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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Vet. Sci.</journal-id>
<journal-title>Frontiers in Veterinary Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Vet. Sci.</abbrev-journal-title>
<issn pub-type="epub">2297-1769</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fvets.2024.1470781</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Veterinary Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Effect of caffeic acid grafted chitosan loaded quercetin lyophilized powder formulation on avian colibacillosis and tissue distribution</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" equal-contrib="yes"><name><surname>Ren</surname> <given-names>Xin</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="author-notes" rid="fn0001"><sup>&#x2020;</sup></xref>
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<contrib contrib-type="author" equal-contrib="yes"><name><surname>Yuan</surname> <given-names>Sikun</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref><xref ref-type="aff" rid="aff3"><sup>3</sup></xref><xref ref-type="author-notes" rid="fn0001"><sup>&#x2020;</sup></xref>
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<contrib contrib-type="author"><name><surname>Ren</surname> <given-names>Juan</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
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<contrib contrib-type="author"><name><surname>Ma</surname> <given-names>Leying</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
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</contrib>
<contrib contrib-type="author"><name><surname>Liu</surname> <given-names>Juxiang</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
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<contrib contrib-type="author" corresp="yes"><name><surname>Wang</surname> <given-names>Gengnan</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
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<aff id="aff1"><sup>1</sup><institution>College of Veterinary Medicine, Hebei Agricultural University</institution>, <addr-line>Baoding</addr-line>, <country>China</country></aff>
<aff id="aff2"><sup>2</sup><institution>School of Quality and Technical Supervision, Hebei University</institution>, <addr-line>Baoding</addr-line>, <country>China</country></aff>
<aff id="aff3"><sup>3</sup><institution>Baoding Institute for Food and Drug Control</institution>, <addr-line>Baoding</addr-line>, <country>China</country></aff>
<author-notes>
<fn fn-type="edited-by" id="fn0002">
<p>Edited by: Jianzhu Liu, Shandong Agricultural University, China</p>
</fn>
<fn fn-type="edited-by" id="fn0003">
<p>Reviewed by: Guiyan Yang, China Agricultural University, China</p>
<p>Ahmed R. Elbestawy, Menoufia University, Egypt</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Gengnan Wang, <email>wanggengnan@hebau.edu.cn</email></corresp>
<fn fn-type="equal" id="fn0001">
<p><sup>&#x2020;</sup>These authors have contributed equally to this work and share first authorship</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>24</day>
<month>10</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>11</volume>
<elocation-id>1470781</elocation-id>
<history>
<date date-type="received">
<day>26</day>
<month>07</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>18</day>
<month>09</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2024 Ren, Yuan, Ren, Ma, Liu and Wang.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Ren, Yuan, Ren, Ma, Liu and Wang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Quercetin (QR), recognized as a natural antibacterial ingredient, has found widespread application in the poultry industry. This study investigated the bacteriostatic mechanism and evaluated the <italic>in vivo</italic> inhibitory impact of caffeic acid-grafted chitosan self-assembled micelles loaded quercetin (CA-g-CS/QR) on avian <italic>Escherichia coli</italic> (<italic>E. coli</italic>). The findings indicate that the bactericidal mechanism of CA-g-CS/QR exhibits enhanced efficacy compared to QR alone, disrupting bacterial cell walls, disassembling biofilm structures, and impeding essential components necessary for bacterial growth. Following an avian <italic>E. coli</italic> attack in broilers, CA-g-CS/QR demonstrated the capacity to enhance the population of beneficial bacteria while concurrently decreasing harmful bacteria within the intestinal tract. Moreover, within 3 days of oral administration of CA-g-CS/QR, a significant decrease in <italic>Escherichia</italic> spp. count was evident, resulting in the restoration of broilers to a healthy state. CA-g-CS/QR proved to be a significant and more efficacious solution than QR alone for avian <italic>E. coli</italic> disease. Furthermore, CA-g-CS/QR displayed a broader distribution range and higher concentration within the body. Ten metabolites have been identified in the liver for both QR and CA-g-CS/QR. In conclusion, CA-g-CS/QR has demonstrated a notable capacity to enhance <italic>in vitro</italic> and <italic>in vivo</italic> bacterial inhibitory effects, providing foundation for the clinical application of QR in combating avian <italic>E. coli</italic> infections in broilers.</p>
</abstract>
<abstract abstract-type="graphical">
<title>Graphical abstract</title>
<p>
<graphic xlink:href="fvets-11-1470781gr0001.tif" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</p>
</abstract>
<kwd-group>
<kwd>quercetin</kwd>
<kwd>
<italic>Escherichia coli</italic>
</kwd>
<kwd>mechanism of bacterial antibacterial</kwd>
<kwd>intestinal flora</kwd>
<kwd>tissue distribution</kwd>
</kwd-group>
<contract-num rid="cn1">C2022204090</contract-num>
<contract-num rid="cn2">32002343</contract-num>
<contract-sponsor id="cn1">Hebei Natural Science Foundation</contract-sponsor>
<contract-sponsor id="cn2">Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content></contract-sponsor>
<counts>
<fig-count count="8"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="44"/>
<page-count count="15"/>
<word-count count="8597"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Veterinary Pharmacology and Toxicology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="sec2">
<label>1</label>
<title>Introduction</title>
<p>The intestinal tract plays a vital role in both digestion and immune defense, crucial for the growth and development of organisms. Central to its functionality is the intestinal flora, which maintains a harmonious balance capable of modulating the host&#x2019;s immune system and fortifying defenses against pathogens (<xref ref-type="bibr" rid="ref1 ref2 ref3">1&#x2013;3</xref>). <italic>Escherichia coli</italic> (<italic>E. coli</italic>), a facultative anaerobic microorganism, predominantly affects young animals and birds, thriving in the lower gastrointestinal tract and posing significant threats to health and economic losses in livestock industries (<xref ref-type="bibr" rid="ref4 ref5 ref6 ref7">4&#x2013;7</xref>). The escalating trend of antibiotic resistance among <italic>E. coli</italic> strains underscores the urgent need for alternative strategies in livestock farming to ensure food safety and sustainability.</p>
<p>Quercetin (QR), a widely distributed flavonoid compound in plants, has gained attention for its broad antimicrobial properties, effectively combating various pathogens including <italic>E. coli</italic> (<xref ref-type="bibr" rid="ref8 ref9 ref10">8&#x2013;10</xref>). Its mechanisms of action involve disrupting cell walls, interfering with protein synthesis, and exerting metabolic antagonism, making it a promising candidate against multidrug-resistant bacteria (<xref ref-type="bibr" rid="ref11 ref12 ref13 ref14">11&#x2013;14</xref>). Studies have demonstrated QR&#x2019;s ability to reduce pathogenic bacteria in broilers while promoting beneficial microflora, thus enhancing intestinal health and immunity (<xref ref-type="bibr" rid="ref15">15</xref>).</p>
<p>Chitosan (CS), a natural polymer known for its antimicrobial activity, biodegradability, and biocompatibility, is utilized in food preservation and drug delivery (<xref ref-type="bibr" rid="ref16 ref17 ref18">16&#x2013;18</xref>). Although its efficacy can be limited by solubility issues, chemical modifications and composite strategies enhance its antimicrobial potential against a spectrum of bacteria, including <italic>E. coli</italic> (<xref ref-type="bibr" rid="ref19">19</xref>, <xref ref-type="bibr" rid="ref20">20</xref>). Caffeic acid (CA), a natural fungicide, enhances antimicrobial activity by disrupting bacterial cell structures, which is explored for developing new compounds with therapeutic applications (<xref ref-type="bibr" rid="ref21 ref22 ref23">21&#x2013;23</xref>).</p>
<p>This study investigates caffeic acid-grafted chitosan self-assembled micelles (CA-g-CS) as a carrier for QR, aiming to enhance its solubility and stability under alkaline conditions. Preliminary experiments demonstrate that CA-g-CS/QR improves QR&#x2019;s bioavailability by 1.67 times compared to the unmodified drug, significantly enhancing its antibacterial efficacy against <italic>E. coli</italic> with reduced MIC and MBC values (<xref ref-type="bibr" rid="ref24">24</xref>). This research further explores the antibacterial mechanisms of CA-g-CS/QR in white-feathered broilers challenged with avian <italic>E. coli</italic>, assessing its impact on intestinal health and potential clinical applications. These findings lay the groundwork for leveraging QR and CA-g-CS/QR formulations in combating avian <italic>E. coli</italic> infections in broilers, addressing critical concerns in livestock health and food safety.</p>
</sec>
<sec sec-type="materials|methods" id="sec3">
<label>2</label>
<title>Materials and methods</title>
<sec id="sec4">
<label>2.1</label>
<title>Materials and reagents</title>
<p>Quercetin (&#x2265;97%), kaempferol (&#x2265;98%), caffeic acid (&#x2265;98%), chitosan (deacetylation degree of 90%), the above reagents were purchased from Yuanye Biologicals (Shanghai, China), <italic>Escherichia coli</italic>, chromatography grade acetonitrile was purchased from Merck (Germany), and the kits used in the experiments were purchased from Nanjing Jiancheng Company (China), and the experiments were conducted using ultrapure water prepared for the laboratory.</p>
</sec>
<sec id="sec5">
<label>2.2</label>
<title>Experiment animals</title>
<p>The animal experiments were reviewed and approved by the Institutional Animal Ethics Committee of Hebei Agricultural University, with the approval number 2022026, and carried out according to the Guidelines for the Management and Use of Laboratory Animals in China. In this study, 40 healthy 30-day-old white feather broilers were used (Baoding, China). All of the broilers were fed from 1&#x2009;day of age with adequate basic diet and water, and the basic diet formula met or exceeded the nutritional requirements of the broilers. Before the experiment, broilers were randomly divided into 5 treatment groups.</p>
</sec>
<sec id="sec6">
<label>2.3</label>
<title>Preparation of CA-g-CS/QR</title>
<p>Initially, 0.5&#x2009;g of CS was fully dissolved in a 50&#x2009;mL solution of 1% acetic acid. Following this, 1.32&#x2009;g of ascorbic acid and 1&#x2009;g of CA were introduced. The solution&#x2019;s pH was meticulously adjusted to 6.0, and a slow nitrogen flow was maintained in the reactor for 60&#x2009;min. Subsequently, a 10&#x2009;mol/L hydrogen peroxide solution was introduced to initiate the reaction. The reaction transpired under a continuous nitrogen flow for a duration of 16&#x2009;h. The resultant solution underwent dialysis in ultrapure water for 72&#x2009;h, followed by dehydration in a freeze dryer (<xref ref-type="bibr" rid="ref25">25</xref>).</p>
<p>A CA-g-CS solution with a specific concentration was prepared following the aforementioned procedures. A specific concentration of CA-g-CS solution was prepared according to the above procedure. At the same time, QR was dissolved in methanol and the QR solution was gradually added to the CA-g-CS solution at room temperature with vigorous stirring (1&#x2009;mg QR per 100&#x2009;&#x03BC;L methanol solution). The mixture was stirred overnight to promote complete evaporation of methanol. The mixture was stirred overnight to facilitate complete evaporation of methanol.</p>
<p>The CA-g-CS/QR solution was successfully synthesized in our laboratory, and extensive experiments have substantiated the enhanced formulation properties conferred by CA-g-CS on QR (<xref ref-type="bibr" rid="ref24">24</xref>). The CA-g-CS/QR solution, once prepared, underwent a freeze-drying process to yield lyophilized powder. Subsequently, the resulting powder was subjected to observation under a scanning electron microscope. Morphological features were meticulously examined and compared with those of CA-g-CS and QR, aiming to ascertain the success of the formulation preparation.</p>
</sec>
<sec id="sec7">
<label>2.4</label>
<title>Antibacterial mechanism</title>
<sec id="sec8">
<label>2.4.1</label>
