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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Vet. Sci.</journal-id>
<journal-title>Frontiers in Veterinary Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Vet. Sci.</abbrev-journal-title>
<issn pub-type="epub">2297-1769</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fvets.2023.1074127</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Veterinary Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Antimicrobial resistance and genotyping of <italic>Pseudomonas aeruginosa</italic> isolated from the ear canals of dogs in Japan</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Elfadadny</surname>
<given-names>Ahmed</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1634283/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Uchiyama</surname>
<given-names>Jumpei</given-names>
</name>
<xref rid="aff3" ref-type="aff"><sup>3</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/93586/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Goto</surname>
<given-names>Kazuyoshi</given-names>
</name>
<xref rid="aff3" ref-type="aff"><sup>3</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2126875/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Imanishi</surname>
<given-names>Ichiro</given-names>
</name>
<xref rid="aff4" ref-type="aff"><sup>4</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1483406/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ragab</surname>
<given-names>Rokaia F.</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1637527/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Nageeb</surname>
<given-names>Wedad M.</given-names>
</name>
<xref rid="aff5" ref-type="aff"><sup>5</sup></xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Iyori</surname>
<given-names>Keita</given-names>
</name>
<xref rid="aff6" ref-type="aff"><sup>6</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/955578/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Toyoda</surname>
<given-names>Yoichi</given-names>
</name>
<xref rid="aff6" ref-type="aff"><sup>6</sup></xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Tsukui</surname>
<given-names>Toshihiro</given-names>
</name>
<xref rid="aff7" ref-type="aff"><sup>7</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2200180/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ide</surname>
<given-names>Kaori</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff8" ref-type="aff"><sup>8</sup></xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kawamoto</surname>
<given-names>Keiko</given-names>
</name>
<xref rid="aff9" ref-type="aff"><sup>9</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2098107/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Nishifuji</surname>
<given-names>Koji</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff8" ref-type="aff"><sup>8</sup></xref>
<xref rid="c001" ref-type="corresp"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1533795/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Laboratory of Internal Medicine, Cooperative Division of Veterinary Sciences, Graduate School of Agriculture, Tokyo University of Agriculture and Technology</institution>, <addr-line>Fuchu</addr-line>, <country>Japan</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Animal Internal Medicine, Faculty of Veterinary Medicine, Damanhour University</institution>, <addr-line>Damanhour</addr-line>, <country>Egypt</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Bacteriology, Graduate School of Medicine Dentistry and Pharmaceutical Sciences, Okayama University</institution>, <addr-line>Okayama</addr-line>, <country>Japan</country></aff>
<aff id="aff4"><sup>4</sup><institution>Department of Microbiology, Kitasato University School of Medicine</institution>, <addr-line>Sagamihara</addr-line>, <country>Japan</country></aff>
<aff id="aff5"><sup>5</sup><institution>Department of Medical Microbiology and Immunology, Faculty of Medicine, Suez Canal University</institution>, <addr-line>Ismailia</addr-line>, <country>Egypt</country></aff>
<aff id="aff6"><sup>6</sup><institution>Dermatological and Laboratory Service for Animals, Vet Derm Tokyo</institution>, <addr-line>Fujisawa</addr-line>, <country>Japan</country></aff>
<aff id="aff7"><sup>7</sup><institution>Zenoaq Co. Ltd.</institution>, <addr-line>Koriyama</addr-line>, <country>Japan</country></aff>
<aff id="aff8"><sup>8</sup><institution>Division of Animal Life Science, Institute of Agriculture, Graduate School, Tokyo University of Agriculture and Technology</institution>, <addr-line>Fuchu</addr-line>, <country>Japan</country></aff>
<aff id="aff9"><sup>9</sup><institution>Laboratory of Immunology and Infection Control, Department of Veterinary Medicine, School of Veterinary Medicine, Azabu University</institution>, <addr-line>Sagamihara</addr-line>, <country>Japan</country></aff>
<author-notes>
<fn id="fn0001" fn-type="edited-by">
<p>Edited by: Mihai Mares, Iasi University of Life Sciences, Romania</p>
</fn>
<fn id="fn0002" fn-type="edited-by">
<p>Reviewed by: Yasmine Hasanine Tartor, Zagazig University, Egypt; Monia Cocchi, Experimental Zooprophylactic Institute of the Venezie (IZSVe), Italy</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Koji Nishifuji, <email>kojimail@cc.tuat.ac.jp</email></corresp>
</author-notes>
<pub-date pub-type="epub">
<day>20</day>
<month>07</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>10</volume>
<elocation-id>1074127</elocation-id>
<history>
<date date-type="received">
<day>19</day>
<month>10</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>22</day>
<month>05</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2023 Elfadadny, Uchiyama, Goto, Imanishi, Ragab, Nageeb, Iyori, Toyoda, Tsukui, Ide, Kawamoto and Nishifuji.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Elfadadny, Uchiyama, Goto, Imanishi, Ragab, Nageeb, Iyori, Toyoda, Tsukui, Ide, Kawamoto and Nishifuji</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The strong bond between dogs and their owners creates a close association that could result in the transfer of antibiotic-resistant bacteria from canines to humans, potentially leading to the spread of antimicrobial resistance genes. <italic>Pseudomonas aeruginosa</italic>, a common causative agent of persistent ear infections in dogs, is often resistant to multiple antibiotics. Assessing the antimicrobial resistance profile and genotype of <italic>P. aeruginosa</italic> is crucial for the appropriate use of veterinary pharmaceuticals. However, in recent years, few studies have been conducted on this bacterium in Japan. We determined the antimicrobial resistance profile and genotype of <italic>P. aeruginosa</italic> isolated from the ear canal of dogs in Japan in 2020. Analysis of antimicrobial resistance using disk diffusion tests indicated a high frequency of resistance to most antimicrobial agents. Particularly, 29 isolates from the ear canals of the 29 affected dogs (100%) were resistant to cefovecin, cefpodoxime, and florfenicol; however, they were susceptible to cefepime and piperacillin/tazobactam. Only 3.4, 10.3, and 10.3% of the isolates were resistant to ceftazidime, tobramycin, and gentamicin, respectively. Furthermore, upon analyzing the population structure using multilocus sequence typing, a considerably large clonal complex was not observed in the tested isolates. Three isolates, namely ST3881, ST1646, and ST532, were clonally related to the clinically isolated sequence types in Japan (such as ST1831, ST1413, ST1812, and ST1849), which is indicative of dog-to-human transmission. Considering the variation in antibiotic resistance compared to that reported by previous studies and the potential risk of dog-to-human transmission, we believe that the survey for antimicrobial resistance profile and population structure should be continued regularly. However, the prevalence of multidrug-resistant <italic>P. aeruginosa</italic> in dogs in Japan is not a crisis.</p>
</abstract>
<kwd-group>
<kwd>otitis</kwd>
<kwd>dog</kwd>
<kwd>antimicrobial resistance</kwd>
<kwd>multilocus sequence typing</kwd>
<kwd><italic>Pseudomonas aeruginosa</italic></kwd>
</kwd-group>
<counts>
<fig-count count="2"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="69"/>
<page-count count="10"/>
<word-count count="8384"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Veterinary Epidemiology and Economics</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="sec1" sec-type="intro">
<title>Introduction</title>
<p>Canine otitis is one of the most commonly reported issues under the dermatology section of veterinary hospitals (<xref ref-type="bibr" rid="ref1">1</xref>). It encompasses two common types: otitis externa, which refers to inflammation of the outer ear canal and pinna, and otitis media, which involves inflammation of the middle ear (<xref ref-type="bibr" rid="ref2">2</xref>, <xref ref-type="bibr" rid="ref3">3</xref>). In dogs, otitis externa occurs more commonly than otitis media. However, in certain cases, otitis externa can progress and penetrate the tympanic membrane, thereby spreading the infection to the middle ear and leading to otitis media (<xref ref-type="bibr" rid="ref2">2</xref>, <xref ref-type="bibr" rid="ref4">4</xref>). The major causes of canine otitis are the prolonged exposure of the canine to an etiological agent within its environment and/or the failure of the antimicrobial treatment in eliciting a response from the microbes, when the disease is complicated with bacterial strains (<xref ref-type="bibr" rid="ref4">4</xref>). Repeated episodes of inflammation can cause severe histopathological changes in the ear canal. These changes include epithelial and glandular hyperplasia, calcification, and increased cerumen production along the external ear canal, which can lead to further failure of otitis treatment and potentially result in end-stage ear infection (<xref ref-type="bibr" rid="ref5">5</xref>).</p>
<p>Canine otitis also has a detrimental effect on the owner&#x2019;s quality of life (<xref ref-type="bibr" rid="ref6">6</xref>). The prevalence of otitis cases that are diagnosed in clinical veterinary practice ranges from 8.7 to 20% for otitis externa (<xref ref-type="bibr" rid="ref7 ref8 ref9">7&#x2013;9</xref>) and 50 to 80% for otitis media, as a complication to external otitis (<xref ref-type="bibr" rid="ref10">10</xref>). In a one-year-prevalence study conducted in the United Kingdom, the prevalence of otitis was notably higher in certain canine species, such as Basset Hound (28.81%), Chinese Shar Pie (17.76%), Labradoodle (17.71%), Beagles (14.72%) Golden Retrievers (14.11%), and Cockapoo (12.97%) (<xref ref-type="bibr" rid="ref11">11</xref>). In Japan, the incidence of otitis in dogs admitted to the animal hospital in Osaka prefecture was primarily confined to miniature poodles and cocker spaniel dogs (<xref ref-type="bibr" rid="ref12">12</xref>). The incidence of otitis in a specific species has been attributed to the anatomical confirmation of the ear pinnae and ear canal (<xref ref-type="bibr" rid="ref13">13</xref>). In a previous study (<xref ref-type="bibr" rid="ref11">11</xref>), the incidence odds of otitis were 1.76 and 1.84 times in the breeds with pendulous and V-shaped drop pinnae, respectively, compared to that in breeds with the erect-shaped ear. These results suggested that the retention of heat and moisture, as well as accumulation of foreign materials in pendulous and V-shaped drop pinnae may provide a favorable environment for bacterial colonization (<xref ref-type="bibr" rid="ref14">14</xref>, <xref ref-type="bibr" rid="ref15">15</xref>). Canine otitis is driven by secondary bacterial pathogens in 98% of the cases in North America (<xref ref-type="bibr" rid="ref16">16</xref>, <xref ref-type="bibr" rid="ref17">17</xref>), especially coagulase-positive <italic>Staphylococcus</italic> species, <italic>Pseudomonas</italic>, <italic>Proteus</italic>, <italic>Escherichia coli</italic>, <italic>Klebsiella</italic>, and <italic>Malassezia</italic> species, and mixed infections are common (<xref ref-type="bibr" rid="ref10">10</xref>, <xref ref-type="bibr" rid="ref18">18</xref>). The major organisms isolated from dogs suffering from otitis are <italic>Staphylococcus</italic> spp., especially <italic>S. pseudintermedius</italic>, which account for 10&#x2013;70% of cases (<xref ref-type="bibr" rid="ref19">19</xref>). <italic>Pseudomonas aeruginosa</italic> is the second major otitis pathogen, which accounts for 20&#x2013;60% of cases and can cause intractable otitis (<xref ref-type="bibr" rid="ref4">4</xref>, <xref ref-type="bibr" rid="ref19 ref20 ref21">19&#x2013;21</xref>). The canine otitis caused by <italic>P. aeruginosa</italic> is challenging to cure because of its biofilm formation and intrinsic and acquired drug resistance (<xref ref-type="bibr" rid="ref22">22</xref>).</p>
<p>Previous studies have demonstrated that the extensive utilization of antimicrobial agents in pets, especially in dogs and cats, may pose a potential threat to public health because of the likelihood of such pets serving as a means for the spread of antimicrobial-resistant bacteria and elements (<xref ref-type="bibr" rid="ref23">23</xref>). A study demonstrated that the resistance of <italic>P. aeruginosa</italic> to antimicrobials includes not only penicillin, aminoglycosides, and fluoroquinolones groups (<xref ref-type="bibr" rid="ref24">24</xref>), but also recently formulated drugs, such as ceftolozone-tazobactam and ceftazidime-avibactam (<xref ref-type="bibr" rid="ref25">25</xref>, <xref ref-type="bibr" rid="ref26">26</xref>). Such antimicrobial resistance leads to challenges in the treatment of otitis caused by <italic>P. aeruginosa</italic> in dogs in the clinical setting (<xref ref-type="bibr" rid="ref27">27</xref>). Thus, studies are required to monitor the efficacy of drugs used in dogs infected by <italic>P. aeruginosa</italic> to maintain the potential of a critical therapeutic agent and develop an effective management plan for the long run (<xref ref-type="bibr" rid="ref28">28</xref>, <xref ref-type="bibr" rid="ref29">29</xref>). Several molecular typing techniques have been used to type <italic>P. aeruginosa</italic> strains, such as pulsed-field gel electrophoresis (<xref ref-type="bibr" rid="ref30">30</xref>), polymerase chain reaction (PCR) fingerprinting (<xref ref-type="bibr" rid="ref31">31</xref>), and multilocus sequence typing (MLST) (<xref ref-type="bibr" rid="ref32">32</xref>). Among these techniques, MLST was developed in 2004 for <italic>P. aeruginosa</italic>, and this method is based on the sequencing of the allelic difference of seven housekeeping genes, which collectively provide the sequence types (STs) to characterize isolates. The selection of the seven loci allows scientists to track variability among strains such that one can be different in one or more loci and still be included in the global clonal history of the species with the highest possible accuracy (<xref ref-type="bibr" rid="ref32">32</xref>, <xref ref-type="bibr" rid="ref33">33</xref>).</p>
