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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Trop. Dis</journal-id>
<journal-title>Frontiers in Tropical Diseases</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Trop. Dis</abbrev-journal-title>
<issn pub-type="epub">2673-7515</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fitd.2023.1113531</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Tropical Diseases</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Patterns of <italic>Aedes aegypti</italic> abundance, survival, human-blood feeding and relationship with dengue risk, Kenya</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Kamau</surname>
<given-names>Winnie W.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sang</surname>
<given-names>Rosemary</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1048962"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Rotich</surname>
<given-names>Gilbert</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Agha</surname>
<given-names>Sheila B.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Menza</surname>
<given-names>Nelson</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Torto</surname>
<given-names>Baldwyn</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/886825"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Tchouassi</surname>
<given-names>David P.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1030580"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>International Centre of Insect Physiology and Ecology</institution>, <addr-line>Nairobi</addr-line>, <country>Kenya</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Kenyatta University</institution>, <addr-line>Nairobi</addr-line>, <country>Kenya</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Department of Zoology and Entomology, University of Pretoria</institution>, <addr-line>Pretoria</addr-line>, <country>South Africa</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: David Weetman, Liverpool School of Tropical Medicine, United Kingdom</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Luca Facchinelli, Liverpool School of Tropical Medicine, United Kingdom; Athanase Badolo, University of Ouagadougou, Burkina Faso</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: David P. Tchouassi, <email xlink:href="mailto:dtchouassi@icipe.org">dtchouassi@icipe.org</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Vector Biology, a section of the journal Frontiers in Tropical Diseases</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>06</day>
<month>02</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>4</volume>
<elocation-id>1113531</elocation-id>
<history>
<date date-type="received">
<day>01</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>23</day>
<month>01</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Kamau, Sang, Rotich, Agha, Menza, Torto and Tchouassi</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Kamau, Sang, Rotich, Agha, Menza, Torto and Tchouassi</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Dengue virus (DENV) transmission risk is influenced by the bionomic traits of the key vector, <italic>Aedes aegypti</italic>. We investigated patterns of abundance, survival, and human blood-feeding of <italic>Ae. aegypti</italic> populations in two environments in Kenya: peri-urban Rabai (coastal Region, dengue-endemic) and rural Kerio Valley (Rift Valley Region, no reported dengue outbreak). In both environments, <italic>Ae. aegypti</italic> survival (estimated by parity), was inversely correlated with vector abundance, and this was influenced by weather conditions, notably temperature and relative humidity. In Rabai, <italic>Ae. aegypti</italic> mostly fed on humans (human blood index=51%), a pattern that corroborates with dengue cases in the coastal region. <italic>Aedes aegypti</italic> additionally, exhibited opportunistic feeding (livestock, rodents, reptiles, birds), suggesting the risk of human exposure to zoonotic pathogens <italic>via</italic> spillover transmission events aided by the vector. Abundance and human blood-feeding rates were consistently lower in Kerio Valley likely related to the degree of urbanization. Remarkably, the periods of high human feeding in Rabai coincided with high vector survival rates, a trend that could potentially drive intense DENV transmission at certain times of the year. We found a genetic influence of <italic>Ae. aegypti</italic> on the degree of anthropophagy but this could be influenced by potential seasonal shifts in human feeding. The findings of this study have implications both for DENV transmission risk and vector control strategies, but also in modeling which should integrate vector bionomic factors beyond vector abundance.</p>