<title>Determination of anbacterial curve</title>
<p>The antibacterial curve of avian <italic>E. coli</italic> was determined by UV spectrophotometry. The inoculum of 5% (v/v) was inoculated in liquid nutrient broth medium; the same concentration of QR, CA-g-CS/QR, CA-g-CS solution was added as the experimental group, and sterile water was used as the control group. Three parallels of each group were set up, incubated in a shaking bed at 37&#x00B0;C, and the samples were taken at intervals of 2&#x2009;h. The absorbance at 600&#x2009;nm was measured continuously for 24&#x2009;h. The bacteriostatic curve of avian <italic>E. coli</italic> was plotted with the incubation time as the horizontal coordinate and the measured absorbance value as the vertical coordinate (<xref ref-type="bibr" rid="ref26">26</xref>, <xref ref-type="bibr" rid="ref27">27</xref>).</p>
</sec>
<sec id="sec9">
<label>2.4.2</label>
<title>Determination of alkaline phosphatase content</title>
<p>QR, CA-g-CS/QR, CA-g-CS solution was added to the bacterial suspension, the final concentration of the drug solution was 9&#x2009;mg/mL, and sterile water was used instead of the drug solution as the control group, the samples were taken at regular intervals of 2&#x2009;h. After centrifugation at 4,000&#x2009;r/min for 10&#x2009;min, the supernatant was taken to determine its content by alkaline phosphatase (AKP) kit method, and the change of AKP was detected with the extension of time. Each experimental group was equipped with three parallels.</p>
</sec>
<sec id="sec10">
<label>2.4.3</label>
<title>Determination of nucleic acid and protein leakage</title>
<p>The bacterial suspension was activated and incubated to logarithmic phase, and QR, CA-g-CS/QR, and CA-g-CS solutions were added to make the final concentration of the drug solution 9&#x2009;mg/mL, and sterile water was set as the control. At the incubation time of 0, 2, 4, 6, 8, 10, and 12&#x2009;h, samples were centrifuged and the supernatant was taken. The absorbance values were measured at 260&#x2009;nm and 280&#x2009;nm with a UV spectrophotometer. This value was used to reflect the content of nucleic acid substances and protein substances in the supernatant, with three parallel experiments in each group.</p>
</sec>
<sec id="sec11">
<label>2.4.4</label>
<title>Crystalline violet staining test</title>
<p>The bacterial suspension was prepared and the experimental group (same concentration of QR, CA-g-CS/QR, CA-g-CS solution) and control group (sterile water) were set up, and the volume of bacterial solution was 1:1 with the volume of drug solution, which was cultured at 37&#x00B0;C in a constant temperature shaker. The suspension was incubated for 24&#x2009;h, centrifuged at low temperature for 10&#x2009;min at 6,000&#x2009;r/min, washed three times with PBS, mixed with crystal violet solution, incubated for 15&#x2009;min at room temperature and protected from light, and centrifuged to take the supernatant, and the OD590 value was determined. Each group of experiments was equipped with three parallels.</p>
</sec>
<sec id="sec12">
<label>2.4.5</label>
<title>Determination of ATP</title>
<p>The bacterial suspension which was cultured to logarithmic phase after activation was added with QR, CA-g-CS/QR, CA-g-CS solution, so that the final concentration of the drug solution was 9&#x2009;mg/mL, and incubated in shaker at 37&#x00B0;C for 4&#x2009;h. The bacterial suspension was centrifuged at 6,000&#x2009;r/min for 10&#x2009;min, washed three times with PBS and resuspended, and the resuspended bacterial body was broken by low temperature ultrasonication, and then centrifuged at 8,000&#x2009;r/min for 10&#x2009;min, and the cell residues were discarded, and the supernatants were taken to determine the ATP content with an ATP content test kit with 3 parallels in each group.</p>
</sec>
<sec id="sec13">
<label>2.4.6</label>
<title>Determination of half antibacterial concentration (EC50)</title>
<p>The prepared bacterial suspension was inoculated into the liquid medium at an inoculum of 5%, and then different concentrations of QR, CA-g-CS/QR and CA-g-CS were added to the liquid medium, so that the final concentrations of each of them were 0, 2, 4, 9, 18, 36, and 72&#x2009;mg/mL, respectively, and then the bacteria were cultured at a constant temperature of 37&#x00B0;C for 24&#x2009;h. The absorbance values were measured at 600&#x2009;nm by UV spectrophotometer, and the antibacterial rates were calculated. After 24&#x2009;h, the absorbance values were measured at 600&#x2009;nm by UV spectrophotometer and the antibacterial rates were calculated. The bacterial growth antibacterial rate was converted into the antibacterial probability value and used as the vertical coordinate, and the concentration of the drug solution was converted into the logarithmic value and used as the horizontal coordinate. Based on the linear regression relationship between the bacterial growth antibacterial probability value (y) and the logarithmic value of the concentration of the drug solution (x), the regression equation of the virulence was solved, and the EC50 was calculated.</p>
<p>
<inline-formula>
<mml:math id="M1">
<mml:mi mathvariant="normal">Antibacterial rate</mml:mi>
<mml:mspace width="thickmathspace"/>
<mml:mfenced open="(" close=")">
<mml:mo>%</mml:mo>
</mml:mfenced>
<mml:mo>=</mml:mo>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi mathvariant="normal">O</mml:mi>
<mml:mi mathvariant="normal">D</mml:mi>
</mml:mrow>
<mml:mi mathvariant="normal">control</mml:mi>
</mml:msub>
<mml:mo>&#x2013;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi mathvariant="normal">O</mml:mi>
<mml:mi mathvariant="normal">D</mml:mi>
</mml:mrow>
<mml:mi mathvariant="normal">treatment</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mfenced>
<mml:mo stretchy="true">/</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi mathvariant="normal">O</mml:mi>
<mml:mi mathvariant="normal">D</mml:mi>
</mml:mrow>
<mml:mi mathvariant="normal">control</mml:mi>
</mml:msub>
<mml:mo>&#x00D7;</mml:mo>
<mml:mn>100</mml:mn>
<mml:mo>%</mml:mo>
</mml:math>
</inline-formula>
</p>
<p>Note: OD <sub>control</sub> refers to the absorbance value at 600&#x2009;nm of the sterile water treatment group, and OD <sub>treatment</sub> indicates the absorbance value at 600&#x2009;nm of the experimental group with the addition of different bacteriostatic substances of QR, CA-g-CS/QR and CA-g-CS.</p>
</sec>
</sec>
<sec id="sec14">
<label>2.5</label>
<title><italic>In vivo</italic> antibacterial experiment</title>
<sec id="sec15">
<label>2.5.1</label>
<title>Experimental design</title>
<p>Forty healthy white-feathered broilers with similar body mass at 30&#x2009;days of age were selected and randomly divided into five groups with eight replicates in each group, namely, the blank group (BK group), the control group (CON group), the model group (MOD group), the QR group and the CA-g-CS/QR group. Except for the BK group, the other four groups were treated with 1.0&#x2009;&#x00D7;&#x2009;10<sup>8</sup>&#x2009;cfu/mL <italic>E. coli</italic> of chicken origin at 1&#x2009;mL/broiler to establish the morbidity model, and the morbidity of the broilers was observed to confirm the success of modeling. The QR group and the CA-g-CS/QR group received the corresponding solution orally twice daily for three consecutive days at a dose of 18&#x2009;mg/kg, while the control group was left untreated and the test period was the same as that of the experimental group.</p>
</sec>
<sec id="sec16">
<label>2.5.2</label>
<title>Sample collection</title>
<p>At the end of the experiment, the white-feathered broilers were dissected. The cecum was ligated with a pre-sterilized fine thread, cut off, and the contents of the cecum were taken in a sterile 5&#x2009;mL centrifuge tube in a biological ultra-clean bench and stored in a refrigerator at &#x2212;80&#x00B0;C for intestinal microflora analysis.</p>
</sec>
<sec id="sec17">
<label>2.5.3</label>
<title>Analysis of the intestinal microflora</title>
<p>Small fragment libraries were constructed according to the characteristics of the amplified regions, and the libraries were subjected to double-end sequencing based on the illumina NovaSeq sequencing platform. After Reads splicing and filtering, OTUs clustering or ASVs noise reduction, the obtained valid data were subsequently subjected to species annotation as well as abundance analysis to reveal the species composition of the samples; and further <italic>&#x03B1;</italic>-diversity and <italic>&#x03B2;</italic>-diversity analyses could be used to uncover the differences in the community structure among the samples. Up-sequencing was performed using NovaSeq 6000 (Illumina, San Diego, United States).</p>
</sec>
</sec>
<sec id="sec18">
<label>2.6</label>
<title>Tissue distribution</title>
<sec id="sec19">
<label>2.6.1</label>
<title>Method creation</title>
<p>Waters TQD LC&#x2013;MS (Waters, United States). Chromatographic conditions: Waters Acquity UPLC Shield RP18 column (100&#x00D7; 2.1&#x2009;mm, 1.7&#x2009;&#x03BC;m, Waters). The mobile phase was acidified acetonitrile-0.2% formic acid in water (40:60, v/v) at a flow rate of 0.3&#x2009;mL/min.</p>
<p>Mass spectrometry conditions: Ion source: ESI; Detection mode: positive ion mode; Signal acquisition: multiple reaction detection (MRM); Cone hole voltage: 45&#x2009;V; Collision energy: 25&#x2009;V; Ion pairs: m/z303&#x2009;&#x2192;&#x2009;229.1 and m/z287&#x2009;&#x2192;&#x2009;164.9 (internal standard).</p>
</sec>
<sec id="sec20">
<label>2.6.2</label>
<title>Preparation of calibration standards</title>
<p>The standard stock solutions of QR and kaempferol (KF) were prepared with acidified acetonitrile/0.2% formic acid (2:3, v/v). A series of working standard solutions of QR at different concentrations (100.0&#x2013;10000.0&#x2009;ng/mL) were prepared by diluting the stock solution. A calibration standard solution was made by mixing 200&#x2009;&#x03BC;L of blank tissue homogenate with 20&#x2009;&#x03BC;L of the appropriate QR working solution, which was then used to make a series of standard solutions at concentrations of 10.0, 20.0, 50.0, 100.0, 200.0, 500.0&#x2009;ng/mL, and 1,000&#x2009;ng/mL.</p>
</sec>
<sec id="sec21">
<label>2.6.3</label>
<title>Tissue sample processing</title>
<p>Take 500&#x2009;mg of each tissue sample, add 500&#x2009;&#x03BC;L of saline and mix well for homogenization, centrifuge at 12,000&#x2009;r/min for 10&#x2009;min. Take 200&#x2009;&#x03BC;L aliquot of tissue homogenate, add 20&#x2009;&#x03BC;L of 40&#x2009;&#x03BC;g/mL of KF internal standard, 100&#x2009;&#x03BC;L of 25% HCL and 2&#x2009;mL of ethyl acetate in sequence, vortex for 2&#x2009;min. The mixture was centrifuged at 8,000&#x2009;rpm for 5&#x2009;min and the supernatant was transferred to a centrifuge tube and concentrated to dryness under nitrogen. The analytes were dissolved in 200&#x2009;&#x03BC;L of acidified acetonitrile/0.2% formic acid in water (2:3, v/v).</p>
</sec>
<sec id="sec22">
<label>2.6.4</label>
<title>Method validation</title>
<p>A series of QR standard solutions with different concentrations were prepared by dilution. 200&#x2009;&#x03BC;L of blank tissue homogenate was taken and 20&#x2009;&#x03BC;L of QR standard solution was added, and treated according to the method under Section 2.6.3. The regression equation of the standard curve of each tissue homogenate was established with the concentration of the substance to be measured in each tissue as the horizontal coordinate and the ratio of the peak area of the substance to be measured to that of the internal standard as the vertical coordinate.</p>
<p>Aspirate 200&#x2009;&#x03BC;L of each tissue blank homogenate, prepare low, medium and high concentration quality control samples, and analyze the samples according to the method under Section 2.6.3 to obtain the peak area of each component A1. Take another 200&#x2009;&#x03BC;L of blank tissue homogenate, and process it according to the method under Section 2.6.3, and the residue will be re-solubilized with the standard solutions of low, medium and high concentration, and analyzed by the samples to obtain the peak areas of each component A2. The low, medium and high standard solutions were injected and analyzed to obtain the peak area A3 of each component. Six copies of each sample were prepared in parallel. The ratio of A1&#x2013;A3 was calculated as the extraction recovery, and the ratio of A2&#x2013;A3 was calculated as the matrix effect.</p>
<p>Precision and accuracy were assessed by using standards (<italic>n</italic>&#x2009;=&#x2009;6) at low, medium, and high level concentrations for each organization. Intraday precision and accuracy were calculated based on the results of samples analyzed on the same day; interday precision and accuracy were calculated for three consecutive days of sampling.</p>
</sec>
<sec id="sec23">
<label>2.6.5</label>
<title>Organizational distribution studies</title>