<p>The One Health Perspective approach links the safety and health of humans with that of their surroundings (<xref ref-type="bibr" rid="ref34">34</xref>), and this approach has recently raised the consideration of a survey for antimicrobial drug&#x2013;resistant bacteria in small animals (<xref ref-type="bibr" rid="ref35">35</xref>). The close contact between pets and humans offers excellent opportunities for the interspecies transmission of resistant bacteria in either direction, such as through licking, petting, and physical injuries. In contrast to other diseases, the horizontal transmission of antimicrobial resistance genes could occur either in the human host and/or environment. For example, <italic>P. aeruginosa</italic> bacterium of dogs and humans can meet outside their hosts and allow the transfer of resistance genes (<xref ref-type="bibr" rid="ref23">23</xref>). In comparison to food-borne zoonoses, pet-associated zoonoses remain a neglected area globally. A few epidemiological studies on the antimicrobial resistance profile of <italic>P. aeruginosa</italic> in companion animals have been conducted in Japan (<xref ref-type="bibr" rid="ref36">36</xref>, <xref ref-type="bibr" rid="ref37">37</xref>). Despite the importance of conducting a continuous survey on this topic, which should involve a large number of antibiotics, there has been a scarcity of studies in recent years. Our study investigated the antimicrobial resistance profile and genotype structure of <italic>P. aeruginosa</italic> isolated from ear canals of dogs in Japan during the year 2020, to determine their genetic relationship to other <italic>P. aeruginosa</italic> clones circulating in Japan.</p>
</sec>
<sec id="sec2" sec-type="materials|methods">
<title>Materials and methods</title>
<sec id="sec3">
<title>Animals and bacterial isolation</title>
<p>The samples were collected using sterile swabs from the ear canals of 29 dogs affected by unilateral and/or bilateral otitis, which were diagnosed from January to December 2020 by local veterinarians in Japan. The swabs were transported to VDT Co. Ltd. after being placed in the Stuart transport medium (Copan Diagnostics Inc., United States). Furthermore, the swabs were immediately smeared onto cetrimide agar (Wako, Fujifilm, Japan), a selective media for <italic>P. aeruginosa</italic> species identification, and incubated overnight at 35&#x2013;37&#x00B0;C. The isolated bacteria were identified using a Microflex system (Bruker Daltonics, Bremen, Germany). The protein profile of each bacterium was analyzed using the matrix-assisted laser desorption ionization (MALDI) Biotyper v3.1.</p>
<p>The signalment information of dogs, including breed, age, and sex is listed in <xref rid="tab1" ref-type="table">Table 1</xref>. The Biosafety Management Committee of the Tokyo University of Agriculture and Technology reviewed and approved all experiments using <italic>P. aeruginosa</italic> strains (#R2-10).</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Signalment information of 29 <italic>Pseudomonas aeruginosa</italic> isolates obtained from the ear canals of dogs in Japan.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="center" valign="top">Strain ID</th>
<th align="center" valign="top">Date of sampling<sup>a</sup></th>
<th align="center" valign="top">Breed</th>
<th align="center" valign="top">Sex<sup>b</sup></th>
<th align="center" valign="top">Age (year)</th>
<th align="center" valign="top">Previous antibiotic use<sup>c</sup></th>
<th align="center" valign="top">Resistance profile</th>
<th align="center" valign="top">Susceptibility pattern<sup>d</sup></th>
<th align="center" valign="top">STs</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">PA 22861</td>
<td align="left" valign="middle">01/07/2020</td>
<td align="left" valign="middle">Cavalier King Charles Spaniel</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="middle">7</td>
<td align="left" valign="middle">GM</td>
<td align="left" valign="middle">CPDX, CFV, AZT, FRM, AMK, LVLX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">3881</td>
</tr>
<tr>
<td align="left" valign="middle">PA 23303</td>
<td align="left" valign="middle">01/21/2020</td>
<td align="left" valign="middle">Border Collie</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="middle">6</td>
<td align="left" valign="middle">GM, FF</td>
<td align="left" valign="middle">CPDX, CFV, AZT, AMK, CIP, LVLX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">3882</td>
</tr>
<tr>
<td align="left" valign="middle">PA 23405</td>
<td align="left" valign="middle">01/25/2020</td>
<td align="left" valign="middle">Yorkshire terrier</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="middle">7</td>
<td align="left" valign="middle">ERFX, DOXY</td>
<td align="left" valign="middle">CAZ, CPDX, CFV, AZT, IPM, GM, FRM, AMK, CIP, OFLX, LFLX, LVLX, OBFX, ERFX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">3883</td>
</tr>
<tr>
<td align="left" valign="middle">PA 23824</td>
<td align="left" valign="middle">02/10/2020</td>
<td align="left" valign="middle">Toy poodle</td>
<td align="left" valign="middle">M</td>
<td align="center" valign="middle">7</td>
<td align="left" valign="middle">CEX, FF</td>
<td align="left" valign="middle">CPDX, CFV, AMK, CIP, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">643</td>
</tr>
<tr>
<td align="left" valign="middle">PA 23943</td>
<td align="left" valign="middle">02/13/2020</td>
<td align="left" valign="middle">Petit Basset Griffon Vendeen</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="middle">6</td>
<td align="left" valign="middle">none</td>
<td align="left" valign="middle">CPDX, CFV, CIP, FF</td>
<td align="left" valign="middle">MDR</td>
<td align="center" valign="middle">654</td>
</tr>
<tr>
<td align="left" valign="middle">PA 24223</td>
<td align="left" valign="middle">02/21/2020</td>
<td align="left" valign="middle">Golden retriever</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="middle">4</td>
<td align="left" valign="middle">none</td>
<td align="left" valign="middle">CPDX, CFV, AZT, AMK, CIP, LVLX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">3884</td>
</tr>
<tr>
<td align="left" valign="middle">PA 24374</td>
<td align="left" valign="middle">02/26/2020</td>
<td align="left" valign="middle">Labrador Retriever</td>
<td align="left" valign="middle">SF</td>
<td align="center" valign="middle">8</td>
<td align="left" valign="middle">none</td>
<td align="left" valign="middle">CPDX, CFV, CIP, FF</td>
<td align="left" valign="middle">MDR</td>
<td align="center" valign="middle">2291</td>
</tr>
<tr>
<td align="left" valign="middle">PA 24608</td>
<td align="left" valign="middle">03/04/2020</td>
<td align="left" valign="middle">Basset hound</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="middle">8</td>
<td align="left" valign="middle">none</td>
<td align="left" valign="middle">CPDX, CFV, CIP, FF</td>
<td align="left" valign="middle">MDR</td>
<td align="center" valign="middle">645</td>
</tr>
<tr>
<td align="left" valign="middle">PA 24667</td>
<td align="left" valign="middle">03/06/2020</td>
<td align="left" valign="middle">Frenchi Bulldog</td>
<td align="left" valign="middle">SF</td>
<td align="center" valign="middle">7</td>
<td align="left" valign="middle">FOM</td>
<td align="left" valign="middle">CPDX, CFV, AZT, AMK, CIP, OFLX, LFLX, LVLX, OBFX, ERFX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">1153</td>
</tr>
<tr>
<td align="left" valign="middle">PA 25065</td>
<td align="left" valign="middle">03/18/2020</td>
<td align="left" valign="middle">Japanese spaniel</td>
<td align="left" valign="middle">SF</td>
<td align="center" valign="middle">12</td>
<td align="left" valign="middle">AMPC, MINO</td>
<td align="left" valign="middle">CPDX, CFV, FF</td>
<td align="left" valign="middle">non-MDR</td>
<td align="center" valign="middle">1741</td>
</tr>
<tr>
<td align="left" valign="middle">PA 25268</td>
<td align="left" valign="middle">03/21/2020</td>
<td align="left" valign="middle">Standard poodle</td>
<td align="left" valign="middle">SF</td>
<td align="center" valign="middle">9</td>
<td align="left" valign="middle">none</td>
<td align="left" valign="middle">CPDX, CFV, AZT, AMK, LVLX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">1790</td>
</tr>
<tr>
<td align="left" valign="middle">PA 27532</td>
<td align="left" valign="middle">05/17/2020</td>
<td align="left" valign="middle">Clumber spaniel</td>
<td align="left" valign="middle">M</td>
<td align="center" valign="middle">12</td>
<td align="left" valign="middle">MEPM, FRPM</td>
<td align="left" valign="middle">CPDX, CFV, AZT, AMK, CIP, OFLX, LFLX, LVLX, OBFX, ERFX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">1646</td>
</tr>
<tr>
<td align="left" valign="middle">PA 27567</td>
<td align="left" valign="middle">06/07/2020</td>
<td align="left" valign="middle">Boston terrier</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="middle">13</td>
<td align="left" valign="middle">none</td>
<td align="left" valign="middle">CPDX, CFV, CIP, LVLX, FF</td>
<td align="left" valign="middle">MDR</td>
<td align="center" valign="middle">3885</td>
</tr>
<tr>
<td align="left" valign="middle">PA 27976</td>
<td align="left" valign="middle">06/08/2020</td>
<td align="left" valign="middle">Giant Schnauzer</td>
<td align="left" valign="middle">F</td>
<td align="center" valign="middle">5</td>
<td align="left" valign="middle">OBFX</td>
<td align="left" valign="middle">CPDX, CFV, FF</td>
<td align="left" valign="middle">non-MDR</td>
<td align="center" valign="middle">2839</td>
</tr>
<tr>
<td align="left" valign="middle">PA 30241</td>
<td align="left" valign="middle">06/19/2020</td>
<td align="left" valign="middle">Chihuahua</td>
<td align="left" valign="middle">SF</td>
<td align="center" valign="middle">8</td>
<td align="left" valign="middle">ERFX</td>
<td align="left" valign="middle">CPDX, CFV, AMK, CIP, LVLX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">377</td>
</tr>
<tr>
<td align="left" valign="middle">PA 30323</td>
<td align="left" valign="middle">08/16/2020</td>
<td align="left" valign="middle">Cavalier King Charles Spaniel</td>
<td align="left" valign="middle">SF</td>
<td align="center" valign="middle">12</td>
<td align="left" valign="middle">none</td>
<td align="left" valign="middle">CPDX, CFV, AZT, FRM, AMK, CIP, OFLX, LFLX, LVLX, OBFX, ERF, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">1153</td>
</tr>
<tr>
<td align="left" valign="middle">PA 30580</td>
<td align="left" valign="middle">08/12/2020</td>
<td align="left" valign="middle">Shiba inu</td>
<td align="left" valign="middle">M</td>
<td align="center" valign="middle">12</td>
<td align="left" valign="middle">CIP</td>
<td align="left" valign="middle">CPDX, CFV, FRM, CIP, LVLX, LFLX, OBFX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">313</td>
</tr>
<tr>
<td align="left" valign="middle">PA 32450</td>
<td align="left" valign="middle">08/18/2020</td>
<td align="left" valign="middle">Shiba inu</td>
<td align="left" valign="middle">M</td>
<td align="center" valign="middle">11</td>
<td align="left" valign="middle">none</td>
<td align="left" valign="middle">CPDX, CFV, AZT, CIP, LVLX, OBFX, FF</td>
<td align="left" valign="middle">MDR</td>
<td align="center" valign="middle">3005</td>
</tr>
<tr>
<td align="left" valign="middle">PA 33146</td>
<td align="left" valign="middle">10/03/2020</td>
<td align="left" valign="middle">Miniature Schnauzer</td>
<td align="left" valign="middle">M</td>
<td align="center" valign="middle">12</td>
<td align="left" valign="middle">OBFX</td>
<td align="left" valign="middle">CPDX, CFV, AZT, AMK, CIP, LVLX, OBFX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">2473</td>
</tr>
<tr>
<td align="left" valign="middle">PA 33343</td>
<td align="left" valign="middle">10/19/2020</td>
<td align="left" valign="middle">Miniature dachshund</td>
<td align="left" valign="middle">F</td>
<td align="center" valign="middle">5</td>
<td align="left" valign="middle">AMPC/CVA</td>
<td align="left" valign="middle">CPDX, CFV, AZT, AMK, CIP, LVLX, OBFX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">2884</td>
</tr>
<tr>
<td align="left" valign="middle">PA 33427</td>
<td align="left" valign="middle">10/22/2020</td>
<td align="left" valign="middle">Maltese</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="middle">11</td>
<td align="left" valign="middle">CEX</td>
<td align="left" valign="middle">CPDX, CFV, CIP, LFLX, OBFX, ERFX, FF</td>
<td align="left" valign="middle">MDR</td>
<td align="center" valign="middle">266</td>
</tr>
<tr>
<td align="left" valign="middle">PA 33543</td>
<td align="left" valign="middle">10/23/2020</td>
<td align="left" valign="middle">Yorkshire terrier</td>
<td align="left" valign="middle">F</td>
<td align="center" valign="middle">6</td>
<td align="left" valign="middle">OFLX, ABPC</td>
<td align="left" valign="middle">CPDX, CFV, CIP, OBFX, ERFX, FF</td>
<td align="left" valign="middle">MDR</td>
<td align="center" valign="middle">560</td>
</tr>
<tr>
<td align="left" valign="middle">PA 33568</td>
<td align="left" valign="middle">10/28/2020</td>
<td align="left" valign="middle">Mixbreed</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="middle">17</td>
<td align="left" valign="middle">CEF</td>
<td align="left" valign="middle">CPDX, CFV, CIP OBFX, ERFX, FF</td>
<td align="left" valign="middle">MDR</td>
<td align="center" valign="middle">505</td>
</tr>
<tr>
<td align="left" valign="middle">PA 33599</td>
<td align="left" valign="middle">10/27/2020</td>
<td align="left" valign="middle">Bernese Mountain Dog</td>
<td align="left" valign="middle">F</td>
<td align="center" valign="middle">4</td>
<td align="left" valign="middle">LVFX</td>
<td align="left" valign="middle">CPDX, CFV, AZT, AMK, CIP, ERFX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">2839</td>
</tr>
<tr>
<td align="left" valign="middle">PA 33670</td>
<td align="left" valign="middle">10/29/2020</td>
<td align="left" valign="middle">Beagle</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="middle">6</td>
<td align="left" valign="middle">OBFX, CEX</td>
<td align="left" valign="middle">CPDX, CFV, AZT, TOB, AMK, CIP, OFLX, LFLX, LVLX, OBFX, ERFX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">27</td>
</tr>
<tr>
<td align="left" valign="middle">PA 34383</td>
<td align="left" valign="middle">10/31/2020</td>
<td align="left" valign="middle">German Shepherd Dog</td>
<td align="left" valign="middle">M</td>
<td align="center" valign="middle">2</td>
<td align="left" valign="middle">none</td>
<td align="left" valign="middle">CPDX, CFV, AZT, MEM, GM, TOB, FRM, AMK, CIP, OFLX, LFLX, LVLX, OBFX, ERFX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">3886</td>
</tr>
<tr>
<td align="left" valign="middle">PA 34599</td>
<td align="left" valign="middle">11/18/2020</td>
<td align="left" valign="middle">Golden retriever</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="middle">6</td>
<td align="left" valign="middle">none</td>
<td align="left" valign="middle">CPDX, CFV, AZT, TOB, AMK, CIP, LVLX, FF</td>
<td align="left" valign="middle">XDR</td>
<td align="center" valign="middle">532</td>
</tr>
<tr>
