Easily implementable community-based biomonitoring approaches</title>
<p>In river catchment management, local communities are key stakeholders, and their participation has been agreed upon as an important element in delivering water-related decisions (<xref ref-type="bibr" rid="ref163">Rolston et al., 2017</xref>). However, sometimes bottom-up, community-led, catchment-based approaches to land and water management tend to provide new challenges to policymakers (<xref ref-type="bibr" rid="ref81">Gurney et al., 2016</xref>) since community priorities may vary according to local values and pressures (<xref ref-type="bibr" rid="ref163">Rolston et al., 2017</xref>). To advance citizen science in river water quality monitoring as a system health indicator, cheap, simple, easy-to-use approaches using the most common bioindicators are required and proposed in the following section.</p>
<sec id="sec16">
<title>Macroinvertebrate-based protocol suitable for citizen science</title>
<p>From the review above, macroinvertebrates have the potential to be used as bioindicators by local riparian communities. Their use requires simple training and easy identification equipment coupled with simple sampling procedures, which can use a wide range of easily available materials: normal household sieves, sweep nets, mosquito nets, toothbrushes for scrubbing stones, buckets, and trays, among others. Therefore, based on this review, an intolerance/tolerance macroinvertebrate metric that includes numbers of pollution tolerant and intolerant groups (taxa) (<xref ref-type="table" rid="tab3">Table 3</xref>) is recommended as an applicable tool for citizen science monitoring of water quality in rivers. With basic training and the provision of simple photographic chats, communities can easily identify key macroinvertebrates, either the intolerant, mayflies, stoneflies, and caddisflies whose scientific names are Ephemeroptera, Plecoptera, and Trichoptera (EPT), respectively, or the tolerant families comprising true flies and worms, scientifically referred to as Diptera and Oligochaeta, respectively. The communities using the pictorial chart (<xref ref-type="fig" rid="fig1">Plate 1</xref>) can easily relate these organisms to their local names. Nearly all families in the EPT group are sensitive to pollution. The numbers of each group of macroinvertebrates indicate the water quality and the system&#x2019;s ecological quality. For example, the EPT group is higher than Diptera and Oligochaeta at pristine or minimally disturbed sites and vice versa.</p>
<table-wrap position="float" id="tab3">
<label>Table 3</label>
<caption>
<p>River health assessment sheet with selected macroinvertebrate taxa for easy use in citizen science.</p>
</caption>
<table frame="hsides" rules="groups">
<tbody>
<tr>
<td align="left" valign="top">
<inline-graphic xlink:href="frwa-06-1360941-i001.tif"/>
</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig position="float" id="fig1">
<label>PLATE 1</label>
<caption>
<p>A user-friendly pictorial macroinvertebrate identification key in relation to water quality, suitable for citizen scientists (Photos by Priscilla Wangari and others adopted from <xref ref-type="bibr" rid="ref71">Gerber and Gabriel, 2002</xref>).</p>
</caption>
<graphic xlink:href="frwa-06-1360941-g001.tif"/>
</fig>
<p>The community should be able to select a sampling site within the river. The site should have different habitats, including areas that are shallow with fast-flowing water (riffle habitat) and a deep, slow-flowing water section (pool habitat). Macroinvertebrates are collected from the selected habitat outlined above using a kick net of approximately 500&#x2009;&#x03BC;m mesh size. Stones, bedrock, or underlying layer (benthic substrate) in the habitats are sampled by kicking for approximately 30&#x2009;s to dislodge the invertebrates, which are collected in the net (kick net). The contents of the net are then transferred in a white tray or basin by inverting the net, such that the mouth is placed on the white tray and flushed with water to ensure that macroinvertebrates do not remain in it. In case a kick net is not available, stones or the benthic substrate are picked randomly at the chosen habitat for 1&#x2009;min. The stones and any other substrate collected are placed on a white tray or basin and brushed on all sides to dislodge attached organisms. The collected macroinvertebrates are identified using the provided simplified colored identification keys for the selected order EPT, Diptera, and Oligocheta (<xref ref-type="fig" rid="fig1">Plate 1</xref>) and counted in the field.</p>
<p>However, the community volunteers may not have the taxonomic experience to identify the invertebrates at much lower taxonomic levels. Thus, to avoid data inaccuracy, macroinvertebrates are identified at the order level for EPT and Diptera and subclass level for Oligochaeta. After counting, the sample is poured back into the stream. The counted results are interpreted in terms of water quality and ecological status of the system. For example, a site with good ecological status has a higher number of EPT than Diptera and Oligochaeta (<xref ref-type="table" rid="tab3">Table 3</xref>).</p>
<p>It is important for the community volunteers to understand that some families in the EPT group (Caenidae, Hydropsychidae, and Baetidae) can tolerate pollution and thus affect the performance of the EPT metric (<xref ref-type="bibr" rid="ref117">Masese and Raburu, 2017</xref>). In situations where EPT does not give a conclusive ecological status of a site, an experienced macroinvertebrate taxonomist is sought to give the best professional judgment.</p>
</sec>
<sec id="sec17">
<title>Fish-based protocol</title>
<p>Although fish are sensitive to pressures, they have low diversity in high-elevation rivers (<xref ref-type="bibr" rid="ref149">Osure et al., 2022</xref>; <xref ref-type="bibr" rid="ref157">Raburu et al., 2022</xref>; <xref ref-type="bibr" rid="ref167">Schmidt et al., 2022</xref>). Therefore, community-based biomonitoring using fish may be suitable in lowland rivers.</p>
<p>Fish sampling is undertaken using traditional cast-net fishing by community volunteers with assistance from professional fishermen. A cast net with 10&#x2009;mm mesh size and 4.3&#x2009;m diameter or 25&#x2009;mm mesh size and 4.5&#x2009;m diameter can be used depending on availability (<xref ref-type="bibr" rid="ref125">Melcher et al., 2020</xref>). The cast net is thrown into the river, retrieved, and the contents are emptied into a bucket. The number of throws is recorded for easy comparison of results. At sites with deep waters, where wading is impossible, canoes can be used for navigation (<xref ref-type="bibr" rid="ref125">Melcher et al., 2020</xref>). The fish collected are identified in the field to genus level, counted, and the live ones returned to the water. A river with good ecological status should have a higher number of intolerant fish than tolerant fish, as shown in <xref ref-type="table" rid="tab4">Table 4</xref>.</p>
<table-wrap position="float" id="tab4">
<label>Table 4</label>
<caption>
<p>River health assessment sheet with selected fish taxa for use in citizen science.</p>
</caption>
<table frame="hsides" rules="groups">
<tbody>
<tr>
<td align="left" valign="top">
<inline-graphic xlink:href="frwa-06-1360941-i002.tif"/>
</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="sec18">
<title>Presentation/storage/usage of data collected by communities</title>
<p>After filling in the assessment sheet, a photograph of the assessment sheet is taken by the volunteer and uploaded on Google Drive or an easy-to-use APP developed for the data management of river water quality and as a backup. The drive or APP used should be easily accessible to volunteers, identified professional macroinvertebrates, fish taxonomists, and government officials (catchment water manager, county government official) to provide the basis for the development of management strategies. Hard copies of assessment sheets should be kept safely by the chairperson or a member of WRUA/WUA or its equivalent for future reference.</p>
</sec>
</sec>
<sec sec-type="conclusions" id="sec19">
<title>Conclusion</title>
<p>Macroinvertebrates and fish are useful bioindicators of river health. The East African countries should embrace this approach as a block for easy comparison of the ecological status of rivers within the region, including the transboundary systems. The countries lagging behind, Kenya and Uganda, should develop their own indices and assessment tools using foundations from the already developed regional indices, such as TARISS from Tanzania. Enhancing citizen science in system health monitoring is the future management strategy for raising awareness, bridging the gap between users, policymakers, and scientific findings, and interpreting social-ecological information. This review advocates for the use of a community-based biomonitoring approach using macroinvertebrates and fish.</p>
</sec>
<sec sec-type="author-contributions" id="sec20">
<title>Author contributions</title>
<p>NK: Conceptualization, Data curation, Formal analysis, Investigation, Supervision, Validation, Visualization, Writing &#x2013; review &#x0026; editing. LO: Data curation, Formal analysis, Investigation, Writing &#x2013; review &#x0026; editing. PM: Data curation, Formal analysis, Investigation, Writing &#x2013; review &#x0026; editing. AB: Data curation, Formal analysis, Validation, Writing &#x2013; review &#x0026; editing. AM: Data curation, Formal analysis, Validation, Writing &#x2013; review &#x0026; editing. GS: Validation, Writing &#x2013; review &#x0026; editing.</p>
</sec>
</body>
<back>
<sec sec-type="funding-information" id="sec21">
<title>Funding</title>
<p>The author(s) declare that no financial support was received for the research, authorship, and/or publication of this article.</p>
</sec>
<ack>
<p>The authors are thankful to the Strengthening Community-based Research for River Health and Climate Change Mitigation in Eastern Africa (STREM) Project funded by Africa Uni-Net for providing the necessary infrastructure to complete this study.</p>
</ack>
<sec sec-type="COI-statement" id="sec22">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="sec23">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<fn-group>
<fn id="fn0001">
<p><sup>1</sup><ext-link xlink:href="http://www.riunet.net" ext-link-type="uri">www.riunet.net</ext-link></p>
</fn>
<fn id="fn0002">
<p><sup>2</sup><ext-link xlink:href="https://www.ub.edu/fem/docs/Riunet/RiuNet_manual_ENG.pdf" ext-link-type="uri">https://www.ub.edu/fem/docs/Riunet/RiuNet_manual_ENG.pdf</ext-link></p>
</fn>
</fn-group>
<ref-list>
<title>References</title>
<ref id="ref1"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Abdelkarim</surname> <given-names>M. S.</given-names></name></person-group> (<year>2020</year>). <article-title>Biomonitoring and bioassessment of running water quality in developing countries: a case study from Egypt</article-title>. <source>Egypt. J. Aquatic Res.</source> <volume>46</volume>, <fpage>313</fpage>&#x2013;<lpage>324</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ejar.2020.11.003</pub-id></citation></ref>
<ref id="ref2"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Abraham</surname> <given-names>J. S.</given-names></name> <name><surname>Sripoorna</surname> <given-names>S.</given-names></name> <name><surname>Choudhary</surname> <given-names>A.</given-names></name> <name><surname>Toteja</surname> <given-names>R.</given-names></name> <name><surname>Gupta</surname> <given-names>R.</given-names></name> <name><surname>Makhija</surname> <given-names>S.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>Assessment of heavy metal toxicity in four species of freshwater ciliates (Spirotrichea: Ciliophora) from Delhi, India</article-title>. <source>Curr. Sci.</source> <volume>113</volume>, <fpage>2141</fpage>&#x2013;<lpage>2150</lpage>. doi: <pub-id pub-id-type="doi">10.18520/cs/v113/i11/2141-2150</pub-id></citation></ref>
<ref id="ref3"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Acha</surname> <given-names>A. Y.</given-names></name> <name><surname>William</surname> <given-names>A. M.</given-names></name> <name><surname>Gideon</surname> <given-names>A. A.</given-names></name></person-group> (<year>2022</year>). <article-title>Use of ciliated protozoans in the saprobic evaluation of hydrosystems in an equatorial zone (south region of Cameroon)</article-title>. <source>Afr. J. Environ. Sci. Technol.</source> <volume>16</volume>, <fpage>295</fpage>&#x2013;<lpage>310</lpage>. doi: <pub-id pub-id-type="doi">10.5897/AJEST2022.3117</pub-id></citation></ref>
<ref id="ref4001"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Achieng</surname> <given-names>A. O.</given-names></name> <name><surname>Raburu</surname> <given-names>P. O.</given-names></name> <name><surname>Kipkorir</surname> <given-names>E. C.</given-names></name> <name><surname>Ngodhe</surname> <given-names>S. O.</given-names></name> <name><surname>Obiero</surname> <given-names>K. O.</given-names></name> <name><surname>Ani-Sabwa</surname> <given-names>J.</given-names></name></person-group> (<year>2017</year>). <article-title>Assessment of water quality using multivariate techniques in River Sosiani, Kenya</article-title>. <source>Environ. Monit. Assess</source> <volume>189</volume>:<fpage>280</fpage>. doi: <pub-id pub-id-type="doi">10.1007/s10661-017-5992-5</pub-id></citation></ref>
<ref id="ref5001"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Achieng</surname> <given-names>A. O.</given-names></name> <name><surname>Masese</surname> <given-names>F. O.</given-names></name> <name><surname>Kaunda-Arara</surname> <given-names>B.</given-names></name></person-group> (<year>2020</year>). <article-title>Fish assemblages and size-spectra variation among rivers of Lake Victoria Basin, Kenya</article-title>. <source>Ecological Indicators</source> <volume>118</volume>:<fpage>106745</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2020.106745</pub-id></citation></ref>
<ref id="ref4"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Achieng</surname> <given-names>A. O.</given-names></name> <name><surname>Masese</surname> <given-names>F. O.</given-names></name> <name><surname>Coffey</surname> <given-names>T. J.</given-names></name> <name><surname>Raburu</surname> <given-names>P. O.</given-names></name> <name><surname>Agembe</surname> <given-names>S. W.</given-names></name> <name><surname>Febria</surname> <given-names>C. M.</given-names></name> <etal/></person-group>. (<year>2021</year>). <article-title>Assessment of the ecological health of Afrotropical rivers using fish assemblages: a case study of selected rivers in the Lake Victoria Basin, Kenya</article-title>. <source>Front. Water</source> <volume>2</volume>:<fpage>620704</fpage>. doi: <pub-id pub-id-type="doi">10.3389/frwa.2020.620704</pub-id></citation></ref>
<ref id="ref5"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Agarwal</surname> <given-names>A.</given-names></name> <name><surname>de los Angeles</surname> <given-names>M. S.</given-names></name> <name><surname>Bhatia</surname> <given-names>R.</given-names></name> <name><surname>Ch&#x00E9;ret</surname> <given-names>I.</given-names></name> <name><surname>Davila-Poblete</surname> <given-names>S.</given-names></name> <name><surname>Falkenmark</surname> <given-names>M.</given-names></name> <etal/></person-group>. (<year>2000</year>). <source>Integrated water resources management</source>. <publisher-loc>Stockholm</publisher-loc>: <publisher-name>Global water Partnership</publisher-name>, <fpage>1</fpage>&#x2013;<lpage>67</lpage>.</citation></ref>
<ref id="ref6"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Allouche</surname> <given-names>J.</given-names></name></person-group> (<year>2016</year>). <article-title>The birth and spread of IWRM-A case study of global policy diffusion and translation</article-title>. <source>Water Alternatives</source> <volume>9</volume>, <fpage>412</fpage>&#x2013;<lpage>433</lpage>.</citation></ref>
<ref id="ref7"><citation citation-type="book"><person-group person-group-type="author"><collab id="coll1">APHA</collab></person-group> (<year>2005</year>). <source>Standard methods for the examination of water and wastewater</source>. <edition>21st</edition> Edn. <publisher-loc>Washington, DC</publisher-loc>: <publisher-name>American Public Health Association</publisher-name>.</citation></ref>
<ref id="ref8"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Areco</surname> <given-names>M. M.</given-names></name> <name><surname>Salomone</surname> <given-names>V. N.</given-names></name> <name><surname>dos Santos Afonso</surname> <given-names>M.</given-names></name></person-group> (<year>2021</year>). <article-title><italic>Ulva lactuca</italic>: a bioindicator for anthropogenic contamination and its environmental remediation capacity</article-title>. <source>Mar. Environ. Res.</source> <volume>171</volume>:<fpage>105468</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.marenvres.2021.105468</pub-id>, PMID: <pub-id pub-id-type="pmid">34507027</pub-id></citation></ref>
<ref id="ref9"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Aschalew</surname> <given-names>L.</given-names></name> <name><surname>Moog</surname> <given-names>O.</given-names></name></person-group> (<year>2015</year>). <article-title>Benthic macroinvertebrates based new biotic score &#x201C;ETHbios&#x201D; for assessing ecological conditions of highland streams and rivers in Ethiopia</article-title>. <source>Limnologica</source> <volume>52</volume>, <fpage>11</fpage>&#x2013;<lpage>19</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.limno.2015.02.002</pub-id></citation></ref>
<ref id="ref10"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Aura</surname> <given-names>C. M.</given-names></name> <name><surname>Nyamweya</surname> <given-names>C. S.</given-names></name> <name><surname>Owiti</surname> <given-names>H.</given-names></name> <name><surname>Odoli</surname> <given-names>C.</given-names></name> <name><surname>Musa</surname> <given-names>S.</given-names></name> <name><surname>Njiru</surname> <given-names>J. M.</given-names></name> <etal/></person-group>. (<year>2021</year>). <article-title>Citizen science for bio-indication: development of a community-based index of ecosystem integrity for assessing the status of afrotropical riverine ecosystems</article-title>. <source>Front. Water</source> <volume>2</volume>:<fpage>609215</fpage>. doi: <pub-id pub-id-type="doi">10.3389/frwa.2020.609215</pub-id></citation></ref>
<ref id="ref11"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Aura</surname> <given-names>C. M.</given-names></name> <name><surname>Odoli</surname> <given-names>C.</given-names></name> <name><surname>Nyamweya</surname> <given-names>C. S.</given-names></name> <name><surname>Njiru</surname> <given-names>J. M.</given-names></name> <name><surname>Musa</surname> <given-names>S.</given-names></name> <name><surname>Miruka</surname> <given-names>J. B.</given-names></name> <etal/></person-group>. (<year>2020</year>). <article-title>Application of phytoplankton community structure for ranking the major riverine catchments influencing the pollution status of a lake basin</article-title>. <source>Lakes Reserv. Res. Manag.</source> <volume>25</volume>, <fpage>3</fpage>&#x2013;<lpage>17</lpage>. doi: <pub-id pub-id-type="doi">10.1111/lre.12307</pub-id></citation></ref>