<p>Heart, liver, spleen, lung, kidney, leg and breast tissues of 6 broilers each from QR group and CA-g-CS/QR group <italic>in vivo</italic> antimicrobial experiments were selected, placed in saline, washed, blotted on filter paper, and divided. Store in the refrigerator at &#x2212;80&#x00B0;C for use.</p>
</sec>
</sec>
<sec id="sec24">
<label>2.7</label>
<title>Identification of QR metabolites <italic>in vivo</italic></title>
<sec id="sec25">
<label>2.7.1</label>
<title>Methods of detection</title>
<p>Q EXACTIVE PLUS UPLC-MS (Thermo Scientific). Chromatographic conditions: Vanquish Flex UPLC, HSS T3 column (2.1&#x002A;100&#x2009;mm, 1.8&#x2009;&#x03BC;m), mobile phase 0.1% formic acid in water (A)-acetonitrile (B), gradient elution, 0&#x2009;~&#x2009;0.5&#x2009;min, 98%A; 0.5&#x2009;~&#x2009;15&#x2009;min, 98%&#x2009;~&#x2009;60%A; 15&#x2009;~&#x2009;18&#x2009;min, 60%&#x2009;~&#x2009;10%A; 18&#x2009;~&#x2009;20&#x2009;min, 10%A; 20&#x2009;~&#x2009;21&#x2009;min, 10%&#x2009;~&#x2009;98%A; 21&#x2009;~&#x2009;24&#x2009;min, 98%A; flow rate 0.3&#x2009;mL/min, column temperature 40&#x00B0;C.</p>
<p>Mass Spectrometry Conditions: Spray Voltage: &#x2212;3.2&#x2009;kV/+3.8&#x2009;kV, Ion Transfer Tube Temperature: 325&#x00B0;C, Atomization Temperature: 350&#x00B0;C, Scanning Mode: fullmass-ddMS2, Scanning Range: 100&#x2013;1,000 for first stage, auto for second stage.</p>
<p>Compound Discoverer software was used to retrieve possible metabolites through its own metabolic pathway.</p>
</sec>
<sec id="sec26">
<label>2.7.2</label>
<title>Metabolite detection</title>
<p>Two groups of white-feathered broilers were dosed with QR and CA-g-CS/QR respectively, and there was a blank group at the same time. After 2&#x2009;h, the livers were taken and placed in saline, washed, blotted on filter paper, and divided. The samples were processed and tested according to the method in 2.6.3.</p>
</sec>
</sec>
</sec>
<sec sec-type="results" id="sec27">
<label>3</label>
<title>Results</title>
<sec id="sec28">
<label>3.1</label>
<title>Scanning electron microscopy morphological observations</title>
<p>The scanning electron microscopy results, as illustrated in <xref ref-type="fig" rid="fig1">Figure 1</xref>: (A) solid CA-g-CS exhibits a lamellar structure with an approximate diameter of 46.9&#x2009;&#x00B1;&#x2009;6.2&#x2009;&#x03BC;m; (B) QR assumes a rod-like crystalline state with a diameter of about 37.3&#x2009;&#x00B1;&#x2009;4.9&#x2009;&#x03BC;m; (C) the lyophilized powder of CA-g-CS/QR presents a smaller flocculent structure, featuring a diameter of around 12.1&#x2009;&#x00B1;&#x2009;3.6&#x2009;&#x03BC;m.</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>CA-g-CS, QR and CA-g-CS/QR scanning electron microscope view. <bold>(A)</bold> Scanning electron microscope view of solid CA-g-CS with a particle size of about 46.9&#x2009;&#x00B1;&#x2009;6.2&#x2009;&#x03BC;m; <bold>(B)</bold> Scanning electron microscope view of QR with a particle size of about 37.3&#x2009;&#x00B1;&#x2009;4.9&#x2009;&#x03BC;m; <bold>(C)</bold> Scanning electron microscope view of solid CA-g-CS/QR with a particle size of about 12.1&#x2009;&#x00B1;&#x2009;3.6&#x2009;&#x03BC;m.</p>
</caption>
<graphic xlink:href="fvets-11-1470781-g001.tif"/>
</fig>
</sec>
<sec id="sec29">
<label>3.2</label>
<title>Antibacterial curves</title>
<p><xref ref-type="fig" rid="fig2">Figure 2A</xref> illustrates the results indicating robust bacterial growth in the control group. Compared to this, both the QR and CA-g-CS groups exhibited reduced OD values, signifying diminished bacterial growth. Remarkably, the OD value change in the CA-g-CS/QR group was minimal.</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>Results of each index of antibacterial mechanism. <bold>(A)</bold> Antibacterial curves of QR, CA-g-CS/QR, CA-g-CS, and control. <bold>(B)</bold> Experimental results of AKP content measurement. <bold>(C)</bold> Experimental results of nucleic acid leakage content measurement. <bold>(D)</bold> Experimental results of protein leakage content measurement. <bold>(E)</bold> Crystalline violet staining results (<italic>n</italic>&#x2009;=&#x2009;3, &#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05, &#x002A;&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.01). <bold>(F)</bold> Experimental results of ATP content determination (<italic>n</italic>&#x2009;=&#x2009;3, &#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05, &#x002A;&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.01).</p>
</caption>
<graphic xlink:href="fvets-11-1470781-g002.tif"/>
</fig>
</sec>
<sec id="sec30">
<label>3.3</label>
<title>Determination of AKP content</title>
<p>As depicted in <xref ref-type="fig" rid="fig2">Figure 2B</xref>, the consistently lower AKP activity in the control group suggests superior growth of pathogenic bacteria with an intact cell wall structure. Both CA-g-CS and QR, as well as the CA-g-CS/QR combination, proved effective in disrupting the integrity of the bacterial cell wall. Notably, the impact of CA-g-CS/QR surpassed that of QR alone, affirming the enhanced effectiveness of the combined formulation. This substantiates the notion that CA-g-CS can augment the bacteriostatic capabilities of QR.</p>
</sec>
<sec id="sec31">
<label>3.4</label>
<title>Determination of nucleic acid and protein leakage levels</title>
<p>In <xref ref-type="fig" rid="fig2">Figure 2C</xref>, the control group showed a progressive rise in nucleic acid leakage due to regular bacterial growth and apoptosis over the incubation period. Conversely, the absorbance value at 260&#x2009;nm notably surged in the CA-g-CS/QR group, indicating considerable cellular content leakage. These observations suggest a probable occurrence of irreversible damage to the cytoplasmic membrane, potentially leading to the loss of essential cellular components such as DNA and RNA, ultimately culminating in cell death.</p>
<p>As depicted in <xref ref-type="fig" rid="fig2">Figure 2D</xref>, over the incubation period, the control group exhibited increased protein content attributed to bacterial growth and concentration elevation. Both the QR and CA-g-CS groups experienced content spillage due to bacterial disruption, whereas the CA-g-CS/QR group displayed a notably swifter decrease in protein content.</p>
</sec>
<sec id="sec32">
<label>3.5</label>
<title>Analysis of crystalline violet staining results</title>
<p>In this study, crystal violet staining served to assess bacterial cell membrane damage, as illustrated in <xref ref-type="fig" rid="fig2">Figure 2E</xref>. CA-g-CS, CA-g-CS/QR, and QR exhibited varying degrees of impact on biofilm integrity. Notably, CA-g-CS/QR induced more severe damage to the biofilm, suggesting that CA-g-CS contributes to enhancing the bacterial inhibitory capability of QR.</p>
</sec>
<sec id="sec33">
<label>3.6</label>
<title>Determination of ATP content</title>
<p>The impact of CA-g-CS, CA-g-CS/QR, and QR on the ATP content of avian <italic>E. coli</italic> (<xref ref-type="fig" rid="fig2">Figure 2F</xref>) suggests an influence on bacterial ATP synthesis or consumption. Our results suggest that the modification with CA-g-CS enhances QR&#x2019;s capacity to impair the bacterial cell membrane, consequently reducing bacterial ATP content.</p>
<p>Based on multiple inhibition mechanism experiments outlined above, it is evident that CA-g-CS/QR disrupts the bacterial cell wall and membrane, resulting in substantial content leakage and ultimately culminating in bacterial death through lysis. This antibacterial mechanism of CA-g-CS/QR is depicted in <xref ref-type="fig" rid="fig3">Figure 3</xref>.</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption>
<p>Diagram of CA-g-CS/QR antibacterial mechanism. CA-g-CS/QR destroys bacterial cell walls and cell membranes and causes the efflux of nucleic acids, proteins and other contents.</p>
</caption>
<graphic xlink:href="fvets-11-1470781-g003.tif"/>
</fig>
</sec>
<sec id="sec34">
<label>3.7</label>
<title>EC50 measurement</title>
<p>The calculated CA-g-CS, CA-g-CS/QR and QR EC50 were 10.23&#x2009;mg/mL, 6.76&#x2009;mg/mL, and 8.71&#x2009;mg/mL, which showed that CA-g-CS, CA-g-CS/QR and QR inhibited avian <italic>E. coli</italic> to different degrees, but avian <italic>E. coli</italic> was more sensitive to CA-g-CS/QR.</p>
</sec>
<sec id="sec35">
<label>3.8</label>
<title>Results of the analysis of the intestinal flora</title>
<p>Throughout the test period, daily observations were made regarding the health status of broilers. Under normal conditions, broilers exhibited columnar spiral conical feces, light gray-green in color, with white urate bands attached to the fecal surface, presenting a soft and fluffy texture. During episodes of diarrhea, the manifestations varied, displaying diluted feces in shades of white, red, or green. Broilers subjected to the modeling of avian <italic>E. coli</italic> infection exhibited signs of depression, huddling, and lying down, accompanied by disheveled feathers. However, among the experimental groups, broilers treated with CA-g-CS/QR demonstrated heightened agility, robust appetite during feeding, assertive food and water intake, maintained smooth feathers, and exhibited increased body weight compared to other groups.</p>
<sec id="sec36">
<label>3.8.1</label>
<title>Quality control of raw sequencing data</title>
<p>Through the quality control of the original data, according to the sequencing of the data obtained by computational processing, the original data is 645737.7, the filtered data is 612307.1, the effective data is 518545.6, the average length is 413.0&#x2009;bp, the average effective rate is 80%, the quality of sequencing data information analysis is reliable.</p>
</sec>
<sec id="sec37">
<label>3.8.2</label>
<title>OTU analysis</title>
<p>As can be seen from <xref ref-type="fig" rid="fig4">Figure 4A</xref>, the BK group contains 1,207 OTUs, the MOD group contains 1,063 OTUs, the CON group contains 1,147 OTUs, the QR group contains 1,210 OTUs, and the CA-g-CS/QR group contains 1,565 OTUs; of which the core OTUs among the three are 363, the unique OTUs of the BK group are 424, the MOD group exclusive OTUs were 339, CON group exclusive OTUs were 379, QR group exclusive OTUs were 462, and CA-g-CS/QR group exclusive OTUs were 773. The test results showed that the number of OTUs decreased in the MOD and CG groups and increased in the QR and CA-g-CS/QR groups compared with that in the BK group, and the number of OTUs increased significantly more in the CA-g-CS/QR group than in the QR group.</p>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption>
<p>Sample OTUs Venn diagram and relative abundance histogram of flora. <bold>(A)</bold> Sample OTUs Venn diagram. <bold>(B)</bold> Histogram of relative abundance of <italic>Escherichia</italic> spp. (&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05, &#x002A;&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.01 vs. MOD group. <sup>#</sup><italic>p</italic>&#x2009;&#x003C;&#x2009;0.05 vs. CON group). <bold>(C)</bold> Relative abundance of dominant flora at the phylum level (&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05, &#x002A;&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.01). <bold>(D)</bold> Relative abundance of dominant flora at the genus level.</p>
</caption>
<graphic xlink:href="fvets-11-1470781-g004.tif"/>
</fig>
</sec>
<sec id="sec38">
<label>3.8.3</label>
<title>Species annotation and analysis</title>
<p>The <italic>Escherichia</italic> spp. changes depicted in <xref ref-type="fig" rid="fig4">Figure 4B</xref> revealed a significant increase in <italic>Escherichia</italic> spp. count in the MOD group compared to BK, affirming the success of the modeling process. Both the QR and CA-g-CS/QR groups displayed decreased <italic>Escherichia</italic> spp. counts compared to the CON group, signifying a certain therapeutic effect against avian <italic>E. coli</italic> infections. Notably, the <italic>Escherichia</italic> spp. count in the CA-g-CS/QR group significantly decreased compared to the CON group, reaching levels akin to the normal-fed BK group. This superiority of the CA-g-CS/QR group over the QR group further substantiates the beneficial therapeutic impact of CA-g-CS/QR on broilers&#x2019; intestinal tracts infected with avian <italic>E. coli</italic>. This treatment not only enhances the broilers&#x2019; resistance against avian <italic>E. coli</italic> infection but also plays a vital biological role in safeguarding the health of the broiler intestinal tract.</p>
<p><xref ref-type="fig" rid="fig4">Figure 4C</xref> illustrates a histogram detailing the distribution of highly abundant phylum-level microorganisms, predominantly composed of Firmicutes, Bacteroidota, Proteobacteria, Actinobacteria, and others, collectively constituting over 90% of the total microorganisms. As depicted in <xref ref-type="fig" rid="fig4">Figure 4C</xref>, CA-g-CS/QR positively influenced the distribution of bacterial flora in the intestinal tract compared to the MOD group. Relative to the CON group, CA-g-CS/QR demonstrated enhanced ability to elevate the relative abundance of Firmicutes and, to some extent, Bacteroidota and Actinobacteriota. This increase fostered the growth of beneficial bacteria within the broiler&#x2019;s intestinal tract. Importantly, CA-g-CS/QR&#x2019;s capacity to boost the abundance of beneficial bacteria exceeded that of QR alone. Consequently, CA-g-CS/QR significantly improved flora distribution in the broiler intestine following the challenge, enhancing the count of beneficial bacteria and mitigating the proliferation of harmful bacteria. This ultimately contributes to sustaining intestinal health in broilers compared to QR alone.</p>