<td align="left" valign="middle">PA 35113</td>
<td align="left" valign="middle">11/23/2020</td>
<td align="left" valign="middle">Toy poodle</td>
<td align="left" valign="middle">CM</td>
<td align="center" valign="top">3</td>
<td align="left" valign="top">none</td>
<td align="left" valign="top">CPDX, CFV, AZT, CIP, LVLX, OBFX, ERFX, FF</td>
<td align="left" valign="top">MDR</td>
<td align="center" valign="top">3887</td>
</tr>
<tr>
<td align="left" valign="top">PA 35671</td>
<td align="left" valign="top">12/05/2020</td>
<td align="left" valign="top">Standard poodle</td>
<td align="left" valign="top">CM</td>
<td align="center" valign="top">13</td>
<td align="left" valign="top">FF, CEX</td>
<td align="left" valign="top">CPDX, CFV, CIP, OFLX, LFLX, LVLX, OBFX, ERFX, FF</td>
<td align="left" valign="top">MDR</td>
<td align="center" valign="top">3888</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><sup>a</sup>mm/dd/yyyy.</p>
<p><sup>b</sup>CM, Castrated male; M, Male; F, Female; SF; spayed female.</p>
<p><sup>c</sup>GM, Gentamicin; FF, Florfenicol; ERFX, Enrofloxacin, DOXY, Doxycycline; CEX, Cefalexin, FOM, Formycin; MINO, Minocycline; OBFX, Orbifloxacin; CIP, Ciprofloxacin; AMPC/CVA, Ampicillin/clavulanic acid; OFLX, Ofloxacin; ABPC; Amoxicillin; CEF, Cefovecin; LVFX, Levofloxacin; COL, colistin; CAZ, ceftazidime; CPDX, cefpodoxime; CFV, cefovecin; AZT, aztreonam; PIP/TAZ, piperacillin-tazobactam; IPM, imipenem; MEM, meropenem; TOB, tobramycin, FRM, fardiomycin; AMK, amikacin; OFLX, ofloxacin; LFLX, lomefloxacin.</p>
<p><sup>d</sup>MDR, multidrug-resistant; XDR, extensively drug-resistant.</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="sec4">
<title>Antimicrobial susceptibility test</title>
<p>The antibiotic susceptibility test was performed using the disk diffusion and minimum inhibitory concentration (MIC) methods, based on the Clinical and Laboratory Standards Institute guidelines (CLSI) for Vet-08 and M-100-30<sup>th</sup>ED (<xref ref-type="bibr" rid="ref38">38</xref>). Briefly, the test was carried out using BD sensei-Disk of the designated antibiotic drug (agar diffusion test; Kirby&#x2013;Bauer disk diffusion method) on bacteria-inoculated M&#x00FC;ller&#x2013;Hinton Agar (Becton Dickinson GmbH, Heidelberg, Germany). We analyzed the antimicrobial resistance patterns of <italic>P. aeruginosa</italic> isolates using a panel of 20 antibiotics, which could be categorized into six types based on their mode of action, including fluoroquinolones, aminoglycoside, cephalosporins, carbapenems, piperacillin-tazobactam, and polymyxin. The following antibiotics were used: colistin (COL), ceftazidime (CAZ), cefpodoxime (CPDX), cefovecin (CFV), cefepime (CFPM), aztreonam (AZT), piperacillin-tazobactam (PIP/TAZ), imipenem (IPM), meropenem (MEM), gentamicin (GM), tobramycin (TOB), fradiomycin (FRM), amikacin (AMK), ciprofloxacin (CIP), ofloxacin (OFLX), lomefloxacin (LFLX), levofloxacin (LVLX), orbifloxacin (OBFX), enrofloxacin (ERFX), and florfenicol (FF). The isolates were classified into three categories, namely susceptible, intermediate, and resistant, based on the breakpoints described by CSLI for Vet-08 and M-100-30th ED. The MIC of IPM, MEM, and COL were also determined against <italic>P. aeruginosa</italic> isolates using the broth microdilution technique, according to the relevant CLSI guidelines. Based on criteria provided by previous classification (<xref ref-type="bibr" rid="ref39">39</xref>), the classification of the <italic>P. aeruginosa</italic> isolate as either multidrug-resistant (MDR), extensively drug-resistant (XDR), pan-drug resistant (PDR), or non-MDR (non-multidrug resistant) was based on its susceptibility to various antimicrobial agents. Specifically, an isolate was deemed MDR if it showed resistance to at least one agent in three or more antimicrobial categories. Conversely, an isolate was classified as XDR if it was susceptible to at least one agent in two or fewer categories. An isolate was labeled as PDR if it was resistant to all available antimicrobials. Finally, an isolate was considered non-MDR if it did not meet the criteria for MDR classification (<xref ref-type="bibr" rid="ref39">39</xref>).</p>
</sec>
<sec id="sec5">
<title>Multilocus sequence typing analysis</title>
<p>The bacterial DNA was extracted using the Kaneka Easy DNA Extraction Kit (Version 2, Kaneka, Tokyo, Japan). The extracted DNA was purified using a Wizard Genomic DNA Purification kit (Promega, Tokyo, Japan). The sequences for the seven housekeeping genes <italic>acsA</italic>, <italic>aroE</italic>, <italic>guaA</italic>, <italic>mutL</italic>, <italic>nuoD</italic>, <italic>ppsA</italic>, and <italic>trpE</italic> of <italic>P. aeruginosa</italic> were amplified <italic>via</italic> PCR using appropriate primer sets (<xref ref-type="bibr" rid="ref32">32</xref>). The PCR product was sequenced with a Big Dye Terminator 3.1&#x2009;Cycle Sequencing Kit using an ABI 3100 genetic analyzer (Applied Biosystems).</p>
<p>The allelic number and ST were determined using the MLST database.<xref rid="fn0003" ref-type="fn"><sup>1</sup></xref> If no matches were found in the database, STs were newly registered to the database (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>). For phylogenetic analysis, the concatenated sequences of the seven housekeeping genes of all STs for <italic>P. aeruginosa</italic> (including the STs of the current study) were downloaded from the MLST website.<xref rid="fn0004" ref-type="fn"><sup>2</sup></xref> The sequences were aligned using Multiple Sequence Comparison by Log-Expectation, and the phylogenetic tree was generated by the neighbor-joining method, using MEGA software version 10.2.4. The tree was visualized by the online iTOL software version 6.1.1.<xref rid="fn0005" ref-type="fn"><sup>3</sup></xref></p>
</sec>
<sec id="sec6">
<title>Data analysis</title>
<p>All data in the current study were statistically analyzed using a computer software. For detection of age prevalence in the affected dogs, data were checked by the Mann&#x2013;Whitney U test (GraphPad Software, Inc., San Diego, California). In all analyzes, <italic>p</italic>&#x2009;&#x003C;&#x2009;0.05 was considered statistically significant. To avoid any discrepancy in the results of the antimicrobial resistance profile of each isolate, all disk diffusion and MIC tests were performed in triplicate. The genotype structure of <italic>P. aeruginosa</italic> isolates was analyzed by the goeBURST algorithmic method using PHYLOViZ v2.0 software (<xref ref-type="bibr" rid="ref40">40</xref>).<xref rid="fn0006" ref-type="fn"><sup>4</sup></xref> The clonal relatedness among the STs of the 29 clinical isolates was checked based on their allelic number. STs were categorized into the same group if they had mutually identical alleles at six of the seven loci with one other member of the group. Conversely, the STs that did not share identical alleles in at least two out of seven loci were considered singleton STs. Using the iTOL software version 6.1.1 (see footnote 3), a heatmap with hierarchical clustering was created to show the overall distribution of antibiotic resistance phenotypes in the isolates.</p>
</sec>
</sec>
<sec id="sec7" sec-type="results">
<title>Results</title>
<sec id="sec8">
<title>Description of dog cohort for <italic>Pseudomonas aeruginosa</italic> isolation in this study</title>
<p>Information regarding the affected dogs with otitis is described in <xref rid="tab1" ref-type="table">Table 1</xref>. All 29 dogs included in the study were found to have 29 <italic>P. aeruginosa</italic> isolates (100%) in their ear canals. In this cohort, 65.5% (19/29) of dogs with otitis were male either intact (<italic>n</italic>&#x2009;=&#x2009;6) or castrated (<italic>n</italic>&#x2009;=&#x2009;13). No breed predisposition was observed for otitis. However, the incidence of the disease was significantly higher (Mann&#x2013;Whitney U test, <italic>p</italic>&#x2009;&#x003C;&#x2009;0.0001) in senior dogs (above 7&#x2009;years), who had reached the last quarter of their life expectancy as indicated in a previous study (<xref ref-type="bibr" rid="ref41">41</xref>), with a mean&#x2009;&#x00B1;&#x2009;standard deviation (SD) of 11.28&#x2009;&#x00B1;&#x2009;2.37 than in mature adult ones with a mean (&#x00B1;SD) of 5.57&#x2009;&#x00B1;&#x2009;1.39&#x2009;years old. In addition, 37.9% (11/29) of the dogs with otitis had been previously treated with fluoroquinolones.</p>
</sec>
<sec id="sec9">
<title>Antimicrobial susceptibility profile</title>
<p>The detailed number and percentage of frequency of susceptibility, intermediate susceptibility, and resistance toward each antimicrobial agent are expressed in <xref rid="tab2" ref-type="table">Table 2</xref>. All the isolates: <italic>n</italic>&#x2009;=&#x2009;29/29 (100%) expressed resistance phenotype toward CPDX, CFV, and FF. Additionally, the isolates of <italic>P. aeruginosa</italic> showed variable frequencies of resistance to the group of fluoroquinolones antibiotics CIP: <italic>n</italic>&#x2009;=&#x2009;25/29 (86.2%), ERFX: <italic>n</italic>&#x2009;=&#x2009;13/29 (44.8%), LVLX: <italic>n</italic>&#x2009;=&#x2009;19/29 (65.5%), OFLX: <italic>n</italic>&#x2009;=&#x2009;7/29 (24.1%), LFLX: <italic>n</italic>&#x2009;=&#x2009;9/29 (31%), and OBFX: <italic>n</italic>&#x2009;=&#x2009;16/29 (55.2%). In addition, <italic>P. aeruginosa</italic> isolates harbored resistance ranging from 10.3 to 55.1% toward the aminoglycoside group of antibiotics, such as GM: <italic>n</italic>&#x2009;=&#x2009;3/29 (10.3%), TOB: <italic>n</italic>&#x2009;=&#x2009;3/29 (10.3%), AMK: <italic>n</italic>&#x2009;=&#x2009;16/29 (55.2%), and FRM: <italic>n</italic>&#x2009;=&#x2009;5/29 (17.2%). In contrast, the isolates showed the lowest frequency of resistance toward cephalosporins CFPM: <italic>n</italic>&#x2009;=&#x2009;0/29 (0.0%) and CAZ: <italic>n</italic>&#x2009;=&#x2009;1/29 (3.4%) and PIP/TAZ: <italic>n</italic>&#x2009;=&#x2009;0/29 (0.0%) (<xref rid="fig1" ref-type="fig">Figure 1</xref>). The frequency of resistance toward carbapenems antibiotics was 3.4% for IPM and MEM. All isolates showed intermediate susceptibility to COL (<xref rid="tab3" ref-type="table">Table 3</xref>). Additionally, in terms of susceptibility to antimicrobials, 10/29 (34.5%) and 17/29 (58.6%) of <italic>P. aeruginosa</italic> isolates were classified as MDR and XDR, respectively, while 2/29 were non-MDR isolates. The antibiotic pattern and resistance profile for each isolate are shown in <xref rid="tab1" ref-type="table">Table 1</xref>.</p>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption>
<p>Antimicrobial susceptibility percentage (susceptible, intermediate, and resistant) of the 29 <italic>P. aeruginosa</italic> isolates obtained from the ear canals of dogs.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Antimicrobial agent</th>
<th align="center" valign="top">Disk concentration (&#x03BC;g)</th>
<th align="center" valign="top">Breakpoints (mm; &#x2264;S/I/R&#x003C;)<sup>a</sup></th>
<th align="center" valign="top">Number of susceptible isolates (%)</th>
<th align="center" valign="top">Number of Intermediate isolates (%)</th>
<th align="center" valign="top">Number of resistant isolates (%)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">Ceftazidime (CAZ)</td>
<td align="center" valign="middle">30</td>
<td align="center" valign="middle">18/15&#x2013;17/14</td>
<td align="char" valign="middle" char="(">27 (93.1)</td>
<td align="char" valign="middle" char="(">1 (3.4)</td>
<td align="char" valign="middle" char="(">1 (3.4)</td>
</tr>
<tr>
<td align="left" valign="middle">Cefpodoxime (CPDX)</td>
<td align="center" valign="middle">10</td>
<td align="center" valign="middle">21/18&#x2013;20/17</td>
<td align="char" valign="middle" char="(">0 (0.0)</td>
<td align="char" valign="middle" char="(">0 (0.0)</td>
<td align="char" valign="middle" char="(">29 (100)</td>
</tr>
<tr>
<td align="left" valign="middle">Cefovecin (CFV)</td>
<td align="center" valign="middle">10</td>
<td align="center" valign="middle">21/18&#x2013;20/17</td>
<td align="char" valign="middle" char="(">0 (0.0)</td>
<td align="char" valign="middle" char="(">0 (0.0)</td>
<td align="char" valign="middle" char="(">29 (100)</td>
</tr>
<tr>
<td align="left" valign="middle">Cefepime (CFPM)</td>
<td align="center" valign="middle">30</td>
<td align="center" valign="middle">18/15&#x2013;17/14</td>
<td align="char" valign="middle" char="(">27 (93.1)</td>
<td align="char" valign="middle" char="(">2 (6.9)</td>
<td align="char" valign="middle" char="(">0 (0.0)</td>
</tr>
<tr>
<td align="left" valign="middle">Aztreonam (AZT)</td>
<td align="center" valign="middle">30</td>
<td align="center" valign="middle">22/16&#x2013;21/15</td>
<td align="char" valign="middle" char="(">10 (34.5)</td>
<td align="char" valign="middle" char="(">3 (10.3)</td>
<td align="char" valign="middle" char="(">16 (55.2)</td>
</tr>
<tr>
<td align="left" valign="middle">Piperacillin-Tazobactam (PIP/TAZ)</td>
<td align="center" valign="middle">110</td>
<td align="center" valign="middle">21/15&#x2013;20/14</td>
<td align="char" valign="middle" char="(">25 (86.2)</td>
<td align="char" valign="middle" char="(">4 (13.8)</td>
<td align="char" valign="middle" char="(">0 (0.0)</td>
</tr>
<tr>
<td align="left" valign="middle">Gentamicin (GM)</td>
<td align="center" valign="middle">10</td>
<td align="center" valign="middle">15/13&#x2013;14/12</td>
<td align="char" valign="middle" char="(">26 (89.7)</td>
<td align="char" valign="middle" char="(">0 (0.0)</td>
<td align="char" valign="middle" char="(">3 (10.3)</td>
</tr>
<tr>
<td align="left" valign="middle">Tobramycin (TOB)</td>
<td align="center" valign="middle">10</td>
<td align="center" valign="middle">15/13&#x2013;14/12</td>
<td align="char" valign="middle" char="(">26 (89.7)</td>
<td align="char" valign="middle" char="(">1 (3.4)</td>
<td align="char" valign="middle" char="(">2 (6.9)</td>
</tr>
<tr>
<td align="left" valign="middle">Fradiomycin (FRM)</td>
<td align="center" valign="middle">10</td>
<td align="center" valign="middle">15/13&#x2013;14/12</td>
<td align="char" valign="middle" char="(">14 (48.3)</td>
<td align="char" valign="middle" char="(">10 (34.5)</td>
<td align="char" valign="middle" char="(">5 (17.2)</td>
</tr>
<tr>
<td align="left" valign="middle">Amikacin (AMK)</td>
<td align="center" valign="middle">30</td>
<td align="center" valign="middle">17/15&#x2013;16/14</td>
<td align="char" valign="middle" char="(">4 (13.8)</td>
<td align="char" valign="middle" char="(">9 (31)</td>
<td align="char" valign="middle" char="(">16 (55.2)</td>
</tr>
<tr>
<td align="left" valign="middle">Ciprofloxacin (CIP)</td>
<td align="center" valign="middle">5</td>
<td align="center" valign="middle">21/16&#x2013;20/15</td>
<td align="char" valign="middle" char="(">2 (6.9)</td>
<td align="char" valign="middle" char="(">2 (6.9)</td>
<td align="char" valign="middle" char="(">25 (86.2)</td>
</tr>
<tr>
<td align="left" valign="middle">Ofloxacin (OFLX)</td>
<td align="center" valign="middle">5</td>
<td align="center" valign="middle">16/13&#x2013;15/12</td>
<td align="char" valign="middle" char="(">21 (72.5)</td>