<ref id="ref12"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Aylagas</surname> <given-names>E.</given-names></name> <name><surname>Atalah</surname> <given-names>J.</given-names></name> <name><surname>Sanchez-Jerez</surname> <given-names>P.</given-names></name> <name><surname>Pearman</surname> <given-names>J. K.</given-names></name> <name><surname>Casado</surname> <given-names>N.</given-names></name> <name><surname>Asensi</surname> <given-names>J.</given-names></name> <etal/></person-group>. (<year>2021</year>). <article-title>A step towards the validation of bacteria biotic indices using DNA metabarcoding for benthic monitoring</article-title>. <source>Mol. Ecol. Resour.</source> <volume>21</volume>, <fpage>1889</fpage>&#x2013;<lpage>1903</lpage>. doi: <pub-id pub-id-type="doi">10.1111/1755-0998.13395</pub-id>, PMID: <pub-id pub-id-type="pmid">33825307</pub-id></citation></ref>
<ref id="ref13"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Baldwin</surname> <given-names>E.</given-names></name> <name><surname>Washington-Ottombre</surname> <given-names>C.</given-names></name> <name><surname>Dell'Angelo</surname> <given-names>J.</given-names></name> <name><surname>Cole</surname> <given-names>D.</given-names></name> <name><surname>Evans</surname> <given-names>T.</given-names></name></person-group> (<year>2015</year>). <article-title>Polycentric governance and irrigation reform in Kenya</article-title>. <source>Governance</source> <volume>29</volume>, <fpage>207</fpage>&#x2013;<lpage>225</lpage>. doi: <pub-id pub-id-type="doi">10.1111/gove.12160</pub-id></citation></ref>
<ref id="ref14"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ballesteros</surname> <given-names>I.</given-names></name> <name><surname>Castillejo</surname> <given-names>P.</given-names></name> <name><surname>Haro</surname> <given-names>A. P.</given-names></name> <name><surname>Montes</surname> <given-names>C. C.</given-names></name> <name><surname>Heinrich</surname> <given-names>C.</given-names></name> <name><surname>Lobo</surname> <given-names>E. A.</given-names></name></person-group> (<year>2020</year>). <article-title>Genetic barcoding of Ecuadorian epilithic diatom species suitable as water quality bioindicators</article-title>. <source>C. R. Biol.</source> <volume>343</volume>, <fpage>41</fpage>&#x2013;<lpage>52</lpage>. doi: <pub-id pub-id-type="doi">10.5802/crbiol.2</pub-id>, PMID: <pub-id pub-id-type="pmid">32720487</pub-id></citation></ref>
<ref id="ref15"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Barbour</surname> <given-names>M. T.</given-names></name> <name><surname>Paul</surname> <given-names>M. J.</given-names></name></person-group> (<year>2010</year>). <article-title>Adding value to water resource management through biological assessment of rivers</article-title>. <source>Hydrobiologia</source> <volume>651</volume>, <fpage>17</fpage>&#x2013;<lpage>24</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10750-010-0287-7</pub-id></citation></ref>
<ref id="ref16"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Barbour</surname> <given-names>M. T.</given-names></name> <name><surname>Swietlik</surname> <given-names>W. F.</given-names></name> <name><surname>Jackson</surname> <given-names>S. K.</given-names></name> <name><surname>Courtemanch</surname> <given-names>D. L.</given-names></name> <name><surname>Davies</surname> <given-names>S. P.</given-names></name> <name><surname>Yoder</surname> <given-names>C. O.</given-names></name></person-group> (<year>2000</year>). <article-title>Measuring the attainment of biological integrity in the USA: a critical element of ecological integrity</article-title>. <source>Hydrobiologia</source> <volume>422</volume>, <fpage>453</fpage>&#x2013;<lpage>464</lpage>. doi: <pub-id pub-id-type="doi">10.1023/A:1017095003609</pub-id></citation></ref>
<ref id="ref17"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Basooma</surname> <given-names>A.</given-names></name> <name><surname>Teunen</surname> <given-names>L.</given-names></name> <name><surname>Semwanga</surname> <given-names>N.</given-names></name> <name><surname>Bervoets</surname> <given-names>L.</given-names></name></person-group> (<year>2021</year>). <article-title>Trace metal concentrations in the abiotic and biotic components of river Rwizi ecosystem in western Uganda, and the risks to human health</article-title>. <source>Heliyon</source> <volume>7</volume>:<fpage>e08327</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.heliyon.2021.e08327</pub-id>, PMID: <pub-id pub-id-type="pmid">34816035</pub-id></citation></ref>
<ref id="ref18"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Beck</surname> <given-names>W. M.</given-names></name></person-group> (<year>1954</year>). <article-title>Studies in stream pollution biology: I. A simplified ecological classification of organisms</article-title>. <source>Q. J. Florida Acad. Sci.</source> <volume>17</volume>, <fpage>211</fpage>&#x2013;<lpage>227</lpage>.</citation></ref>
<ref id="ref19"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Becker</surname> <given-names>D. J.</given-names></name> <name><surname>Chumchal</surname> <given-names>M. M.</given-names></name> <name><surname>Broders</surname> <given-names>H. G.</given-names></name> <name><surname>Korstian</surname> <given-names>J. M.</given-names></name> <name><surname>Clare</surname> <given-names>E. L.</given-names></name> <name><surname>Rainwater</surname> <given-names>T. R.</given-names></name> <etal/></person-group>. (<year>2018</year>). <article-title>Mercury bioaccumulation in bats reflects dietary connectivity to aquatic food webs</article-title>. <source>Environ. Pollut.</source> <volume>233</volume>, <fpage>1076</fpage>&#x2013;<lpage>1085</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.envpol.2017.10.010</pub-id>, PMID: <pub-id pub-id-type="pmid">29042136</pub-id></citation></ref>
<ref id="ref20"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Beentjes</surname> <given-names>K. K.</given-names></name> <name><surname>Speksnijder</surname> <given-names>A. G.</given-names></name> <name><surname>Schilthuizen</surname> <given-names>M.</given-names></name> <name><surname>Hoogeveen</surname> <given-names>M.</given-names></name> <name><surname>Pastoor</surname> <given-names>R.</given-names></name> <name><surname>van der Hoorn</surname> <given-names>B. B.</given-names></name></person-group> (<year>2019</year>). <article-title>Increased performance of DNA metabarcoding of macroinvertebrates by taxonomic sorting</article-title>. <source>PLoS One</source> <volume>14</volume>:<fpage>e0226527</fpage>. doi: <pub-id pub-id-type="doi">10.1371/journal.pone.0226527</pub-id>, PMID: <pub-id pub-id-type="pmid">31841568</pub-id></citation></ref>
<ref id="ref21"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Benito</surname> <given-names>X.</given-names></name> <name><surname>Fritz</surname> <given-names>S. C.</given-names></name> <name><surname>Steinitz-Kannan</surname> <given-names>M.</given-names></name> <name><surname>Tapia</surname> <given-names>P. M.</given-names></name> <name><surname>Kelly</surname> <given-names>M. A.</given-names></name> <name><surname>Lowell</surname> <given-names>T. V.</given-names></name></person-group> (<year>2018</year>). <article-title>Geo-climatic factors drive diatom community distribution in tropical south American freshwaters</article-title>. <source>J. Ecol.</source> <volume>106</volume>, <fpage>1660</fpage>&#x2013;<lpage>1672</lpage>. doi: <pub-id pub-id-type="doi">10.1111/1365-2745.12934</pub-id></citation></ref>
<ref id="ref22"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Benjamin</surname> <given-names>J. M.</given-names></name> <name><surname>Abuya</surname> <given-names>D.</given-names></name> <name><surname>Omollo</surname> <given-names>B.</given-names></name> <name><surname>M&#x2019;Eerimba</surname> <given-names>C.</given-names></name></person-group> (<year>2023</year>). <article-title>Longitudinal patterns of abundance, diversity and functional feeding guilds of benthic communities in east African tropical high-altitude streams</article-title>. <source>Afr. J. Ecol.</source> <volume>61</volume>, <fpage>781</fpage>&#x2013;<lpage>793</lpage>. doi: <pub-id pub-id-type="doi">10.1111/aje.13177</pub-id></citation></ref>
<ref id="ref23"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bere</surname> <given-names>T.</given-names></name> <name><surname>Nyamupingidza</surname> <given-names>B. B.</given-names></name></person-group> (<year>2014</year>). <article-title>Use of biological monitoring tools beyond their country of origin: a case study of the south African scoring system version 5 (SASS5)</article-title>. <source>Hydrobiologia</source> <volume>722</volume>, <fpage>223</fpage>&#x2013;<lpage>232</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10750-013-1702-7</pub-id></citation></ref>
<ref id="ref24"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Birk</surname> <given-names>S.</given-names></name> <name><surname>Bonne</surname> <given-names>W.</given-names></name> <name><surname>Borja</surname> <given-names>A.</given-names></name> <name><surname>Brucet</surname> <given-names>S.</given-names></name> <name><surname>Courrat</surname> <given-names>A.</given-names></name> <name><surname>Poikane</surname> <given-names>S.</given-names></name> <etal/></person-group>. (<year>2012</year>). <article-title>Three hundred ways to assess Europe's surface waters: an almost complete overview of biological methods to implement the water framework directive</article-title>. <source>Ecol. Indic.</source> <volume>18</volume>, <fpage>31</fpage>&#x2013;<lpage>41</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2011.10.009</pub-id></citation></ref>
<ref id="ref25"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bowler</surname> <given-names>D.</given-names></name> <name><surname>Bohning-Gaese</surname> <given-names>K.</given-names></name></person-group> (<year>2017</year>). <article-title>Improving the community-temperature index as a climate change indicator</article-title>. <source>PLoS One</source> <volume>12</volume>:<fpage>e0184275</fpage>. doi: <pub-id pub-id-type="doi">10.1371/journal.pone.0184275</pub-id>, PMID: <pub-id pub-id-type="pmid">28898285</pub-id></citation></ref>
<ref id="ref26"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brejao</surname> <given-names>G. L.</given-names></name> <name><surname>Hoeinghaus</surname> <given-names>D. J.</given-names></name> <name><surname>Perez-Mayorga</surname> <given-names>M. A.</given-names></name> <name><surname>Ferraz</surname> <given-names>S. F.</given-names></name> <name><surname>Casatti</surname> <given-names>L.</given-names></name></person-group> (<year>2018</year>). <article-title>Threshold responses of Amazonian stream fishes to timing and extent of deforestation</article-title>. <source>Conserv. Biol.</source> <volume>32</volume>, <fpage>860</fpage>&#x2013;<lpage>871</lpage>. doi: <pub-id pub-id-type="doi">10.1111/cobi.13061</pub-id>, PMID: <pub-id pub-id-type="pmid">29210104</pub-id></citation></ref>
<ref id="ref27"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brooks</surname> <given-names>S. J.</given-names></name> <name><surname>Fitch</surname> <given-names>B.</given-names></name> <name><surname>Davy-Bowker</surname> <given-names>J.</given-names></name> <name><surname>Codesal</surname> <given-names>S. A.</given-names></name></person-group> (<year>2019</year>). <article-title>Anglers&#x2019; riverfly monitoring initiative (ARMI): a UK-wide citizen science project for water quality assessment</article-title>. <source>Freshwater Sci.</source> <volume>38</volume>, <fpage>270</fpage>&#x2013;<lpage>280</lpage>. doi: <pub-id pub-id-type="doi">10.1086/703397</pub-id></citation></ref>
<ref id="ref28"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Budambula</surname> <given-names>N. L. M.</given-names></name> <name><surname>Mwachiro</surname> <given-names>E. C.</given-names></name></person-group> (<year>2006</year>). <article-title>Metal status of Nairobi River waters and their bioaccumulation in <italic>Labeo cylindricus</italic></article-title>. <source>Water Air Soil Pollut.</source> <volume>169</volume>, <fpage>275</fpage>&#x2013;<lpage>291</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s11270-006-2294-x</pub-id></citation></ref>
<ref id="ref29"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Byamukama</surname> <given-names>D.</given-names></name> <name><surname>Kansiime</surname> <given-names>F.</given-names></name> <name><surname>Mach</surname> <given-names>R. L.</given-names></name> <name><surname>Farnleitner</surname> <given-names>A. H.</given-names></name></person-group> (<year>2000</year>). <article-title>Determination of <italic>Escherichia coli</italic> contamination with chromocult coliform agar showed a high level of discrimination efficiency for differing fecal pollution levels in tropical waters of Kampala, Uganda</article-title>. <source>Appl. Environ. Microbiol.</source> <volume>66</volume>, <fpage>864</fpage>&#x2013;<lpage>868</lpage>. doi: <pub-id pub-id-type="doi">10.1128/AEM.66.2.864-868.2000</pub-id>, PMID: <pub-id pub-id-type="pmid">10653767</pub-id></citation></ref>
<ref id="ref30"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cabral</surname> <given-names>A. F.</given-names></name> <name><surname>Buosi</surname> <given-names>P. R. B.</given-names></name> <name><surname>Seg&#x00F3;via</surname> <given-names>B. T.</given-names></name> <name><surname>Velho</surname> <given-names>L. F. M.</given-names></name> <name><surname>Bini</surname> <given-names>L. M.</given-names></name></person-group> (<year>2017</year>). <article-title>Taxonomic sufficiency in detecting hydrological changes and reproducing ordination patterns: a test using planktonic ciliates</article-title>. <source>Ecol. Indic.</source> <volume>82</volume>, <fpage>227</fpage>&#x2013;<lpage>232</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2017.07.008</pub-id></citation></ref>
<ref id="ref31"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Carew</surname> <given-names>M. E.</given-names></name> <name><surname>Miller</surname> <given-names>A. D.</given-names></name> <name><surname>Hoffmann</surname> <given-names>A. A.</given-names></name></person-group> (<year>2011</year>). <article-title>Phylogenetic signals and ecotoxicological responses: potential implications for aquatic biomonitoring</article-title>. <source>Ecotoxicology</source> <volume>20</volume>, <fpage>595</fpage>&#x2013;<lpage>606</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10646-011-0615-3</pub-id>, PMID: <pub-id pub-id-type="pmid">21365200</pub-id></citation></ref>
<ref id="ref32"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Carter</surname> <given-names>J. L.</given-names></name> <name><surname>Resh</surname> <given-names>V. H.</given-names></name> <name><surname>Hannaford</surname> <given-names>M. J.</given-names></name></person-group> (<year>2017</year>). &#x201C;<article-title>Macroinvertebrates as biotic indicators of environmental quality</article-title>&#x201D; in <source>Methods in stream ecology</source>. (<publisher-name>Elsevier: Amsterdam, The Netherland Academic Press</publisher-name>), <fpage>293</fpage>&#x2013;<lpage>318</lpage>. doi: <pub-id pub-id-type="doi">10.1016/b978-0-12-813047-6.00016-4</pub-id></citation></ref>
<ref id="ref33"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Celekli</surname> <given-names>A.</given-names></name> <name><surname>Lekesiz</surname> <given-names>H.</given-names></name> <name><surname>Yavuzatmaca</surname> <given-names>M.</given-names></name></person-group> (<year>2021</year>). <article-title>Bioassessment of water quality of surface waters using diatom metrics</article-title>. <source>Turk. J. Bot.</source> <volume>45</volume>, <fpage>379</fpage>&#x2013;<lpage>396</lpage>. doi: <pub-id pub-id-type="doi">10.3906/bot-2101-16</pub-id></citation></ref>
<ref id="ref34"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Celekli</surname> <given-names>A.</given-names></name> <name><surname>Toudjani</surname> <given-names>A. A.</given-names></name> <name><surname>Gumu&#x015F;</surname> <given-names>E. Y.</given-names></name> <name><surname>Kayhan</surname> <given-names>S.</given-names></name> <name><surname>Lekesiz</surname> <given-names>H. O.</given-names></name></person-group> (<year>2019</year>). <article-title>Determination of trophic weight and indicator values of diatoms in Turkish running waters for water quality assessment</article-title>. <source>Turk. J. Bot.</source> <volume>43</volume>, <fpage>90</fpage>&#x2013;<lpage>101</lpage>. doi: <pub-id pub-id-type="doi">10.3906/bot-1704-40</pub-id></citation></ref>
<ref id="ref35"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chadwick</surname> <given-names>M. A.</given-names></name> <name><surname>Thiele</surname> <given-names>J. E.</given-names></name> <name><surname>Huryn</surname> <given-names>A. D.</given-names></name> <name><surname>Benke</surname> <given-names>A. C.</given-names></name> <name><surname>Dobberfuhl</surname> <given-names>D. R.</given-names></name></person-group> (<year>2012</year>). <article-title>Effects of urbanization on macroinvertebrates in tributaries of the St. Johns River, Florida, USA</article-title>. <source>Urban Ecosyst.</source> <volume>15</volume>, <fpage>347</fpage>&#x2013;<lpage>365</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s11252-011-0217-0</pub-id></citation></ref>
<ref id="ref36"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chamia</surname> <given-names>L. K.</given-names></name> <name><surname>Kutuny</surname> <given-names>G. K.</given-names></name></person-group> (<year>2022</year>). <article-title>Assessment of benthic macroinvertebrates as bioindicators of water quality in river Naka, Chuka, Tharaka-Nithi, Kenya</article-title>. <source>J. Environ. Sustain. Advanc. Res.</source> <volume>8</volume>, <fpage>1</fpage>&#x2013;<lpage>9</lpage>.</citation></ref>
<ref id="ref37"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chandler</surname> <given-names>M.</given-names></name> <name><surname>See</surname> <given-names>L.</given-names></name> <name><surname>Copas</surname> <given-names>K.</given-names></name> <name><surname>Bonde</surname> <given-names>A. M.</given-names></name> <name><surname>Lopez</surname> <given-names>B. C.</given-names></name> <name><surname>Danielsen</surname> <given-names>F.</given-names></name></person-group> (<year>2017</year>). <article-title>Contribution of citizen science towards international biodiversity monitoring</article-title>. <source>Biol. Conserv.</source> <volume>213</volume>, <fpage>280</fpage>&#x2013;<lpage>294</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.biocon.2016.09.004</pub-id></citation></ref>
<ref id="ref38"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Charles</surname> <given-names>D. F.</given-names></name> <name><surname>Kelly</surname> <given-names>M. G.</given-names></name> <name><surname>Stevenson</surname> <given-names>R. J.</given-names></name> <name><surname>Poikane</surname> <given-names>S.</given-names></name> <name><surname>Theroux</surname> <given-names>S.</given-names></name></person-group> (<year>2021</year>). <article-title>Benthic algae assessments in the EU and the US: striving for consistency in the face of great ecological diversity</article-title>. <source>Ecol. Indic.</source> <volume>121</volume>:<fpage>107082</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2020.107082</pub-id></citation></ref>