<p><xref ref-type="fig" rid="fig4">Figure 4D</xref> is a histogram of the distribution of microorganisms of genera with large relative abundance at the genus level, which mainly included: Bacteroides, Ruminalococcus, and Faecalibacterium, occupying more than 90% of the total microorganisms, which belong to the most common bacterial genera in the intestinal tract of broilerss. The relative abundances of Bacteroides, Ruminalococcus and Faecalibacterium in each group were as follows: 23.82, 7.75, and 6.60% in the BK group; 14.46, 13.31, and 4.21% in the MOD group; 15.65, 5.36, and 6.40% in the CON group; and 17.12, 5.24, and 7.79% in the QR group.; 20.47, 8.81 and 10.52% in the CA-g-CS/QR group.</p>
</sec>
<sec id="sec39">
<label>3.8.4</label>
<title>Alpha diversity</title>
<p>The greater the chao and shannon indices in <italic>&#x03B1;</italic>-diversity, the higher the diversity, the smaller the simpson index, the higher the diversity; the greater the pielou_e index, the more evenly distributed the community. As shown in <xref ref-type="table" rid="tab1">Table 1</xref>, compared with the CON group, the chao index, shannon index, and pielou_e index were higher in the QR and CA-g-CS/QR groups, indicating that the QR and CA-g-CS/QR groups were better than the CON group in terms of diversity of the community and uniformity of the species distribution, and CA-g-CS/QR group is better than QR group.</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Sample diversity index.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Group name</th>
<th align="center" valign="top">Chao</th>
<th align="center" valign="top">Shannon</th>
<th align="center" valign="top">Simpson</th>
<th align="center" valign="top">Pielou_e</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">BK</td>
<td align="char" valign="top" char=".">382.67</td>
<td align="char" valign="top" char=".">6.26</td>
<td align="char" valign="top" char=".">0.94</td>
<td align="char" valign="top" char=".">0.74</td>
</tr>
<tr>
<td align="left" valign="top">MOD</td>
<td align="char" valign="top" char=".">289.63</td>
<td align="char" valign="top" char=".">5.25</td>
<td align="char" valign="top" char=".">0.91</td>
<td align="char" valign="top" char=".">0.65</td>
</tr>
<tr>
<td align="left" valign="top">CON</td>
<td align="char" valign="top" char=".">320.71</td>
<td align="char" valign="top" char=".">5.54</td>
<td align="char" valign="top" char=".">0.96</td>
<td align="char" valign="top" char=".">0.67</td>
</tr>
<tr>
<td align="left" valign="top">QR</td>
<td align="char" valign="top" char=".">350.49</td>
<td align="char" valign="top" char=".">5.52</td>
<td align="char" valign="top" char=".">0.93</td>
<td align="char" valign="top" char=".">0.67</td>
</tr>
<tr>
<td align="left" valign="top">CA-g-CS/QR</td>
<td align="char" valign="top" char=".">361.60</td>
<td align="char" valign="top" char=".">6.21</td>
<td align="char" valign="top" char=".">0.93</td>
<td align="char" valign="top" char=".">0.75</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="sec40">
<label>3.8.5</label>
<title>Beta diversity</title>
<p>The relationships between microbial communities in the different treatment groups are represented by PCoA plots (<xref ref-type="fig" rid="fig5">Figure 5A</xref>). The microbial communities in each group formed separate clusters of clusters with overlap between groups. In contrast, the microbial community in the CA-g-CS/QR group formed clusters that were clearly separated from the other groups.</p>
<fig position="float" id="fig5">
<label>Figure 5</label>
<caption>
<p>Analysis results of PcoA and T test. <bold>(A)</bold> PcoA results analysis graph. <bold>(B)</bold> Species difference analysis between QR group and CON group T-test group at species level (&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05). <bold>(C)</bold> Species difference analysis between CA-g-CS/QR group and CON group T-test group at genus level (&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05, &#x002A;&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.01). <bold>(D)</bold> Species difference analysis between CA-g-CS/QR group and CON group T-test group at species level (&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05, &#x002A;&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.01).</p>
</caption>
<graphic xlink:href="fvets-11-1470781-g005.tif"/>
</fig>
</sec>
<sec id="sec41">
<label>3.8.6</label>
<title>T-test analysis</title>
<p>As shown in <xref ref-type="fig" rid="fig5">Figure 5B</xref>, <italic>Bacteroides clarus</italic> and <italic>Megamonas hypermegale</italic> were significantly higher in the QR group compared with the CON group (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05). In <xref ref-type="fig" rid="fig5">Figure 5C</xref>, at the genus level, UGG-005 and Enterococcus were significantly different in the CA-g-CS/QR group compared with the CON group (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05), and the genus Tyzzerella was highly significantly different between the two groups (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.01), whereas there were no species that were significantly different between the QR group and the CON group at this taxonomic level. At the species level (<xref ref-type="fig" rid="fig5">Figure 5D</xref>), <italic>Enterococcus cecorum</italic> and <italic>Megamonas hypermegale</italic> were significantly higher in the CA-g-CS/QR group compared with the CON group (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05), and Anaerotignum lactatifermentans anaerobes were highly significant higher than in the control group (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.01). It indicates that the increase of beneficial bacteria in the CA-g-CS/QR group reflects the richness of the intestinal flora.</p>
</sec>
</sec>
<sec id="sec42">
<label>3.9</label>
<title>Organizational distribution results</title>
<sec id="sec43">
<label>3.9.1</label>
<title>Method specificity</title>
<p>The chemical structures of QR and KF are shown in <xref ref-type="fig" rid="fig6">Figure 6A</xref>, which also shows representative chromatograms of blank tissue (<xref ref-type="fig" rid="fig6">Figure 6B</xref>), blank tissue containing QR and KF standards (<xref ref-type="fig" rid="fig6">Figure 6C</xref>), and tissue extract from broilers after oral administration of QR (<xref ref-type="fig" rid="fig6">Figure 6D</xref>). Under the assay conditions, no interference peaks were observed in the blank tissues. The retention time was 2.43&#x2009;min for QR and 4.48&#x2009;min for KF.</p>
<fig position="float" id="fig6">
<label>Figure 6</label>
<caption>
<p>LC&#x2013;MS chromatogram of QR and KF. <bold>(A)</bold> Chemical structural formulae of QR and KF. <bold>(B)</bold> LC&#x2013;MS chromatograms of pooled blank tissue. <bold>(C)</bold> Blank tissue with QR at concentration of 500&#x2009;ng/mL and KF with 20&#x2009;&#x03BC;L of 40&#x2009;&#x03BC;g/mL. <bold>(D)</bold> The tissue at 2&#x2009;h of a broiler following oral administration of QR. QR and KF were detected at m/z 303&#x2009;&#x2192;&#x2009;229.1 and 287&#x2009;&#x2192;&#x2009;164.9, respectively.</p>
</caption>
<graphic xlink:href="fvets-11-1470781-g006.tif"/>
</fig>
</sec>
<sec id="sec44">
<label>3.9.2</label>
<title>Method validation</title>
<p>Utilizing the measured concentrations of QR and KF within the matrix as the independent variable and the ratio of the peak area of the measured substance to the actual peak area of the internal standard as the dependent variable, linear regression calculations were executed to derive the regression equation, thereby establishing the standard curve. The outcomes are presented in <xref ref-type="table" rid="tab2">Table 2</xref>. Precision, accuracy, and extraction recovery results are detailed in <xref ref-type="table" rid="tab3">Table 3</xref>, demonstrating conformity with testing conditions for biological tissue samples without the interference of matrix effects.</p>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption>
<p>Linear equations of QR in various tissue samples of white feather broilers.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Tissue</th>
<th align="left" valign="top">Linear range (ng/mL)</th>
<th align="left" valign="top">Linear regression equation</th>
<th align="left" valign="top">
<italic>R</italic>
<sup>2</sup>
</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Heart</td>
<td align="char" valign="top" char="&#x2013;">5&#x2013;200</td>
<td align="center" valign="top">Y&#x2009;=&#x2009;0.0001x&#x2009;+&#x2009;0.0028</td>
<td align="char" valign="top" char=".">0.9952</td>
</tr>
<tr>
<td align="left" valign="top">Liver</td>
<td align="char" valign="top" char="&#x2013;">20&#x2013;1,000</td>
<td align="center" valign="top">Y&#x2009;=&#x2009;0.0003x&#x2009;+&#x2009;0.0027</td>
<td align="char" valign="top" char=".">0.9991</td>
</tr>
<tr>
<td align="left" valign="top">Kidney</td>
<td align="char" valign="top" char="&#x2013;">20&#x2013;500</td>
<td align="center" valign="top">Y&#x2009;=&#x2009;0.0002x&#x2009;+&#x2009;0.0022</td>
<td align="char" valign="top" char=".">0.9944</td>
</tr>
<tr>
<td align="left" valign="top">Leg</td>
<td align="char" valign="top" char="&#x2013;">5&#x2013;200</td>
<td align="center" valign="top">Y&#x2009;=&#x2009;0.0003x&#x2009;+&#x2009;0.0061</td>
<td align="char" valign="top" char=".">0.9977</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap position="float" id="tab3">
<label>Table 3</label>
<caption>
<p>Precision, accuracy and recovery of the method for the determination of QR in tissues.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th rowspan="2"/>
<th align="left" valign="top" rowspan="2">Conc. (ng/mL)</th>
<th align="center" valign="top" colspan="2">Within-run (<italic>n</italic>&#x2009;=&#x2009;6)</th>
<th align="center" valign="top" colspan="2">Between-run (<italic>n</italic>&#x2009;=&#x2009;6, three runs)</th>
<th align="left" valign="top" rowspan="2">Recovery (%)</th>
</tr>
<tr>
<th align="left" valign="top">Precision (RSD %)</th>
<th align="left" valign="top">Accuracy (%)</th>
<th align="left" valign="top">Precision (RSD %)</th>
<th align="left" valign="top">Accuracy (%)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top" rowspan="3">Heart</td>
<td align="center" valign="top">10</td>
<td align="char" valign="top" char=".">8.18</td>
<td align="char" valign="top" char="&#x00B1;">110.5 &#x00B1; 15.2</td>
<td align="char" valign="top" char=".">8.84</td>
<td align="char" valign="top" char="&#x00B1;">111.8 &#x00B1; 16.5</td>
<td align="char" valign="top" char="&#x00B1;">99.8 &#x00B1; 19.1</td>
</tr>
<tr>
<td align="center" valign="top">50</td>
<td align="char" valign="top" char=".">10.99</td>
<td align="char" valign="top" char="&#x00B1;">93.5 &#x00B1; 11.9</td>
<td align="char" valign="top" char=".">5.02</td>
<td align="char" valign="top" char="&#x00B1;">96.7 &#x00B1; 5.6</td>
<td align="char" valign="top" char="&#x00B1;">87.0 &#x00B1; 18.6</td>
</tr>
<tr>
<td align="center" valign="top">200</td>
<td align="char" valign="top" char=".">3.39</td>
<td align="char" valign="top" char="&#x00B1;">100.0 &#x00B1; 3.5</td>
<td align="char" valign="top" char=".">3.37</td>
<td align="char" valign="top" char="&#x00B1;">99.3 &#x00B1; 3.5</td>
<td align="char" valign="top" char="&#x00B1;">82.8 &#x00B1; 11.3</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="3">Liver</td>
<td align="center" valign="top">50</td>
<td align="char" valign="top" char=".">6.46</td>
<td align="char" valign="top" char="&#x00B1;">92.8 &#x00B1; 6.6</td>
<td align="char" valign="top" char=".">7.29</td>
<td align="char" valign="top" char="&#x00B1;">93.5 &#x00B1; 7.5</td>
<td align="char" valign="top" char="&#x00B1;">85.8 &#x00B1; 11.2</td>
</tr>
<tr>
<td align="center" valign="top">200</td>
<td align="char" valign="top" char=".">4.98</td>
<td align="char" valign="top" char="&#x00B1;">100.7 &#x00B1; 5.1</td>
<td align="char" valign="top" char=".">5.44</td>
<td align="char" valign="top" char="&#x00B1;">99.7 &#x00B1; 5.5</td>
<td align="char" valign="top" char="&#x00B1;">82.5 &#x00B1; 11.9</td>
</tr>
<tr>
<td align="center" valign="top">500</td>
<td align="char" valign="top" char=".">3.57</td>
<td align="char" valign="top" char="&#x00B1;">97.9 &#x00B1; 3.5</td>
<td align="char" valign="top" char=".">4.17</td>
<td align="char" valign="top" char="&#x00B1;">97.7 &#x00B1; 4.1</td>
<td align="char" valign="top" char="&#x00B1;">100.8 &#x00B1; 9.2</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="3">Kidney</td>
<td align="center" valign="top">50</td>
<td align="char" valign="top" char=".">5.64</td>