<td align="char" valign="middle" char="(">1 (3.4)</td>
<td align="char" valign="middle" char="(">7 (24.1)</td>
</tr>
<tr>
<td align="left" valign="middle">Lomefloxacin (LFLX)</td>
<td align="center" valign="middle">10</td>
<td align="center" valign="middle">22/19&#x2013;21/18</td>
<td align="char" valign="middle" char="(">13 (44.8)</td>
<td align="char" valign="middle" char="(">7 (24.1)</td>
<td align="char" valign="middle" char="(">9 (31)</td>
</tr>
<tr>
<td align="left" valign="middle">Levofloxacin (LVLX)</td>
<td align="center" valign="middle">5</td>
<td align="center" valign="middle">17/14&#x2013;16/13</td>
<td align="char" valign="middle" char="(">4 (13.9)</td>
<td align="char" valign="middle" char="(">6 (20.6)</td>
<td align="char" valign="middle" char="(">19 (65.5)</td>
</tr>
<tr>
<td align="left" valign="middle">Orbifloxacin (OBFX)</td>
<td align="center" valign="middle">10</td>
<td align="center" valign="middle">23/17&#x2013;22/16</td>
<td align="char" valign="middle" char="(">4 (13.9)</td>
<td align="char" valign="middle" char="(">9 (31)</td>
<td align="char" valign="middle" char="(">16 (55.2)</td>
</tr>
<tr>
<td align="left" valign="middle">Enrofloxacin (ERFX)</td>
<td align="center" valign="middle">10</td>
<td align="center" valign="middle">23/17&#x2013;22/16</td>
<td align="char" valign="middle" char="(">3 (10.3)</td>
<td align="char" valign="middle" char="(">13 (44.8)</td>
<td align="char" valign="middle" char="(">13 (44.8)</td>
</tr>
<tr>
<td align="left" valign="middle">Florfenicol (FF)</td>
<td align="center" valign="middle">30</td>
<td align="center" valign="middle">16/11&#x2013;15/10</td>
<td align="char" valign="middle" char="(">0 (0.0)</td>
<td align="char" valign="middle" char="(">0 (0.0)</td>
<td align="char" valign="middle" char="(">29 (100)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><sup>a</sup>S, susceptible; I, intermediate; R, resistant.</p>
</table-wrap-foot>
</table-wrap>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>Antimicrobial susceptibility pattern of the 29 isolates isolated from the ear canals of dogs. A rectangular neighbor-joining tree was constructed based on the MLST data of all isolates. A heat map representing the antimicrobial susceptibility profile for each strain was annotated to the phylogenetic tree. Antimicrobial tests for colistin (COL), ceftazidime (CAZ), cefpodoxime (CPDX), cefovecin (CFV), cefepime (CFPM), aztreonam (AZT), piperacillin-tazobactam (PIP/TAZ), imipenem (IPM), meropenem (MEM), gentamicin (GM), tobramycin (TOB), fardiomycin (FRM), amikacin (AMK), ciprofloxacin (CIP), ofloxacin (OFLX), lomefloxacin (LFLX), levofloxacin (LVLX), orbifloxacin (OBFX), enrofloxacin (EREX), and florfenicol (FF) were performed using the disk diffusion method and MIC test based on CSLI. The figure shows the resistance status of antimicrobials (red, resistant; pink, intermediate; blue, sensitive).</p>
</caption>
<graphic xlink:href="fvets-10-1074127-g001.tif"/>
</fig>
<table-wrap position="float" id="tab3">
<label>Table 3</label>
<caption>
<p>Minimum inhibitory concentration (MIC) for imipenem, meropenem, and colistin for the 29 <italic>P. aeruginosa</italic> isolates obtained from the ear canals of dogs.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top" rowspan="2">Antimicrobial agent</th>
<th align="center" valign="top" colspan="3">MIC breakpoints (&#x03BC;g/mL)</th>
<th align="center" valign="top" colspan="3">Results of MIC</th>
</tr>
<tr>
<th align="center" valign="top"><italic>S</italic></th>
<th align="center" valign="top"><italic>I</italic></th>
<th align="center" valign="top"><italic>R</italic></th>
<th align="center" valign="top">Susceptible strains (%)</th>
<th align="center" valign="top">Intermediate strains (%)</th>
<th align="center" valign="top">Resistant strains (%)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">Imipenem IPM</td>
<td align="center" valign="middle">&#x2264;2</td>
<td align="center" valign="middle">4</td>
<td align="center" valign="middle">&#x2265;8</td>
<td align="char" valign="middle" char="(">27 (93.1)</td>
<td align="char" valign="middle" char="(">1 (3.4)</td>
<td align="char" valign="middle" char="(">1 (3.4)</td>
</tr>
<tr>
<td align="left" valign="middle">Meropenem MEM</td>
<td align="center" valign="middle">&#x2264;2</td>
<td align="center" valign="middle">4</td>
<td align="center" valign="middle">&#x2265;8</td>
<td align="char" valign="middle" char="(">26 (89.7)</td>
<td align="char" valign="middle" char="(">2 (6.9)</td>
<td align="char" valign="middle" char="(">1 (3.4)</td>
</tr>
<tr>
<td align="left" valign="middle">Colistin COL</td>
<td align="center" valign="middle">-</td>
<td align="center" valign="middle">&#x2264;2</td>
<td align="center" valign="middle">&#x2265;4</td>
<td align="char" valign="middle" char="(">0 (0.0)</td>
<td align="char" valign="middle" char="(">29 (100)</td>
<td align="char" valign="middle" char="(">0 (0.0)</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="sec10">
<title>Clonal complexes distribution</title>
<p>Using the MLST analysis, 27 STs were identified among the 29 isolates from the ear canals of dogs affected with otitis. Two STs were assigned to four isolates: ST 1153 was assigned to PA 24667 and PA 30323 isolates, while ST2839 was assigned to PA 27976 and PA 33599 isolates. The same STs mean identical sequences in all housekeeping genes. Other STs were assigned for other isolates. We then analyzed the CCs using these STs. The present STs did not exhibit a CC formation among the isolated strains except for two groups clonally related by a single locus variant: ST313 with ST3882 and ST505 with ST3886. The remaining 25 STs were classified as singletons (<xref rid="fig2" ref-type="fig">Figure 2A</xref>), indicating the high genetic diversity between the isolates. The genetic relatedness of the strains isolated in this study with the STs prevalent in Japan was examined. A relationship was observed between two STs, ST3881 and ST1646, which are clonally related by a single locus variant to the previously identified ST1831 and ST1413 from Japan, respectively, while ST532 is the group founder of two Japanese STs, ST1812 and ST1849 (<xref rid="fig2" ref-type="fig">Figure 2A</xref>). Also, three previously identified human high-risk clones were identified in the current study: ST27, ST532, and ST654.</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>Population structure of <italic>Pseudomonas aeruginosa</italic> strains: <bold>(A)</bold> Genetic relatedness between all known sequence types (STs) and the canine <italic>P. aeruginosa</italic> STs identified in Japan. Three clonal complexes were displayed <italic>via</italic> single locus variant analysis using goeBURST software (orange rectangular). Gray bars represent all STs identified in this study from dogs. Green and blue (founder ST) bars indicate the STs identified in Japan based on the pubMLST database. <bold>(B)</bold> The phylogenetic tree represents the distribution of the STs identified in this study from dogs among all known STs from the pubMLST database. Red circles indicate the positions of STs in this study (red STs are new STs identified). No cluster formation was observed among the STs of <italic>P. aeruginosa</italic> isolated from dogs. Underlined STs represent the high-risk clones of <italic>P. aeruginosa</italic> identified from dog isolates in this study.</p>
</caption>
<graphic xlink:href="fvets-10-1074127-g002.tif"/>
</fig>
<p>The present study conducted a phylogenetic analysis using concatenated sequences of MLST alleles, which involved both the STs of this study and the entire MLST database as of the date of analysis. The circular tree obtained from this analysis indicates that the STs examined in our study display diversity and are dispersed among all known STs for the <italic>P. aeruginosa</italic> organism, without forming any distinct clusters. The results of this analysis are illustrated in <xref rid="fig2" ref-type="fig">Figure 2B</xref>. Furthermore, the heat map for antimicrobial susceptibility patterns was annotated to the rectangular phylogenetic tree of the STs to examine the dissemination of resistant phenotypes on the tree. The antibiotic resistance phenotypes (i.e., susceptible, intermediate, and resistant) were distributed in all clusters. The highly resistant strains did not vary meaningfully among clusters (<xref rid="fig1" ref-type="fig">Figure 1</xref>).</p>
</sec>
</sec>
<sec id="sec11" sec-type="discussions">
<title>Discussion</title>
<p>It has been reported in various countries that opportunistic infection causing agents, such as <italic>P. aeruginosa</italic> and other companion-animal-borne organisms, are developing antibiotic resistance (<xref ref-type="bibr" rid="ref42">42</xref>, <xref ref-type="bibr" rid="ref43">43</xref>). The spread of bacteria resistant to antibiotics from animals to people is a major public health concern, especially when those bacteria are resistant to antimicrobials used in human medicine (<xref ref-type="bibr" rid="ref23">23</xref>). The One Health approach emphasizes the necessity of <italic>P. aeruginosa</italic> antimicrobial resistance surveillance, particularly in human-animal-environment interactions. However, studies on continuous monitoring of antimicrobial patterns and the genetic characterization of <italic>P. aeruginosa</italic> isolates from dogs are limited in Japan. From the review of the frequency of resistance to the 20 antibiotics demonstrated in our study, we concluded that the therapeutic lines for these isolates are challenging. The high variation in resistance frequency toward commonly used veterinary antibiotics such as fluoroquinolones (ranging from 24.1 to 86.2%), makes choosing a suitable antimicrobial difficult, and this could be attributed to the discrepancy between different methods used for checking susceptibility (the disk diffusion test in our study). Nonetheless, when otitis associated with a <italic>P. aeruginosa</italic> infection is diagnosed, an antibiotic sensitivity test remains the reliable method for identifying and guiding the optimal treatment (<xref ref-type="bibr" rid="ref44">44</xref>). Compared to the scientific investigations on <italic>P. aeruginosa</italic> isolated from dogs, the antibiotic resistance profile was slightly higher in the isolates of the present study, with the appearance of a high frequency of MDR and XDR isolates (<xref ref-type="bibr" rid="ref36">36</xref>, <xref ref-type="bibr" rid="ref37">37</xref>). This increase in the number of isolated resistant strains in this study may be attributed to the well-recognized resistant and sometimes multi-resistant nature of the bacterium against the antibiotics commonly used in the veterinary field. Hence, the choice of antimicrobials to treat the disease in clinical settings is limited (<xref ref-type="bibr" rid="ref45">45</xref>). The overproduction of chromosomally encoded AmpC genes, the outer membrane porin OprD, and the multidrug efflux system are the predominant therapeutic challenges of this organism (<xref ref-type="bibr" rid="ref46">46</xref>). The phylogenetic tree showed that the antimicrobial resistance phenotypes are distributed among all strains without a significant cluster formation, indicating a weak resistance-related genetic association between the current isolates. Notably, two strains possess the same STs (ST2839 and ST1153) and are shown to have variable resistant rates to antibiotics. However, they possess a common susceptibility to CAZ, CFPM, GM, and TOB, suggesting the possible treatment of strains sharing identical genetic material.</p>
<p>Interestingly, the Infectious Diseases Control Law in Japan did not describe a carbapenem-resistant isolate of <italic>P. aeruginosa</italic> and MDR isolates originating from companion animals. However, the current study detected that 34.5 and 58.6% of <italic>P. aeruginosa</italic> isolates were classified as MDR and XDR, emphasizing the need for regular resistance investigation. The rates of GM and CAZ resistance in our study was 10.3, and 3.4%, respectively, and are similar to that reported previously against <italic>P. aeruginosa</italic> in dogs, which is 19.4 and 1.4%, respectively (<xref ref-type="bibr" rid="ref37">37</xref>, <xref ref-type="bibr" rid="ref47">47</xref>, <xref ref-type="bibr" rid="ref48">48</xref>). The CAZ, GM, PIP/TAZ, CFPM, and TOB retained bactericidal activity against the isolates from the ear canals of dogs.</p>
<p>Companion animals represent an insufficiently researched reservoir of <italic>P. aeruginosa</italic> strains that exhibit antimicrobial resistance. In instances of MDR-<italic>P. aeruginosa</italic> infections in humans, polymyxin (colistin) and carbapenems (imipenem and meropenem) are recognized as the ultimate therapeutic options (<xref ref-type="bibr" rid="ref49">49</xref>). In this study, we investigated the prevalence of resistant strains of <italic>P. aeruginosa</italic>, isolated from dogs in Japan, toward COL, IPM, and MEM using the MIC test, which is reliable and accurate for these antimicrobials. Our investigation revealed that all <italic>P. aeruginosa</italic> isolates exhibited intermediate susceptibility to colistin (COL). This finding emphasizes the need for continuous monitoring of isolated strains from companion animals in Japan. At the same time, the resistance toward carbapenems is also crucial. The carbapenems resistant isolates of <italic>P. aeruginosa</italic> have been detected by the MIC test and found to be 3.4% for IPM and MEM. The epidemiological investigation on the increase in the frequency of carbapenems resistance was seen to vary from 0.0% in 2003&#x2013;2010 (<xref ref-type="bibr" rid="ref37">37</xref>), 0.5% in 2014&#x2013;2015 (<xref ref-type="bibr" rid="ref36">36</xref>), 6.67% in 2017&#x2013;2018 (<xref ref-type="bibr" rid="ref50">50</xref>) to 3.4% in 2020 (the current study). In Japan, the carbapenem-resistant <italic>P. aeruginosa</italic> isolates from companion animals were found to fluctuate over time (<xref ref-type="bibr" rid="ref50">50</xref>), indicating that a continuous survey of carbapenem-resistant <italic>P. aeruginosa</italic> from the pets&#x2019; environment is necessary. Although the carbapenems resistance status in Japan is not a crisis as reported by the Japanese Veterinary Antimicrobial Resistance Monitoring (JVARM) system, recent scientific studies (<xref ref-type="bibr" rid="ref36">36</xref>, <xref ref-type="bibr" rid="ref37">37</xref>, <xref ref-type="bibr" rid="ref50">50</xref>) reported an increase in the carbapenem-resistant isolates from dogs and cats. However, the use of antimicrobials in Japan seems to be prudent, and this increase might be due to the prescriptions of such medicines by local drug suppliers, personnel importation of drugs, and the use of human antimicrobials in the treatment of companion animals, which are not monitored under the JVARM and are excluded from calculations (<xref ref-type="bibr" rid="ref51">51</xref>). These findings indicate that the veterinary niches, especially the dog-human interface, represent a potential reservoir of resistant <italic>P. aeruginosa</italic> for animals and humans. The use of COL in human medicine was relatively low owing to its neurotoxicity and nephrotoxicity (<xref ref-type="bibr" rid="ref52">52</xref>). However, in veterinary and human clinical practice, COL has been reintroduced to treat pathogens resistant to other available antimicrobials. The recommended treatment of otitis in dogs includes recognizing and managing the predisposing factors, ear cleaning, topical treatment, and systemic injection of antimicrobials (if necessary). Polymyxins, including COL, has been introduced in some countries as authorized active ingredients for topical ear application in canine otitis treatment (<xref ref-type="bibr" rid="ref43">43</xref>) and for intravenous treatment of food-producing animals and equine septicemia (<xref ref-type="bibr" rid="ref53">53</xref>, <xref ref-type="bibr" rid="ref54">54</xref>). Restriction on the use of COL, IPM, and MEM in the veterinary section is required for saving these antibiotics as the last lines of defense against MDR-<italic>P. aeruginosa</italic> in humans, especially cystic fibrosis (<xref ref-type="bibr" rid="ref49">49</xref>, <xref ref-type="bibr" rid="ref55">55</xref>).</p>