<ref id="ref40"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chen</surname> <given-names>Z.</given-names></name> <name><surname>Zhong</surname> <given-names>X.</given-names></name> <name><surname>Zheng</surname> <given-names>M.</given-names></name> <name><surname>Liu</surname> <given-names>W. S.</given-names></name> <name><surname>Fei</surname> <given-names>Y.</given-names></name> <name><surname>Ding</surname> <given-names>K.</given-names></name> <etal/></person-group>. (<year>2022</year>). <article-title>Indicator species drive the key ecological functions of microbiota in a river impacted by acid mine drainage generated by rare earth elements mining in South China</article-title>. <source>Environ. Microbiol.</source> <volume>24</volume>, <fpage>919</fpage>&#x2013;<lpage>937</lpage>. doi: <pub-id pub-id-type="doi">10.1111/1462-2920.15501</pub-id>, PMID: <pub-id pub-id-type="pmid">33848048</pub-id></citation></ref>
<ref id="ref41"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chikodzi</surname> <given-names>D.</given-names></name> <name><surname>Mabhegedhe</surname> <given-names>M.</given-names></name> <name><surname>Tunha</surname> <given-names>T. K.</given-names></name></person-group> (<year>2017</year>). <article-title>Biomonitoring of Mucheke and Shagashe Rivers in Masvingo, Zimbabwe using macro-invertebrates as indicators of water quality</article-title>. <source>J. Geosci. Environ. Protect.</source> <volume>5</volume>, <fpage>221</fpage>&#x2013;<lpage>237</lpage>. doi: <pub-id pub-id-type="doi">10.4236/gep.2017.59016</pub-id></citation></ref>
<ref id="ref42"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Chutter</surname> <given-names>F. M.</given-names></name></person-group> (<year>1998</year>). Research on the rapid biological assessment of water quality impacts in streams and Rivers. WRC Report No. 422/1/98. Water Research Commission, Pretoria, South Africa</citation></ref>
<ref id="ref43"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Conrad</surname> <given-names>C. C.</given-names></name> <name><surname>Hilchey</surname> <given-names>K. G.</given-names></name></person-group> (<year>2011</year>). <article-title>A review of citizen science and community-based environmental monitoring: issues and opportunities</article-title>. <source>Environ. Monit. Assess.</source> <volume>176</volume>, <fpage>273</fpage>&#x2013;<lpage>291</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10661-010-1582-5</pub-id>, PMID: <pub-id pub-id-type="pmid">20640506</pub-id></citation></ref>
<ref id="ref44"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cordier</surname> <given-names>T.</given-names></name> <name><surname>Alonso-Saez</surname> <given-names>L.</given-names></name> <name><surname>Apoth&#x00E9;loz-Perret-Gentil</surname> <given-names>L.</given-names></name> <name><surname>Aylagas</surname> <given-names>E.</given-names></name> <name><surname>Bohan</surname> <given-names>D. A.</given-names></name> <name><surname>Bouchez</surname> <given-names>A.</given-names></name> <etal/></person-group>. (<year>2021</year>). <article-title>Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap</article-title>. <source>Mol. Ecol.</source> <volume>30</volume>, <fpage>2937</fpage>&#x2013;<lpage>2958</lpage>. doi: <pub-id pub-id-type="doi">10.1111/mec.15472</pub-id>, PMID: <pub-id pub-id-type="pmid">32416615</pub-id></citation></ref>
<ref id="ref7001"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Crocker</surname> <given-names>E.</given-names></name> <name><surname>Condon</surname> <given-names>B.</given-names></name> <name><surname>Almsaeed</surname> <given-names>A.</given-names></name> <name><surname>Jarret</surname> <given-names>B.</given-names></name> <name><surname>Nelson</surname> <given-names>C. D.</given-names></name> <name><surname>Abbott</surname> <given-names>A. G.</given-names></name> <etal/></person-group>. (<year>2019</year>). <article-title>TreeSnap: A citizen science app connecting tree enthusiasts and forest scientists</article-title>. <source>Plants People Planet</source> <volume>2</volume>, <fpage>47</fpage>&#x2013;<lpage>52</lpage>. doi: <pub-id pub-id-type="doi">10.1002/ppp3.41</pub-id></citation></ref>
<ref id="ref45"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dahm</surname> <given-names>V.</given-names></name> <name><surname>Hering</surname> <given-names>D.</given-names></name> <name><surname>Nemitz</surname> <given-names>D.</given-names></name> <name><surname>Graf</surname> <given-names>W.</given-names></name> <name><surname>Schmidt-Kloiber</surname> <given-names>A.</given-names></name> <name><surname>Leitner</surname> <given-names>P.</given-names></name> <etal/></person-group>. (<year>2013</year>). <article-title>Effects of physico-chemistry, land use and hydromorphology on three riverine organism groups: a comparative analysis with monitoring data from Germany and Austria</article-title>. <source>Hydrobiologia</source> <volume>704</volume>, <fpage>389</fpage>&#x2013;<lpage>415</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10750-012-1431-3</pub-id></citation></ref>
<ref id="ref46"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dallas</surname> <given-names>H. F.</given-names></name></person-group> (<year>2021</year>). <article-title>Rapid bioassessment protocols using aquatic macroinvertebrates in Africa&#x2013;considerations for regional adaptation of existing biotic indices</article-title>. <source>Front. Water</source> <volume>3</volume>:<fpage>628227</fpage>. doi: <pub-id pub-id-type="doi">10.3389/frwa.2021.628227</pub-id></citation></ref>
<ref id="ref47"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dallas</surname> <given-names>H. F.</given-names></name> <name><surname>Lowe</surname> <given-names>S.</given-names></name> <name><surname>Kennedy</surname> <given-names>M. P.</given-names></name> <name><surname>Saili</surname> <given-names>K.</given-names></name> <name><surname>Murphy</surname> <given-names>K. J.</given-names></name></person-group> (<year>2018</year>). <article-title>Zambian invertebrate scoring system (ZISS): a macroinvertebrate-based biotic index for rapid bioassessment of southern tropical African river systems</article-title>. <source>Afr. J. Aquat. Sci.</source> <volume>43</volume>, <fpage>325</fpage>&#x2013;<lpage>344</lpage>. doi: <pub-id pub-id-type="doi">10.2989/16085914.2018.1517081</pub-id></citation></ref>
<ref id="ref48"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dallas</surname> <given-names>H.</given-names></name> <name><surname>Mosepele</surname> <given-names>B.</given-names></name></person-group> (<year>2020</year>). <article-title>Spatial variability of aquatic macroinvertebrate assemblages in the Okavango Delta, Botswana: considerations for developing a rapid bioassessment tool</article-title>. <source>Afr. J. Aquat. Sci.</source> <volume>45</volume>, <fpage>350</fpage>&#x2013;<lpage>363</lpage>. doi: <pub-id pub-id-type="doi">10.2989/16085914.2019.1704215</pub-id></citation></ref>
<ref id="ref49"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dalu</surname> <given-names>T.</given-names></name> <name><surname>Froneman</surname> <given-names>P. W.</given-names></name> <name><surname>Bere</surname> <given-names>T.</given-names></name></person-group> (<year>2016</year>). <article-title>Assessment of water quality based on diatom indices in a small temperate river system, Kowie River, South Africa</article-title>. <source>Water SA</source> <volume>42</volume>, <fpage>183</fpage>&#x2013;<lpage>193</lpage>. doi: <pub-id pub-id-type="doi">10.4314/wsa.v42i2.02</pub-id></citation></ref>
<ref id="ref50"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Debastiani</surname> <given-names>C.</given-names></name> <name><surname>Meira</surname> <given-names>B. R.</given-names></name> <name><surname>Lansac-T&#x00F4;ha</surname> <given-names>F. M.</given-names></name> <name><surname>Velho</surname> <given-names>L. F. M.</given-names></name> <name><surname>Lansac-T&#x00F4;ha</surname> <given-names>F. A.</given-names></name></person-group> (<year>2016</year>). <article-title>Protozoa ciliates community structure in urban streams and their environmental use as indicators</article-title>. <source>Braz. J. Biol.</source> <volume>76</volume>, <fpage>1043</fpage>&#x2013;<lpage>1053</lpage>. doi: <pub-id pub-id-type="doi">10.1590/1519-6984.08615</pub-id>, PMID: <pub-id pub-id-type="pmid">27191462</pub-id></citation></ref>
<ref id="ref51"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Debels</surname> <given-names>P.</given-names></name> <name><surname>Figueroa</surname> <given-names>R.</given-names></name> <name><surname>Urrutia</surname> <given-names>R.</given-names></name> <name><surname>Barra</surname> <given-names>R.</given-names></name> <name><surname>Niell</surname> <given-names>X.</given-names></name></person-group> (<year>2005</year>). <article-title>Evaluation of water quality in the Chill&#x00E1;n River (Central Chile) using physicochemical parameters and a modified water quality index</article-title>. <source>Environ. Monit. Assess.</source> <volume>110</volume>, <fpage>301</fpage>&#x2013;<lpage>322</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10661-005-8064-1</pub-id>, PMID: <pub-id pub-id-type="pmid">16308794</pub-id></citation></ref>
<ref id="ref52"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Debenest</surname> <given-names>T.</given-names></name> <name><surname>Silvestrea</surname> <given-names>J.</given-names></name> <name><surname>Pinelli</surname> <given-names>E.</given-names></name></person-group> (<year>2013</year>). <article-title>Diatoms in ecotoxicology</article-title>. <source>Encycl. Aquatic Ecotoxicol.</source>, 1, <fpage>295</fpage>&#x2013;<lpage>304</lpage>. doi: <pub-id pub-id-type="doi">10.1007/978-94-007-5704-2_29</pub-id></citation></ref>
<ref id="ref53"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dell'Uomo</surname> <given-names>A.</given-names></name> <name><surname>Torrisi</surname> <given-names>M.</given-names></name></person-group> (<year>2011</year>). <article-title>The eutrophication/pollution index-diatom based (EPI-D) and three new related indices for monitoring rivers: the case study of the river Potenza (the marches, Italy)</article-title>. <source>Plant Biosyst.</source> <volume>145</volume>, <fpage>331</fpage>&#x2013;<lpage>341</lpage>. doi: <pub-id pub-id-type="doi">10.1080/11263504.2011.569347</pub-id></citation></ref>
<ref id="ref54"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dias</surname> <given-names>R. J. P.</given-names></name> <name><surname>de Souza</surname> <given-names>P. M.</given-names></name> <name><surname>Rossi</surname> <given-names>M. F.</given-names></name> <name><surname>Wieloch</surname> <given-names>A. H.</given-names></name> <name><surname>da Silva-Neto</surname> <given-names>I. D.</given-names></name> <name><surname>D&#x2019;Agosto</surname> <given-names>M.</given-names></name></person-group> (<year>2021</year>). <article-title>Ciliates as bioindicators of water quality: a case study in the neotropical region and evidence of phylogenetic signals (18S-rDNA)</article-title>. <source>Environ. Pollut.</source> <volume>268</volume>:<fpage>115760</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.envpol.2020.115760</pub-id>, PMID: <pub-id pub-id-type="pmid">33162216</pub-id></citation></ref>
<ref id="ref55"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dickens</surname> <given-names>C. W.</given-names></name> <name><surname>Graham</surname> <given-names>P. M.</given-names></name></person-group> (<year>2002</year>). <article-title>The south African scoring system (SASS) version 5 rapid bioassessment method for rivers</article-title>. <source>Afr. J. Aquat. Sci.</source> <volume>27</volume>, <fpage>1</fpage>&#x2013;<lpage>10</lpage>. doi: <pub-id pub-id-type="doi">10.2989/16085914.2002.9626569</pub-id></citation></ref>
<ref id="ref56"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dol&#x00E9;dec</surname> <given-names>S.</given-names></name> <name><surname>Statzner</surname> <given-names>B.</given-names></name></person-group> (<year>2010</year>). <article-title>Responses of freshwater biota to human disturbances: contribution of J-NABS to developments in ecological integrity assessments</article-title>. <source>J. N. Am. Benthol. Soc.</source> <volume>29</volume>, <fpage>286</fpage>&#x2013;<lpage>311</lpage>. doi: <pub-id pub-id-type="doi">10.1899/08-090.1</pub-id></citation></ref>
<ref id="ref57"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Duarte</surname> <given-names>S.</given-names></name> <name><surname>Fernandes</surname> <given-names>I.</given-names></name> <name><surname>Nogueira</surname> <given-names>M. J.</given-names></name> <name><surname>C&#x00E1;ssio</surname> <given-names>F.</given-names></name> <name><surname>Pascoal</surname> <given-names>C.</given-names></name></person-group> (<year>2013</year>). <article-title>Temperature alters interspecific relationships among aquatic fungi</article-title>. <source>Fungal Ecol.</source> <volume>6</volume>, <fpage>187</fpage>&#x2013;<lpage>191</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.funeco.2013.02.001</pub-id></citation></ref>
<ref id="ref58"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dusabe</surname> <given-names>M. C.</given-names></name> <name><surname>Wronski</surname> <given-names>T.</given-names></name> <name><surname>Gomes-Silva</surname> <given-names>G.</given-names></name> <name><surname>Plath</surname> <given-names>M.</given-names></name> <name><surname>Albrecht</surname> <given-names>C.</given-names></name> <name><surname>Apio</surname> <given-names>A.</given-names></name></person-group> (<year>2019</year>). <article-title>Biological water quality assessment in the degraded Mutara rangelands, northeastern Rwanda</article-title>. <source>Environ. Monit. Assess.</source> <volume>191</volume>, <fpage>139</fpage>&#x2013;<lpage>113</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10661-019-7226-5</pub-id>, PMID: <pub-id pub-id-type="pmid">30734125</pub-id></citation></ref>
<ref id="ref59"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dwyer</surname> <given-names>G. K.</given-names></name> <name><surname>Stoffels</surname> <given-names>R. J.</given-names></name> <name><surname>Rees</surname> <given-names>G. N.</given-names></name> <name><surname>Shackleton</surname> <given-names>M. E.</given-names></name> <name><surname>Silvester</surname> <given-names>E.</given-names></name></person-group> (<year>2018</year>). <article-title>A predicted change in the amino acid landscapes available to freshwater carnivores</article-title>. <source>Freshwater Sci.</source> <volume>37</volume>, <fpage>108</fpage>&#x2013;<lpage>120</lpage>. doi: <pub-id pub-id-type="doi">10.1086/696128</pub-id></citation></ref>
<ref id="ref60"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Edegbene</surname> <given-names>A. O.</given-names></name> <name><surname>Akamagwuna</surname> <given-names>F. C.</given-names></name> <name><surname>Odume</surname> <given-names>O. N.</given-names></name> <name><surname>Arimoro</surname> <given-names>F. O.</given-names></name> <name><surname>Edegbene Ovie</surname> <given-names>T. T.</given-names></name> <name><surname>Akumabor</surname> <given-names>E. C.</given-names></name> <etal/></person-group>. (<year>2022</year>). <article-title>A macroinvertebrate-based multimetric index for assessing ecological condition of forested stream sites draining Nigerian urbanizing landscapes</article-title>. <source>Sustain. For.</source> <volume>14</volume>:<fpage>11289</fpage>. doi: <pub-id pub-id-type="doi">10.3390/su141811289</pub-id></citation></ref>
<ref id="ref61"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Edegbene</surname> <given-names>A. O.</given-names></name> <name><surname>Arimoro</surname> <given-names>F. O.</given-names></name> <name><surname>Odume</surname> <given-names>O. N.</given-names></name></person-group> (<year>2019</year>). <article-title>Developing and applying a macroinvertebrate-based multimetric index for urban rivers in the Niger Delta, Nigeria</article-title>. <source>Ecol. Evol.</source> <volume>9</volume>, <fpage>12869</fpage>&#x2013;<lpage>12885</lpage>. doi: <pub-id pub-id-type="doi">10.1002/ece3.5769</pub-id>, PMID: <pub-id pub-id-type="pmid">31788221</pub-id></citation></ref>
<ref id="ref62"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Elias</surname> <given-names>J. D.</given-names></name> <name><surname>Ijumba</surname> <given-names>J. N.</given-names></name> <name><surname>Mgaya</surname> <given-names>Y. D.</given-names></name> <name><surname>Mamboya</surname> <given-names>F. A.</given-names></name></person-group> (<year>2014</year>). <article-title>Study on freshwater macroinvertebrates of some Tanzanian rivers as a basis for developing biomonitoring index for assessing pollution in tropical African regions</article-title>. <source>J. Ecosyst.</source> <volume>2014</volume>, <fpage>1</fpage>&#x2013;<lpage>8</lpage>. doi: <pub-id pub-id-type="doi">10.1155/2014/985389</pub-id></citation></ref>
<ref id="ref63"><citation citation-type="book"><person-group person-group-type="author"><collab id="coll2">EMCA</collab></person-group> (<year>1999</year>). <source>The environmental management and coordination act no.8 of 1999 Kenya gazette supplement</source>. <publisher-loc>Nairobi, Kenya</publisher-loc>: <publisher-name>Government Printers</publisher-name>.</citation></ref>
<ref id="ref64"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Engel</surname> <given-names>S. R.</given-names></name></person-group> (<year>2000</year>). The effectiveness of using volunteers for biological monitoring of streams. Master&#x2019;s thesis. Blacksburg: Virginia, USA, Virginia Tech.</citation></ref>
<ref id="ref65"><citation citation-type="other"><person-group person-group-type="author"><collab id="coll3">European Union</collab></person-group> (<year>2000</year>). Directive 2000/60/EC of the European Parliament and of the Council for Community Action in the Field of Water Policy. Available at: <ext-link xlink:href="https://eur-lex.europa.eu/legal-content/en/ALL/?uri=CELEX%3A32000L0060" ext-link-type="uri">https://eur-lex.europa.eu/legal-content/en/ALL/?uri=CELEX%3A32000L0060</ext-link> (Accessed October 18, 2023)</citation></ref>
<ref id="ref66"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Feld</surname> <given-names>C. K.</given-names></name> <name><surname>Birk</surname> <given-names>S.</given-names></name> <name><surname>Bradley</surname> <given-names>D. C.</given-names></name> <name><surname>Hering</surname> <given-names>D.</given-names></name> <name><surname>Kail</surname> <given-names>J.</given-names></name> <name><surname>Marzin</surname> <given-names>A.</given-names></name> <etal/></person-group>. (<year>2011</year>). <article-title>From natural to degraded rivers and back again: a test of restoration ecology theory and practice</article-title>. <source>Adv. Ecol. Res.</source> <volume>44</volume>, <fpage>119</fpage>&#x2013;<lpage>209</lpage>. doi: <pub-id pub-id-type="doi">10.1016/B978-0-12-374794-5.00003-1</pub-id></citation></ref>