</abstract>
<kwd-group>
<kwd>
<italic>Aedes aegypti</italic>
</kwd>
<kwd>genetic forms</kwd>
<kwd>vector survival</kwd>
<kwd>human feeding</kwd>
<kwd>vectorial capacity</kwd>
<kwd>dengue risk</kwd>
<kwd>urbanisation</kwd>
<kwd>sub-Saharan Africa</kwd>
</kwd-group>
<counts>
<fig-count count="2"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="61"/>
<page-count count="8"/>
<word-count count="4488"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Dengue has re-emerged as one of the most important infectious arboviral diseases across the globe and it is exerting a toll not only on human health but also on the economic development of affected countries (<xref ref-type="bibr" rid="B1">1</xref>). The disease is caused by four distinct dengue virus (DENV) serotypes namely Dengue 1, 2, 3 and 4, which are transmitted to humans primarily through the bite of an infected <italic>Aedes aegypti</italic> mosquito (<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B3">3</xref>). According to the WHO, about half of the world&#x2019;s population is currently at risk of dengue infection, especially in tropical and subtropical areas. Globally, dengue cases have increased &gt;10-fold between 2000 and 2019 (500,000 to 5.2 million), indicating expanding epidemiology of the disease. Reported deaths increased four-fold during the same period (~1000 in 2000 to ~4000 in 2015) (<xref ref-type="bibr" rid="B1">1</xref>). The global trend is unparalleled in the eastern African region where frequent dengue outbreaks continue to occur in Kenya and in neighboring countries like Tanzania, Somalia, Djibouti, Eritrea, Sudan and Ethiopia (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B4">4</xref>&#x2013;<xref ref-type="bibr" rid="B8">8</xref>). For instance, in Kenya the public health impact of dengue has continued to rise sharply, with successive recent outbreaks (between 2011-2022) resulting in hundreds of thousands of human cases and multiple fatalities (<xref ref-type="bibr" rid="B9">9</xref>). These frequent outbreaks and the co-circulation of all four DENV serotypes (<xref ref-type="bibr" rid="B10">10</xref>) are an indication of the significant burden posed by dengue.</p>
<p>The geographic spread of dengue occurs in part against a backdrop of limited understanding of the transmission dynamics, and ecology, including the bionomic role of geographic populations of the known vectors. Convergence in the basic components of the disease cycle: the virus, vector, and susceptible human hosts; in a permissive environment, provides the necessary ingredients that facilitate local arboviral pathogen emergence (<xref ref-type="bibr" rid="B11">11</xref>, <xref ref-type="bibr" rid="B12">12</xref>). Yet, amidst the geographic spread, dengue risk patterns at local scales can be substantially heterogeneous (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B13">13</xref>, <xref ref-type="bibr" rid="B14">14</xref>). A better understanding of the complex interactions among these factors is required to predict the risk of dengue spread (<xref ref-type="bibr" rid="B15">15</xref>), but knowledge on vector populations and adaptation under changing habitat conditions are critical to achieving this.</p>