<p>The inappropriate use of antibiotics may induce an annual increase in antibiotic resistance, particularly for antibiotics considered crucial therapeutic agents for treating <italic>P. aeruginosa</italic> infections in humans. The high level of resistance toward fluoroquinolones (i.e., CIP and ERFX) among isolates that originated from dogs is alarming. The ERFX antibiotic is a potential therapeutic option for the treatment of many human diseases (<xref ref-type="bibr" rid="ref56">56</xref>). The Nippon AMR One Health Report<xref rid="fn0007" ref-type="fn"><sup>5</sup></xref> stated in 2021 that fluoroquinolones such as ERFX and OBFX have been used in a persistent amount (between 0.81 and 0.91 ton every year from 2013 to 2018) for treatment of dogs and cats. The amount of CIP used, which is an active metabolite of ERFX, cannot be measured because its prescription has been restricted for veterinarians in Japan. Thus, attention should be paid to monitoring the jumping of resistance to ERFX and CIP. Collectively, the isolated <italic>P. aeruginosa</italic> strains from dogs in the current study exhibited a high frequency of antibiotic resistance, yet CFPM, GM, TOB, PIP/TAZ, and CAZ possess the ability to kill the <italic>P. aeruginosa</italic> isolated from the ear canal of affected dogs. A widely utilized approach to preserve susceptibility to these therapeutic agents for clinical purposes is combining phage therapy with alternative antimicrobial methods, such as phage-antibiotic synergy. This method is particularly effective against drug-resistant bacteria (<xref ref-type="bibr" rid="ref57">57</xref>).</p>
<p>Notably, animals, particularly companion animals have been recognized as potential reservoirs of multidrug-resistant bacteria and resistance genes that can be transmitted to humans (<xref ref-type="bibr" rid="ref58 ref59 ref60">58&#x2013;60</xref>). The genetic analysis of <italic>P. aeruginosa</italic> isolates from dogs provides important information about the geographical distribution of these isolates in the veterinary community related to humans (<xref ref-type="bibr" rid="ref59">59</xref>). In the present study, three previously identified human high-risk clones (ST532, ST27, and ST654) were identified from the isolates of infected dogs in this study, which represent their ability to colonize in different niches including the animal environment, and is indicative of a possible zoonotic transmission to humans (<xref ref-type="bibr" rid="ref61">61</xref>). We chose the MLST technique for our study to easily distinguish the strains of <italic>P. aeruginosa</italic> and compare STs recovered from dogs with that circulating in the same geographical area, i.e., Japan. Our study supports the nonclonal epidemic structure of <italic>P. aeruginosa</italic> strains (<xref ref-type="bibr" rid="ref62 ref63 ref64">62&#x2013;64</xref>), whereas the genetic relatedness between some clones isolated from dogs (i.e., ST3881, ST1646, and ST532) and the Japanese STs isolated from wounds and urinary tract infections in humans (i.e., ST1831, ST1413, ST1812, and ST1849) support the theory of horizontal transmission of <italic>P. aeruginosa</italic> from dog to human. Previous studies have reported MDR-<italic>P. aeruginosa</italic> isolates from an infected dog, its owner, and the domestic environment, which suggests the occurrence of zoo anthroponotic transmission (<xref ref-type="bibr" rid="ref65">65</xref>, <xref ref-type="bibr" rid="ref66">66</xref>). In addition, the phylogenetic analysis of the resulting data facilitates a clear demonstration of the relative intraspecies evolutionary position of dogs-inhabiting strains indicated by the non-clustered distribution of dog STs among the whole MLST database of the <italic>P. aeruginosa</italic>. The findings of the current study (i.e., the genetic association between dog STs and those circulating in humans in Japan and the dog STs that matched the STs in the MLST database isolated from different clinical samples) promoted the concept that <italic>P. aeruginosa</italic> isolates are merely environmental strains that transmit to humans after becoming environmentally adapted. Here, we can support the hypothesis of the zoonotic transmission from either the dog itself or the environment of an infected dog to his immunocompromised owner, especially in the presence of pet-human life sharing. The current findings hypothetically support the previous reports of <italic>P. aeruginosa</italic> transmission, either directly or indirectly through contamination of environmental objects (<xref ref-type="bibr" rid="ref67 ref68 ref69">67&#x2013;69</xref>). Since pet ownership, especially dogs and cats, become progressively popular in Japan, awareness and knowledge about related public health concerns should be raised. While we have made efforts to ensure the reliability of each experimental result presented in this study, it is important to acknowledge certain limitations that may affect the interpretation of the empirical findings. These limitations include the small sample size, which needs to be addressed in future studies to further support and strengthen the conclusions drawn.</p>
</sec>
<sec id="sec12" sec-type="conclusions">
<title>Conclusion</title>
<p>Continuously updating the antimicrobial resistance profiles is necessary to establish the appropriate antibiotic drugs for treating <italic>P. aeruginosa</italic> infections in dogs and monitoring the emergence of new clones of <italic>P. aeruginosa</italic> from the pets&#x2019; environment. In addition, our study showed that CFPM, PIP/TAZ, CAZ, TOB, and GM could be reliable therapeutic options for treating pseudomonal canine otitis.</p>
</sec>
<sec id="sec13" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">Supplementary materials</xref>, further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="sec14">
<title>Author contributions</title>
<p>AE, JU, and KN conceived and designed the study, and substantially revised the paper. AE, JU, KG, KIY, and YT carried out the experiments, data analysis, and acquisition. AE, II, RR, WN, TT, and KK drafted the original manuscript. JU, KID and KN supervised the study. All authors read and approved the final manuscript.</p>
</sec>
<sec id="sec15" sec-type="funding-information">
<title>Funding</title>
<p>AE has received financial support from Damanhour University and the Mission Sector, Ministry of Higher Education, Egypt to accomplish the current study (program 2018/2019).</p>
</sec>
<sec id="conf1" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>TT was employed by Zenoaq Co. Ltd.</p>
<p>The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec100" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<sec id="sec17" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary material for this article can be found online at: <ext-link xlink:href="https://www.frontiersin.org/articles/10.3389/fvets.2023.1074127/full#supplementary-material" ext-link-type="uri">https://www.frontiersin.org/articles/10.3389/fvets.2023.1074127/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Table_1.DOCX" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<ref-list>
<title>References</title>
<ref id="ref1"><label>1.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hill</surname> <given-names>PB</given-names></name> <name><surname>Lo</surname> <given-names>A</given-names></name> <name><surname>Eden</surname> <given-names>CAN</given-names></name> <name><surname>Huntley</surname> <given-names>S</given-names></name> <name><surname>Morey</surname> <given-names>V</given-names></name> <name><surname>Ramsey</surname> <given-names>S</given-names></name> <etal/></person-group>. <article-title>Survey of the prevalence, diagnosis and treatment of dermatological conditions in small animals in general practice</article-title>. <source>Vet Rec</source>. (<year>2006</year>) <volume>158</volume>:<fpage>533</fpage>&#x2013;<lpage>9</lpage>. doi: <pub-id pub-id-type="doi">10.1136/vr.158.16.533</pub-id>, PMID: <pub-id pub-id-type="pmid">16632525</pub-id></citation></ref>
<ref id="ref2"><label>2.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Souza</surname> <given-names>CP</given-names></name> <name><surname>Foss</surname> <given-names>KD</given-names></name> <name><surname>Mascarenhas</surname> <given-names>MB</given-names></name> <name><surname>Clegg</surname> <given-names>JL</given-names></name></person-group>. <article-title>Otitis media with effusion in two Boston terrier dogs</article-title>. <source>Vet Med Sci</source>. (<year>2023</year>) <volume>9</volume>:<fpage>1069</fpage>&#x2013;<lpage>73</lpage>. doi: <pub-id pub-id-type="doi">10.1002/vms3.1092</pub-id></citation></ref>
<ref id="ref3"><label>3.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pye</surname> <given-names>C</given-names></name></person-group>. <article-title><italic>Pseudomonas</italic> otitis externa in dogs</article-title>. <source>Can Vet J</source>. (<year>2018</year>) <volume>59</volume>:<fpage>1231</fpage>&#x2013;<lpage>4</lpage>.</citation></ref>
<ref id="ref4"><label>4.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bajwa</surname> <given-names>J</given-names></name></person-group>. <article-title>Canine otitis externa&#x2013;treatment and complications</article-title>. <source>Can Vet J</source>. (<year>2019</year>) <volume>60</volume>:<fpage>97</fpage>:<fpage>99</fpage>.</citation></ref>
<ref id="ref5"><label>5.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Huang</surname> <given-names>H-P</given-names></name> <name><surname>Little</surname> <given-names>CJL</given-names></name> <name><surname>McNeil</surname> <given-names>PE</given-names></name></person-group>. <article-title>Histological changes in the external ear canal of dogs with otitis externa</article-title>. <source>Vet Dermatol</source>. (<year>2009</year>) <volume>20</volume>:<fpage>422</fpage>&#x2013;<lpage>8</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1365-3164.2009.00853.x</pub-id>, PMID: <pub-id pub-id-type="pmid">20178479</pub-id></citation></ref>
<ref id="ref6"><label>6.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Noli</surname> <given-names>C</given-names></name> <name><surname>Colombo</surname> <given-names>S</given-names></name> <name><surname>Cornegliani</surname> <given-names>L</given-names></name> <name><surname>Ghibaudo</surname> <given-names>G</given-names></name> <name><surname>Persico</surname> <given-names>P</given-names></name> <name><surname>Vercelli</surname> <given-names>A</given-names></name> <etal/></person-group>. <article-title>Quality of life of dogs with skin disease and of their owners. Part 2: administration of a questionnaire in various skin diseases and correlation to efficacy of therapy</article-title>. <source>Vet Dermatol</source>. (<year>2011</year>) <volume>22</volume>:<fpage>344</fpage>&#x2013;<lpage>51</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1365-3164.2011.00956.x</pub-id>, PMID: <pub-id pub-id-type="pmid">21435044</pub-id></citation></ref>
<ref id="ref7"><label>7.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Angus</surname> <given-names>JC</given-names></name></person-group>. <article-title>Otic cytology in health and disease</article-title>. <source>Vet Clin North Am Small Anim Pract</source>. (<year>2004</year>) <volume>34</volume>:<fpage>411</fpage>&#x2013;<lpage>24</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.cvsm.2003.10.005</pub-id>, PMID: <pub-id pub-id-type="pmid">15062616</pub-id></citation></ref>
<ref id="ref8"><label>8.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Topal&#x0103;</surname> <given-names>R</given-names></name> <name><surname>Burtan</surname> <given-names>I</given-names></name> <name><surname>F&#x00E2;nt&#x00E2;naru</surname> <given-names>M</given-names></name> <name><surname>Ciobanu</surname> <given-names>S</given-names></name> <name><surname>Burtan</surname> <given-names>LC</given-names></name></person-group>. <article-title>Epidemiological studies of otitis externa at carnivores</article-title>. <source>Luc &#x015E;tiin&#x0142;ifice Med Vet</source>. (<year>2007</year>) <volume>40</volume>:<fpage>247</fpage>&#x2013;<lpage>51</lpage>.</citation></ref>
<ref id="ref9"><label>9.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>August</surname> <given-names>JR</given-names></name></person-group>. <article-title>Otitis externa. A disease of multifactorial etiology</article-title>. <source>Vet Clin North Am Small Anim Pract</source>. (<year>1988</year>) <volume>18</volume>:<fpage>731</fpage>&#x2013;<lpage>42</lpage>. doi: <pub-id pub-id-type="doi">10.1016/s0195-5616(88)50076-1</pub-id></citation></ref>
<ref id="ref10"><label>10.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cole</surname> <given-names>LK</given-names></name> <name><surname>Kwochka</surname> <given-names>KW</given-names></name> <name><surname>Kowalski</surname> <given-names>JJ</given-names></name> <name><surname>Hillier</surname> <given-names>A</given-names></name></person-group>. <article-title>Microbial flora and antimicrobial susceptibility patterns of isolated pathogens from the horizontal ear canal and middle ear in dogs with otitis media</article-title>. <source>J Am Vet Med Assoc</source>. (<year>1998</year>) <volume>212</volume>:<fpage>534</fpage>&#x2013;<lpage>8</lpage>.</citation></ref>
<ref id="ref11"><label>11.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>O&#x2019;Neill</surname> <given-names>DG</given-names></name> <name><surname>Volk</surname> <given-names>AV</given-names></name> <name><surname>Soares</surname> <given-names>T</given-names></name> <name><surname>Church</surname> <given-names>DB</given-names></name> <name><surname>Brodbelt</surname> <given-names>DC</given-names></name> <name><surname>Pegram</surname> <given-names>C</given-names></name></person-group>. <article-title>Frequency and predisposing factors for canine otitis externa in the UK&#x2013;a primary veterinary care epidemiological view</article-title>. <source>Canine Med Genet</source>. (<year>2021</year>) <volume>8</volume>:<fpage>7</fpage>. doi: <pub-id pub-id-type="doi">10.1186/s40575-021-00106-1</pub-id>, PMID: <pub-id pub-id-type="pmid">34488894</pub-id></citation></ref>