<ref id="ref67"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ferreira</surname> <given-names>V.</given-names></name> <name><surname>Elosegi</surname> <given-names>A.</given-names></name> <name><surname>Tiegs</surname> <given-names>S. D.</given-names></name> <name><surname>von Schiller</surname> <given-names>D.</given-names></name> <name><surname>Young</surname> <given-names>R.</given-names></name></person-group> (<year>2020</year>). <article-title>Organic matter decomposition and ecosystem metabolism as tools to assess the functional integrity of streams and rivers&#x2013;a systematic review</article-title>. <source>Water (Switzerland)</source> <volume>12</volume>:<fpage>3523</fpage>. doi: <pub-id pub-id-type="doi">10.3390/w12123523</pub-id></citation></ref>
<ref id="ref68"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fuhrimann</surname> <given-names>S.</given-names></name> <name><surname>Stalder</surname> <given-names>M.</given-names></name> <name><surname>Winkler</surname> <given-names>M. S.</given-names></name> <name><surname>Niwagaba</surname> <given-names>C. B.</given-names></name> <name><surname>Babu</surname> <given-names>M.</given-names></name> <name><surname>Masaba</surname> <given-names>G.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Microbial and chemical contamination of water, sediment and soil in the Nakivubo wetland area in Kampala, Uganda</article-title>. <source>Environ. Monit. Assess.</source> <volume>187</volume>, <fpage>475</fpage>&#x2013;<lpage>415</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10661-015-4689-x</pub-id>, PMID: <pub-id pub-id-type="pmid">26122126</pub-id></citation></ref>
<ref id="ref69"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gabriel</surname> <given-names>O. A.</given-names></name> <name><surname>Azubuike</surname> <given-names>E. L.</given-names></name> <name><surname>Paul</surname> <given-names>A. O.</given-names></name> <name><surname>Sayfullah</surname> <given-names>O. K.</given-names></name> <name><surname>Tochukwu</surname> <given-names>N. P.</given-names></name></person-group> (<year>2017</year>). <article-title>Abundance and distribution of macro-benthic invertebrates as bio-indicators of water quality in Ikwo River, Ishiagu, south-eastern Nigeria</article-title>. <source>Int. J. Fauna Biol. Stud.</source> <volume>4</volume>, <fpage>43</fpage>&#x2013;<lpage>46</lpage>.</citation></ref>
<ref id="ref70"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Georgiou</surname> <given-names>P.</given-names></name> <name><surname>Mattas</surname> <given-names>C.</given-names></name> <name><surname>Mattas</surname> <given-names>K.</given-names></name> <name><surname>Lazaridou</surname> <given-names>D.</given-names></name> <name><surname>Nastis</surname> <given-names>S.</given-names></name></person-group> (<year>2024</year>). &#x201C;<article-title>Sustainable water resources management based on the DPSIR framework in east and west African countries</article-title>&#x201D; in <source>Value chain dynamics in a biodiverse environment: advances in biodiversity, sustainability, and agri-food supply chain development</source>. Mattas, K, Baourakis, G, Zopounidis, C, and Staboulis C editors. (<publisher-loc>Springer Nature Switzerland</publisher-loc>: <publisher-name>Cham</publisher-name>), <fpage>77</fpage>&#x2013;<lpage>106</lpage>.</citation></ref>
<ref id="ref71"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Gerber</surname> <given-names>A.</given-names></name> <name><surname>Gabriel</surname> <given-names>M. J. M.</given-names></name></person-group> (<year>2002</year>). <source>Aquatic invertebrates of south African rivers</source>: <publisher-name>South Africa, Department of Water Affairs and Forestry</publisher-name>.</citation></ref>
<ref id="ref9001"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gichana</surname> <given-names>Z.</given-names></name> <name><surname>Njiru</surname> <given-names>M.</given-names></name> <name><surname>Raburu</surname> <given-names>P. O.</given-names></name> <name><surname>Masese</surname> <given-names>F. O.</given-names></name></person-group> (<year>2015</year>). <article-title>Effects of human activities on benthic macroinvertebrate community composition and water quality in the upper catchment of the M ara R iver B asin, K enya</article-title>. <source>Lakes &#x0026; Reservoirs: Research &#x0026; Management</source> <volume>20</volume>, <fpage>128</fpage>&#x2013;<lpage>137</lpage>. doi: <pub-id pub-id-type="doi">10.1111/lre.12094</pub-id></citation></ref>
<ref id="ref72"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gichana</surname> <given-names>Z. M.</given-names></name> <name><surname>Njiru</surname> <given-names>M.</given-names></name> <name><surname>Raburu</surname> <given-names>P. O.</given-names></name> <name><surname>Masese</surname> <given-names>F. O.</given-names></name></person-group> (<year>2014</year>). <article-title>Effects of human activities on microbial water quality in Nyangores stream, Mara River basin</article-title>. <source>Int. J. Sci. Technol. Res.</source> <volume>3</volume>, <fpage>153</fpage>&#x2013;<lpage>157</lpage>.</citation></ref>
<ref id="ref2020"><citation citation-type="book"><person-group person-group-type="author"><collab id="coll121">GoU (Government of Uganda)</collab></person-group> (<year>1999</year>). <source>National Water Policy, Kampala: Ministry of Water and Environment</source>. <publisher-loc>Kampala, Uganda</publisher-loc>: <publisher-name>Government of Uganda</publisher-name>.</citation></ref>
<ref id="ref73"><citation citation-type="book"><person-group person-group-type="author"><collab id="coll4">Government of Kenya</collab></person-group> (<year>2002</year>). <source>The water act</source>. <publisher-loc>Nairobi, Kenya</publisher-loc>: <publisher-name>Government Printer</publisher-name>.</citation></ref>
<ref id="ref74"><citation citation-type="book"><person-group person-group-type="author"><collab id="coll5">Government of Kenya</collab></person-group> (<year>2006</year>). <source>Environmental management and coordination (water quality) regulations, 2006, Kenya gazette supplement no 68</source>. <publisher-loc>Nairobi, Kenya</publisher-loc>: <publisher-name>Government Printer</publisher-name>.</citation></ref>
<ref id="ref75"><citation citation-type="book"><person-group person-group-type="author"><collab id="coll6">Government of Tanzania</collab></person-group> (<year>2009</year>). <source>The water resources management act</source>. <publisher-loc>Dodoma, Tanzania</publisher-loc>: <publisher-name>Government Printer</publisher-name>.</citation></ref>
<ref id="ref76"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gouissi</surname> <given-names>F. M.</given-names></name> <name><surname>Samon</surname> <given-names>O.</given-names></name> <name><surname>Abahi</surname> <given-names>K. S.</given-names></name> <name><surname>Adje</surname> <given-names>D. D.</given-names></name> <name><surname>Tchaou</surname> <given-names>C. M.</given-names></name> <name><surname>Piami</surname> <given-names>Z. O.</given-names></name> <etal/></person-group>. (<year>2019</year>). <article-title>Relationship between macroinvertebrates and physico-chemical parameters to access water quality of the Affon River in B&#x00E9;nin</article-title>. <source>Adv. Entomol.</source> <volume>7</volume>, <fpage>92</fpage>&#x2013;<lpage>104</lpage>. doi: <pub-id pub-id-type="doi">10.4236/ae.2019.74008</pub-id></citation></ref>
<ref id="ref8001"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Graham</surname> <given-names>P. M.</given-names></name> <name><surname>Dickens</surname> <given-names>C. W.</given-names></name> <name><surname>Taylor</surname> <given-names>R. J.</given-names></name></person-group> (<year>2004</year>). <article-title>miniSASS&#x2014;A novel technique for community participation in river health monitoring and management</article-title>. <source>African Journal of Aquatic Science</source> <volume>29</volume>, <fpage>25</fpage>&#x2013;<lpage>35</lpage>. doi: <pub-id pub-id-type="doi">10.2989/16085910409503789</pub-id></citation></ref>
<ref id="ref77"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gritzalis</surname> <given-names>K. C.</given-names></name></person-group> (<year>2006</year>). <article-title>Biological monitoring of Mediterranean rivers with special reference to Greece</article-title>. <source>Biol. Monitor. Rivers</source>, 1, <fpage>295</fpage>&#x2013;<lpage>325</lpage>. doi: <pub-id pub-id-type="doi">10.1002/0470863781.ch16</pub-id></citation></ref>
<ref id="ref1010"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Guiry</surname> <given-names>M. D.</given-names></name> <name><surname>Guiry</surname> <given-names>G. M.</given-names></name></person-group> (<year>2015</year>). <source>Algae Base Version 4.2</source>. <publisher-loc>Galway</publisher-loc>: <publisher-name>World-Wide Electronic Publication, National University of Ireland</publisher-name> Available at: <ext-link xlink:href="http://www.algaebase.org" ext-link-type="uri">http://www.algaebase.org</ext-link>.</citation></ref>
<ref id="ref80"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gulin</surname> <given-names>V.</given-names></name> <name><surname>Vlai&#x010D;evi&#x0107;</surname> <given-names>B.</given-names></name> <name><surname>Serti&#x0107; Peri&#x0107;</surname> <given-names>M.</given-names></name> <name><surname>Rebrina</surname> <given-names>F.</given-names></name> <name><surname>Matoni&#x010D;kin Kep&#x010D;ija</surname> <given-names>R.</given-names></name></person-group> (<year>2022</year>). <article-title>Taxonomic and functional metrics of ciliates and amoeboid protists in response to stream revitalization</article-title>. <source>Front. Microbiol.</source> <volume>13</volume>:<fpage>842395</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fmicb.2022.842395</pub-id>, PMID: <pub-id pub-id-type="pmid">35432285</pub-id></citation></ref>
<ref id="ref81"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gurney</surname> <given-names>G. G.</given-names></name> <name><surname>Cinner</surname> <given-names>J. E.</given-names></name> <name><surname>Sartin</surname> <given-names>J.</given-names></name> <name><surname>Pressey</surname> <given-names>R. L.</given-names></name> <name><surname>Ban</surname> <given-names>N. C.</given-names></name> <name><surname>Marshall</surname> <given-names>N. A.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Participation in devolved commons management: multiscale socioeconomic factors related to individuals&#x2019; participation in community-based management of marine protected areas in Indonesia</article-title>. <source>Environ Sci Policy</source> <volume>61</volume>, <fpage>212</fpage>&#x2013;<lpage>220</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.envsci.2016.04.015</pub-id></citation></ref>
<ref id="ref82"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gustavsson</surname> <given-names>B. M.</given-names></name> <name><surname>Magner</surname> <given-names>J.</given-names></name> <name><surname>Almroth</surname> <given-names>B. C.</given-names></name> <name><surname>Eriksson</surname> <given-names>M. K.</given-names></name> <name><surname>Sturve</surname> <given-names>J.</given-names></name> <name><surname>Backhaus</surname> <given-names>T.</given-names></name></person-group> (<year>2017</year>). <article-title>Chemical monitoring of Swedish coastal waters indicates common exceedances of environmental thresholds, both for individual substances as well as their mixtures</article-title>. <source>Mar. Pollut. Bull.</source> <volume>122</volume>, <fpage>409</fpage>&#x2013;<lpage>419</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.marpolbul.2017.06.082</pub-id>, PMID: <pub-id pub-id-type="pmid">28693810</pub-id></citation></ref>
<ref id="ref83"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Haklay</surname> <given-names>M.</given-names></name> <name><surname>D&#x00F6;rler</surname> <given-names>D.</given-names></name> <name><surname>Heigl</surname> <given-names>F.</given-names></name> <name><surname>Manzoni</surname> <given-names>M.</given-names></name> <name><surname>Hecker</surname> <given-names>S.</given-names></name> <name><surname>Vohland</surname> <given-names>K.</given-names></name></person-group> (<year>2021</year>). <article-title>What is citizen science? The challenges of definition</article-title>. <source>Sci. Citizen Sci.</source>, <fpage>13</fpage>&#x2013;<lpage>33</lpage>. doi: <pub-id pub-id-type="doi">10.1007/978-3-030-58278-4_2</pub-id></citation></ref>
<ref id="ref84"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Harding</surname> <given-names>W. R.</given-names></name> <name><surname>Taylor</surname> <given-names>J. C.</given-names></name></person-group> (<year>2011</year>). The south African diatom index (SADI): A preliminary index for indicating water quality in rivers and streams in southern Africa: Report to the Water Research Commission. Report no. 1701/1/11.</citation></ref>
<ref id="ref85"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hecker</surname> <given-names>S.</given-names></name> <name><surname>Wicke</surname> <given-names>N.</given-names></name> <name><surname>Haklay</surname> <given-names>M.</given-names></name> <name><surname>Bonn</surname> <given-names>A.</given-names></name></person-group> (<year>2019</year>). <article-title>How does policy conceptualize citizen science? A qualitative content analysis of international policy documents</article-title>. <source>Citizen Science: Theory and Practice</source> <volume>4</volume>, <fpage>1</fpage>&#x2013;<lpage>16</lpage>. doi: <pub-id pub-id-type="doi">10.5334/cstp.230</pub-id></citation></ref>
<ref id="ref86"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Hysko</surname> <given-names>M.</given-names></name> <name><surname>Gace</surname> <given-names>B.</given-names></name> <name><surname>Puto</surname> <given-names>K.</given-names></name></person-group> (<year>2010</year>). Microbial water pollution of Vjosa River and the vegetable contamination by irrigation. BALWOIS: water observation and information system for decision support Ohrid, republic of Macedonia May, 25-29.</citation></ref>
<ref id="ref87"><citation citation-type="book"><person-group person-group-type="author"><name><surname>John</surname> <given-names>J.</given-names></name></person-group> (<year>2015</year>). <source>A Beginner&#x2019;s guide to diatoms</source>. <publisher-loc>Oberreifenberg, Germany</publisher-loc>: <publisher-name>Koeltz Scientific Books</publisher-name>.</citation></ref>
<ref id="ref88"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Juggins</surname> <given-names>S.</given-names></name> <name><surname>Birks</surname> <given-names>H. J. B.</given-names></name></person-group> (<year>2012</year>). <article-title>Quantitative environmental reconstructions from biological data</article-title>. <source>Track. Environ. Change Using Lake Sediments</source> <volume>5</volume>, <fpage>431</fpage>&#x2013;<lpage>494</lpage>. doi: <pub-id pub-id-type="doi">10.1007/978-94-007-2745-8_14</pub-id></citation></ref>
<ref id="ref89"><citation citation-type="confproc"><person-group person-group-type="author"><name><surname>Jungwirth</surname> <given-names>M.</given-names></name> <name><surname>Muhar</surname> <given-names>S.</given-names></name> <name><surname>Schmutz</surname> <given-names>S.</given-names></name></person-group>. (<year>2012</year>). <article-title>Assessing the ecological integrity of running waters</article-title>, In <conf-name>Proceedings of the International Conference, Held in Vienna, Austria</conf-name>, <volume>149</volume>. <conf-loc>Springer Science and Business Media</conf-loc></citation></ref>
<ref id="ref90"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Kaaya</surname> <given-names>L. T.</given-names></name></person-group> (<year>2014</year>). <source>Biological assessment of tropical riverine systems using aquatic macroinvertebrates in Tanzania, East Africa</source>. <comment>Doctoral Thesis,</comment>: <publisher-name>University of Cape Town, South Africa</publisher-name>.</citation></ref>
<ref id="ref91"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kaaya</surname> <given-names>L. T.</given-names></name> <name><surname>Day</surname> <given-names>J. A.</given-names></name> <name><surname>Dallas</surname> <given-names>H. F.</given-names></name></person-group> (<year>2015</year>). <article-title>Tanzania River scoring system (TARISS): a macroinvertebrate-based biotic index for rapid bioassessment of rivers</article-title>. <source>Afr. J. Aquat. Sci.</source> <volume>40</volume>, <fpage>109</fpage>&#x2013;<lpage>117</lpage>. doi: <pub-id pub-id-type="doi">10.2989/16085914.2015.1051941</pub-id></citation></ref>
<ref id="ref92"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kabor&#x00E9;</surname> <given-names>I.</given-names></name> <name><surname>Moog</surname> <given-names>O.</given-names></name> <name><surname>Alp</surname> <given-names>M.</given-names></name> <name><surname>Guenda</surname> <given-names>W.</given-names></name> <name><surname>Koblinger</surname> <given-names>T.</given-names></name> <name><surname>Mano</surname> <given-names>K.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Using macroinvertebrates for ecosystem health assessment in semi-arid streams of Burkina Faso</article-title>. <source>Hydrobiologia</source> <volume>766</volume>, <fpage>57</fpage>&#x2013;<lpage>74</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10750-015-2443-6</pub-id></citation></ref>
<ref id="ref93"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kagalou</surname> <given-names>I.</given-names></name> <name><surname>Leonardos</surname> <given-names>I.</given-names></name> <name><surname>Anastasiadou</surname> <given-names>C.</given-names></name> <name><surname>Neofytou</surname> <given-names>C.</given-names></name></person-group> (<year>2012</year>). <article-title>The DPSIR approach for an integrated river management framework. A preliminary application on a Mediterranean site (Kalamas River-NW Greece)</article-title>. <source>Water Resour. Manag.</source> <volume>26</volume>, <fpage>1677</fpage>&#x2013;<lpage>1692</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s11269-012-9980-9</pub-id></citation></ref>
<ref id="ref94"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kathol</surname> <given-names>M.</given-names></name> <name><surname>Fischer</surname> <given-names>H.</given-names></name> <name><surname>Weitere</surname> <given-names>M.</given-names></name></person-group> (<year>2011</year>). <article-title>Contribution of biofilm-dwelling consumers to pelagic&#x2013;benthic coupling in a large river</article-title>. <source>Freshw. Biol.</source> <volume>56</volume>, <fpage>1160</fpage>&#x2013;<lpage>1172</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1365-2427.2010.02561.x</pub-id></citation></ref>
<ref id="ref95"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Katukiza</surname> <given-names>A. Y.</given-names></name> <name><surname>Ronteltap</surname> <given-names>M.</given-names></name> <name><surname>van der Steen</surname> <given-names>P.</given-names></name> <name><surname>Foppen</surname> <given-names>J. W. A.</given-names></name> <name><surname>Lens</surname> <given-names>P. N. L.</given-names></name></person-group> (<year>2014</year>). <article-title>Quantification of microbial risks to human health caused by waterborne viruses and bacteria in an urban slum</article-title>. <source>J. Appl. Microbiol.</source> <volume>116</volume>, <fpage>447</fpage>&#x2013;<lpage>463</lpage>. doi: <pub-id pub-id-type="doi">10.1111/jam.12368</pub-id>, PMID: <pub-id pub-id-type="pmid">24127653</pub-id></citation></ref>