<td align="char" valign="top" char="&#x00B1;">98.1 &#x00B1; 6.9</td>
<td align="char" valign="top" char=".">4.82</td>
<td align="char" valign="top" char="&#x00B1;">98.0 &#x00B1; 5.9</td>
<td align="char" valign="top" char="&#x00B1;">105.9 &#x00B1; 2.3</td>
</tr>
<tr>
<td align="center" valign="top">200</td>
<td align="char" valign="top" char=".">6.76</td>
<td align="char" valign="top" char="&#x00B1;">99.8 &#x00B1; 7.2</td>
<td align="char" valign="top" char=".">7.63</td>
<td align="char" valign="top" char="&#x00B1;">100.5 &#x00B1; 8.2</td>
<td align="char" valign="top" char="&#x00B1;">82.4 &#x00B1; 12.9</td>
</tr>
<tr>
<td align="center" valign="top">500</td>
<td align="char" valign="top" char=".">4.28</td>
<td align="char" valign="top" char="&#x00B1;">98.8 &#x00B1; 4.3</td>
<td align="char" valign="top" char=".">5.13</td>
<td align="char" valign="top" char="&#x00B1;">98.2 &#x00B1; 5.2</td>
<td align="char" valign="top" char="&#x00B1;">104.5 &#x00B1; 10.1</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="3">Leg</td>
<td align="center" valign="top">10</td>
<td align="char" valign="top" char=".">4.51</td>
<td align="char" valign="top" char="&#x00B1;">94.3 &#x00B1; 13.3</td>
<td align="char" valign="top" char=".">3.05</td>
<td align="char" valign="top" char="&#x00B1;">95.0 &#x00B1; 9.0</td>
<td align="char" valign="top" char="&#x00B1;">97.7 &#x00B1; 3.3</td>
</tr>
<tr>
<td align="center" valign="top">50</td>
<td align="char" valign="top" char=".">2.96</td>
<td align="char" valign="top" char="&#x00B1;">96.7 &#x00B1; 4.0</td>
<td align="char" valign="top" char=".">2.27</td>
<td align="char" valign="top" char="&#x00B1;">97.6 &#x00B1; 3.1</td>
<td align="char" valign="top" char="&#x00B1;">93.1 &#x00B1; 2.6</td>
</tr>
<tr>
<td align="center" valign="top">200</td>
<td align="char" valign="top" char=".">3.31</td>
<td align="char" valign="top" char="&#x00B1;">99.8 &#x00B1; 3.6</td>
<td align="char" valign="top" char=".">3.50</td>
<td align="char" valign="top" char="&#x00B1;">99.7 &#x00B1; 3.8</td>
<td align="char" valign="top" char="&#x00B1;">99.8 &#x00B1; 7.2</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>Each value represents the mean&#x2009;&#x00B1;&#x2009;SD (<italic>n</italic>&#x2009;=&#x2009;6).</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="sec45">
<label>3.9.3</label>
<title>Application to tissue distribution</title>
<p>The distribution comparison between CA-g-CS/QR and QR in white-feathered broilers is illustrated in <xref ref-type="fig" rid="fig7">Figure 7A</xref>, while the specific drug concentration distribution across tissues is detailed in <xref ref-type="fig" rid="fig7">Figure 7B</xref>. Notably, the CA-g-CS/QR group exhibited a notably broader distribution range than the QR group. Distribution was observed in the heart, liver, kidney, and leg of the CA-g-CS/QR group, with a higher distribution noted in liver and kidney tissues at equivalent doses. This suggests a potential prolongation of QR elimination facilitated by CA-g-CS. Conversely, QR was solely detected in the liver and kidney in the QR group. Both administration groups predominantly concentrated in tissues with abundant blood flow, namely the liver and kidney, with minimal content found in the heart and legs. This observation aligns with the notion that QR metabolism primarily occurs in the liver and its subsequent excretion via the kidneys. CA-g-CS/QR expanded QR distribution within heart and leg tissues, prolonging QR&#x2019;s relative retention time in the liver and kidney tissues. This adaptation is presumed to enhance QR&#x2019;s bioavailability <italic>in vivo</italic>.</p>
<fig position="float" id="fig7">
<label>Figure 7</label>
<caption>
<p>QR and CA-g-CS/QR tissue distribution. <bold>(A)</bold> Tissue distribution modeling of CA-g-CS/QR and QR in white-feathered broilers, dark tissue color means high drug content, light color means less drug content. <bold>(B)</bold> Plot of <italic>in vivo</italic> tissue distribution results in white-feathered broilers after oral of QR or CA-g-CS/QR (<italic>n</italic>&#x2009;=&#x2009;6, &#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05, &#x002A;&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.01).</p>
</caption>
<graphic xlink:href="fvets-11-1470781-g007.tif"/>
</fig>
</sec>
</sec>
<sec id="sec46">
<label>3.10</label>
<title>Analysis of QR metabolites <italic>in vivo</italic></title>
<p>Comprehensive analysis of liver extracts from the QR and CA-g-CS/QR groups, compared with the blank control group, revealed the presence of 10 suspected QR metabolites. Notably, three metabolites displayed dual peaks within the same ion chromatogram, indicating the possibility of these compounds being isomers. Among these, as depicted in <xref ref-type="fig" rid="fig8">Figure 8</xref>, M1, M5, M6, M7, and M8 corresponded to those previously identified in animal tissues, organs, or human blood and urine, as reported in existing literature. Additionally, no metabolites exceeding m/z&#x2009;&#x003E;&#x2009;500 were detected in tissues, organs, blood, or urine, aligning with existing literature findings (<xref ref-type="bibr" rid="ref28 ref29 ref30">28&#x2013;30</xref>).</p>
<fig position="float" id="fig8">
<label>Figure 8</label>
<caption>
<p>Predicted structural formulae for QR and CA-g-CS/QR metabolites. The same numbered metabolites being isomers.</p>
</caption>
<graphic xlink:href="fvets-11-1470781-g008.tif"/>
</fig>
<p>QR sulfate is an important metabolite of QR. m/z of M1 measured in the sample was 380.99, which means 80&#x2009;Da more than the molecular ion peak of QR that is one sulfated molecular weight, and the fitted elemental composition was C<sub>15</sub>H<sub>9</sub>O<sub>10</sub>S, therefore, it was speculated that M1 might be QR monosulfate (QR&#x2009;+&#x2009;SO<sub>3</sub>).</p>
<p>M2 measured m/z is 253.05, 48&#x2009;Da that is three oxygen molecular weights less than the molecular ion peak of QR, and the fitted elemental composition is C<sub>15</sub>H<sub>9</sub>O<sub>4</sub>, which is presumed to be the metabolite of QR de-trioxidation. M3 measured m/z is 269.04, 32&#x2009;Da which is two oxygen molecular weights less than the molecular ion peak of QR, and the fitted elemental composition is C<sub>15</sub>H<sub>9</sub>O<sub>5</sub>, which is presumed to be the metabolite of QR de-dioxidation. The measured m/z of M4 is 317.03, which is one oxygen molecular weight more than the molecular ion peak of QR, and the fitted elemental composition is C<sub>15</sub>H<sub>10</sub>O<sub>8</sub>, which is presumed to be the metabolite of QR&#x2009;+&#x2009;O.</p>
<p>QR glucuronide is another important metabolite of QR, and the m/z measured for M5 was 477.06, which may be QR glucuronide (QR&#x2009;+&#x2009;C<sub>6</sub>H<sub>8</sub>O<sub>6</sub>), with a possible substitution position of either the 3-position or the 7-position, and thus possibly QR-3-O-glucuronide or QR-7-O-glucuronide.</p>
<p>The measured m/z of M6 was 491.08, and its structure was presumed to be methyl QR glucuronide, which may be substituted at 3 or 7 positions, and thus may be methyl QR glucuronide with different substitution positions.</p>
<p>M7&#x2009;m/z is 396.98, and the fitted elemental composition is C<sub>15</sub>H<sub>9</sub>O<sub>11</sub>S, which is presumed to have a possible structure of QR&#x2009;+&#x2009;SO<sub>3</sub>&#x2009;+&#x2009;O, and there may be substitutions at different positions. M8 has a measured m/z of 331.04, and the fitted elemental composition is C<sub>16</sub>H<sub>12</sub>O<sub>8</sub>, and therefore it is presumed to have a possible structure of QR&#x2009;+&#x2009;CH<sub>2</sub>O. The m/z of M9 is 285.04, which is one oxygen molecular weight less than the molecular ion peak of QR, and the presumed elemental composition is C<sub>15</sub>H<sub>10</sub>O<sub>6</sub>, which means that M9 may be a QR deoxygenation metabolite. m/z measured for M10 was 315.05 and the fitted elemental composition was C<sub>16</sub>H<sub>11</sub>O<sub>7</sub>, which is presumed to be a QR methylation product.</p>
</sec>
</sec>
<sec sec-type="discussion" id="sec47">
<label>4</label>
<title>Discussion</title>
<p>Scanning electron microscopy revealed that the prepared CA-g-CS/QR was uniformly dispersed without aggregation, and its particle size was smaller compared to the original drug, which presented as larger rod-like crystals. The differences in morphology and particle size between the lyophilized CA-g-CS/QR solution and its individual components (CA-g-CS and QR) clearly demonstrate the successful preparation of the CA-g-CS/QR lyophilized powder.</p>
<p>Bacterial concentration in the liquid can be assessed using absorbance at 600&#x2009;nm; higher absorbance values indicate higher bacterial concentrations. By examining the antibacterial curves of CA-g-CS, CA-g-CS/QR, and QR, their inhibitory effects against avian <italic>E. coli</italic> were evaluated. Notably, CA-g-CS/QR exhibited a significantly stronger antibacterial effect against avian <italic>E. coli</italic>. Alkaline phosphatase (AKP), an enzyme located between the bacterial cell wall and membrane, is not detectable outside the cell under normal growth conditions. However, when the cell wall is disrupted, AKP leaks into the extracellular space, catalyzing the hydrolysis of disodium benzene phosphate to produce free phenol and phosphoric acid. The resulting phenol, in an alkaline solution, reacts with 4-aminoantipyrine and is oxidized by potassium ferricyanide to produce a red quinone derivative, which serves as an indicator of enzyme activity (<xref ref-type="bibr" rid="ref31">31</xref>). CA-g-CS/QR had a more pronounced effect than QR alone, supporting the notion that CA-g-CS enhances the bacteriostatic properties of QR.</p>
<p>Cell membrane integrity is crucial for cellular protection. When disrupted, small molecules are initially released, followed by larger molecules such as DNA and RNA (<xref ref-type="bibr" rid="ref32">32</xref>). The release of intracellular substances is a reliable indicator of membrane integrity. Nucleic acids, which are essential for protein synthesis, play a critical role in cellular functions; loss of these can lead to cell death (<xref ref-type="bibr" rid="ref33">33</xref>). Proteins, as fundamental components of life and cellular activity (<xref ref-type="bibr" rid="ref34">34</xref>), also serve as markers of membrane disruption. The changes observed in bacterial cells, including cell membrane cleavage and altered permeability, likely result from QR-induced membrane damage, leading to cell lysis and content leakage. CA-g-CS amplifies QR&#x2019;s effects, leading to significant protein loss.</p>
<p>Crystal violet, a hydrophobic dye, is inhibited by an intact bacterial cell membrane, preventing its entry. However, when the membrane is compromised, the dye penetrates and stains the membrane (<xref ref-type="bibr" rid="ref35">35</xref>). The cell membrane functions as a natural protective barrier for bacteria, contributing to their resistance to environmental challenges and recurrent infections. Biofilm formation, a key factor in antibiotic resistance (<xref ref-type="bibr" rid="ref36">36</xref>), was notably suppressed by CA-g-CS/QR in avian <italic>E. coli</italic>, suggesting its potential as a treatment to combat drug-resistant strains.</p>
<p>Adenosine triphosphate (ATP), a critical energy carrier in living organisms, directly affects cellular metabolism. Alterations in ATP content profoundly impact cellular physiological and pathological processes (<xref ref-type="bibr" rid="ref37">37</xref>). Declining ATP levels are typically associated with apoptosis, necrosis, or cellular toxicity (<xref ref-type="bibr" rid="ref38">38</xref>, <xref ref-type="bibr" rid="ref39">39</xref>). Our findings confirmed that QR negatively affects bacterial cell membranes, leading to a significant reduction in ATP levels.</p>
<p>Microbial communities in the chicken intestine, including Firmicutes, Bacteroidota, Proteobacteria, and Actinobacteria, are essential for maintaining a balanced intestinal microbiota, which is vital for host development, immunity, and metabolism (<xref ref-type="bibr" rid="ref40">40</xref>). Firmicutes, dominant in the intestinal flora, produce resilient endospores that ensure survival and transmission upon germination. Bacteroidota, widely distributed in the intestinal flora, contribute to carbohydrate degradation (<xref ref-type="bibr" rid="ref41 ref42 ref43">41&#x2013;43</xref>), while Actinobacteriota support animal growth and defense. Key genera such as Bacteroides, Ruminalococcus, and Faecalibacterium play important roles in nutrient digestion and absorption (<xref ref-type="bibr" rid="ref44">44</xref>). CA-g-CS/QR was shown to regulate microorganisms in the cecum by increasing the abundance of beneficial genera, thereby promoting intestinal health and supporting the growth of broilers.</p>