<p>Epidemic dengue cycles occurring in urban/peri-urban environments are increasing in eastern Africa and are driven primarily by the adaptation and expansion of vector range (e.g., <italic>Ae. aegypti</italic>) (<xref ref-type="bibr" rid="B16">16</xref>). Tracking changes in relevant biological parameters that define vectorial capacity can improve the prediction and response to infections or outbreaks in a timely manner (<xref ref-type="bibr" rid="B17">17</xref>, <xref ref-type="bibr" rid="B18">18</xref>). Key among these is human blood-feeding preference (including multiple feeding) and survival (longevity) of the vector which controls opportunities for infection and transmission intensity (<xref ref-type="bibr" rid="B19">19</xref>&#x2013;<xref ref-type="bibr" rid="B21">21</xref>). Besides density, measuring these vector traits in natural mosquito populations could be useful in risk assessment and to guide the implementation of vector control strategies. Mosquito longevity is a limiting factor for the transmission of arboviral pathogens, as pathogens must undergo a period of development (extrinsic incubation period - EIP) within the vector before it becomes transmissible <italic>via</italic> the salivary glands. EIP is temperature-sensitive with mean values of 15 and 6.6 days estimated for DENV at 25&#xb0;C and 30&#xb0;C, respectively (<xref ref-type="bibr" rid="B22">22</xref>). Few studies especially in Africa have described components of vectorial capacity (VC) for <italic>Ae. aegypti</italic> mostly relating to human blood meal patterns (<xref ref-type="bibr" rid="B13">13</xref>, <xref ref-type="bibr" rid="B21">21</xref>, <xref ref-type="bibr" rid="B23">23</xref>). Also, survivorship of natural populations of <italic>Ae. aegypti</italic> is seldom estimated (<xref ref-type="bibr" rid="B20">20</xref>, <xref ref-type="bibr" rid="B24">24</xref>). Additionally, little information currently exists regarding possible differences in vector survival, as well as human blood-feeding among the two known ecotypes: the sylvan <italic>Ae. aegypti formosus</italic> and the domestic <italic>Ae</italic>. <italic>aegypti aegypti.</italic> Variations in virus vectoring abilities and geographic distribution between the forms have been described (<xref ref-type="bibr" rid="B21">21</xref>, <xref ref-type="bibr" rid="B25">25</xref>).</p>
<p>Weather parameters (e.g., temperature, rainfall, humidity) modulate various biological and behavioural processes of mosquito vectors. These and other non-climatic variables such as human mobility and urbanization have been implicated as important drivers of dengue spread and outbreak occurrence (<xref ref-type="bibr" rid="B15">15</xref>). How these factors interact to influence bionomic traits and local transmission has received little attention.</p>
<p>To improve our understanding of local-scale variation in dengue occurrence, this study investigated the survival and blood-feeding patterns of wild <italic>Ae. aegypti</italic> in two ecosystems that vary in dengue outbreak occurrences: peri-urban (coastal Rabai) and rural (Rift Valley Kerio Valley) in Kenya. Also, we examined the relationship between <italic>Ae. aegypti</italic> age structure and abundance and assessed whether the genetic variability in the vector corelates with the extent of human blood-feeding.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and methods</title>
<sec id="s2_1">
<title>Ethical approval</title>
<p>The study received approval from the Scientific Ethics Review Unit (SERU) of the Kenya Medical Research Institute (Protocol NO. SSC 2787). Additionally, consent was sought from household heads to set up traps around their homesteads.</p>
</sec>
<sec id="s2_2">
<title>Study sites</title>
<p>Host seeking female <italic>Ae. aegypti</italic> collected outdoors around residential areas in two environments- peri-urban environment (human density ~600/km<sup>2</sup>) in Rabai and rural environment (human density ~ 45/km<sup>2</sup>) in Kerio Valley (KV) were used in this study. Rabai (Kilifi County) is located northeast and ~25 km from Mombasa City in the dengue-endemic coastal Kenya (<xref ref-type="bibr" rid="B26">26</xref>) while KV with a history of YF outbreak (<xref ref-type="bibr" rid="B27">27</xref>) (no reported dengue outbreak) is in the Rift Valley Region (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). The larval habitats of <italic>Ae. aegypti</italic> differ in both areas, with KV providing a rural woodland setting with numerous tree holes for mosquito breeding as opposed to Rabai, a peri-urban setting providing common water storage containers for mosquitoes to breed in addition to outdoor breeding in plant axils and water receptacles.