<ref id="ref96"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kelly</surname> <given-names>M.</given-names></name> <name><surname>Juggins</surname> <given-names>S.</given-names></name> <name><surname>Guthrie</surname> <given-names>R.</given-names></name> <name><surname>Pritchard</surname> <given-names>S.</given-names></name> <name><surname>Jamieson</surname> <given-names>J.</given-names></name> <name><surname>Rippey</surname> <given-names>B.</given-names></name> <etal/></person-group>. (<year>2008</year>). <article-title>Assessment of ecological status in UK rivers using diatoms</article-title>. <source>Freshw. Biol.</source> <volume>53</volume>, <fpage>403</fpage>&#x2013;<lpage>422</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1365-2427.2007.01903.x</pub-id></citation></ref>
<ref id="ref97"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Keough</surname> <given-names>H. L.</given-names></name> <name><surname>Blahna</surname> <given-names>D. J.</given-names></name></person-group> (<year>2006</year>). <article-title>Achieving integrative, collaborative ecosystem management</article-title>. <source>Conserv. Biol.</source> <volume>20</volume>, <fpage>1373</fpage>&#x2013;<lpage>1382</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1523-1739.2006.00445.x</pub-id></citation></ref>
<ref id="ref98"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Khatri</surname> <given-names>N.</given-names></name> <name><surname>Tyagi</surname> <given-names>S.</given-names></name></person-group> (<year>2015</year>). <article-title>Influences of natural and anthropogenic factors on surface and groundwater quality in rural and urban areas</article-title>. <source>Front. Life Sci.</source> <volume>8</volume>, <fpage>23</fpage>&#x2013;<lpage>39</lpage>. doi: <pub-id pub-id-type="doi">10.1080/21553769.2014.933716</pub-id></citation></ref>
<ref id="ref99"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Kleynhans</surname> <given-names>C. J.</given-names></name></person-group> (<year>2007</year>). Module D: Fish response assessment index in river eco-classification: Manual for eco-status determination (version 2). Joint Water Research Commission and Department of Water Affairs and Forestry Report. WRC report no. Tt 330/08. Pretoria</citation></ref>
<ref id="ref100"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Koblinger</surname> <given-names>T.</given-names></name> <name><surname>Trauner</surname> <given-names>D.</given-names></name></person-group> (<year>2013</year>). Benthic invertebrate assemblages in water bodies of Burkina Faso. Master&#x2019;s thesis. BOKU University, Vienna.</citation></ref>
<ref id="ref101"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kulas</surname> <given-names>A.</given-names></name> <name><surname>Gulin</surname> <given-names>V.</given-names></name> <name><surname>Kepcija</surname> <given-names>R. M.</given-names></name> <name><surname>Zutinic</surname> <given-names>P.</given-names></name> <name><surname>Peric</surname> <given-names>M. S.</given-names></name> <name><surname>Orlic</surname> <given-names>S.</given-names></name> <etal/></person-group>. (<year>2021</year>). <article-title>Ciliates (Alveolata, Ciliophora) as bioindicators of environmental pressure: a karstic river case</article-title>. <source>Ecol. Indic.</source> <volume>124</volume>:<fpage>107430</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2021.107430</pub-id></citation></ref>
<ref id="ref102"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Lange-Bertalot</surname> <given-names>H.</given-names></name> <name><surname>Hofmann</surname> <given-names>G.</given-names></name> <name><surname>Werum</surname> <given-names>M.</given-names></name> <name><surname>Kelly</surname> <given-names>M.</given-names></name> <name><surname>Cantonati</surname> <given-names>M.</given-names></name></person-group> (<year>2017</year>). <source>Freshwater benthic diatoms of Central Europe: Over 800 common species used in ecological assessment</source>. <publisher-loc>Schmitten-Oberreifenberg</publisher-loc>: <publisher-name>Koeltz Botanical Books</publisher-name>.</citation></ref>
<ref id="ref103"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Li</surname> <given-names>F.</given-names></name> <name><surname>Peng</surname> <given-names>Y.</given-names></name> <name><surname>Fang</surname> <given-names>W.</given-names></name> <name><surname>Altermatt</surname> <given-names>F.</given-names></name> <name><surname>Xie</surname> <given-names>Y.</given-names></name> <name><surname>Yang</surname> <given-names>J.</given-names></name> <etal/></person-group>. (<year>2018</year>). <article-title>Application of environmental DNA metabarcoding for predicting anthropogenic pollution in rivers</article-title>. <source>Environ. Sci. Technol.</source> <volume>52</volume>, <fpage>11708</fpage>&#x2013;<lpage>11719</lpage>. doi: <pub-id pub-id-type="doi">10.1021/acs.est.8b03869</pub-id>, PMID: <pub-id pub-id-type="pmid">30211550</pub-id></citation></ref>
<ref id="ref104"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lobo</surname> <given-names>E. A.</given-names></name> <name><surname>Schuch</surname> <given-names>M.</given-names></name> <name><surname>Heinrich</surname> <given-names>C. G.</given-names></name> <name><surname>Da Costa</surname> <given-names>A. B.</given-names></name> <name><surname>D&#x00FC;pont</surname> <given-names>A.</given-names></name> <name><surname>Wetzel</surname> <given-names>C. E.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Development of the trophic water quality index (TWQI) for subtropical temperate Brazilian lotic systems</article-title>. <source>Environ. Monit. Assess.</source> <volume>187</volume>, <fpage>354</fpage>&#x2013;<lpage>313</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10661-015-4586-3</pub-id>, PMID: <pub-id pub-id-type="pmid">25971521</pub-id></citation></ref>
<ref id="ref105"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>L&#x00F3;pez-L&#x00F3;pez</surname> <given-names>E.</given-names></name> <name><surname>Sede&#x00F1;o-D&#x00ED;az</surname> <given-names>J. E.</given-names></name></person-group> (<year>2015</year>). <article-title>Biological indicators of water quality: the role of fish and macroinvertebrates as indicators of water quality</article-title>. <source>Environ. Indicat</source>, <fpage>643</fpage>&#x2013;<lpage>661</lpage>. doi: <pub-id pub-id-type="doi">10.1007/978-94-017-9499-2_37</pub-id></citation></ref>
<ref id="ref106"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lowe</surname> <given-names>S.</given-names></name> <name><surname>Dallas</surname> <given-names>H.</given-names></name> <name><surname>Kennedy</surname> <given-names>M.</given-names></name> <name><surname>Taylor</surname> <given-names>J. C.</given-names></name> <name><surname>Gibbins</surname> <given-names>C.</given-names></name> <name><surname>Lang</surname> <given-names>P.</given-names></name> <etal/></person-group>. (<year>2013</year>). <article-title>The SAFRASS biomonitoring scheme: general aspects, macrophytes (ZMTR) and benthic macroinvertebrates (ZISS) protocols</article-title>. <source>Produced ACP Sci. Technol. Program.</source> 1&#x2013;20.</citation></ref>
<ref id="ref107"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lunde</surname> <given-names>K. B.</given-names></name> <name><surname>Resh</surname> <given-names>V. H.</given-names></name></person-group> (<year>2012</year>). <article-title>Development and validation of a macroinvertebrate index of biotic integrity (IBI) for assessing urban impacts to northern California freshwater wetlands</article-title>. <source>Environ. Monit. Assess.</source> <volume>184</volume>, <fpage>3653</fpage>&#x2013;<lpage>3674</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10661-011-2214-4</pub-id>, PMID: <pub-id pub-id-type="pmid">21823050</pub-id></citation></ref>
<ref id="ref108"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>M&#x2019;Erimba</surname> <given-names>C. M.</given-names></name> <name><surname>Mathooko</surname> <given-names>J. M.</given-names></name> <name><surname>Karanja</surname> <given-names>H. T.</given-names></name> <name><surname>Mbaka</surname> <given-names>J. G.</given-names></name></person-group> (<year>2014</year>). <article-title>Monitoring water and habitat quality in six rivers draining the Mt. Kenya and Aberdare catchments using macroinvertebrates and qualitative habitat scoring</article-title>. <source>Egerton J. Sci. Technol.</source> <volume>14</volume>, <fpage>81</fpage>&#x2013;<lpage>104</lpage>.</citation></ref>
<ref id="ref109"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mamun</surname> <given-names>M.</given-names></name> <name><surname>An</surname> <given-names>K. G.</given-names></name></person-group> (<year>2020</year>). <article-title>Stream health assessment using chemical and biological multi-metric models and their relationships with fish trophic and tolerance indicators</article-title>. <source>Ecol. Indic.</source> <volume>111</volume>:<fpage>106055</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2019.106055</pub-id></citation></ref>
<ref id="ref110"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mandal</surname> <given-names>F. B.</given-names></name></person-group> (<year>2023</year>). <article-title>The neglected role of ciliates as bioindicators</article-title>. <source>Israel J. Ecol. Evol.</source> <volume>1</volume>, <fpage>1</fpage>&#x2013;<lpage>9</lpage>. doi: <pub-id pub-id-type="doi">10.1163/22244662-bja10063</pub-id></citation></ref>
<ref id="ref111"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mangi</surname> <given-names>H. O.</given-names></name> <name><surname>Onywere</surname> <given-names>S. M.</given-names></name> <name><surname>Kitur</surname> <given-names>E. C.</given-names></name></person-group> (<year>2023</year>). <article-title>Fish productivity response to water quality variations: a case study of nyumba ya mungu dam, in pangani water basin, Tanzania</article-title>. <source>Int. J. Ecol.</source> <volume>2023</volume>, <fpage>1</fpage>&#x2013;<lpage>11</lpage>. doi: <pub-id pub-id-type="doi">10.1155/2023/7353898</pub-id></citation></ref>
<ref id="ref112"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Mann</surname> <given-names>D.</given-names></name></person-group> (<year>2017</year>). &#x201C;<article-title>Diatoms of the United States 1. Taxonomy, ultrastructure and descriptions of new species and other rarely reported taxa from Lake sediments in the Western USAJP</article-title>&#x201D; in <source>Bibliotheca Diatomologica</source>. eds. <person-group person-group-type="editor"><name><surname>Kociolek</surname> <given-names>B. L.</given-names></name> <name><surname>Bennett</surname> <given-names>D.</given-names></name> <name><surname>Thomas</surname> <given-names>E.</given-names></name> <name><surname>Brady</surname> <given-names>M.</given-names></name> <name><surname>Graeff</surname> <given-names>C.</given-names></name></person-group>, England, UK:Cambridge University Press <fpage>103</fpage>&#x2013;<lpage>108</lpage>.</citation></ref>
<ref id="ref113"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mapenzi</surname> <given-names>L. L.</given-names></name> <name><surname>Shimba</surname> <given-names>M. J.</given-names></name> <name><surname>Moto</surname> <given-names>E. A.</given-names></name> <name><surname>Maghembe</surname> <given-names>R. S.</given-names></name> <name><surname>Mmochi</surname> <given-names>A. J.</given-names></name></person-group> (<year>2020</year>). <article-title>Heavy metals bio-accumulation in tilapia and catfish species in Lake Rukwa ecosystem Tanzania</article-title>. <source>J. Geochem. Explor.</source> <volume>208</volume>:<fpage>106413</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.gexplo.2019.106413</pub-id></citation></ref>
<ref id="ref114"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Masese</surname> <given-names>F. O.</given-names></name> <name><surname>Achieng</surname> <given-names>A. O.</given-names></name> <name><surname>Raburu</surname> <given-names>P. O.</given-names></name> <name><surname>Lawrence</surname> <given-names>T.</given-names></name> <name><surname>Ives</surname> <given-names>J. T.</given-names></name> <name><surname>Nyamweya</surname> <given-names>C.</given-names></name> <etal/></person-group>. (<year>2020</year>). <article-title>Distribution patterns and diversity of riverine fishes of the Lake Victoria Basin, Kenya</article-title>. <source>Int. Rev. Hydrobiol.</source> <volume>105</volume>, <fpage>171</fpage>&#x2013;<lpage>184</lpage>. doi: <pub-id pub-id-type="doi">10.1002/iroh.202002039</pub-id></citation></ref>
<ref id="ref115"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Masese</surname> <given-names>F. O.</given-names></name> <name><surname>Arimoro</surname> <given-names>F. O.</given-names></name> <name><surname>O'Brien</surname> <given-names>G. C.</given-names></name></person-group> (<year>2021</year>). <article-title>Editorial: advances in biomonitoring for the sustainability of vulnerable African riverine ecosystems</article-title>. <source>Front. Water</source> <volume>3</volume>:<fpage>772682</fpage>. doi: <pub-id pub-id-type="doi">10.3389/frwa.2021.772682</pub-id></citation></ref>
<ref id="ref116"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Masese</surname> <given-names>F. O.</given-names></name> <name><surname>Omukoto</surname> <given-names>J. O.</given-names></name> <name><surname>Nyakeya</surname> <given-names>K.</given-names></name></person-group> (<year>2013</year>). <article-title>Biomonitoring as a prerequisite for sustainable water resources: a review of current status, opportunities and challenges to scaling up in East Africa</article-title>. <source>Ecohydrol. Hydrobiol.</source> <volume>13</volume>, <fpage>173</fpage>&#x2013;<lpage>191</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecohyd.2013.06.004</pub-id></citation></ref>
<ref id="ref117"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Masese</surname> <given-names>F. O.</given-names></name> <name><surname>Raburu</surname> <given-names>P. O.</given-names></name></person-group> (<year>2017</year>). <article-title>Improving the performance of the EPT index to accommodate multiple stressors in Afrotropical streams</article-title>. <source>Afr. J. Aquat. Sci.</source> <volume>42</volume>, <fpage>219</fpage>&#x2013;<lpage>233</lpage>. doi: <pub-id pub-id-type="doi">10.2989/16085914.2017.1392282</pub-id></citation></ref>
<ref id="ref118"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Masese</surname> <given-names>F. O.</given-names></name> <name><surname>Raburu</surname> <given-names>P. O.</given-names></name> <name><surname>Muchiri</surname> <given-names>M.</given-names></name></person-group> (<year>2009</year>). <article-title>A preliminary benthic macroinvertebrate index of biotic integrity (B-IBI) for monitoring the Moiben River, Lake Victoria Basin, Kenya</article-title>. <source>Afr. J. Aquat. Sci.</source> <volume>34</volume>, <fpage>1</fpage>&#x2013;<lpage>14</lpage>. doi: <pub-id pub-id-type="doi">10.2989/AJAS.2009.34.1.1.726</pub-id></citation></ref>
<ref id="ref119"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Masese</surname> <given-names>F. O.</given-names></name> <name><surname>Wanderi</surname> <given-names>E. W.</given-names></name> <name><surname>Nyakeya</surname> <given-names>K.</given-names></name> <name><surname>Achieng</surname> <given-names>A. O.</given-names></name> <name><surname>Fouchy</surname> <given-names>K.</given-names></name> <name><surname>McClain</surname> <given-names>M. E.</given-names></name></person-group> (<year>2023</year>). <article-title>Bioassessment of multiple stressors in Afrotropical rivers: evaluating the performance of a macroinvertebrate-based index of biotic integrity, diversity, and regional biotic indices</article-title>. <source>Front. Environ. Sci.</source> <volume>11</volume>:<fpage>307</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fenvs.2023.1015623</pub-id></citation></ref>
<ref id="ref120"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mataba</surname> <given-names>G. R.</given-names></name> <name><surname>Verhaert</surname> <given-names>V.</given-names></name> <name><surname>Blust</surname> <given-names>R.</given-names></name> <name><surname>Bervoets</surname> <given-names>L.</given-names></name></person-group> (<year>2016</year>). <article-title>Distribution of trace elements in the aquatic ecosystem of the Thigithe river and the fish <italic>Labeo victorianus</italic> in Tanzania and possible risks for human consumption</article-title>. <source>Sci. Total Environ.</source> <volume>547</volume>, <fpage>48</fpage>&#x2013;<lpage>59</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.scitotenv.2015.12.123</pub-id>, PMID: <pub-id pub-id-type="pmid">26780131</pub-id></citation></ref>
<ref id="ref121"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Maurya</surname> <given-names>G. K.</given-names></name> <name><surname>Pachauri</surname> <given-names>S.</given-names></name></person-group> (<year>2022</year>). <article-title>Fungi: the indicators of pollution</article-title>. <source>Freshwater Mycol.</source> <volume>16</volume>, <fpage>277</fpage>&#x2013;<lpage>296</lpage>. doi: <pub-id pub-id-type="doi">10.1016/B978-0-323-91232-7.00012-X</pub-id></citation></ref>
<ref id="ref122"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mbao</surname> <given-names>E. O.</given-names></name> <name><surname>Gao</surname> <given-names>J.</given-names></name> <name><surname>Wang</surname> <given-names>Y.</given-names></name> <name><surname>Sitoki</surname> <given-names>L.</given-names></name> <name><surname>Pan</surname> <given-names>Y.</given-names></name> <name><surname>Wang</surname> <given-names>B.</given-names></name></person-group> (<year>2020</year>). <article-title>Sensitivity and reliability of diatom metrics and guilds in detecting the impact of urbanization on streams</article-title>. <source>Ecol. Indic.</source> <volume>116</volume>:<fpage>106506</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2020.106506</pub-id></citation></ref>
<ref id="ref123"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mbao</surname> <given-names>E. O.</given-names></name> <name><surname>Nyika</surname> <given-names>J.</given-names></name> <name><surname>Sheng</surname> <given-names>T.</given-names></name> <name><surname>Ochieng</surname> <given-names>B.</given-names></name> <name><surname>Sitoki</surname> <given-names>L.</given-names></name> <name><surname>Oduor</surname> <given-names>S. O.</given-names></name> <etal/></person-group>. (<year>2023</year>). <article-title>A bibliometric study on diatom DNA metabarcording for water quality monitoring: a global perspective</article-title>. <source>Afr. J. Aquat. Sci.</source> <volume>48</volume>, <fpage>345</fpage>&#x2013;<lpage>356</lpage>. doi: <pub-id pub-id-type="doi">10.2989/16085914.2023.2282493</pub-id></citation></ref>