<p>QR&#x2019;s clinical utilization is limited by its low oral bioavailability due to poor water solubility and absorption. Our preliminary studies showed that CA-g-CS/QR significantly enhances QR&#x2019;s bioavailability <italic>in vivo</italic>, likely due to increased stability and reduced clearance in the body. This prolonged tissue retention time of QR delays its elimination. These findings provide important insights for the further development and clinical application of QR. In both the QR and CA-g-CS/QR groups, 10 metabolites were identified, indicating extensive metabolic transformation of QR in the liver, primarily through sulfation. Tissue distribution studies revealed that QR is highly concentrated in the liver with extended retention time, which likely accounts for its extensive liver metabolism. Further investigation is required to determine the impact of these metabolites on QR&#x2019;s bioactivity and bioavailability.</p>
</sec>
<sec sec-type="conclusions" id="sec48">
<label>5</label>
<title>Conclusion</title>
<p>Conclusively, this study unveils QR&#x2019;s inhibitory mechanism on avian <italic>E. coli</italic> through a comprehensive assessment encompassing growth curve analysis, crystal violet staining, nucleic acid and protein leakage, AKP, and ATP content. CA-g-CS significantly augments QR&#x2019;s antibacterial efficacy, potentially owing to the combined influence of chitosan and caffeic acid. <italic>In vivo</italic> assessments showcase CA-g-CS/QR&#x2019;s efficacy in ameliorating post-<italic>Escherichia coli</italic> infection conditions in broilers. It facilitates an increase in beneficial bacterial presence, reduces harmful bacteria, and more effectively modulates community diversity with uniform species distribution compared to QR alone. Moreover, scrutinizing drug tissue distribution unveils prolonged and intensified presence of QR&#x2019;s active ingredients, bolstering pharmacodynamic effects. Notably, the liver predominantly metabolizes orally administered QR, contributing to its diminished bioavailability due to the initial pass effect.</p>
<p>This study provides foundational data supporting the development and clinical application of QR, suggesting a potential strategy to enhance its therapeutic efficacy by prolonging its elimination rate. This approach holds promise for addressing the challenge of drug resistance in livestock and poultry. The CA-g-CS synthesized in this experiment demonstrates favorable physical and chemical properties, obviating the need for additional carriers typically required for traditional micelles. It shows potential for encapsulating other drugs to improve clinical efficacy. Future research directions could explore the encapsulation of various drugs by CA-g-CS to enhance solubility and optimize pharmacological effects. Ongoing comprehensive <italic>in vivo</italic> trials and clinical studies will further investigate these applications, aiming to provide insights and establish a foundation for the prevention and treatment of colibacillosis.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="sec49">
<title>Data availability statement</title>
<p>The data presented in the study are deposited in the Figshare Dryad Digital Repository repository, accession number <ext-link xlink:href="https://doi.org/10.6084/m9.figshare.27118692.v1" ext-link-type="uri">https://doi.org/10.6084/m9.figshare.27118692.v1</ext-link>.</p>
</sec>
<sec sec-type="ethics-statement" id="sec50">
<title>Ethics statement</title>
<p>The animal study was approved by Institutional Animal Ethics Committee of Hebei Agricultural University. The study was conducted in accordance with the local legislation and institutional requirements.</p>
</sec>
<sec sec-type="author-contributions" id="sec51">
<title>Author contributions</title>
<p>XR: Writing &#x2013; original draft. SY: Writing &#x2013; review &#x0026; editing. JR: Writing &#x2013; review &#x0026; editing. LM: Writing &#x2013; review &#x0026; editing. JL: Writing &#x2013; review &#x0026; editing. GW: Writing &#x2013; review &#x0026; editing.</p>
</sec>
<sec sec-type="funding-information" id="sec52">
<title>Funding</title>
<p>The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This work was supported by Hebei Natural Science Foundation (C2022204090), and Natural Science Foundation of China (32002343).</p>
</sec>
<sec sec-type="COI-statement" id="sec53">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="sec54">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<ref-list>
<title>References</title>
<ref id="ref1">
<label>1.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>C</given-names></name> <name><surname>Huang</surname> <given-names>L</given-names></name> <name><surname>Jin</surname> <given-names>S</given-names></name> <name><surname>Hou</surname> <given-names>R</given-names></name> <name><surname>Chen</surname> <given-names>M</given-names></name> <name><surname>Liu</surname> <given-names>Y</given-names></name> <etal/></person-group>. <article-title>D-aspartate in low-protein diets improves the pork quality by regulating energy and lipid metabolism via the gut microbes</article-title>. <source>J Agric Food Chem</source>. (<year>2023</year>) <volume>71</volume>:<fpage>12417</fpage>&#x2013;<lpage>30</lpage>. doi: <pub-id pub-id-type="doi">10.1021/acs.jafc.3c01974</pub-id>, PMID: <pub-id pub-id-type="pmid">37578298</pub-id></citation>
</ref>
<ref id="ref2">
<label>2.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Geva-Zatorsky</surname> <given-names>N</given-names></name> <name><surname>Sefik</surname> <given-names>E</given-names></name> <name><surname>Kua</surname> <given-names>L</given-names></name> <name><surname>Pasman</surname> <given-names>L</given-names></name> <name><surname>Tan</surname> <given-names>TG</given-names></name> <name><surname>Ortiz-Lopez</surname> <given-names>A</given-names></name> <etal/></person-group>. <article-title>Mining the human gut microbiota for immunomodulatory organisms</article-title>. <source>Cell</source>. (<year>2017</year>) <volume>168</volume>:<fpage>928</fpage>&#x2013;<lpage>943.e11</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.cell.2017.01.022</pub-id>, PMID: <pub-id pub-id-type="pmid">28215708</pub-id></citation>
</ref>
<ref id="ref3">
<label>3.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Glenwright</surname> <given-names>AJ</given-names></name> <name><surname>Pothula</surname> <given-names>KR</given-names></name> <name><surname>Bhamidimarri</surname> <given-names>SP</given-names></name> <name><surname>Chorev</surname> <given-names>DS</given-names></name> <name><surname>Basle</surname> <given-names>A</given-names></name> <name><surname>Firbank</surname> <given-names>SJ</given-names></name> <etal/></person-group>. <article-title>Structural basis for nutrient acquisition by dominant members of the human gut microbiota</article-title>. <source>Nature</source>. (<year>2017</year>) <volume>541</volume>:<fpage>407</fpage>&#x2013;<lpage>11</lpage>. doi: <pub-id pub-id-type="doi">10.1038/nature20828</pub-id>, PMID: <pub-id pub-id-type="pmid">28077872</pub-id></citation>
</ref>
<ref id="ref4">
<label>4.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sarowska</surname> <given-names>J</given-names></name> <name><surname>Futoma-Koloch</surname> <given-names>B</given-names></name> <name><surname>Jama-Kmiecik</surname> <given-names>A</given-names></name> <name><surname>Frej-Madrzak</surname> <given-names>M</given-names></name> <name><surname>Ksiazczyk</surname> <given-names>M</given-names></name> <name><surname>Bugla-Ploskonska</surname> <given-names>G</given-names></name> <etal/></person-group>. <article-title>Virulence factors, prevalence and potential transmission of extraintestinal pathogenic <italic>escherichia coli</italic> isolated from different sources: recent reports</article-title>. <source>Gut Pathog</source>. (<year>2019</year>) <volume>11</volume>:<fpage>10</fpage>. doi: <pub-id pub-id-type="doi">10.1186/s13099-019-0290-0</pub-id>, PMID: <pub-id pub-id-type="pmid">30828388</pub-id></citation>
</ref>
<ref id="ref5">
<label>5.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Denamur</surname> <given-names>E</given-names></name> <name><surname>Clermont</surname> <given-names>O</given-names></name> <name><surname>Bonacorsi</surname> <given-names>S</given-names></name> <name><surname>Gordon</surname> <given-names>D</given-names></name></person-group>. <article-title>The population genetics of pathogenic <italic>escherichia coli</italic></article-title>. <source>Nat Rev Microbiol</source>. (<year>2021</year>) <volume>19</volume>:<fpage>37</fpage>&#x2013;<lpage>54</lpage>. doi: <pub-id pub-id-type="doi">10.1038/s41579-020-0416-x</pub-id></citation>
</ref>
<ref id="ref6">
<label>6.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Roth</surname> <given-names>N</given-names></name> <name><surname>Kasbohrer</surname> <given-names>A</given-names></name> <name><surname>Mayrhofer</surname> <given-names>S</given-names></name> <name><surname>Zitz</surname> <given-names>U</given-names></name> <name><surname>Hofacre</surname> <given-names>C</given-names></name> <name><surname>Domig</surname> <given-names>KJ</given-names></name></person-group>. <article-title>The application of antibiotics in broiler production and the resulting antibiotic resistance in <italic>escherichia coli</italic>: a global overview</article-title>. <source>Poult Sci</source>. (<year>2019</year>) <volume>98</volume>:<fpage>1791</fpage>&#x2013;<lpage>804</lpage>. doi: <pub-id pub-id-type="doi">10.3382/ps/pey539</pub-id>, PMID: <pub-id pub-id-type="pmid">30544256</pub-id></citation>
</ref>
<ref id="ref7">
<label>7.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Braz</surname> <given-names>VS</given-names></name> <name><surname>Melchior</surname> <given-names>K</given-names></name> <name><surname>Moreira</surname> <given-names>CG</given-names></name></person-group>. <article-title><italic>Escherichia coli</italic> as a multifaceted pathogenic and versatile bacterium</article-title>. <source>Front Cell Infect Microbiol</source>. (<year>2020</year>) <volume>10</volume>:<fpage>548492</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fcimb.2020.548492</pub-id>, PMID: <pub-id pub-id-type="pmid">33409157</pub-id></citation>
</ref>
<ref id="ref8">
<label>8.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Luo</surname> <given-names>M</given-names></name> <name><surname>Tian</surname> <given-names>R</given-names></name> <name><surname>Lu</surname> <given-names>N</given-names></name></person-group>. <article-title>Quercetin inhibited endothelial dysfunction and atherosclerosis in apolipoprotein e-deficient mice: critical roles for nadph oxidase and heme oxygenase-1</article-title>. <source>J Agric Food Chem</source>. (<year>2020</year>) <volume>68</volume>:<fpage>10875</fpage>&#x2013;<lpage>83</lpage>. doi: <pub-id pub-id-type="doi">10.1021/acs.jafc.0c03907</pub-id>, PMID: <pub-id pub-id-type="pmid">32880455</pub-id></citation>
</ref>
<ref id="ref9">
<label>9.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname> <given-names>X</given-names></name> <name><surname>Ni</surname> <given-names>L</given-names></name> <name><surname>Zhu</surname> <given-names>Y</given-names></name> <name><surname>Liu</surname> <given-names>N</given-names></name> <name><surname>Fan</surname> <given-names>D</given-names></name> <name><surname>Wang</surname> <given-names>M</given-names></name> <etal/></person-group>. <article-title>Quercetin inhibited the formation of lipid oxidation products in thermally treated soybean oil by trapping intermediates</article-title>. <source>J Agric Food Chem</source>. (<year>2021</year>) <volume>69</volume>:<fpage>3479</fpage>&#x2013;<lpage>88</lpage>. doi: <pub-id pub-id-type="doi">10.1021/acs.jafc.1c00046</pub-id>, PMID: <pub-id pub-id-type="pmid">33703898</pub-id></citation>
</ref>
<ref id="ref10">
<label>10.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kurt</surname> <given-names>AH</given-names></name> <name><surname>Olutas</surname> <given-names>EB</given-names></name> <name><surname>Avcioglu</surname> <given-names>F</given-names></name> <name><surname>Karakus</surname> <given-names>H</given-names></name> <name><surname>Sungur</surname> <given-names>MA</given-names></name> <name><surname>Kara</surname> <given-names>OC</given-names></name> <etal/></person-group>. <article-title>Quercetin- and caffeic acid-functionalized chitosan-capped colloidal silver nanoparticles: one-pot synthesis, characterization, and anticancer and antibacterial activities</article-title>. <source>Beilstein J Nanotechnol</source>. (<year>2023</year>) <volume>14</volume>:<fpage>362</fpage>&#x2013;<lpage>76</lpage>. doi: <pub-id pub-id-type="doi">10.3762/bjnano.14.31</pub-id>, PMID: <pub-id pub-id-type="pmid">36998241</pub-id></citation>
</ref>
<ref id="ref11">