<ref id="ref12"><label>12.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Baba</surname> <given-names>E</given-names></name> <name><surname>Fukata</surname> <given-names>T</given-names></name></person-group>. <article-title>Incidence of otitis externa in dogs and cats in Japan</article-title>. <source>Vet Rec</source>. (<year>1981</year>) <volume>108</volume>:<fpage>393</fpage>&#x2013;<lpage>5</lpage>. doi: <pub-id pub-id-type="doi">10.1136/vr.108.18.393</pub-id>, PMID: <pub-id pub-id-type="pmid">7027593</pub-id></citation></ref>
<ref id="ref13"><label>13.</label> <citation citation-type="other"><person-group person-group-type="author"><name><surname>Griffin</surname> <given-names>C.</given-names></name></person-group> <italic>Classifying cases of otitis externa the PPSP system</italic>. Proceedings of ESVD Workshop on Otitis St Helens. (<year>2010</year>).</citation></ref>
<ref id="ref14"><label>14.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>O&#x2019;Neill</surname> <given-names>DG</given-names></name> <name><surname>Lee</surname> <given-names>YH</given-names></name> <name><surname>Brodbelt</surname> <given-names>DC</given-names></name> <name><surname>Church</surname> <given-names>DB</given-names></name> <name><surname>Pegram</surname> <given-names>C</given-names></name> <name><surname>Halfacree</surname> <given-names>Z</given-names></name></person-group>. <article-title>Reporting the epidemiology of aural haematoma in dogs and proposing a novel aetiopathogenetic pathway</article-title>. <source>Sci Rep</source>. (<year>2021</year>) <volume>11</volume>:<fpage>21670</fpage>. doi: <pub-id pub-id-type="doi">10.1038/s41598-021-00352-0</pub-id>, PMID: <pub-id pub-id-type="pmid">34753939</pub-id></citation></ref>
<ref id="ref15"><label>15.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Harvey</surname> <given-names>R</given-names></name></person-group>. <article-title>A review of recent developments in veterinary otology</article-title>. <source>Vet. Sci.</source> (<year>2022</year>) <volume>9</volume>:<fpage>161</fpage>. doi: <pub-id pub-id-type="doi">10.3390/vetsci9040161</pub-id>, PMID: <pub-id pub-id-type="pmid">35448659</pub-id></citation></ref>
<ref id="ref16"><label>16.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schaefer</surname> <given-names>P</given-names></name> <name><surname>Baugh</surname> <given-names>RF</given-names></name></person-group>. <article-title>Acute otitis externa: an update</article-title>. <source>Am Fam Physician</source>. (<year>2012</year>) <volume>86</volume>:<fpage>1055</fpage>&#x2013;<lpage>61</lpage>. PMID: <pub-id pub-id-type="pmid">23198673</pub-id></citation></ref>
<ref id="ref17"><label>17.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rosenfeld</surname> <given-names>RM</given-names></name> <name><surname>Brown</surname> <given-names>L</given-names></name> <name><surname>Cannon</surname> <given-names>CR</given-names></name> <name><surname>Dolor</surname> <given-names>RJ</given-names></name> <name><surname>Ganiats</surname> <given-names>TG</given-names></name> <name><surname>Hannley</surname> <given-names>M</given-names></name> <etal/></person-group>. <article-title>Clinical practice guideline: Acute otitis externa</article-title>. <source>Otolaryngol Head Neck Surg</source>. (<year>2006</year>) <volume>134</volume>:<fpage>S4</fpage>&#x2013;<lpage>S23</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.otohns.2006.02.014</pub-id></citation></ref>
<ref id="ref18"><label>18.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schick</surname> <given-names>AE</given-names></name> <name><surname>Angus</surname> <given-names>JC</given-names></name> <name><surname>Coyner</surname> <given-names>KS</given-names></name></person-group>. <article-title>Variability of laboratory identification and antibiotic susceptibility reporting of Pseudomonas spp. isolates from dogs with chronic otitis externa</article-title>. <source>Vet Dermatol</source>. (<year>2007</year>) <volume>18</volume>:<fpage>120</fpage>&#x2013;<lpage>6</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1365-3164.2007.00581.x</pub-id>, PMID: <pub-id pub-id-type="pmid">17355427</pub-id></citation></ref>
<ref id="ref19"><label>19.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rosenfeld</surname> <given-names>RM</given-names></name> <name><surname>Schwartz</surname> <given-names>SR</given-names></name> <name><surname>Cannon</surname> <given-names>CR</given-names></name> <name><surname>Roland</surname> <given-names>PS</given-names></name> <name><surname>Simon</surname> <given-names>GR</given-names></name> <name><surname>Kumar</surname> <given-names>KA</given-names></name> <etal/></person-group>. <article-title>Clinical practice guideline: acute otitis externa</article-title>. <source>Otolaryngol Head Neck Surg</source>. (<year>2014</year>) <volume>150</volume>:<fpage>S1</fpage>&#x2013;<lpage>S24</lpage>. doi: <pub-id pub-id-type="doi">10.1177/0194599813517083</pub-id>, PMID: <pub-id pub-id-type="pmid">24491310</pub-id></citation></ref>
<ref id="ref20"><label>20.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>De Martino</surname> <given-names>L</given-names></name> <name><surname>Nocera</surname> <given-names>FP</given-names></name> <name><surname>Mallardo</surname> <given-names>K</given-names></name> <name><surname>Nizza</surname> <given-names>S</given-names></name> <name><surname>Masturzo</surname> <given-names>E</given-names></name> <name><surname>Fiorito</surname> <given-names>F</given-names></name> <etal/></person-group>. <article-title>An update on microbiological causes of canine otitis externa in Campania region, Italy</article-title>. <source>Asian Pac J Trop Biomed</source>. (<year>2016</year>) <volume>6</volume>:<fpage>384</fpage>&#x2013;<lpage>9</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.apjtb.2015.11.012</pub-id></citation></ref>
<ref id="ref21"><label>21.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nocera</surname> <given-names>FP</given-names></name> <name><surname>Ambrosio</surname> <given-names>M</given-names></name> <name><surname>Fiorito</surname> <given-names>F</given-names></name> <name><surname>Cortese</surname> <given-names>L</given-names></name> <name><surname>De Martino</surname> <given-names>L</given-names></name></person-group>. <article-title>On gram-positive- and gram-negative-Bacteria-associated canine and feline skin infections: a 4-year retrospective study of the university veterinary microbiology diagnostic Laboratory of Naples, Italy</article-title>. <source>Animals</source>. (<year>2021</year>) <volume>11</volume>:<fpage>1603</fpage>. doi: <pub-id pub-id-type="doi">10.3390/ani11061603</pub-id>, PMID: <pub-id pub-id-type="pmid">34072316</pub-id></citation></ref>
<ref id="ref22"><label>22.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Von Silva-Tarouca</surname> <given-names>MSE</given-names></name> <name><surname>Wolf</surname> <given-names>G</given-names></name> <name><surname>Mueller</surname> <given-names>RS</given-names></name></person-group>. <article-title>Determination of minimum inhibitory concentrations for silver sulfadiazine and other topical antimicrobial agents against strains of <italic>Pseudomonas aeruginosa</italic> isolated from canine otitis externa</article-title>. <source>Vet Dermatol</source>. (<year>2019</year>) <volume>30</volume>:<fpage>145</fpage>&#x2013;<lpage>e42</lpage>. doi: <pub-id pub-id-type="doi">10.1111/vde.12718</pub-id>, PMID: <pub-id pub-id-type="pmid">30663140</pub-id></citation></ref>
<ref id="ref23"><label>23.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Guardabassi</surname> <given-names>L</given-names></name> <name><surname>Schwarz</surname> <given-names>S</given-names></name> <name><surname>Lloyd</surname> <given-names>DH</given-names></name></person-group>. <article-title>Pet animals as reservoirs of antimicrobial-resistant bacteria: review</article-title>. <source>J Antimicrob Chemother</source>. (<year>2004</year>) <volume>54</volume>:<fpage>321</fpage>&#x2013;<lpage>32</lpage>. doi: <pub-id pub-id-type="doi">10.1093/jac/dkh332</pub-id>, PMID: <pub-id pub-id-type="pmid">15254022</pub-id></citation></ref>
<ref id="ref24"><label>24.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rubin</surname> <given-names>J</given-names></name> <name><surname>Walker</surname> <given-names>RD</given-names></name> <name><surname>Blickenstaff</surname> <given-names>K</given-names></name> <name><surname>Bodeis-Jones</surname> <given-names>S</given-names></name> <name><surname>Zhao</surname> <given-names>S</given-names></name></person-group>. <article-title>Antimicrobial resistance and genetic characterization of fluoroquinolone resistance of <italic>Pseudomonas aeruginosa</italic> isolated from canine infections</article-title>. <source>Vet Microbiol</source>. (<year>2008</year>) <volume>131</volume>:<fpage>164</fpage>&#x2013;<lpage>72</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vetmic.2008.02.018</pub-id>, PMID: <pub-id pub-id-type="pmid">18395369</pub-id></citation></ref>
<ref id="ref25"><label>25.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>MacVane</surname> <given-names>SH</given-names></name> <name><surname>Pandey</surname> <given-names>R</given-names></name> <name><surname>Steed</surname> <given-names>LL</given-names></name> <name><surname>Kreiswirth</surname> <given-names>BN</given-names></name> <name><surname>Chen</surname> <given-names>L</given-names></name></person-group>. <article-title>Emergence of Ceftolozane-Tazobactam-resistant <italic>Pseudomonas aeruginosa</italic> during treatment is mediated by a single AmpC structural mutation</article-title>. <source>Antimicrob Agents Chemother</source>. (<year>2022</year>) <volume>61</volume>:<fpage>e01183</fpage>. doi: <pub-id pub-id-type="doi">10.1128/AAC.01183-17</pub-id>, PMID: <pub-id pub-id-type="pmid">28947473</pub-id></citation></ref>
<ref id="ref26"><label>26.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yiwei</surname> <given-names>Z</given-names></name> <name><surname>Jie</surname> <given-names>C</given-names></name> <name><surname>Han</surname> <given-names>S</given-names></name> <name><surname>Zhongju</surname> <given-names>C</given-names></name> <name><surname>Qi-wen</surname> <given-names>Y</given-names></name> <name><surname>Jin</surname> <given-names>Z</given-names></name> <etal/></person-group>. <article-title>Emergence of ceftazidime- and avibactam-resistant <italic>Klebsiella pneumoniae</italic> Carbapenemase-producing <italic>Pseudomonas aeruginosa</italic> in China</article-title>. <source>mSystems</source>. (<year>2022</year>) <volume>6</volume>:<fpage>e0078721</fpage>. doi: <pub-id pub-id-type="doi">10.1128/mSystems.00787-21</pub-id>, PMID: <pub-id pub-id-type="pmid">34726488</pub-id></citation></ref>
<ref id="ref27"><label>27.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nuttall</surname> <given-names>T</given-names></name> <name><surname>Cole</surname> <given-names>LK</given-names></name></person-group>. <article-title>Evidence-based veterinary dermatology: a systematic review of interventions for treatment of Pseudomonas otitis in dogs</article-title>. <source>Vet Dermatol</source>. (<year>2007</year>) <volume>18</volume>:<fpage>69</fpage>&#x2013;<lpage>77</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1365-3164.2007.00575.x</pub-id>, PMID: <pub-id pub-id-type="pmid">17355420</pub-id></citation></ref>
<ref id="ref28"><label>28.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Moradali</surname> <given-names>MF</given-names></name> <name><surname>Ghods</surname> <given-names>S</given-names></name> <name><surname>Rehm</surname> <given-names>BHA</given-names></name></person-group>. <article-title><italic>Pseudomonas aeruginosa</italic> lifestyle: a paradigm for adaptation, survival, and persistence</article-title>. <source>Front Cell Infect Microbiol</source>. (<year>2017</year>) <volume>7</volume>:<fpage>39</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fcimb.2017.00039</pub-id>, PMID: <pub-id pub-id-type="pmid">28261568</pub-id></citation></ref>
<ref id="ref29"><label>29.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brock</surname> <given-names>MT</given-names></name> <name><surname>Fedderly</surname> <given-names>GC</given-names></name> <name><surname>Borlee</surname> <given-names>GI</given-names></name> <name><surname>Russell</surname> <given-names>MM</given-names></name> <name><surname>Filipowska</surname> <given-names>LK</given-names></name> <name><surname>Hyatt</surname> <given-names>DR</given-names></name> <etal/></person-group>. <article-title><italic>Pseudomonas aeruginosa</italic> variants obtained from veterinary clinical samples reveal a role for cyclic di-GMP in biofilm formation and colony morphology</article-title>. <source>Microbiology</source>. (<year>2017</year>) <volume>163</volume>:<fpage>1613</fpage>&#x2013;<lpage>25</lpage>. doi: <pub-id pub-id-type="doi">10.1099/mic.0.000541</pub-id>, PMID: <pub-id pub-id-type="pmid">29034850</pub-id></citation></ref>
<ref id="ref30"><label>30.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hu</surname> <given-names>H</given-names></name> <name><surname>Manos</surname> <given-names>J</given-names></name></person-group>. <article-title>Pulsed-field gel electrophoresis of <italic>Pseudomonas aeruginosa</italic></article-title>. <source>Methods Mol Biol</source>. (<year>2015</year>) <volume>1301</volume>:<fpage>157</fpage>&#x2013;<lpage>70</lpage>. doi: <pub-id pub-id-type="doi">10.1007/978-1-4939-2599-5_14</pub-id></citation></ref>
<ref id="ref31"><label>31.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Syrmis</surname> <given-names>MW</given-names></name> <name><surname>O&#x2019;Carroll</surname> <given-names>MR</given-names></name> <name><surname>Sloots</surname> <given-names>TP</given-names></name> <name><surname>Coulter</surname> <given-names>C</given-names></name> <name><surname>Wainwright</surname> <given-names>CE</given-names></name> <name><surname>Bell</surname> <given-names>SC</given-names></name> <etal/></person-group>. <article-title>Rapid genotyping of <italic>Pseudomonas aeruginosa</italic> isolates harboured by adult and paediatric patients with cystic fibrosis using repetitive-element-based PCR assays</article-title>. <source>J Med Microbiol</source>. (<year>2004</year>) <volume>53</volume>:<fpage>1089</fpage>&#x2013;<lpage>96</lpage>. doi: <pub-id pub-id-type="doi">10.1099/jmm.0.45611-0</pub-id>, PMID: <pub-id pub-id-type="pmid">15496385</pub-id></citation></ref>