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Map of Kenya showing location of the study sites. The map was designed using ArcMap 10.2.2. with the ocean and lakes base layer derived from Natural Earth (<uri xlink:href="http://www.naturalearthdata.com/">http://www.naturalearthdata.com/</uri>, a free GIS data source). The locations were collected using a GPS gadget (garmin etrex 20, <uri xlink:href="https://buy.garmin.com/en-US/US/p/518046">https://buy.garmin.com/en-US/US/p/518046</uri>), and the county boundaries for Kenya derived from AfricaOpendata (<uri xlink:href="https://africaopendata.org/dataset/kenya-counties-shapefile">https://africaopendata.org/dataset/kenya-counties-shapefile</uri>, license Creative Commons).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fitd-04-1113531-g001.tif"/>
</fig>
</sec>
<sec id="s2_3">
<title>Mosquito surveys and weather parameters</title>
<p>
<italic>Aedes aegypti</italic> mosquitoes were trapped using CO<sub>2</sub>-baited BG-Sentinel traps supplemented with chemical attractants (<xref ref-type="bibr" rid="B28">28</xref>) at three-time points: KV (November 2019) and Rabai (August-September 2019; February 2020). Each trapping covered a period of 2-3 weeks. Being a day-active mosquito, traps were set outdoors around homesteads at 06:30 h and retrieved at 18:00 h on the same day. Sampling was intended to encompass a large spatial area per site. Collected samples were immobilised using triethylamine, preserved in liquid nitrogen in the field and transported to the laboratory at <italic>icipe</italic>. <italic>Ae. aegypti</italic> among the specimens were identified morphologically using taxonomic keys and then stored at -80&#xb0;C.</p>
<p>The weather-related parameters during the trapping periods were as follows: August-September 2019 (mean daily temperature=25.4&#xb0;C; mean daily rainfall=0.58mm; relative humidity=75.9%) and February 2020 (mean daily temperature=27.4&#xb0;C; mean daily rainfall=0.30mm; relative humidity=80.3%) in Rabai and November 2019 (mean daily temperature=19.9&#xb0;C; mean daily rainfall=3.76mm; relative humidity=72.4%) in KV. These were derived from sourced weather data for each study site using the GPS location data. Daily weather data including relative humidity, precipitation, and temperature during the trapping period was extracted from NASA (National Aeronautics and Space Administration) POWER (Prediction of Worldwide Energy Resource) at the NASA Langley Research Center - <uri xlink:href="https://power.larc.nasa.gov/">https://power.larc.nasa.gov/</uri>. This is a satellite sensed weather dataset derived from satellite imagery, ground observations and assimilation models. The platform provides global gridded daily meteorological data from 1981 to near real time at a spatial resolution of 0.5&#xb0;. Satellite-sensed weather data was used in place of the ground observed weather data due to large spatial gaps in weather station coverage in the study areas. Studies have proven that there is a strong correlation between the NASA data and ground station data (<xref ref-type="bibr" rid="B29">29</xref>, <xref ref-type="bibr" rid="B30">30</xref>).</p>
</sec>
<sec id="s2_4">
<title>Parity rate, daily survival, and longevity estimation</title>
<p>Adult female mosquitoes were dissected for parity (<xref ref-type="bibr" rid="B31">31</xref>), which estimates vector survival in natural populations. Daily survival rates were estimated from parity data for each sampling period as described previously (<xref ref-type="bibr" rid="B32">32</xref>) using the formula: <italic>P<sup>n</sup>
</italic> = <italic>M</italic>, where <italic>P</italic> is the daily survival rate, <italic>M</italic> the parity rate and <italic>n</italic> representing the gonotrophic cycle i.e., the number of days between adult female blood meal and first oviposition. Published data on parity for <italic>Ae. aegypti</italic> range from 3-4 days for populations outside of Africa (<xref ref-type="bibr" rid="B33">33</xref>&#x2013;<xref ref-type="bibr" rid="B36">36</xref>) and this reduces with dry conditions. For tropical Africa with much higher temperatures, we assumed a value of n=3. Mosquito longevity (life expectancy in days) was derived using the formula: 1/(-<italic>lnP</italic>) where <italic>P</italic> is the estimated daily survival rate (<xref ref-type="bibr" rid="B37">37</xref>).</p>