<ref id="ref124"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mbao</surname> <given-names>E. O.</given-names></name> <name><surname>Odinga</surname> <given-names>E. S.</given-names></name> <name><surname>Nyika</surname> <given-names>J.</given-names></name> <name><surname>Ochieng</surname> <given-names>B.</given-names></name> <name><surname>Kitaka</surname> <given-names>N.</given-names></name></person-group> (<year>2022</year>). <article-title>A bibliometric study on the use of diatoms in water quality monitoring and bioassessment in Africa across 10-year (2012&#x2013;2022) period</article-title>. <source>Aquat. Sci.</source> <volume>84</volume>:<fpage>58</fpage>. doi: <pub-id pub-id-type="doi">10.1007/s00027-022-00891-2</pub-id></citation></ref>
<ref id="ref125"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Melcher</surname> <given-names>A.</given-names></name> <name><surname>Ouedraogo</surname> <given-names>R.</given-names></name> <name><surname>Oueda</surname> <given-names>A.</given-names></name> <name><surname>Somda</surname> <given-names>J.</given-names></name> <name><surname>Toe</surname> <given-names>P.</given-names></name> <name><surname>Sendzimir</surname> <given-names>J.</given-names></name> <etal/></person-group>. (<year>2020</year>). SUSFISHBook-sustainable fisheries and water management; transformation pathways for Burkina Faso. SUSFISH+ Project Consortium. Available at: <ext-link xlink:href="http://susfish.boku.ac.at" ext-link-type="uri">http://susfish.boku.ac.at</ext-link> (Accessed November 6, 2023)</citation></ref>
<ref id="ref126"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mills</surname> <given-names>K.</given-names></name> <name><surname>Ryves</surname> <given-names>D. B.</given-names></name></person-group> (<year>2012</year>). <article-title>Diatom-based models for inferring past water chemistry in western Ugandan crater lakes</article-title>. <source>J. Paleolimnol.</source> <volume>48</volume>, <fpage>383</fpage>&#x2013;<lpage>399</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10933-012-9609-2</pub-id></citation></ref>
<ref id="ref1313"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Mochizuki</surname> <given-names>Y.</given-names></name> <name><surname>Yarime</surname> <given-names>M.</given-names></name></person-group> (<year>2016</year>). &#x201C;<article-title>Education for sustainable development and sustainability science</article-title>&#x201D; in <source>Re-Purposing Higher Education and Research</source>. eds. <person-group person-group-type="editor"><name><surname>Barth</surname> <given-names>M.</given-names></name> <name><surname>Michelsen</surname> <given-names>G.</given-names></name> <name><surname>Thomas</surname> <given-names>I.</given-names></name> <name><surname>Rieckmann</surname> <given-names>M.</given-names></name></person-group> (<publisher-loc>London</publisher-loc>: <publisher-name>Routledge Handbook of Higher Education for Sustainable Development</publisher-name>), <fpage>11</fpage>&#x2013;<lpage>24</lpage>.</citation></ref>
<ref id="ref127"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mohammed-Geba</surname> <given-names>K.</given-names></name> <name><surname>Galal</surname> <given-names>M.</given-names></name> <name><surname>Osman</surname> <given-names>G.</given-names></name> <name><surname>Soliman</surname> <given-names>M.</given-names></name></person-group> (<year>2019</year>). <article-title>Application of DNA barcoding for identifying potential biotechnological candidate organisms from the River Nile, Egypt</article-title>. <source>Egypt. J. Aquatic Biol. Fisheries</source> <volume>23</volume>, <fpage>563</fpage>&#x2013;<lpage>575</lpage>. doi: <pub-id pub-id-type="doi">10.21608/ejabf.2019.62580</pub-id></citation></ref>
<ref id="ref128"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Moog</surname> <given-names>O.</given-names></name> <name><surname>Schmutz</surname> <given-names>S.</given-names></name> <name><surname>Schwarzinger</surname> <given-names>I.</given-names></name></person-group> (<year>2018</year>). &#x201C;<article-title>Biomonitoring and bioasssessment</article-title>&#x201D; in <source>Riverine ecosystem management</source>. eds. <person-group person-group-type="editor"><name><surname>Schmutz</surname> <given-names>S.</given-names></name> <name><surname>Sendzimir</surname> <given-names>J.</given-names></name></person-group>, (<publisher-name>Switzerland: Springer International Publishing</publisher-name>), <fpage>371</fpage>&#x2013;<lpage>390</lpage>.</citation></ref>
<ref id="ref129"><citation citation-type="confproc"><person-group person-group-type="author"><name><surname>Mthimkhulu</surname> <given-names>S.</given-names></name> <name><surname>Dallas</surname> <given-names>H.</given-names></name> <name><surname>Day</surname> <given-names>J.</given-names></name> <name><surname>Hoko</surname> <given-names>Z.</given-names></name></person-group> (<year>2004</year>). <article-title>Biological assessment of the state of the water quality in the Mbuluzi River, Swaziland</article-title>. In <conf-name>In Proceedings of the IWA specialist group conference on water and wastewater management for developing countries</conf-name>.</citation></ref>
<ref id="ref130"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Musonge</surname> <given-names>P. L. S.</given-names></name> <name><surname>Boets</surname> <given-names>P.</given-names></name> <name><surname>Lock</surname> <given-names>K.</given-names></name> <name><surname>Ambarita</surname> <given-names>M. N. D.</given-names></name> <name><surname>Forio</surname> <given-names>M. A. E.</given-names></name> <name><surname>Goethals</surname> <given-names>P. L.</given-names></name></person-group> (<year>2020</year>). <article-title>Rwenzori score (RS): a benthic macroinvertebrate index for biomonitoring Rivers and streams in the Rwenzori region, Uganda</article-title>. <source>Sustainability</source> <volume>12</volume>:<fpage>10473</fpage>. doi: <pub-id pub-id-type="doi">10.3390/su122410473</pub-id></citation></ref>
<ref id="ref131"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Mutai</surname> <given-names>E. K.</given-names></name></person-group> (<year>2013</year>). Impact of water and sediment quality on bacterial densities and diversities in marine pond culture system in Mtwapa Creek, Kenya. Dissertation, University of Eldoret.</citation></ref>
<ref id="ref132"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mwakalobo</surname> <given-names>S.</given-names></name> <name><surname>Lazaro</surname> <given-names>S.</given-names></name> <name><surname>Lugomela</surname> <given-names>C.</given-names></name> <name><surname>Lyimo</surname> <given-names>T. J.</given-names></name> <name><surname>Thomas</surname> <given-names>J.</given-names></name></person-group> (<year>2013</year>). <article-title>Assessment of faecal bacteria contamination in selected coastal waters of Tanzania</article-title>. <source>J. Biol. Life Sci.</source> <volume>4</volume>, <fpage>63</fpage>&#x2013;<lpage>82</lpage>. doi: <pub-id pub-id-type="doi">10.5296/jbls.v4i2.3414</pub-id></citation></ref>
<ref id="ref133"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mwedzi</surname> <given-names>T.</given-names></name> <name><surname>Bere</surname> <given-names>T.</given-names></name> <name><surname>Mangadze</surname> <given-names>T.</given-names></name></person-group> (<year>2016</year>). <article-title>Macroinvertebrate assemblages in agricultural, mining, and urban tropical streams: implications for conservation and management</article-title>. <source>Environ. Sci. Pollut. Res.</source> <volume>23</volume>, <fpage>11181</fpage>&#x2013;<lpage>11192</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s11356-016-6340-y</pub-id>, PMID: <pub-id pub-id-type="pmid">26920532</pub-id></citation></ref>
<ref id="ref134"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mzungu</surname> <given-names>E.</given-names></name> <name><surname>Yakub</surname> <given-names>S.</given-names></name> <name><surname>Anyimba</surname> <given-names>E. S.</given-names></name></person-group> (<year>2022</year>). <article-title>Macroinvertebrates as bio-indicators of water quality in Omubira stream, in Kakamega County, Kenya</article-title>. <source>Int. J. Fisheries Aquatic Stud.</source> <volume>10</volume>, <fpage>70</fpage>&#x2013;<lpage>77</lpage>. doi: <pub-id pub-id-type="doi">10.22271/fish.2022.v10.i4a.2707</pub-id></citation></ref>
<ref id="ref135"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Naiga</surname> <given-names>R.</given-names></name> <name><surname>Penker</surname> <given-names>M.</given-names></name></person-group> (<year>2014</year>). <article-title>Determinants of Users' willingness to contribute to safe water provision in rural Uganda</article-title>. <source>J. Local Self Government</source> <volume>12</volume>, <fpage>695</fpage>&#x2013;<lpage>714</lpage>. doi: <pub-id pub-id-type="doi">10.4335/12.3.695-714(2014)</pub-id></citation></ref>
<ref id="ref136"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Naigaga</surname> <given-names>I.</given-names></name> <name><surname>Kaiser</surname> <given-names>H.</given-names></name> <name><surname>Muller</surname> <given-names>W. J.</given-names></name> <name><surname>Ojok</surname> <given-names>L.</given-names></name> <name><surname>Mbabazi</surname> <given-names>D.</given-names></name> <name><surname>Magezi</surname> <given-names>G.</given-names></name> <etal/></person-group>. (<year>2011</year>). <article-title>Fish as bioindicators in aquatic environmental pollution assessment: a case study in Lake Victoria wetlands, Uganda</article-title>. <source>Physics Chem. Earth</source> <volume>36</volume>, <fpage>918</fpage>&#x2013;<lpage>928</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.pce.2011.07.066</pub-id></citation></ref>
<ref id="ref137"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nalugwa</surname> <given-names>A.</given-names></name> <name><surname>J&#x00F8;rgensen</surname> <given-names>A.</given-names></name> <name><surname>Nyakaana</surname> <given-names>S.</given-names></name> <name><surname>Kristensen</surname> <given-names>T. K.</given-names></name></person-group> (<year>2010</year>). <article-title>Molecular phylogeny of Bulinus (Gastropoda: Planorbidae) reveals the presence of three species complexes in the Albertine rift freshwater bodies</article-title>. <source>Int J Genet Mol Biol</source> <volume>2</volume>, <fpage>130</fpage>&#x2013;<lpage>139</lpage>.</citation></ref>
<ref id="ref138"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Namwaya</surname> <given-names>D. W.</given-names></name> <name><surname>Raburu</surname> <given-names>P. O.</given-names></name> <name><surname>Lunaligo</surname> <given-names>L.</given-names></name></person-group> (<year>2013</year>). <article-title>Diatoms as bioindicators in monitoring water quality, river Sosiani, Kenya</article-title>. <source>Afr. J. Educ. Sci. Technol.</source> <volume>1</volume>, <fpage>128</fpage>&#x2013;<lpage>138</lpage>. doi: <pub-id pub-id-type="doi">10.2022/ajest.v1i3.204</pub-id></citation></ref>
<ref id="ref1515"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ndebele-Murisa</surname> <given-names>M. R.</given-names></name></person-group> (<year>2012</year>). <article-title>Biological monitoring and pollution assessment of the Mukuvisi River, Harare</article-title>. <source>Zimbabwe. Lakes &#x0026; Reservoirs Management.</source> <volume>17</volume>, <fpage>73</fpage>&#x2013;<lpage>80</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1440-1770.2012.00497.x</pub-id></citation></ref>
<ref id="ref139"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ngonyani</surname> <given-names>H.</given-names></name> <name><surname>Mourad</surname> <given-names>K. A.</given-names></name></person-group> (<year>2019</year>). <article-title>Role of water user associations on the restoration of the ecosystem in Tanzania</article-title>. <source>Water</source> <volume>11</volume>:<fpage>141</fpage>. doi: <pub-id pub-id-type="doi">10.3390/w11010141</pub-id></citation></ref>
<ref id="ref1616"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Njue</surname> <given-names>N.</given-names></name> <name><surname>Gr&#x00E4;f</surname> <given-names>J.</given-names></name> <name><surname>Weeser</surname> <given-names>B.</given-names></name> <name><surname>Rufino</surname> <given-names>M. C.</given-names></name> <name><surname>Breuer</surname> <given-names>L.</given-names></name> <name><surname>Jacobs</surname> <given-names>S. R.</given-names></name></person-group> (<year>2021</year>). <article-title>Monitoring of suspended sediments in a tropical forested landscape with citizen science</article-title>. <source>Frontiers in Water</source> <volume>3</volume>:<fpage>656770</fpage>. doi: <pub-id pub-id-type="doi">10.3389/frwa.2021.656770</pub-id></citation></ref>
<ref id="ref140"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Norris</surname> <given-names>R. H.</given-names></name> <name><surname>Hawkins</surname> <given-names>C. P.</given-names></name></person-group> (<year>2000</year>). <article-title>Monitoring river health</article-title>. <source>Hydrobiologia</source> <volume>435</volume>, <fpage>5</fpage>&#x2013;<lpage>17</lpage>. doi: <pub-id pub-id-type="doi">10.1023/A:1004176507184</pub-id></citation></ref>
<ref id="ref1717"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Obiero</surname> <given-names>K. O.</given-names></name> <name><surname>Abila</surname> <given-names>R. O.</given-names></name> <name><surname>Njiru</surname> <given-names>M. J.</given-names></name> <name><surname>Raburu</surname> <given-names>P. O.</given-names></name> <name><surname>Achieng</surname> <given-names>A. O.</given-names></name> <name><surname>Kundu</surname> <given-names>R.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>The challenges of management: Recent experiences in implementing fisheries co&#x2010;management in Lake Victoria, Kenya</article-title>. <source>Lakes &#x0026; Reservoirs: Research &#x0026; Management</source> <volume>20</volume>, <fpage>139</fpage>&#x2013;<lpage>154</lpage>. doi: <pub-id pub-id-type="doi">10.1111/lre.12095</pub-id></citation></ref>
<ref id="ref141"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Oberg</surname> <given-names>H.</given-names></name> <name><surname>Andersen</surname> <given-names>T. J.</given-names></name> <name><surname>Westerberg</surname> <given-names>L. O.</given-names></name> <name><surname>Risberg</surname> <given-names>J.</given-names></name> <name><surname>Holmgren</surname> <given-names>K.</given-names></name></person-group> (<year>2012</year>). <article-title>A diatom record of recent environmental change in Lake Duluti, northern Tanzania</article-title>. <source>J. Paleolimnol.</source> <volume>48</volume>, <fpage>401</fpage>&#x2013;<lpage>416</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10933-012-9615-4</pub-id></citation></ref>
<ref id="ref1818"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Obubu</surname> <given-names>J. P.</given-names></name></person-group> (<year>2010</year>). <source>Identifying Applicable Bio-assessment and monitoring methods for sustainable management of Ugandan river quality using macro-benthic invertebrates as indicators</source>. <comment>MSc thesis.</comment> <publisher-loc>The Netherlands</publisher-loc>: <publisher-name>UNESCO&#x2013;IPGL</publisher-name>.</citation></ref>
<ref id="ref142"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Obubu</surname> <given-names>J. P.</given-names></name> <name><surname>Mengistou</surname> <given-names>S.</given-names></name> <name><surname>Fetahi</surname> <given-names>T.</given-names></name> <name><surname>Graf</surname> <given-names>W.</given-names></name> <name><surname>Odong</surname> <given-names>R.</given-names></name></person-group> (<year>2021</year>). <article-title>A critical review of macroinvertebrate-based bioassessment approaches in Africa&#x2019;s lotic systems: developments, challenges, and legal requirements</article-title>. <source>Afr. J. Aquat. Sci.</source> <volume>46</volume>, <fpage>377</fpage>&#x2013;<lpage>389</lpage>. doi: <pub-id pub-id-type="doi">10.2989/16085914.2021.1924609</pub-id></citation></ref>
<ref id="ref3001"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ochieng</surname> <given-names>H.</given-names></name> <name><surname>Gandhi</surname> <given-names>W. P.</given-names></name> <name><surname>Magezi</surname> <given-names>G.</given-names></name> <name><surname>Okot-Okumu</surname> <given-names>J.</given-names></name> <name><surname>Odong</surname> <given-names>R.</given-names></name></person-group> (<year>2021</year>). <article-title>Diversity of benthic macroinvertebrates in anthropogenically disturbed Aturukuku River, Eastern Uganda</article-title>. <source>African Zoology</source> <volume>56</volume>, <fpage>85</fpage>&#x2013;<lpage>103</lpage>. doi: <pub-id pub-id-type="doi">10.1080/15627020.2021.1885309</pub-id></citation></ref>
<ref id="ref143"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ochieng</surname> <given-names>H.</given-names></name> <name><surname>Magezi</surname> <given-names>G.</given-names></name> <name><surname>Gandhi</surname> <given-names>W. P.</given-names></name> <name><surname>Okot-Okumu</surname> <given-names>J.</given-names></name> <name><surname>Odong</surname> <given-names>R.</given-names></name></person-group> (<year>2022</year>). <article-title>Epipelic diatom diversity as a bioindicator in river Aturukuku, eastern Uganda</article-title>. <source>Plant Ecol. Diversity</source> <volume>15</volume>, <fpage>77</fpage>&#x2013;<lpage>92</lpage>. doi: <pub-id pub-id-type="doi">10.1080/17550874.2022.2058430</pub-id></citation></ref>
<ref id="ref144"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Odhiambo</surname> <given-names>C. O.</given-names></name> <name><surname>Ngugi</surname> <given-names>C. C.</given-names></name> <name><surname>Sharma</surname> <given-names>R. R.</given-names></name> <name><surname>Oyoo-Okoth</surname> <given-names>E.</given-names></name></person-group> (<year>2024</year>). <article-title>Macroinvertebrate metrics and lipid profiles as potential indicators of land use influence in a high altitude tropical highland stream (Sagana River basin, Kenya)</article-title>. <source>Ecol. Indic.</source> <volume>160</volume>:<fpage>111848</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2024.111848</pub-id></citation></ref>
<ref id="ref145"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ogbeibu</surname> <given-names>A. E.</given-names></name> <name><surname>Omoigberale</surname> <given-names>M. O.</given-names></name> <name><surname>Ezenwa</surname> <given-names>I. M.</given-names></name> <name><surname>Oboh</surname> <given-names>I. P.</given-names></name></person-group> (<year>2013</year>). <article-title>Application of some biometric indices in the assessment of the water quality of the Benin River, Niger Delta, Nigeria</article-title>. <source>Trop. Freshw. Biol.</source> <volume>22</volume>, <fpage>49</fpage>&#x2013;<lpage>64</lpage>. doi: <pub-id pub-id-type="doi">10.4314/tfb.v22i1.5</pub-id></citation></ref>