<label>11.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Veiko</surname> <given-names>AG</given-names></name> <name><surname>Olchowik-Grabarek</surname> <given-names>E</given-names></name> <name><surname>Sekowski</surname> <given-names>S</given-names></name> <name><surname>Roszkowska</surname> <given-names>A</given-names></name> <name><surname>Lapshina</surname> <given-names>EA</given-names></name> <name><surname>Dobrzynska</surname> <given-names>I</given-names></name> <etal/></person-group>. <article-title>Antimicrobial activity of quercetin, naringenin and catechin: flavonoids inhibit staphylococcus aureus-induced hemolysis and modify membranes of bacteria and erythrocytes</article-title>. <source>Molecules</source>. (<year>2023</year>) <volume>28</volume>:<fpage>28</fpage>. doi: <pub-id pub-id-type="doi">10.3390/molecules28031252</pub-id>, PMID: <pub-id pub-id-type="pmid">36770917</pub-id></citation>
</ref>
<ref id="ref12">
<label>12.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pal</surname> <given-names>A</given-names></name> <name><surname>Tripathi</surname> <given-names>A</given-names></name></person-group>. <article-title>Quercetin inhibits carbapenemase and efflux pump activities among carbapenem-resistant gram-negative bacteria</article-title>. <source>APMIS</source>. (<year>2020</year>) <volume>128</volume>:<fpage>251</fpage>&#x2013;<lpage>9</lpage>. doi: <pub-id pub-id-type="doi">10.1111/apm.13015</pub-id>, PMID: <pub-id pub-id-type="pmid">31755586</pub-id></citation>
</ref>
<ref id="ref13">
<label>13.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Shabir</surname> <given-names>I</given-names></name> <name><surname>Kumar</surname> <given-names>PV</given-names></name> <name><surname>Shams</surname> <given-names>R</given-names></name> <name><surname>Dar</surname> <given-names>AH</given-names></name> <name><surname>Dash</surname> <given-names>KK</given-names></name> <name><surname>Khan</surname> <given-names>SA</given-names></name> <etal/></person-group>. <article-title>Promising bioactive properties of quercetin for potential food applications and health benefits: a review</article-title>. <source>Front Nutr</source>. (<year>2022</year>) <volume>9</volume>:<fpage>999752</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fnut.2022.999752</pub-id>, PMID: <pub-id pub-id-type="pmid">36532555</pub-id></citation>
</ref>
<ref id="ref14">
<label>14.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nguyen</surname> <given-names>T</given-names></name> <name><surname>Bhattacharya</surname> <given-names>D</given-names></name></person-group>. <article-title>Antimicrobial activity of quercetin: an approach to its mechanistic principle</article-title>. <source>Molecules</source>. (<year>2022</year>) <volume>27</volume>:<fpage>2494</fpage>. doi: <pub-id pub-id-type="doi">10.3390/molecules27082494</pub-id>, PMID: <pub-id pub-id-type="pmid">35458691</pub-id></citation>
</ref>
<ref id="ref15">
<label>15.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>S</given-names></name> <name><surname>Li</surname> <given-names>C</given-names></name> <name><surname>Zhang</surname> <given-names>L</given-names></name> <name><surname>Sun</surname> <given-names>B</given-names></name> <name><surname>Cui</surname> <given-names>Y</given-names></name> <name><surname>Sang</surname> <given-names>F</given-names></name></person-group>. <article-title>Isolation and biological activity of natural chalcones based on antibacterial mechanism classification</article-title>. <source>Bioorg Med Chem</source>. (<year>2023</year>) <volume>93</volume>:<fpage>117454</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.bmc.2023.117454</pub-id>, PMID: <pub-id pub-id-type="pmid">37659218</pub-id></citation>
</ref>
<ref id="ref16">
<label>16.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Egorov</surname> <given-names>AR</given-names></name> <name><surname>Kirichuk</surname> <given-names>AA</given-names></name> <name><surname>Rubanik</surname> <given-names>VV</given-names></name> <name><surname>Rubanik</surname> <given-names>VJ</given-names></name> <name><surname>Tskhovrebov</surname> <given-names>AG</given-names></name> <name><surname>Kritchenkov</surname> <given-names>AS</given-names></name></person-group>. <article-title>Chitosan and its derivatives: preparation and antibacterial properties</article-title>. <source>Materials (Basel)</source>. (<year>2023</year>) <volume>16</volume>:<fpage>6076</fpage>. doi: <pub-id pub-id-type="doi">10.3390/ma16186076</pub-id>, PMID: <pub-id pub-id-type="pmid">37763353</pub-id></citation>
</ref>
<ref id="ref17">
<label>17.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Manna</surname> <given-names>S</given-names></name> <name><surname>Seth</surname> <given-names>A</given-names></name> <name><surname>Gupta</surname> <given-names>P</given-names></name> <name><surname>Nandi</surname> <given-names>G</given-names></name> <name><surname>Dutta</surname> <given-names>R</given-names></name> <name><surname>Jana</surname> <given-names>S</given-names></name> <etal/></person-group>. <article-title>Chitosan derivatives as carriers for drug delivery and biomedical applications</article-title>. <source>ACS Biomater Sci Eng</source>. (<year>2023</year>) <volume>9</volume>:<fpage>2181</fpage>&#x2013;<lpage>202</lpage>. doi: <pub-id pub-id-type="doi">10.1021/acsbiomaterials.2c01297</pub-id>, PMID: <pub-id pub-id-type="pmid">37036371</pub-id></citation>
</ref>
<ref id="ref18">
<label>18.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kankariya</surname> <given-names>Y</given-names></name> <name><surname>Chatterjee</surname> <given-names>B</given-names></name></person-group>. <article-title>Biomedical application of chitosan and chitosan derivatives: a comprehensive review</article-title>. <source>Curr Pharm Des</source>. (<year>2023</year>) <volume>29</volume>:<fpage>1311</fpage>&#x2013;<lpage>25</lpage>. doi: <pub-id pub-id-type="doi">10.2174/1381612829666230524153002</pub-id>, PMID: <pub-id pub-id-type="pmid">37226781</pub-id></citation>
</ref>
<ref id="ref19">
<label>19.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Qin</surname> <given-names>Y</given-names></name> <name><surname>Li</surname> <given-names>P</given-names></name> <name><surname>Guo</surname> <given-names>Z</given-names></name></person-group>. <article-title>Cationic chitosan derivatives as potential antifungals: a review of structural optimization and applications</article-title>. <source>Carbohydr Polym</source>. (<year>2020</year>) <volume>236</volume>:<fpage>116002</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.carbpol.2020.116002</pub-id></citation>
</ref>
<ref id="ref20">
<label>20.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Negm</surname> <given-names>NA</given-names></name> <name><surname>Hefni</surname> <given-names>H</given-names></name> <name><surname>Abd-Elaal</surname> <given-names>A</given-names></name> <name><surname>Badr</surname> <given-names>EA</given-names></name> <name><surname>Abou</surname> <given-names>KM</given-names></name></person-group>. <article-title>Advancement on modification of chitosan biopolymer and its potential applications</article-title>. <source>Int J Biol Macromol</source>. (<year>2020</year>) <volume>152</volume>:<fpage>681</fpage>&#x2013;<lpage>702</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ijbiomac.2020.02.196</pub-id></citation>
</ref>
<ref id="ref21">
<label>21.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Khan</surname> <given-names>F</given-names></name> <name><surname>Bamunuarachchi</surname> <given-names>NI</given-names></name> <name><surname>Tabassum</surname> <given-names>N</given-names></name> <name><surname>Kim</surname> <given-names>YM</given-names></name></person-group>. <article-title>Caffeic acid and its derivatives: antimicrobial drugs toward microbial pathogens</article-title>. <source>J Agric Food Chem</source>. (<year>2021</year>) <volume>69</volume>:<fpage>2979</fpage>&#x2013;<lpage>3004</lpage>. doi: <pub-id pub-id-type="doi">10.1021/acs.jafc.0c07579</pub-id>, PMID: <pub-id pub-id-type="pmid">33656341</pub-id></citation>
</ref>
<ref id="ref22">
<label>22.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhou</surname> <given-names>J</given-names></name> <name><surname>Guo</surname> <given-names>M</given-names></name> <name><surname>Wu</surname> <given-names>D</given-names></name> <name><surname>Shen</surname> <given-names>M</given-names></name> <name><surname>Liu</surname> <given-names>D</given-names></name> <name><surname>Ding</surname> <given-names>T</given-names></name></person-group>. <article-title>Synthesis of uio-66 loaded-caffeic acid and study of its antibacterial mechanism</article-title>. <source>Food Chem</source>. (<year>2023</year>) <volume>402</volume>:<fpage>134248</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.foodchem.2022.134248</pub-id>, PMID: <pub-id pub-id-type="pmid">36179524</pub-id></citation>
</ref>
<ref id="ref23">
<label>23.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mude</surname> <given-names>H</given-names></name> <name><surname>Balapure</surname> <given-names>A</given-names></name> <name><surname>Thakur</surname> <given-names>A</given-names></name> <name><surname>Ganesan</surname> <given-names>R</given-names></name> <name><surname>Ray</surname> <given-names>DJ</given-names></name></person-group>. <article-title>Enhanced antibacterial, antioxidant and anticancer activity of caffeic acid by simple acid-base complexation with spermine/spermidine</article-title>. <source>Nat Prod Res</source>. (<year>2022</year>) <volume>36</volume>:<fpage>6453</fpage>&#x2013;<lpage>8</lpage>. doi: <pub-id pub-id-type="doi">10.1080/14786419.2022.2038597</pub-id>, PMID: <pub-id pub-id-type="pmid">35142575</pub-id></citation>
</ref>
<ref id="ref24">
<label>24.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ren</surname> <given-names>X</given-names></name> <name><surname>Ren</surname> <given-names>J</given-names></name> <name><surname>Li</surname> <given-names>Y</given-names></name> <name><surname>Yuan</surname> <given-names>S</given-names></name> <name><surname>Wang</surname> <given-names>G</given-names></name></person-group>. <article-title>Preparation of caffeic acid grafted chitosan self-assembled micelles to enhance oral bioavailability and antibacterial activity of quercetin</article-title>. <source>Front Vet Sci</source>. (<year>2023</year>) <volume>10</volume>:<fpage>1218025</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fvets.2023.1218025</pub-id></citation>
</ref>
<ref id="ref25">
<label>25.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Liu</surname> <given-names>J</given-names></name> <name><surname>Pu</surname> <given-names>H</given-names></name> <name><surname>Chen</surname> <given-names>C</given-names></name> <name><surname>Liu</surname> <given-names>Y</given-names></name> <name><surname>Bai</surname> <given-names>R</given-names></name> <name><surname>Kan</surname> <given-names>J</given-names></name> <etal/></person-group>. <article-title>Reaction mechanisms and structural and physicochemical properties of caffeic acid grafted chitosan synthesized in ascorbic acid and hydroxyl peroxide redox system</article-title>. <source>J Agric Food Chem</source>. (<year>2018</year>) <volume>66</volume>:<fpage>279</fpage>&#x2013;<lpage>89</lpage>. doi: <pub-id pub-id-type="doi">10.1021/acs.jafc.7b05135</pub-id>, PMID: <pub-id pub-id-type="pmid">29199827</pub-id></citation>
</ref>
<ref id="ref26">
<label>26.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tiwari</surname> <given-names>DK</given-names></name> <name><surname>Jha</surname> <given-names>G</given-names></name> <name><surname>Tiwari</surname> <given-names>M</given-names></name> <name><surname>Kerkar</surname> <given-names>S</given-names></name> <name><surname>Das</surname> <given-names>S</given-names></name> <name><surname>Gobre</surname> <given-names>VV</given-names></name></person-group>. <article-title>Synergistic antibacterial potential and cell surface topology study of carbon nanodots and tetracycline against <italic>E. coli</italic></article-title>. <source>Front Bioeng Biotechnol</source>. (<year>2021</year>) <volume>9</volume>:<fpage>626276</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fbioe.2021.626276</pub-id>, PMID: <pub-id pub-id-type="pmid">34676200</pub-id></citation>
</ref>
<ref id="ref27">
<label>27.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ma</surname> <given-names>X</given-names></name> <name><surname>Gao</surname> <given-names>L</given-names></name> <name><surname>Ma</surname> <given-names>Y</given-names></name> <name><surname>Zhang</surname> <given-names>X</given-names></name></person-group>. <article-title>Antibacterial activity and mechanism of zno/cu(2+)-chitosan/montmorillonite</article-title>. <source>J Wuhan Univ Technol Mater Sci Ed</source>. (<year>2021</year>) <volume>36</volume>:<fpage>510</fpage>&#x2013;<lpage>6</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s11595-021-2438-2</pub-id>, PMID: <pub-id pub-id-type="pmid">34483595</pub-id></citation>
</ref>
<ref id="ref28">