<ref id="ref32"><label>32.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Curran</surname> <given-names>B</given-names></name> <name><surname>Jonas</surname> <given-names>D</given-names></name> <name><surname>Grundmann</surname> <given-names>H</given-names></name> <name><surname>Pitt</surname> <given-names>T</given-names></name> <name><surname>Dowson</surname> <given-names>CG</given-names></name></person-group>. <article-title>Development of a multilocus sequence typing scheme for the opportunistic pathogen <italic>Pseudomonas aeruginosa</italic></article-title>. <source>J Clin Microbiol</source>. (<year>2004</year>) <volume>42</volume>:<fpage>5644</fpage>&#x2013;<lpage>9</lpage>. doi: <pub-id pub-id-type="doi">10.1128/JCM.42.12.5644-5649.2004</pub-id>, PMID: <pub-id pub-id-type="pmid">15583294</pub-id></citation></ref>
<ref id="ref33"><label>33.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Vernez</surname> <given-names>I</given-names></name> <name><surname>Hauser</surname> <given-names>P</given-names></name> <name><surname>Bernasconi</surname> <given-names>MV</given-names></name> <name><surname>Blanc</surname> <given-names>DS</given-names></name></person-group>. <article-title>Population genetic analysis of <italic>Pseudomonas aeruginosa</italic> using multilocus sequence typing</article-title>. <source>FEMS Immunol Med Microbiol</source>. (<year>2005</year>) <volume>43</volume>:<fpage>29</fpage>&#x2013;<lpage>35</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.femsim.2004.06.024</pub-id>, PMID: <pub-id pub-id-type="pmid">15607633</pub-id></citation></ref>
<ref id="ref34"><label>34.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Aslam</surname> <given-names>B</given-names></name> <name><surname>Khurshid</surname> <given-names>M</given-names></name> <name><surname>Arshad</surname> <given-names>MI</given-names></name> <name><surname>Muzammil</surname> <given-names>S</given-names></name> <name><surname>Rasool</surname> <given-names>M</given-names></name> <name><surname>Yasmeen</surname> <given-names>N</given-names></name> <etal/></person-group>. <article-title>Antibiotic resistance: one health one world outlook</article-title>. <source>Front Cell Infect Microbiol</source>. (<year>2021</year>) <volume>11</volume>:<fpage>771510</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fcimb.2021.771510</pub-id>, PMID: <pub-id pub-id-type="pmid">34900756</pub-id></citation></ref>
<ref id="ref35"><label>35.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Marco-Fuertes</surname> <given-names>A</given-names></name> <name><surname>Marin</surname> <given-names>C</given-names></name> <name><surname>Lorenzo-Rebenaque</surname> <given-names>L</given-names></name> <name><surname>Vega</surname> <given-names>S</given-names></name> <name><surname>Montoro-Dasi</surname> <given-names>L</given-names></name></person-group>. <article-title>Antimicrobial resistance in companion animals: a new challenge for the one health approach in the European Union</article-title>. <source>Vet Sci</source>. (<year>2022</year>) <volume>9</volume>:<fpage>208</fpage>. doi: <pub-id pub-id-type="doi">10.3390/vetsci9050208</pub-id>, PMID: <pub-id pub-id-type="pmid">35622736</pub-id></citation></ref>
<ref id="ref36"><label>36.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yukawa</surname> <given-names>S</given-names></name> <name><surname>Tsuyuki</surname> <given-names>Y</given-names></name> <name><surname>Sato</surname> <given-names>T</given-names></name> <name><surname>Fukuda</surname> <given-names>A</given-names></name> <name><surname>Usui</surname> <given-names>M</given-names></name> <name><surname>Tamura</surname> <given-names>Y</given-names></name></person-group>. <article-title>Antimicrobial resistance of <italic>Pseudomonas aeruginosa</italic> isolated from dogs and cats in primary veterinary hospitals in Japan</article-title>. <source>Jpn J Infect Dis</source>. (<year>2017</year>) <volume>70</volume>:<fpage>461</fpage>. doi: <pub-id pub-id-type="doi">10.7883/yoken.JJID.2016.536</pub-id>, PMID: <pub-id pub-id-type="pmid">28367887</pub-id></citation></ref>
<ref id="ref37"><label>37.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Harada</surname> <given-names>K</given-names></name> <name><surname>Arima</surname> <given-names>S</given-names></name> <name><surname>Niina</surname> <given-names>A</given-names></name> <name><surname>Kataoka</surname> <given-names>Y</given-names></name> <name><surname>Takahashi</surname> <given-names>T</given-names></name></person-group>. <article-title>Characterization of <italic>Pseudomonas aeruginosa</italic> isolates from dogs and cats in Japan: current status of antimicrobial resistance and prevailing resistance mechanisms</article-title>. <source>Microbiol Immunol</source>. (<year>2012</year>) <volume>56</volume>:<fpage>123</fpage>&#x2013;<lpage>7</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1348-0421.2011.00416.x</pub-id>, PMID: <pub-id pub-id-type="pmid">22188523</pub-id></citation></ref>
<ref id="ref38"><label>38.</label> <citation citation-type="other"><person-group person-group-type="author"><collab id="coll1">Clinical and Laboratory Standards Institute</collab></person-group>. <italic>Institute CaLS. Performance standards for antimicrobial disk and dilution susceptibility tests for bacteria isolated from animals CLSI supplement VET08</italic>. Pennsylvania: Clinical and Laboratory Standards Institute (<year>2018</year>).</citation></ref>
<ref id="ref39"><label>39.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Magiorakos</surname> <given-names>AP</given-names></name> <name><surname>Srinivasan</surname> <given-names>A</given-names></name> <name><surname>Carey</surname> <given-names>RB</given-names></name> <name><surname>Carmeli</surname> <given-names>Y</given-names></name> <name><surname>Falagas</surname> <given-names>ME</given-names></name> <name><surname>Giske</surname> <given-names>CG</given-names></name> <etal/></person-group>. <article-title>Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance</article-title>. <source>Clin Microbiol Infect</source>. (<year>2012</year>) <volume>18</volume>:<fpage>268</fpage>&#x2013;<lpage>81</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1469-0691.2011.03570.x</pub-id>, PMID: <pub-id pub-id-type="pmid">21793988</pub-id></citation></ref>
<ref id="ref40"><label>40.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Francisco</surname> <given-names>AP</given-names></name> <name><surname>Bugalho</surname> <given-names>M</given-names></name> <name><surname>Ramirez</surname> <given-names>M</given-names></name> <name><surname>Carri&#x00E7;o</surname> <given-names>JA</given-names></name></person-group>. <article-title>Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach</article-title>. <source>BMC Bioinformatics</source>. (<year>2009</year>) <volume>10</volume>:<fpage>1</fpage>&#x2013;<lpage>15</lpage>. doi: <pub-id pub-id-type="doi">10.1186/1471-2105-10-152</pub-id>, PMID: <pub-id pub-id-type="pmid">19450271</pub-id></citation></ref>
<ref id="ref41"><label>41.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Harvey</surname> <given-names>ND</given-names></name></person-group>. <article-title>How old is my dog? Identification of rational age groupings in pet dogs based upon normative age-linked processes</article-title>. <source>Front Vet Sci</source>. (<year>2021</year>) <volume>8</volume>:<fpage>643085</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fvets.2021.643085</pub-id>, PMID: <pub-id pub-id-type="pmid">33987218</pub-id></citation></ref>
<ref id="ref42"><label>42.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Marshall</surname> <given-names>BM</given-names></name> <name><surname>Ochieng</surname> <given-names>DJ</given-names></name> <name><surname>Levy</surname> <given-names>SB</given-names></name></person-group>. <article-title>Commensals: underappreciated reservoir of antibiotic resistance</article-title>. <source>Microbe</source>. (<year>2009</year>) <volume>4</volume>:<fpage>231</fpage>&#x2013;<lpage>8</lpage>. doi: <pub-id pub-id-type="doi">10.1128/microbe.4.231.1</pub-id></citation></ref>
<ref id="ref43"><label>43.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Scott</surname> <given-names>A</given-names></name> <name><surname>Pottenger</surname> <given-names>S</given-names></name> <name><surname>Timofte</surname> <given-names>D</given-names></name> <name><surname>Moore</surname> <given-names>M</given-names></name> <name><surname>Wright</surname> <given-names>L</given-names></name> <name><surname>Kukavica-Ibrulj</surname> <given-names>I</given-names></name> <etal/></person-group>. <article-title>Reservoirs of resistance: polymyxin resistance in veterinary-associated companion animal isolates of <italic>Pseudomonas aeruginosa</italic></article-title>. <source>Vet Rec</source>. (<year>2019</year>) <volume>185</volume>:<fpage>206</fpage>. doi: <pub-id pub-id-type="doi">10.1136/vr.105075</pub-id>, PMID: <pub-id pub-id-type="pmid">31239295</pub-id></citation></ref>
<ref id="ref44"><label>44.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zamankhan Malayeri</surname> <given-names>H</given-names></name> <name><surname>Jamshidi</surname> <given-names>S</given-names></name> <name><surname>Zahraei</surname> <given-names>ST</given-names></name></person-group>. <article-title>Identification and antimicrobial susceptibility patterns of bacteria causing otitis externa in dogs</article-title>. <source>Vet Res Commun</source>. (<year>2010</year>) <volume>34</volume>:<fpage>435</fpage>&#x2013;<lpage>44</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s11259-010-9417-y</pub-id></citation></ref>
<ref id="ref45"><label>45.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nielsen</surname> <given-names>SS</given-names></name> <name><surname>Bicout</surname> <given-names>DJ</given-names></name> <name><surname>Calistri</surname> <given-names>P</given-names></name> <name><surname>Canali</surname> <given-names>E</given-names></name> <name><surname>Drewe</surname> <given-names>JA</given-names></name> <name><surname>Garin-Bastuji</surname> <given-names>B</given-names></name> <etal/></person-group>. <article-title>Assessment of listing and categorisation of animal diseases within the framework of the animal health law (regulation (EU) no 2016/429): antimicrobial-resistant <italic>Pseudomonas aeruginosa</italic> in dogs and cats</article-title>. <source>EFSA J</source>. (<year>2022</year>) <volume>20</volume>:<fpage>e07310</fpage>. doi: <pub-id pub-id-type="doi">10.2903/j.efsa.2022.7080</pub-id>, PMID: <pub-id pub-id-type="pmid">35126739</pub-id></citation></ref>
<ref id="ref46"><label>46.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lister</surname> <given-names>PD</given-names></name> <name><surname>Wolter</surname> <given-names>DJ</given-names></name> <name><surname>Hanson</surname> <given-names>ND</given-names></name></person-group>. <article-title>Antibacterial-resistant <italic>Pseudomonas aeruginosa</italic>: clinical impact and complex regulation of chromosomally encoded resistance mechanisms</article-title>. <source>Clin Microbiol Rev</source>. (<year>2009</year>) <volume>22</volume>:<fpage>582</fpage>&#x2013;<lpage>610</lpage>. doi: <pub-id pub-id-type="doi">10.1128/CMR.00040-09</pub-id></citation></ref>
<ref id="ref47"><label>47.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bour&#x00E9;ly</surname> <given-names>C</given-names></name> <name><surname>Cazeau</surname> <given-names>G</given-names></name> <name><surname>Jarrige</surname> <given-names>N</given-names></name> <name><surname>Leblond</surname> <given-names>A</given-names></name> <name><surname>Madec</surname> <given-names>JY</given-names></name> <name><surname>Haenni</surname> <given-names>M</given-names></name> <etal/></person-group>. <article-title>Antimicrobial resistance patterns of bacteria isolated from dogs with otitis</article-title>. <source>Epidemiol Infect</source>. (<year>2019</year>) <volume>147</volume>:<fpage>e121</fpage>. doi: <pub-id pub-id-type="doi">10.1017/S0950268818003278</pub-id>, PMID: <pub-id pub-id-type="pmid">30868979</pub-id></citation></ref>
<ref id="ref48"><label>48.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bugden</surname> <given-names>DL</given-names></name></person-group>. <article-title>Identification and antibiotic susceptibility of bacterial isolates from dogs with otitis externa in Australia</article-title>. <source>Aust Vet J</source>. (<year>2013</year>) <volume>91</volume>:<fpage>43</fpage>&#x2013;<lpage>6</lpage>. doi: <pub-id pub-id-type="doi">10.1111/avj.12007</pub-id>, PMID: <pub-id pub-id-type="pmid">23356371</pub-id></citation></ref>
<ref id="ref49"><label>49.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jeannot</surname> <given-names>K</given-names></name> <name><surname>Hagart</surname> <given-names>K</given-names></name> <name><surname>Dortet</surname> <given-names>L</given-names></name> <name><surname>Kostrzewa</surname> <given-names>M</given-names></name> <name><surname>Filloux</surname> <given-names>A</given-names></name> <name><surname>Plesiat</surname> <given-names>P</given-names></name> <etal/></person-group>. <article-title>Detection of Colistin resistance in <italic>Pseudomonas aeruginosa</italic> using the MALDIxin test on the routine MALDI Biotyper Sirius mass spectrometer</article-title>. <source>Front Microbiol</source>. (<year>2021</year>) <volume>12</volume>:<fpage>725383</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fmicb.2021.725383</pub-id>, PMID: <pub-id pub-id-type="pmid">34531843</pub-id></citation></ref>
<ref id="ref50"><label>50.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hayashi</surname> <given-names>W</given-names></name> <name><surname>Izumi</surname> <given-names>K</given-names></name> <name><surname>Yoshida</surname> <given-names>S</given-names></name> <name><surname>Takizawa</surname> <given-names>S</given-names></name> <name><surname>Sakaguchi</surname> <given-names>K</given-names></name> <name><surname>Iyori</surname> <given-names>K</given-names></name> <etal/></person-group>. <article-title>Antimicrobial resistance and type III secretion system Virulotypes of <italic>Pseudomonas aeruginosa</italic> isolates from dogs and cats in primary veterinary hospitals in Japan: identification of the international high-risk clone sequence type 235</article-title>. <source>Microbiol Spectr</source>. (<year>2022</year>) <volume>9</volume>:<fpage>e0040821</fpage>. doi: <pub-id pub-id-type="doi">10.1128/Spectrum.00408-21</pub-id>, PMID: <pub-id pub-id-type="pmid">34585944</pub-id></citation></ref>
<ref id="ref51"><label>51.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Makita</surname> <given-names>K</given-names></name> <name><surname>Sugahara</surname> <given-names>N</given-names></name> <name><surname>Nakamura</surname> <given-names>K</given-names></name> <name><surname>Matsuoka</surname> <given-names>T</given-names></name> <name><surname>Sakai</surname> <given-names>M</given-names></name> <name><surname>Tamura</surname> <given-names>Y</given-names></name></person-group>. <article-title>Current status of antimicrobial drug use in Japanese companion animal clinics and the factors associated with their use</article-title>. <source>Front Vet Sci</source>. (<year>2021</year>) <volume>8</volume>:<fpage>705648</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fvets.2021.705648</pub-id></citation></ref>