<ref id="ref146"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Oigara</surname> <given-names>D. K.</given-names></name> <name><surname>Masese</surname> <given-names>F. O.</given-names></name></person-group> (<year>2017</year>). <article-title>Evaluation of the south African scoring system (SASS 5) biotic index for assessing the ecological condition of the Mara River, Kenya</article-title>. <source>Afr. J. Educ. Sci. Technol.</source> <volume>4</volume>, <fpage>41</fpage>&#x2013;<lpage>51</lpage>. doi: <pub-id pub-id-type="doi">10.2022/ajest.v4i2.4</pub-id></citation></ref>
<ref id="ref147"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Olal</surname> <given-names>B. A.</given-names></name> <name><surname>Owuor</surname> <given-names>J. B.</given-names></name> <name><surname>Tsingalia</surname> <given-names>H. M.</given-names></name> <name><surname>Osano</surname> <given-names>O.</given-names></name></person-group> (<year>2014</year>). <article-title>Assessment of microbiological contaminants in community water sources in lower Nyakach division, Kisumu County, Kenya</article-title>. <source>Biosciences</source> <volume>74</volume>, <fpage>26935</fpage>&#x2013;<lpage>26942</lpage>.</citation></ref>
<ref id="ref148"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Omondi</surname> <given-names>L.A.</given-names></name></person-group> (<year>2021</year>). Evaluation of Faecal Indicator Bacteria and antimicrobial resistance of <italic>Escherichia coli</italic> isolated from river Njoro, Nakuru County, Kenya. Master&#x2019;s thesis. Egerton University.</citation></ref>
<ref id="ref149"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Osure</surname> <given-names>G.</given-names></name> <name><surname>Getabu</surname> <given-names>A.</given-names></name> <name><surname>Aura</surname> <given-names>C.</given-names></name> <name><surname>Omondi</surname> <given-names>R.</given-names></name> <name><surname>Basweti</surname> <given-names>E.</given-names></name></person-group> (<year>2022</year>). <article-title>Longitudinal fish species diversity and distribution in a medium-sized afro-tropical river in the Lake Victoria Basin</article-title>. <source>Pan Africa Sci. J.</source> <volume>2</volume>, <fpage>246</fpage>&#x2013;<lpage>274</lpage>. doi: <pub-id pub-id-type="doi">10.47787/pasj.v2i2.18</pub-id></citation></ref>
<ref id="ref150"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Palmer</surname> <given-names>R. W.</given-names></name> <name><surname>Taylor</surname> <given-names>E. D.</given-names></name></person-group> (<year>2004</year>). <article-title>The Namibian scoring system (NASS) version 2 rapid bio-assessment method for rivers</article-title>. <source>Afr. J. Aquat. Sci.</source> <volume>29</volume>, <fpage>229</fpage>&#x2013;<lpage>234</lpage>. doi: <pub-id pub-id-type="doi">10.2989/16085910409503814</pub-id></citation></ref>
<ref id="ref151"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pandey</surname> <given-names>L. K.</given-names></name> <name><surname>Sharma</surname> <given-names>Y. C.</given-names></name> <name><surname>Park</surname> <given-names>J.</given-names></name> <name><surname>Choi</surname> <given-names>S.</given-names></name> <name><surname>Lee</surname> <given-names>H.</given-names></name> <name><surname>Lyu</surname> <given-names>J.</given-names></name> <etal/></person-group>. (<year>2018</year>). <article-title>Evaluating features of periphytic diatom communities as biomonitoring tools in fresh, brackish and marine waters</article-title>. <source>Aquat. Toxicol.</source> <volume>194</volume>, <fpage>67</fpage>&#x2013;<lpage>77</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.aquatox.2017.11.003</pub-id>, PMID: <pub-id pub-id-type="pmid">29156433</pub-id></citation></ref>
<ref id="ref152"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Pantle</surname> <given-names>R.</given-names></name> <name><surname>Buck</surname> <given-names>H.</given-names></name></person-group> (<year>1955</year>). <source>Die biologische Uberwachung der Gew&#x00E4;sser und die Darstellung der Ergebnisse</source>. Green World Foundation Journal. 96, 604&#x2013;604.</citation></ref>
<ref id="ref153"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Parmar</surname> <given-names>T. K.</given-names></name> <name><surname>Rawtani</surname> <given-names>D.</given-names></name> <name><surname>Agrawal</surname> <given-names>Y. K.</given-names></name></person-group> (<year>2016</year>). <article-title>Bioindicators: the natural indicator of environmental pollution</article-title>. <source>Front. Life Sci.</source> <volume>9</volume>, <fpage>110</fpage>&#x2013;<lpage>118</lpage>. doi: <pub-id pub-id-type="doi">10.1080/21553769.2016.1162753</pub-id></citation></ref>
<ref id="ref154"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pawlowski</surname> <given-names>J.</given-names></name> <name><surname>Kelly-Quinn</surname> <given-names>M.</given-names></name> <name><surname>Altermatt</surname> <given-names>F.</given-names></name> <name><surname>Apotheloz-Perret-Gentil</surname> <given-names>L.</given-names></name> <name><surname>Beja</surname> <given-names>P.</given-names></name> <name><surname>Boggero</surname> <given-names>A.</given-names></name> <etal/></person-group>. (<year>2018</year>). <article-title>The future of biotic indices in the ecogenomic era: integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems</article-title>. <source>Sci. Total Environ.</source> <volume>637-638</volume>, <fpage>1295</fpage>&#x2013;<lpage>1310</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.scitotenv.2018.05.002</pub-id></citation></ref>
<ref id="ref2001"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Persoone</surname> <given-names>G.</given-names></name> <name><surname>De Pauw</surname> <given-names>N.</given-names></name></person-group> (<year>1979</year>). &#x201C;<article-title>Systems of biological indicators for water quality assessment</article-title>&#x201D; in <source>Biological aspects of freshwater pollution</source> (<publisher-name>Pergamon</publisher-name>), <fpage>39</fpage>&#x2013;<lpage>75</lpage>. doi: <pub-id pub-id-type="doi">10.1016/B978-0-08-023442-7.50007-4</pub-id></citation></ref>
<ref id="ref155"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Potapova</surname> <given-names>M.</given-names></name> <name><surname>Charles</surname> <given-names>D. F.</given-names></name></person-group> (<year>2003</year>). <article-title>Distribution of benthic diatoms in US rivers in relation to conductivity and ionic composition</article-title>. <source>Freshw. Biol.</source> <volume>48</volume>, <fpage>1311</fpage>&#x2013;<lpage>1328</lpage>. doi: <pub-id pub-id-type="doi">10.1046/j.1365-2427.2003.01080.x</pub-id></citation></ref>
<ref id="ref156"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Raburu</surname> <given-names>P. O.</given-names></name> <name><surname>Masese</surname> <given-names>F. O.</given-names></name></person-group> (<year>2012</year>). <article-title>Development of a fish-based index of biotic integrity (FIBI) for monitoring riverine ecosystems in the Lake Victoria drainage basin, Kenya</article-title>. <source>River Res. Appl.</source> <volume>28</volume>, <fpage>23</fpage>&#x2013;<lpage>38</lpage>. doi: <pub-id pub-id-type="doi">10.1002/rra.1428</pub-id></citation></ref>
<ref id="ref157"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Raburu</surname> <given-names>P. O.</given-names></name> <name><surname>Masese</surname> <given-names>F. O.</given-names></name> <name><surname>Mwasi</surname> <given-names>B. N.</given-names></name></person-group> (<year>2022</year>). <article-title>Low diversity of fishes in high elevation Afrotromontane streams renders them unsuitable for biomonitoring</article-title>. <source>Afr. J. Ecol.</source> <volume>60</volume>, <fpage>1029</fpage>&#x2013;<lpage>1042</lpage>. doi: <pub-id pub-id-type="doi">10.1111/aje.13056</pub-id></citation></ref>
<ref id="ref158"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Radhakrishnan</surname> <given-names>R.</given-names></name> <name><surname>Jayaprakas</surname> <given-names>V.</given-names></name></person-group> (<year>2015</year>). <article-title>Free living protozoans as bioindicators in Vembanad Lake, Kerala, India, an important Ramsar site</article-title>. <source>Int. J. Fisheries Aquatic Stud.</source> <volume>2</volume>, <fpage>192</fpage>&#x2013;<lpage>197</lpage>.</citation></ref>
<ref id="ref160"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Requier</surname> <given-names>F.</given-names></name> <name><surname>Andersson</surname> <given-names>G. K.</given-names></name> <name><surname>Oddi</surname> <given-names>F. J.</given-names></name> <name><surname>Garibaldi</surname> <given-names>L. A.</given-names></name></person-group> (<year>2020</year>). <article-title>Citizen science in developing countries: how to improve volunteer participation</article-title>. <source>Front. Ecol. Environ.</source> <volume>18</volume>, <fpage>101</fpage>&#x2013;<lpage>108</lpage>. doi: <pub-id pub-id-type="doi">10.1002/fee.2150</pub-id></citation></ref>
<ref id="ref161"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Riato</surname> <given-names>L.</given-names></name> <name><surname>Leira</surname> <given-names>M.</given-names></name> <name><surname>Della Bella</surname> <given-names>V.</given-names></name> <name><surname>Oberholster</surname> <given-names>P.</given-names></name></person-group> (<year>2018</year>). <article-title>Development of a diatom-based multimetric index for acid mine drainage impacted depressional wetlands</article-title>. <source>Sci. Total Environ.</source> <volume>612</volume>, <fpage>214</fpage>&#x2013;<lpage>222</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.scitotenv.2017.08.181</pub-id>, PMID: <pub-id pub-id-type="pmid">28850840</pub-id></citation></ref>
<ref id="ref162"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Richards</surname> <given-names>N.</given-names></name></person-group> (<year>2019</year>). <article-title>Water users associations in Tanzania: local governance for whom?</article-title> <source>Water</source> <volume>11</volume>:<fpage>2178</fpage>. doi: <pub-id pub-id-type="doi">10.3390/w11102178</pub-id></citation></ref>
<ref id="ref1001"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Richards</surname> <given-names>N.</given-names></name> <name><surname>Syallow</surname> <given-names>D.</given-names></name></person-group> (<year>2018</year>). <article-title>Water resources users associations in the Mara Basin, Kenya: Pitfalls and opportunities for community based natural resources management</article-title>. <source>Frontiers in Environmental Science</source>, <volume>6</volume>:<fpage>138</fpage>. Volume 6 &#x2013; 2018. doi: <pub-id pub-id-type="doi">10.3389/fenvs.2018.00138</pub-id></citation></ref>
<ref id="ref163"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rolston</surname> <given-names>A.</given-names></name> <name><surname>Jennings</surname> <given-names>E.</given-names></name> <name><surname>Linnane</surname> <given-names>S.</given-names></name></person-group> (<year>2017</year>). <article-title>Water matters: An assessment of opinion on water management and community engagement in the Republic of Ireland and the United Kingdom</article-title>. <source>PLoS One</source> <volume>12</volume>:<fpage>0174957</fpage>. doi: <pub-id pub-id-type="doi">10.1371/journal.pone.0174957</pub-id></citation></ref>
<ref id="ref164"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ruaro</surname> <given-names>R.</given-names></name> <name><surname>Gubiani</surname> <given-names>E. A.</given-names></name> <name><surname>Hughes</surname> <given-names>R. M.</given-names></name> <name><surname>Mormul</surname> <given-names>R. P.</given-names></name></person-group> (<year>2020</year>). <article-title>Global trends and challenges in multimetric indices of biological condition</article-title>. <source>Ecol. Indic.</source> <volume>110</volume>:<fpage>105862</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2019.105862</pub-id></citation></ref>
<ref id="ref165"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Salinas-Camarillo</surname> <given-names>V. H.</given-names></name> <name><surname>Carmona-Jimenez</surname> <given-names>J.</given-names></name> <name><surname>Lobo</surname> <given-names>E. A.</given-names></name></person-group> (<year>2020</year>). <article-title>Development of the diatom ecological quality index (DEQI) for peri-urban mountain streams in the basin of Mexico</article-title>. <source>Environ. Sci. Pollut. Res.</source> <volume>28</volume>, <fpage>14555</fpage>&#x2013;<lpage>14575</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s11356-020-11604-3</pub-id>, PMID: <pub-id pub-id-type="pmid">33211290</pub-id></citation></ref>
<ref id="ref166"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Samson</surname> <given-names>R.</given-names></name> <name><surname>Rajput</surname> <given-names>V.</given-names></name> <name><surname>Shah</surname> <given-names>M.</given-names></name> <name><surname>Yadav</surname> <given-names>R.</given-names></name> <name><surname>Sarode</surname> <given-names>P.</given-names></name> <name><surname>Dastager</surname> <given-names>S. G.</given-names></name> <etal/></person-group>. (<year>2020</year>). <article-title>Deciphering taxonomic and functional diversity of fungi as potential bioindicators within confluence stretch of Ganges and Yamuna Rivers, impacted by anthropogenic activities</article-title>. <source>Chemosphere</source> <volume>252</volume>:<fpage>126507</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.chemosphere.2020.126507</pub-id>, PMID: <pub-id pub-id-type="pmid">32200181</pub-id></citation></ref>
<ref id="ref167"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schmidt</surname> <given-names>R. C.</given-names></name> <name><surname>Woods</surname> <given-names>T.</given-names></name> <name><surname>Nyingi</surname> <given-names>W. D.</given-names></name></person-group> (<year>2022</year>). <article-title>Drivers of species richness and beta diversity of fishes in an Afrotropical intermittent river system</article-title>. <source>Ecol. Evol.</source> <volume>12</volume>:<fpage>e9659</fpage>. doi: <pub-id pub-id-type="doi">10.1002/ece3.9659</pub-id>, PMID: <pub-id pub-id-type="pmid">36590335</pub-id></citation></ref>
<ref id="ref169"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Segurado</surname> <given-names>P.</given-names></name> <name><surname>Santos</surname> <given-names>J. M.</given-names></name> <name><surname>Pont</surname> <given-names>D.</given-names></name> <name><surname>Melcher</surname> <given-names>A. H.</given-names></name> <name><surname>Jalon</surname> <given-names>D. G.</given-names></name> <name><surname>Hughes</surname> <given-names>R. M.</given-names></name> <etal/></person-group>. (<year>2011</year>). <article-title>Estimating species tolerance to human perturbation: expert judgment versus empirical approaches</article-title>. <source>Ecol. Indic.</source> <volume>11</volume>, <fpage>1623</fpage>&#x2013;<lpage>1635</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2011.04.006</pub-id></citation></ref>
<ref id="ref170"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sekadende</surname> <given-names>B. C.</given-names></name> <name><surname>Michael</surname> <given-names>A.</given-names></name> <name><surname>Painter</surname> <given-names>S. C.</given-names></name> <name><surname>Shayo</surname> <given-names>S.</given-names></name> <name><surname>Noyon</surname> <given-names>M.</given-names></name> <name><surname>Kyewalyanga</surname> <given-names>M. S.</given-names></name></person-group> (<year>2021</year>). <article-title>Spatial variation in the phytoplankton community of the Pemba Channel, Tanzania, during the south-east monsoon</article-title>. <source>Ocean Coast. Manag.</source> <volume>212</volume>:<fpage>105799</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ocecoaman.2021.105799</pub-id></citation></ref>
<ref id="ref171"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Sendzimir</surname> <given-names>J.</given-names></name> <name><surname>Schmutz</surname> <given-names>S.</given-names></name></person-group> (<year>2018</year>). &#x201C;<article-title>Challenges in riverine ecosystem management</article-title>&#x201D; in <source>Riverine ecosystem management</source>. eds. <person-group person-group-type="editor"><name><surname>Schmutz</surname> <given-names>S.</given-names></name> <name><surname>Sendzimir</surname> <given-names>J.</given-names></name></person-group>, (<publisher-name>Switzerland: Springer International Publishing</publisher-name>), <fpage>1</fpage>&#x2013;<lpage>16</lpage>.</citation></ref>
<ref id="ref172"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sila</surname> <given-names>O. N. A.</given-names></name></person-group> (<year>2019</year>). <article-title>Physico-chemical and bacteriological quality of water sources in rural settings, a case study of Kenya, Africa</article-title>. <source>Sci. African</source> <volume>2</volume>:<fpage>00018</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.sciaf.2018.e00018</pub-id></citation></ref>
<ref id="ref173"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Singara Charya</surname> <given-names>M. A.</given-names></name></person-group> (<year>2015</year>). <article-title>Fungi: an overview</article-title>. <source>Plant Biol. Biotechnol.</source> <volume>1</volume>, <fpage>197</fpage>&#x2013;<lpage>215</lpage>. doi: <pub-id pub-id-type="doi">10.1007/978-81-322-2286-6-7</pub-id></citation></ref>
<ref id="ref174"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Sokile</surname> <given-names>C. S.</given-names></name> <name><surname>Mwaruvanda</surname> <given-names>W.</given-names></name> <name><surname>Van Koppen</surname> <given-names>B.</given-names></name></person-group> (<year>2005</year>). <source>Integrated water resource management in Tanzania: interface between formal and informal institutions</source>. African Water Laws: Plural Legislative Frameworks for Rural Water Management in Africa, ohannesburg, South Africa. 26&#x2013;28.</citation></ref>
<ref id="ref175"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Stevenson</surname> <given-names>R. J.</given-names></name> <name><surname>Pan</surname> <given-names>Y.</given-names></name> <name><surname>Vandam</surname> <given-names>H.</given-names></name></person-group> (<year>2010</year>). &#x201C;<article-title>Assessing environmental conditions in rivers and streams with diatoms</article-title>&#x201D; in <source>The diatoms: Applications for the environmental and earth sciences</source>, (<publisher-name>England, UK: Cambridge University Press</publisher-name>).</citation></ref>
<ref id="ref176"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sumudumali</surname> <given-names>R. G. I.</given-names></name> <name><surname>Jayawardana</surname> <given-names>J. M. C. K.</given-names></name></person-group> (<year>2021</year>). <article-title>A review of biological monitoring of aquatic ecosystems approaches: with special reference to macroinvertebrates and pesticide pollution</article-title>. <source>Environ. Manag.</source> <volume>67</volume>, <fpage>263</fpage>&#x2013;<lpage>276</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s00267-020-01423-0</pub-id>, PMID: <pub-id pub-id-type="pmid">33462679</pub-id></citation></ref>