</sec>
<sec id="s2_5">
<title>Analysis of blood meals</title>
<p>Blood-fed specimens were individually dissected by separating the abdomen containing engorged blood from the head/thorax. The head/thorax was preserved for each mosquito and subjected to DNA extraction and molecular speciation (described below). Genomic DNA was extracted from the abdomen using the ISOLATE II Genomic DNA Kit (Bioline, Meridian Bioscience, Germany) as per the manufacturer&#x2019;s instructions. DNA was amplified by targeting a 500 bp fragment of the 12S mitochondrial rRNA gene using the primers 12S3F [5&#x2019;-GGGATTAGATACCCCACTATGC-3&#x2019;] and 12S5R [5&#x2019;-TGCTTACCATGTTACGACTT-3&#x2019;] (<xref ref-type="bibr" rid="B38">38</xref>) as described previously (<xref ref-type="bibr" rid="B18">18</xref>, <xref ref-type="bibr" rid="B26">26</xref>). PCRs in a 10 &#x3bc;l reaction volume comprised 2 &#x3bc;l 2x MyTaq Mix (Bioline, Germany), 10 &#x3bc;M of each primer, 0.2 U of Mytaq DNA polymerase and 1 &#x3bc;l of the template DNA (~20 ng). Thermal cycling conditions were 95&#xb0;C for 3&#xa0;min followed by 40 cycles at 95&#xb0;C for 20 s, 59&#xb0;C for 30 s and 72&#xb0;C for 30 s and 72&#xb0;C for 7&#xa0;min. Amplicons were resolved on 1.2% agarose gel electrophoresis against a 100bp DNA HyperLadder (Bioline, Meridian Bioscience, Tennessee, USA). The PCR products were purified using the SureClean Plus kit (Bioline, Meridian Bioscience) and outsourced to Macrogen Europe BV (Amsterdam, The Netherlands) for Sanger sequencing using the forward primer. DNA sequences were compared using the BLAST algorithm and the GenBank database (<uri xlink:href="http://blast.ncbi.nlm.nih.gov/Blast.cgi">http://blast.ncbi.nlm.nih.gov/Blast.cgi</uri>). Species level identification was determined when sequences exhibited &#x2265; 98% identity spanning at least 300 bp as described previously (<xref ref-type="bibr" rid="B18">18</xref>, <xref ref-type="bibr" rid="B26">26</xref>).</p>
</sec>
<sec id="s2_6">
<title>Discrimination of <italic>Ae. aegypti</italic> genetic forms among blood-fed specimens</title>
<p>The <italic>Ae. aegypti</italic> genetic forms, domestic <italic>Ae. aegypti aegypti</italic> (Aaa) and forest <italic>Ae. aegypti formosus</italic> (Aaf) cannot be reliably identified morphologically, requiring genetic approaches. To achieve this, genomic DNA was extracted from the head/thorax of each blood fed specimen as described above. PCR was then performed targeting an 860 bp barcode region of mitochondrial Cytochrome C Oxidase subunit 1 (<italic>CO1</italic>) gene. DNA was amplified using the primers CO1-22-F 5&#x2019;-TGTAATTGTAACAGCTCATGCA-3&#x2019; and CO1-22-R 5&#x2019;-AATGATCATAGAAGGGCTGGAC-3&#x2019; (<xref ref-type="bibr" rid="B39">39</xref>). This marker has shown utility in resolving differences between Aaa and Aaf (<xref ref-type="bibr" rid="B13">13</xref>) The PCR was performed using MyTaq HS Mix kit (Bioline, Germany), the reaction volume comprised of 5&#x3bc;l of 2xMytaq HS mix polymerase, 10 M of each primer and a template DNA of 2 &#x3bc;l using the thermal cycling conditions of 95&#xb0;C for 2&#xa0;min followed by 40 cycles at 95&#xb0;C for 30 s, 60&#xb0;C for 30 s and 72&#xb0;C for 45 s and 72&#xb0;C for 7&#xa0;min. Amplicons were confirmed by gel electrophoresis and the PCR products similarly purified and sequenced as explained earlier; however, in both the forward and reverse direction.</p>
<p>Cleaned sequences were aligned and maximum likelihood (ML) trees constructed with nodal support for the different groupings evaluated through 1000 bootstrap replications utilizing the Tamura 3-parameter with gamma distribution and proportion of invariant sites as best-fit model of sequence evolution. The haplotypes generated in this study were deposited in GenBank under accession numbers OP920609 - OP920647.</p>