<ref id="ref52"><label>52.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Justo</surname> <given-names>JA</given-names></name> <name><surname>Bosso</surname> <given-names>JA</given-names></name></person-group>. <article-title>Adverse reactions associated with systemic polymyxin therapy</article-title>. <source>Pharmacotherapy</source>. (<year>2015</year>) <volume>35</volume>:<fpage>28</fpage>&#x2013;<lpage>33</lpage>. doi: <pub-id pub-id-type="doi">10.1002/phar.1493</pub-id></citation></ref>
<ref id="ref53"><label>53.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Werners</surname> <given-names>AH</given-names></name></person-group>. <article-title>Treatment of endotoxaemia and septicaemia in the equine patient</article-title>. <source>J Vet Pharmacol Ther</source>. (<year>2017</year>) <volume>40</volume>:<fpage>1</fpage>&#x2013;<lpage>15</lpage>. doi: <pub-id pub-id-type="doi">10.1111/jvp.12329</pub-id>, PMID: <pub-id pub-id-type="pmid">27452161</pub-id></citation></ref>
<ref id="ref54"><label>54.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Catry</surname> <given-names>B</given-names></name> <name><surname>Cavaleri</surname> <given-names>M</given-names></name> <name><surname>Baptiste</surname> <given-names>K</given-names></name> <name><surname>Grave</surname> <given-names>K</given-names></name> <name><surname>Grein</surname> <given-names>K</given-names></name> <name><surname>Holm</surname> <given-names>A</given-names></name> <etal/></person-group>. <article-title>Use of colistin-containing products within the European Union and European economic area (EU/EEA): development of resistance in animals and possible impact on human and animal health</article-title>. <source>Int J Antimicrob Agents</source>. (<year>2015</year>) <volume>46</volume>:<fpage>297</fpage>&#x2013;<lpage>306</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ijantimicag.2015.06.005</pub-id>, PMID: <pub-id pub-id-type="pmid">26215780</pub-id></citation></ref>
<ref id="ref55"><label>55.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Langendonk</surname> <given-names>RF</given-names></name> <name><surname>Neill</surname> <given-names>DR</given-names></name> <name><surname>Fothergill</surname> <given-names>JL</given-names></name></person-group>. <article-title>The building blocks of antimicrobial resistance in <italic>Pseudomonas aeruginosa</italic>: implications for current resistance-breaking therapies</article-title>. <source>Front Cell Infect Microbiol</source>. (<year>2021</year>) <volume>11</volume>:<fpage>665759</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fcimb.2021.665759</pub-id>, PMID: <pub-id pub-id-type="pmid">33937104</pub-id></citation></ref>
<ref id="ref56"><label>56.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Baggio</surname> <given-names>D</given-names></name> <name><surname>Ananda-Rajah</surname> <given-names>MR</given-names></name></person-group>. <article-title>Fluoroquinolone antibiotics and adverse events</article-title>. <source>Aust Prescr</source>. (<year>2021</year>) <volume>44</volume>:<fpage>161</fpage>&#x2013;<lpage>4</lpage>. doi: <pub-id pub-id-type="doi">10.18773/austprescr.2021.035</pub-id>, PMID: <pub-id pub-id-type="pmid">34728881</pub-id></citation></ref>
<ref id="ref57"><label>57.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Uchiyama</surname> <given-names>J</given-names></name> <name><surname>Shigehisa</surname> <given-names>R</given-names></name> <name><surname>Nasukawa</surname> <given-names>T</given-names></name> <name><surname>Mizukami</surname> <given-names>K</given-names></name> <name><surname>Takemura-Uchiyama</surname> <given-names>I</given-names></name> <name><surname>Ujihara</surname> <given-names>T</given-names></name> <etal/></person-group>. <article-title>Piperacillin and ceftazidime produce the strongest synergistic phage-antibiotic effect in <italic>Pseudomonas aeruginosa</italic></article-title>. <source>Arch Virol</source>. (<year>2018</year>) <volume>163</volume>:<fpage>1941</fpage>&#x2013;<lpage>8</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s00705-018-3811-0</pub-id>, PMID: <pub-id pub-id-type="pmid">29550930</pub-id></citation></ref>
<ref id="ref58"><label>58.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tartor</surname> <given-names>YH</given-names></name> <name><surname>Gharieb</surname> <given-names>RMA</given-names></name> <name><surname>Abd El-Aziz</surname> <given-names>NK</given-names></name> <name><surname>El Damaty</surname> <given-names>HM</given-names></name> <name><surname>Enany</surname> <given-names>S</given-names></name> <name><surname>Khalifa</surname> <given-names>E</given-names></name> <etal/></person-group>. <article-title>Virulence determinants and plasmid-mediated Colistin resistance mcr genes in gram-negative Bacteria isolated from bovine Milk</article-title>. <source>Front Cell Infect Microbiol</source>. (<year>2021</year>) <volume>11</volume>:<fpage>761417</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fcimb.2021.761417</pub-id>, PMID: <pub-id pub-id-type="pmid">34888259</pub-id></citation></ref>
<ref id="ref59"><label>59.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Argud&#x00ED;n</surname> <given-names>MA</given-names></name> <name><surname>Deplano</surname> <given-names>A</given-names></name> <name><surname>Meghraoui</surname> <given-names>A</given-names></name> <name><surname>Dod&#x00E9;mont</surname> <given-names>M</given-names></name> <name><surname>Heinrichs</surname> <given-names>A</given-names></name> <name><surname>Denis</surname> <given-names>O</given-names></name> <etal/></person-group>. <article-title>Bacteria from animals as a Pool of antimicrobial resistance genes</article-title>. <source>Antibiotics</source>. (<year>2017</year>) <volume>6</volume>:<fpage>12</fpage>. doi: <pub-id pub-id-type="doi">10.3390/antibiotics6020012</pub-id>, PMID: <pub-id pub-id-type="pmid">28587316</pub-id></citation></ref>
<ref id="ref60"><label>60.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hamame</surname> <given-names>A</given-names></name> <name><surname>Davoust</surname> <given-names>B</given-names></name> <name><surname>Cherak</surname> <given-names>Z</given-names></name> <name><surname>Rolain</surname> <given-names>J-M</given-names></name> <name><surname>Diene</surname> <given-names>SM</given-names></name></person-group>. <article-title>Mobile Colistin resistance (mcr) genes in cats and dogs and their zoonotic transmission risks</article-title>. <source>Pathogens</source>. (<year>2022</year>) <volume>11</volume>:<fpage>698</fpage>. doi: <pub-id pub-id-type="doi">10.3390/pathogens11060698</pub-id>, PMID: <pub-id pub-id-type="pmid">35745552</pub-id></citation></ref>
<ref id="ref61"><label>61.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>del Barrio-Tofi&#x00F1;o</surname> <given-names>E</given-names></name> <name><surname>L&#x00F3;pez-Causap&#x00E9;</surname> <given-names>C</given-names></name> <name><surname>Oliver</surname> <given-names>A</given-names></name></person-group>. <article-title><italic>Pseudomonas aeruginosa</italic> epidemic high-risk clones and their association with horizontally-acquired &#x03B2;-lactamases: 2020 update</article-title>. <source>Int J Antimicrob Agents</source>. (<year>2020</year>) <volume>56</volume>:<fpage>106196</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ijantimicag.2020.106196</pub-id>, PMID: <pub-id pub-id-type="pmid">33045347</pub-id></citation></ref>
<ref id="ref62"><label>62.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Maatallah</surname> <given-names>M</given-names></name> <name><surname>Cheriaa</surname> <given-names>J</given-names></name> <name><surname>Backhrouf</surname> <given-names>A</given-names></name> <name><surname>Iversen</surname> <given-names>A</given-names></name> <name><surname>Grundmann</surname> <given-names>H</given-names></name> <name><surname>Do</surname> <given-names>T</given-names></name> <etal/></person-group>. <article-title>Population structure of <italic>Pseudomonas aeruginosa</italic> from five Mediterranean countries: evidence for frequent recombination and epidemic occurrence of CC235</article-title>. <source>PLoS One</source>. (<year>2011</year>) <volume>6</volume>:&#x2013;<lpage>e25617</lpage>. doi: <pub-id pub-id-type="doi">10.1371/journal.pone.0025617</pub-id>, PMID: <pub-id pub-id-type="pmid">21984923</pub-id></citation></ref>
<ref id="ref63"><label>63.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nageeb</surname> <given-names>W</given-names></name> <name><surname>Amin</surname> <given-names>DH</given-names></name> <name><surname>Mohammedsaleh</surname> <given-names>ZM</given-names></name> <name><surname>Makharita</surname> <given-names>RR</given-names></name></person-group>. <article-title>Novel molecular markers linked to <italic>Pseudomonas aeruginosa</italic> epidemic high-risk clones</article-title>. <source>Antibiotics</source>. (<year>2021</year>) <volume>10</volume>:<fpage>35</fpage>. doi: <pub-id pub-id-type="doi">10.3390/antibiotics10010035</pub-id></citation></ref>
<ref id="ref64"><label>64.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Haenni</surname> <given-names>M</given-names></name> <name><surname>Hocquet</surname> <given-names>D</given-names></name> <name><surname>Ponsin</surname> <given-names>C</given-names></name> <name><surname>Cholley</surname> <given-names>P</given-names></name> <name><surname>Guyeux</surname> <given-names>C</given-names></name> <name><surname>Madec</surname> <given-names>JY</given-names></name> <etal/></person-group>. <article-title>Population structure and antimicrobial susceptibility of <italic>Pseudomonas aeruginosa</italic> from animal infections in France</article-title>. <source>BMC Vet Res</source>. (<year>2015</year>) <volume>11</volume>:<fpage>9</fpage>&#x2013;<lpage>5</lpage>. doi: <pub-id pub-id-type="doi">10.1186/s12917-015-0324-x</pub-id>, PMID: <pub-id pub-id-type="pmid">25604773</pub-id></citation></ref>
<ref id="ref65"><label>65.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>Y</given-names></name> <name><surname>Wang</surname> <given-names>X</given-names></name> <name><surname>Schwarz</surname> <given-names>S</given-names></name> <name><surname>Zhang</surname> <given-names>R</given-names></name> <name><surname>Lei</surname> <given-names>L</given-names></name> <name><surname>Liu</surname> <given-names>X</given-names></name> <etal/></person-group>. <article-title>IMP-45-producing multidrug-resistant <italic>Pseudomonas aeruginosa</italic> of canine origin</article-title>. <source>J Antimicrob Chemother</source>. (<year>2014</year>) <volume>69</volume>:<fpage>2579</fpage>&#x2013;<lpage>81</lpage>. doi: <pub-id pub-id-type="doi">10.1093/jac/dku133</pub-id>, PMID: <pub-id pub-id-type="pmid">24777897</pub-id></citation></ref>
<ref id="ref66"><label>66.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fernandes</surname> <given-names>MR</given-names></name> <name><surname>Sellera</surname> <given-names>FP</given-names></name> <name><surname>Moura</surname> <given-names>Q</given-names></name> <name><surname>Carvalho</surname> <given-names>MPN</given-names></name> <name><surname>Rosato</surname> <given-names>PN</given-names></name> <name><surname>Cerdeira</surname> <given-names>L</given-names></name> <etal/></person-group>. <article-title>Zooanthroponotic transmission of drug-resistant <italic>Pseudomonas aeruginosa</italic></article-title>. <source>Brazil Emerg Infect Dis</source>. (<year>2018</year>) <volume>24</volume>:<fpage>1160</fpage>&#x2013;<lpage>2</lpage>. doi: <pub-id pub-id-type="doi">10.3201/eid2406.180335</pub-id>, PMID: <pub-id pub-id-type="pmid">29774849</pub-id></citation></ref>
<ref id="ref67"><label>67.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Muscarella</surname> <given-names>LF</given-names></name></person-group>. <article-title>Contribution of tap water and environmental surfaces to nosocomial transmission of antibiotic-resistant <italic>Pseudomonas aeruginosa</italic></article-title>. <source>Infect Control Hosp Epidemiol</source>. (<year>2004</year>) <volume>25</volume>:<fpage>342</fpage>&#x2013;<lpage>5</lpage>. doi: <pub-id pub-id-type="doi">10.1086/502402</pub-id>, PMID: <pub-id pub-id-type="pmid">15108733</pub-id></citation></ref>
<ref id="ref68"><label>68.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Suarez</surname> <given-names>C</given-names></name> <name><surname>Pe&#x00F1;a</surname> <given-names>C</given-names></name> <name><surname>Arch</surname> <given-names>O</given-names></name> <name><surname>Dominguez</surname> <given-names>MA</given-names></name> <name><surname>Tubau</surname> <given-names>F</given-names></name> <name><surname>Juan</surname> <given-names>C</given-names></name> <etal/></person-group>. <article-title>A large sustained endemic outbreak of multiresistant <italic>Pseudomonas aeruginosa</italic>: a new epidemiological scenario for nosocomial acquisition</article-title>. <source>BMC Infect Dis</source>. (<year>2011</year>) <volume>11</volume>:<fpage>272</fpage>. doi: <pub-id pub-id-type="doi">10.1186/1471-2334-11-272</pub-id>, PMID: <pub-id pub-id-type="pmid">21995287</pub-id></citation></ref>
<ref id="ref69"><label>69.</label> <citation citation-type="journal"><person-group person-group-type="author"><name><surname>Voor in&#x2019;t Holt</surname> <given-names>AF</given-names></name> <name><surname>Severin</surname> <given-names>JA</given-names></name> <name><surname>Hagenaars</surname> <given-names>MBH</given-names></name> <name><surname>de Goeij</surname> <given-names>I</given-names></name> <name><surname>Gommers</surname> <given-names>D</given-names></name> <name><surname>Vos</surname> <given-names>MC</given-names></name></person-group>. <article-title>VIM-positive <italic>Pseudomonas aeruginosa</italic> in a large tertiary care hospital: matched case-control studies and a network analysis</article-title>. <source>Antimicrob Resist Infect Control</source>. (<year>2018</year>) <volume>7</volume>:<fpage>32</fpage>&#x2013;<lpage>10</lpage>. doi: <pub-id pub-id-type="doi">10.1186/s13756-018-0325-1</pub-id>, PMID: <pub-id pub-id-type="pmid">29492262</pub-id></citation></ref>
</ref-list>
<fn-group>
<fn id="fn0003">
<p><sup>1</sup><ext-link xlink:href="https://pubmlst.org/bigsdb?db=pubmlst_paeruginosa_seqdef" ext-link-type="uri">https://pubmlst.org/bigsdb?db=pubmlst_paeruginosa_seqdef</ext-link>
</p>
</fn>
<fn id="fn0004">
<p><sup>2</sup><ext-link xlink:href="https://pubmlst.org/paeruginosa/" ext-link-type="uri">https://pubmlst.org/paeruginosa/</ext-link>; accessed on 5 February 2022</p>
</fn>
<fn id="fn0005">
<p><sup>3</sup><ext-link xlink:href="https://itol.embl.de/" ext-link-type="uri">https://itol.embl.de/</ext-link>
</p>
</fn>
<fn id="fn0006">
<p><sup>4</sup><ext-link xlink:href="http://goeBURST.phyloviz.net" ext-link-type="uri">http://goeBURST.phyloviz.net</ext-link>
</p>
</fn>
<fn id="fn0007">
<p><sup>5</sup><ext-link xlink:href="https://www.mhlw.go.jp/content/10900000/000885373.pdf" ext-link-type="uri">https://www.mhlw.go.jp/content/10900000/000885373.pdf</ext-link>
</p>
</fn>
</fn-group>
</back>
</article>