<ref id="ref177"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Syberg-Olsen</surname> <given-names>M. J.</given-names></name> <name><surname>Irwin</surname> <given-names>N. A.</given-names></name> <name><surname>Vannini</surname> <given-names>C.</given-names></name> <name><surname>Erra</surname> <given-names>F.</given-names></name> <name><surname>Di Giuseppe</surname> <given-names>G.</given-names></name> <name><surname>Boscaro</surname> <given-names>V.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Biogeography and character evolution of the ciliate genus Euplotes (Spirotrichea, Euplotia), with description of <italic>Euplotes curdsi</italic> sp. nov</article-title>. <source>PLoS One</source> <volume>11</volume>, <volume>11</volume>:<fpage>e0165442</fpage>. doi: <pub-id pub-id-type="doi">10.1371/journal.pone.0165442</pub-id>, PMID: <pub-id pub-id-type="pmid">27828996</pub-id></citation></ref>
<ref id="ref178"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tampo</surname> <given-names>L.</given-names></name> <name><surname>Lazar</surname> <given-names>I. M.</given-names></name> <name><surname>Kabor&#x00E9;</surname> <given-names>I.</given-names></name> <name><surname>Oueda</surname> <given-names>A.</given-names></name> <name><surname>Akpataku</surname> <given-names>K. V.</given-names></name> <name><surname>Djaneye-Boundjou</surname> <given-names>G.</given-names></name> <etal/></person-group>. (<year>2020</year>). <article-title>A multimetric index for assessment of aquatic ecosystem health based on macroinvertebrates for the Zio River basin in Togo</article-title>. <source>Limnologica</source> <volume>83</volume>:<fpage>125783</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.limno.2020.125783</pub-id></citation></ref>
<ref id="ref179"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Terry</surname> <given-names>A.</given-names></name> <name><surname>McLaughlin</surname> <given-names>O.</given-names></name> <name><surname>Kazooba</surname> <given-names>F.</given-names></name></person-group> (<year>2015</year>). <article-title>Improving the effectiveness of Ugandan water user committees</article-title>. <source>Dev. Pract.</source> <volume>25</volume>, <fpage>715</fpage>&#x2013;<lpage>727</lpage>. doi: <pub-id pub-id-type="doi">10.1080/09614524.2015.1046421</pub-id></citation></ref>
<ref id="ref180"><citation citation-type="other"><person-group person-group-type="author"><collab id="coll7">The Water Act</collab></person-group> (<year>2002</year>). Government of Kenya, Ministry of Water and Irrigation. Available at: <ext-link xlink:href="http://kenyalaw.org/kl/fileadmin/pdfdownloads/RepealedStatutes/WaterAct_Cap372_.pdf" ext-link-type="uri">http://kenyalaw.org/kl/fileadmin/pdfdownloads/RepealedStatutes/WaterAct_Cap372_.pdf</ext-link> (Accessed September 4, 2023)</citation></ref>
<ref id="ref181"><citation citation-type="other"><person-group person-group-type="author"><collab id="coll8">The Water Act</collab></person-group> (<year>2016</year>). Water Services Regulatory Board. Available at: <ext-link xlink:href="https://wasreb.go.ke/the-water-act-2016" ext-link-type="uri">https://wasreb.go.ke/the-water-act-2016</ext-link> (Accessed November 13, 2023)</citation></ref>
<ref id="ref182"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tirjakova</surname> <given-names>E.</given-names></name> <name><surname>Vdacny</surname> <given-names>P.</given-names></name></person-group> (<year>2013</year>). <article-title>Analysis and evolution of water quality of the upper V&#x00E1;h River (northern Slovakia) by long-term changes in the community structure of ciliates (Protista: Ciliophora)</article-title>. <source>Biologia</source> <volume>68</volume>, <fpage>667</fpage>&#x2013;<lpage>678</lpage>. doi: <pub-id pub-id-type="doi">10.2478/s11756-013-0211-5</pub-id></citation></ref>
<ref id="ref183"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tomas</surname> <given-names>D.</given-names></name> <name><surname>Curlin</surname> <given-names>M.</given-names></name> <name><surname>Maric</surname> <given-names>A. S.</given-names></name></person-group> (<year>2017</year>). <article-title>Assessing the surface water status in Pannonian ecoregion by the water quality index model</article-title>. <source>Ecol. Indic.</source> <volume>79</volume>, <fpage>182</fpage>&#x2013;<lpage>190</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2017.04.033</pub-id></citation></ref>
<ref id="ref184"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Triest</surname> <given-names>L.</given-names></name> <name><surname>Lung'ayia</surname> <given-names>H.</given-names></name> <name><surname>Ndiritu</surname> <given-names>G.</given-names></name> <name><surname>Beyene</surname> <given-names>A.</given-names></name></person-group> (<year>2012</year>). <article-title>Epilithic diatoms as indicators in tropical African rivers (Lake Victoria catchment)</article-title>. <source>Hydrobiologia</source> <volume>695</volume>, <fpage>343</fpage>&#x2013;<lpage>360</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10750-012-1201-2</pub-id></citation></ref>
<ref id="ref185"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tumusiime</surname> <given-names>J.</given-names></name> <name><surname>Tolo</surname> <given-names>C. U.</given-names></name> <name><surname>Dusabe</surname> <given-names>M. C.</given-names></name> <name><surname>Albrecht</surname> <given-names>C.</given-names></name></person-group> (<year>2019</year>). <article-title>Reliability of the Tanzania river scoring system (TARISS) macroinvertebrate index of water quality: a case study of the river Mpanga system, Uganda</article-title>. <source>J. Freshw. Ecol.</source> <volume>34</volume>, <fpage>541</fpage>&#x2013;<lpage>557</lpage>. doi: <pub-id pub-id-type="doi">10.1080/02705060.2019.1631895</pub-id></citation></ref>
<ref id="ref186"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Turibamwe</surname> <given-names>E.</given-names></name> <name><surname>Wangalwa</surname> <given-names>R.</given-names></name></person-group> (<year>2020</year>). <article-title>A comparative study of two biological monitoring systems in assessing water quality: a case of river Birira, Sheema district, Uganda</article-title>. <source>Water Conserv. Manag.</source> <volume>4</volume>, <fpage>07</fpage>&#x2013;<lpage>14</lpage>. doi: <pub-id pub-id-type="doi">10.26480/wcm.01.2020.07.14</pub-id></citation></ref>
<ref id="ref187"><citation citation-type="other"><person-group person-group-type="author"><collab id="coll9">Uganda Law Reform Commission</collab></person-group> (<year>2000</year>). Uganda, water act cap. 152, Laws of Uganda.</citation></ref>
<ref id="ref188"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Ukomadu</surname> <given-names>N. M. I.</given-names></name></person-group> (<year>2012</year>). Host associations and pollution responses of ciliate epibionts of macroinvertebrates in the six rivers in the Western Cape Province of South Africa. Master's thesis, University of Cape Town.</citation></ref>
<ref id="ref189"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Urbani&#x010D;</surname> <given-names>G.</given-names></name> <name><surname>Mihaljevi&#x0107;</surname> <given-names>Z.</given-names></name> <name><surname>Petkovska</surname> <given-names>V.</given-names></name> <name><surname>Pavlin Urbani&#x010D;</surname> <given-names>M.</given-names></name></person-group> (<year>2020</year>). <article-title>Disentangling the effects of multiple stressors on large rivers using benthic invertebrates&#x2014;a study of southeastern European large rivers with implications for management</article-title>. <source>Water</source> <volume>12</volume>:<fpage>621</fpage>. doi: <pub-id pub-id-type="doi">10.3390/w12030621</pub-id></citation></ref>
<ref id="ref191"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Vermaat</surname> <given-names>J. E.</given-names></name></person-group> (<year>2005</year>). &#x201C;<article-title>Periphyton dynamics and influencing factors</article-title>&#x201D; in <source>Periphyton: Ecology, exploitation and management</source>, (<publisher-name>England, UK: CABI Publishing</publisher-name>), <fpage>35</fpage>&#x2013;<lpage>49</lpage>.</citation></ref>
<ref id="ref192"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wanderi</surname> <given-names>E. W.</given-names></name> <name><surname>Gettel</surname> <given-names>G. M.</given-names></name> <name><surname>Singer</surname> <given-names>G. A.</given-names></name> <name><surname>Masese</surname> <given-names>F. O.</given-names></name></person-group> (<year>2022</year>). <article-title>Drivers of water quality in Afromontane-savanna rivers</article-title>. <source>Front. Environ. Sci.</source> <volume>10</volume>:<fpage>972153</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fenvs.2022.972153</pub-id></citation></ref>
<ref id="ref193"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>X. N.</given-names></name> <name><surname>Ding</surname> <given-names>H. Y.</given-names></name> <name><surname>He</surname> <given-names>X. G.</given-names></name> <name><surname>Dai</surname> <given-names>Y.</given-names></name> <name><surname>Zhang</surname> <given-names>Y.</given-names></name> <name><surname>Ding</surname> <given-names>S.</given-names></name></person-group> (<year>2018</year>). <article-title>Assessing fish species tolerance in the Huntai River basin, China: biological traits versus weighted averaging approaches</article-title>. <source>Water</source> <volume>10</volume>:<fpage>1843</fpage>. doi: <pub-id pub-id-type="doi">10.3390/w10121843</pub-id></citation></ref>
<ref id="ref194"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Warnasuriya</surname> <given-names>S. D.</given-names></name> <name><surname>Udayanga</surname> <given-names>D.</given-names></name> <name><surname>Manamgoda</surname> <given-names>D. S.</given-names></name> <name><surname>Biles</surname> <given-names>C.</given-names></name></person-group> (<year>2023</year>). <article-title>Fungi as environmental bioindicators</article-title>. <source>Sci. Total Environ.</source> <volume>892</volume>:<fpage>164583</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.scitotenv.2023.164583</pub-id></citation></ref>
<ref id="ref195"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Waswala</surname> <given-names>B. O.</given-names></name> <name><surname>Otieno</surname> <given-names>O. N.</given-names></name> <name><surname>Buoga</surname> <given-names>J.</given-names></name></person-group> (<year>2019</year>). <article-title>Youth engagement for environmental education and sustainable lifestyles</article-title>. <source>Cult. Environ.</source>, 1, <fpage>305</fpage>&#x2013;<lpage>317</lpage>. doi: <pub-id pub-id-type="doi">10.1163/9789004396685_019</pub-id></citation></ref>
<ref id="ref196"><citation citation-type="book"><person-group person-group-type="author"><collab id="coll10">Water Aid</collab></person-group> (<year>2013</year>). <source>Strengthening WASH services and community resilience through community based water resource management</source>. <publisher-loc>Burkino Faso</publisher-loc>: <publisher-name>WaterAid</publisher-name>.</citation></ref>
<ref id="ref197"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Watson</surname> <given-names>M.</given-names></name> <name><surname>Dallas</surname> <given-names>H.</given-names></name></person-group> (<year>2013</year>). <article-title>Bioassessment in ephemeral rivers: constraints and challenges in applying macroinvertebrate sampling protocols</article-title>. <source>Afr. J. Aquatic Sci.</source> <volume>38</volume>, <fpage>35</fpage>&#x2013;<lpage>51</lpage>. doi: <pub-id pub-id-type="doi">10.2989/16085914.2012.742419</pub-id></citation></ref>
<ref id="ref198"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Waya</surname> <given-names>R. K.</given-names></name> <name><surname>Limbu</surname> <given-names>S. M.</given-names></name> <name><surname>Ngupula</surname> <given-names>G. W.</given-names></name> <name><surname>Mwita</surname> <given-names>C. J.</given-names></name> <name><surname>Mgaya</surname> <given-names>Y. D.</given-names></name></person-group> (<year>2014</year>). <article-title>Spatial patterns of zooplankton distribution and abundance in relation to phytoplankton, fish catch and some water quality parameters at Shirati Bay, Lake Victoria-Tanzania</article-title>. <source>Tanzania J. Sci.</source> <volume>40</volume>, <fpage>20</fpage>&#x2013;<lpage>32</lpage>.</citation></ref>
<ref id="ref200"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wen</surname> <given-names>Y.</given-names></name> <name><surname>Schoups</surname> <given-names>G.</given-names></name> <name><surname>Van De Giesen</surname> <given-names>N.</given-names></name></person-group> (<year>2017</year>). <article-title>Organic pollution of rivers: combined threats of urbanization, livestock farming and global climate change</article-title>. <source>Sci. Rep.</source> <volume>7</volume>:<fpage>43289</fpage>. doi: <pub-id pub-id-type="doi">10.1038/srep43289</pub-id>, PMID: <pub-id pub-id-type="pmid">28230079</pub-id></citation></ref>
<ref id="ref201"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Whitelaw</surname> <given-names>G.</given-names></name> <name><surname>Vaughan</surname> <given-names>H.</given-names></name> <name><surname>Craig</surname> <given-names>B.</given-names></name> <name><surname>Atkinson</surname> <given-names>D.</given-names></name></person-group> (<year>2003</year>). <article-title>Establishing the Canadian community monitoring network</article-title>. <source>Environ. Monit. Assess.</source> <volume>88</volume>, <fpage>409</fpage>&#x2013;<lpage>418</lpage>. doi: <pub-id pub-id-type="doi">10.1023/A:1025545813057</pub-id>, PMID: <pub-id pub-id-type="pmid">14570426</pub-id></citation></ref>
<ref id="ref202"><citation citation-type="other"><person-group person-group-type="author"><collab id="coll11">World Health Organisation</collab></person-group> (<year>2006</year>). Guidelines for drinking water quality (3rd edition). Available at: <ext-link xlink:href="https://www.who.int/publications/i/item/9241546743" ext-link-type="uri">https://www.who.int/publications/i/item/9241546743</ext-link> (Accessed October 15, 2023)</citation></ref>
<ref id="ref203"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Xie</surname> <given-names>Y.</given-names></name> <name><surname>Wang</surname> <given-names>J.</given-names></name> <name><surname>Wu</surname> <given-names>Y.</given-names></name> <name><surname>Ren</surname> <given-names>C.</given-names></name> <name><surname>Song</surname> <given-names>C.</given-names></name> <name><surname>Yang</surname> <given-names>J.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Using in situ bacterial communities to monitor contaminants in river sediments</article-title>. <source>Environ. Pollut.</source> <volume>212</volume>, <fpage>348</fpage>&#x2013;<lpage>357</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.envpol.2016.01.031</pub-id>, PMID: <pub-id pub-id-type="pmid">26866572</pub-id></citation></ref>
<ref id="ref204"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Xu</surname> <given-names>H.</given-names></name> <name><surname>Yong</surname> <given-names>J.</given-names></name> <name><surname>Xu</surname> <given-names>G.</given-names></name></person-group> (<year>2016</year>). <article-title>Bioassessment of water quality status using a potential bioindicator based on functional groups of planktonic ciliates in marine ecosystems</article-title>. <source>Mar. Pollut. Bull.</source> <volume>110</volume>, <fpage>409</fpage>&#x2013;<lpage>414</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.marpolbul.2016.06.033</pub-id>, PMID: <pub-id pub-id-type="pmid">27318762</pub-id></citation></ref>
<ref id="ref205"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yegon</surname> <given-names>M. J.</given-names></name> <name><surname>Masese</surname> <given-names>F. O.</given-names></name> <name><surname>Sitati</surname> <given-names>A.</given-names></name> <name><surname>Graf</surname> <given-names>W.</given-names></name></person-group> (<year>2021</year>). <article-title>Elevation and land use as drivers of macroinvertebrate functional composition in Afromontane headwater streams</article-title>. <source>Mar. Freshw. Res.</source> <volume>72</volume>, <fpage>1517</fpage>&#x2013;<lpage>1532</lpage>. doi: <pub-id pub-id-type="doi">10.1071/MF21048</pub-id></citation></ref>
<ref id="ref206"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yillia</surname> <given-names>P. T.</given-names></name> <name><surname>Kreuzinger</surname> <given-names>N.</given-names></name> <name><surname>Mathooko</surname> <given-names>J. M.</given-names></name></person-group> (<year>2008</year>). <article-title>The effect of in-stream activities on the Njoro River, Kenya. Part II: microbial water quality</article-title>. <source>Physics Chem. Earth</source> <volume>33</volume>, <fpage>729</fpage>&#x2013;<lpage>737</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.pce.2008.06.040</pub-id></citation></ref>
<ref id="ref207"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zelinka</surname> <given-names>M.</given-names></name></person-group> (<year>1961</year>). <article-title>Zur Prazisierung der biologische Klassifikation der Reinheit fliessender Gewasser</article-title>. <source>Arch. Hydrobiol.</source> 57, <fpage>389</fpage>&#x2013;<lpage>407</lpage>.</citation></ref>
<ref id="ref208"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zeni</surname> <given-names>J. O.</given-names></name> <name><surname>Hoeinghaus</surname> <given-names>D. J.</given-names></name> <name><surname>Casatti</surname> <given-names>L.</given-names></name></person-group> (<year>2017</year>). <article-title>Effects of pasture conversion to sugarcane for biofuel production on stream fish assemblages in tropical agroecosystems</article-title>. <source>Freshw. Biol.</source> <volume>62</volume>, <fpage>2026</fpage>&#x2013;<lpage>2038</lpage>. doi: <pub-id pub-id-type="doi">10.1111/fwb.13047</pub-id></citation></ref>
<ref id="ref209"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhao</surname> <given-names>Y.</given-names></name> <name><surname>Yi</surname> <given-names>Z.</given-names></name> <name><surname>Warren</surname> <given-names>A.</given-names></name> <name><surname>Song</surname> <given-names>W.</given-names></name></person-group> (<year>2018</year>). <article-title>Species delimitation for the molecular taxonomy and ecology of the widely distributed microbial eukaryote genus Euplotes (Alveolata, Cil-iophora)</article-title>. <source>Proceed. R. Soc. B Biol. Sci.</source> <volume>285</volume>, <fpage>2017</fpage>&#x2013;<lpage>2159</lpage>. doi: <pub-id pub-id-type="doi">10.1098/rspb.2017.2159</pub-id>, PMID: <pub-id pub-id-type="pmid">29367393</pub-id></citation></ref>
<ref id="ref210"><citation citation-type="other"><person-group person-group-type="author"><name><surname>Zizinga</surname> <given-names>A.</given-names></name> <name><surname>F&#x00F6;rch</surname> <given-names>G.</given-names></name> <name><surname>Tenywa</surname> <given-names>M.</given-names></name> <name><surname>Abebe</surname> <given-names>M.</given-names></name></person-group> (<year>2015</year>). <source>Integrated water resource Management in Eastern Africa: coping with 'complex' hydrology, Global Water Partnership.</source></citation></ref>
</ref-list>
</back>
</article>