<label>28.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dragoni</surname> <given-names>S</given-names></name> <name><surname>Gee</surname> <given-names>J</given-names></name> <name><surname>Bennett</surname> <given-names>R</given-names></name> <name><surname>Valoti</surname> <given-names>M</given-names></name> <name><surname>Sgaragli</surname> <given-names>G</given-names></name></person-group>. <article-title>Red wine alcohol promotes quercetin absorption and directs its metabolism towards isorhamnetin and tamarixetin in rat intestine <italic>in vitro</italic></article-title>. <source>Br J Pharmacol</source>. (<year>2006</year>) <volume>147</volume>:<fpage>765</fpage>&#x2013;<lpage>71</lpage>. doi: <pub-id pub-id-type="doi">10.1038/sj.bjp.0706662</pub-id>, PMID: <pub-id pub-id-type="pmid">16444288</pub-id></citation>
</ref>
<ref id="ref29">
<label>29.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Herranz-Lopez</surname> <given-names>M</given-names></name> <name><surname>Borras-Linares</surname> <given-names>I</given-names></name> <name><surname>Olivares-Vicente</surname> <given-names>M</given-names></name> <name><surname>Galvez</surname> <given-names>J</given-names></name> <name><surname>Segura-Carretero</surname> <given-names>A</given-names></name> <name><surname>Micol</surname> <given-names>V</given-names></name></person-group>. <article-title>Correlation between the cellular metabolism of quercetin and its glucuronide metabolite and oxidative stress in hypertrophied 3t3-l1 adipocytes</article-title>. <source>Phytomedicine</source>. (<year>2017</year>) <volume>25</volume>:<fpage>25</fpage>&#x2013;<lpage>8</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.phymed.2016.12.008</pub-id>, PMID: <pub-id pub-id-type="pmid">28190467</pub-id></citation>
</ref>
<ref id="ref30">
<label>30.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chalet</surname> <given-names>C</given-names></name> <name><surname>Rubbens</surname> <given-names>J</given-names></name> <name><surname>Tack</surname> <given-names>J</given-names></name> <name><surname>Duchateau</surname> <given-names>GS</given-names></name> <name><surname>Augustijns</surname> <given-names>P</given-names></name></person-group>. <article-title>Intestinal disposition of quercetin and its phase-ii metabolites after oral administration in healthy volunteers</article-title>. <source>J Pharm Pharmacol</source>. (<year>2018</year>) <volume>70</volume>:<fpage>1002</fpage>&#x2013;<lpage>8</lpage>. doi: <pub-id pub-id-type="doi">10.1111/jphp.12929</pub-id>, PMID: <pub-id pub-id-type="pmid">29761870</pub-id></citation>
</ref>
<ref id="ref31">
<label>31.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Huang</surname> <given-names>J</given-names></name> <name><surname>Yang</surname> <given-names>L</given-names></name> <name><surname>Zou</surname> <given-names>Y</given-names></name> <name><surname>Luo</surname> <given-names>S</given-names></name> <name><surname>Wang</surname> <given-names>X</given-names></name> <name><surname>Liang</surname> <given-names>Y</given-names></name> <etal/></person-group>. <article-title>Antibacterial activity and mechanism of three isomeric terpineols of cinnamomum longepaniculatum leaf oil</article-title>. <source>Folia Microbiol (Praha)</source>. (<year>2021</year>) <volume>66</volume>:<fpage>59</fpage>&#x2013;<lpage>67</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s12223-020-00818-0</pub-id>, PMID: <pub-id pub-id-type="pmid">32895862</pub-id></citation>
</ref>
<ref id="ref32">
<label>32.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Guo</surname> <given-names>Y</given-names></name> <name><surname>Liu</surname> <given-names>Y</given-names></name> <name><surname>Zhang</surname> <given-names>Z</given-names></name> <name><surname>Chen</surname> <given-names>M</given-names></name> <name><surname>Zhang</surname> <given-names>D</given-names></name> <name><surname>Tian</surname> <given-names>C</given-names></name> <etal/></person-group>. <article-title>The antibacterial activity and mechanism of action of luteolin against <italic>trueperella pyogenes</italic></article-title>. <source>Infect Drug Resist</source>. (<year>2020</year>) <volume>13</volume>:<fpage>1697</fpage>&#x2013;<lpage>711</lpage>. doi: <pub-id pub-id-type="doi">10.2147/IDR.S253363</pub-id>, PMID: <pub-id pub-id-type="pmid">32606820</pub-id></citation>
</ref>
<ref id="ref33">
<label>33.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chen</surname> <given-names>P</given-names></name> <name><surname>Liu</surname> <given-names>Y</given-names></name> <name><surname>Li</surname> <given-names>C</given-names></name> <name><surname>Hua</surname> <given-names>S</given-names></name> <name><surname>Sun</surname> <given-names>C</given-names></name> <name><surname>Huang</surname> <given-names>L</given-names></name></person-group>. <article-title>Antibacterial mechanism of vanillin against <italic>escherichia coli</italic> o157: h7</article-title>. <source>Heliyon</source>. (<year>2023</year>) <volume>9</volume>:<fpage>e19280</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.heliyon.2023.e19280</pub-id>, PMID: <pub-id pub-id-type="pmid">37662745</pub-id></citation>
</ref>
<ref id="ref34">
<label>34.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>Z</given-names></name> <name><surname>Zhu</surname> <given-names>J</given-names></name> <name><surname>Li</surname> <given-names>W</given-names></name> <name><surname>Li</surname> <given-names>R</given-names></name> <name><surname>Wang</surname> <given-names>X</given-names></name> <name><surname>Qiao</surname> <given-names>H</given-names></name> <etal/></person-group>. <article-title>Antibacterial mechanism of the polysaccharide produced by chaetomium globosum cgmcc 6882 against staphylococcus aureus</article-title>. <source>Int J Biol Macromol</source>. (<year>2020</year>) <volume>159</volume>:<fpage>231</fpage>&#x2013;<lpage>5</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ijbiomac.2020.04.269</pub-id>, PMID: <pub-id pub-id-type="pmid">32387362</pub-id></citation>
</ref>
<ref id="ref35">
<label>35.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bae</surname> <given-names>JY</given-names></name> <name><surname>Seo</surname> <given-names>YH</given-names></name> <name><surname>Oh</surname> <given-names>SW</given-names></name></person-group>. <article-title>Antibacterial activities of polyphenols against foodborne pathogens and their application as antibacterial agents</article-title>. <source>Food Sci Biotechnol</source>. (<year>2022</year>) <volume>31</volume>:<fpage>985</fpage>&#x2013;<lpage>97</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10068-022-01058-3</pub-id>, PMID: <pub-id pub-id-type="pmid">35873378</pub-id></citation>
</ref>
<ref id="ref36">
<label>36.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Varela</surname> <given-names>MF</given-names></name> <name><surname>Stephen</surname> <given-names>J</given-names></name> <name><surname>Lekshmi</surname> <given-names>M</given-names></name> <name><surname>Ojha</surname> <given-names>M</given-names></name> <name><surname>Wenzel</surname> <given-names>N</given-names></name> <name><surname>Sanford</surname> <given-names>LM</given-names></name> <etal/></person-group>. <article-title>Bacterial resistance to antimicrobial agents</article-title>. <source>Antibiotics (Basel)</source>. (<year>2021</year>) <volume>10</volume>:<fpage>10</fpage>. doi: <pub-id pub-id-type="doi">10.3390/antibiotics10050593</pub-id>, PMID: <pub-id pub-id-type="pmid">34067579</pub-id></citation>
</ref>
<ref id="ref37">
<label>37.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jin</surname> <given-names>L</given-names></name> <name><surname>Chen</surname> <given-names>X</given-names></name> <name><surname>Pang</surname> <given-names>C</given-names></name> <name><surname>Zhou</surname> <given-names>L</given-names></name> <name><surname>Liu</surname> <given-names>Y</given-names></name> <name><surname>Sun</surname> <given-names>Y</given-names></name> <etal/></person-group>. <article-title>Investigation of the antibacterial mechanism of the novel bactericide dioctyldiethylenetriamine (xinjunan)</article-title>. <source>Pest Manag Sci</source>. (<year>2023</year>) <volume>79</volume>:<fpage>2780</fpage>&#x2013;<lpage>91</lpage>. doi: <pub-id pub-id-type="doi">10.1002/ps.7456</pub-id>, PMID: <pub-id pub-id-type="pmid">36924248</pub-id></citation>
</ref>
<ref id="ref38">
<label>38.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Han</surname> <given-names>Y</given-names></name> <name><surname>Sun</surname> <given-names>Z</given-names></name> <name><surname>Chen</surname> <given-names>W</given-names></name></person-group>. <article-title>Antimicrobial susceptibility and antibacterial mechanism of limonene against <italic>listeria monocytogenes</italic></article-title>. <source>Molecules</source>. (<year>2019</year>) <volume>25</volume>:<fpage>33</fpage>. doi: <pub-id pub-id-type="doi">10.3390/molecules25010033</pub-id>, PMID: <pub-id pub-id-type="pmid">31861877</pub-id></citation>
</ref>
<ref id="ref39">
<label>39.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wei</surname> <given-names>XY</given-names></name> <name><surname>Xia</surname> <given-names>W</given-names></name> <name><surname>Zhou</surname> <given-names>T</given-names></name></person-group>. <article-title>Antibacterial activity and action mechanism of a novel chitosan oligosaccharide derivative against dominant spoilage bacteria isolated from shrimp <italic>penaeus vannamei</italic></article-title>. <source>Lett Appl Microbiol</source>. (<year>2022</year>) <volume>74</volume>:<fpage>268</fpage>&#x2013;<lpage>76</lpage>. doi: <pub-id pub-id-type="doi">10.1111/lam.13596</pub-id>, PMID: <pub-id pub-id-type="pmid">34758122</pub-id></citation>
</ref>
<ref id="ref40">
<label>40.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wen</surname> <given-names>C</given-names></name> <name><surname>Yan</surname> <given-names>W</given-names></name> <name><surname>Mai</surname> <given-names>C</given-names></name> <name><surname>Duan</surname> <given-names>Z</given-names></name> <name><surname>Zheng</surname> <given-names>J</given-names></name> <name><surname>Sun</surname> <given-names>C</given-names></name> <etal/></person-group>. <article-title>Joint contributions of the gut microbiota and host genetics to feed efficiency in chickens</article-title>. <source>Microbiome</source>. (<year>2021</year>) <volume>9</volume>:<fpage>126</fpage>. doi: <pub-id pub-id-type="doi">10.1186/s40168-021-01040-x</pub-id></citation>
</ref>
<ref id="ref41">
<label>41.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Niu</surname> <given-names>Q</given-names></name> <name><surname>Li</surname> <given-names>P</given-names></name> <name><surname>Hao</surname> <given-names>S</given-names></name> <name><surname>Zhang</surname> <given-names>Y</given-names></name> <name><surname>Kim</surname> <given-names>SW</given-names></name> <name><surname>Li</surname> <given-names>H</given-names></name> <etal/></person-group>. <article-title>Dynamic distribution of the gut microbiota and the relationship with apparent crude fiber digestibility and growth stages in pigs</article-title>. <source>Sci Rep</source>. (<year>2015</year>) <volume>5</volume>:<fpage>9938</fpage>. doi: <pub-id pub-id-type="doi">10.1038/srep09938</pub-id>, PMID: <pub-id pub-id-type="pmid">25898122</pub-id></citation>
</ref>
<ref id="ref42">
<label>42.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Waite</surname> <given-names>DW</given-names></name> <name><surname>Taylor</surname> <given-names>MW</given-names></name></person-group>. <article-title>Exploring the avian gut microbiota: current trends and future directions</article-title>. <source>Front Microbiol</source>. (<year>2015</year>) <volume>6</volume>:<fpage>673</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fmicb.2015.00673</pub-id>, PMID: <pub-id pub-id-type="pmid">26191057</pub-id></citation>
</ref>
<ref id="ref43">
<label>43.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Guo</surname> <given-names>JR</given-names></name> <name><surname>Dong</surname> <given-names>XF</given-names></name> <name><surname>Liu</surname> <given-names>S</given-names></name> <name><surname>Tong</surname> <given-names>JM</given-names></name></person-group>. <article-title>High-throughput sequencing reveals the effect of <italic>Bacillus subtilis</italic> cgmcc 1.921 on the cecal microbiota and gene expression in ileum mucosa of laying hens</article-title>. <source>Poult Sci</source>. (<year>2018</year>) <volume>97</volume>:<fpage>2543</fpage>&#x2013;<lpage>56</lpage>. doi: <pub-id pub-id-type="doi">10.3382/ps/pey112</pub-id>, PMID: <pub-id pub-id-type="pmid">29897524</pub-id></citation>
</ref>
<ref id="ref44">
<label>44.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Andreani</surname> <given-names>NA</given-names></name> <name><surname>Donaldson</surname> <given-names>CJ</given-names></name> <name><surname>Goddard</surname> <given-names>M</given-names></name></person-group>. <article-title>A reasonable correlation between cloacal and cecal microbiomes in broiler chickens</article-title>. <source>Poult Sci</source>. (<year>2020</year>) <volume>99</volume>:<fpage>6062</fpage>&#x2013;<lpage>70</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.psj.2020.08.015</pub-id>, PMID: <pub-id pub-id-type="pmid">33142525</pub-id></citation>
</ref>
</ref-list>
</back>
</article>