</sec>
<sec id="s2_7">
<title>Statistical analyses</title>
<p>The parity rate calculated as the percentage of parous mosquitoes to the total number dissected was established for each trapping period and comparisons were made by Pearson chi-squared tests. The 95% confidence intervals (CIs) for the parity rates were estimated using <italic>binom</italic>.<italic>confint</italic>
</p>
<p>function. The human blood index (HBI) expressed as the proportion of blood-feeding on humans of the total number of engorged mosquitoes with successful host identification, was compared by trapping periods or mitochondrial <italic>COI</italic> lineages using Pearson chi-squared tests. All analyses were performed at &#x3b1;=0.05 level of significance using R v. 4.21.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>
<italic>Ae. aegypti</italic> survival rate varies by site and study periods</title>
<p>A total of 981 <italic>Ae. aegypti</italic> (non-blood fed) were successfully scored for parity from KV and Rabai across the three sampling periods recording an overall parous rate of 74.9% (735/981; 95%CI 72.1-77.5%). Parous rates in Rabai were 67.7% (212/313; 95%CI 62.4-72.7%) in August-September 2019 and 77.8% (277/356; 95%CI 73.2-81.8%) in February 2020, and 78.8% (246/312; 95%CI 74.0-83.0%) in KV in November 2019. Parous rates differed significantly only between the collection periods in Rabai (&#x3c7;<sup>2</sup> = 8.10, df = 1, p=0.004) (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). In Rabai, estimated daily survival rates ranged from 0.87 in August-September 2019 to 0.91 in February 2020.&#xa0;A value of 0.92 was estimated for KV in November 2019. Overall, estimated longevity ranged from 7.7 to 12.7 days across the periods (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Estimated parity, daily survival and age for <italic>Ae. Aegypti</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="bottom" align="center">Site</th>
<th valign="bottom" align="center">Survey period</th>
<th valign="bottom" align="center">Parity (% (n))</th>
<th valign="bottom" align="center">Daily survival rate</th>
<th valign="bottom" align="center">Longevity (days)</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="bottom" align="center">Rabai</td>
<td valign="bottom" align="center">August-September 2019</td>
<td valign="bottom" align="center">67.7 (313)<sup>a</sup>
</td>
<td valign="bottom" align="center">0.87</td>
<td valign="bottom" align="center">7.7</td>
</tr>
<tr>
<td valign="bottom" align="left"/>
<td valign="bottom" align="center">February 2020</td>
<td valign="bottom" align="center">77.9 (356)<sup>b</sup>
</td>
<td valign="bottom" align="center">0.91</td>
<td valign="bottom" align="center">12</td>
</tr>
<tr>
<td valign="bottom" align="center">Kerio Valley</td>
<td valign="bottom" align="center">November 2019</td>
<td valign="bottom" align="center">78.8 (312)<sup>b</sup>
</td>
<td valign="bottom" align="center">0.92</td>
<td valign="bottom" align="center">12.7</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Columns followed by different letters are significantly different at p&lt;0.05.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_2">
<title>
<italic>Ae. aegypti</italic> human feeding rates vary by area and survey period</title>
<p>Of the 53-blood fed <italic>Ae. aegypti</italic> analysed from both areas, blood meal sources were successfully profiled in 47 (88.7%) of which 44 (94%) were from Rabai and 3 (6%) from KV. Nine hosts were represented in individual blood meals with the highest proportion from humans (24/47; <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>). This was followed by blood meals from domestic dog (8/47), African giant pouched rat (4/47), lizard (3/47), and minor representation of domestic cat (2/47), goat (2/47), bat (1/47), tortoise (1/47) and mongoose (1/47). The hosts commonly utilised in both areas were humans, domestic dog and lizard (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>). The three engorged specimens from KV had each fed on mongoose, goat and African giant pouched rat. Collectively, the HBI was 51% (24/47), although when disaggregated by trapping period, the HBI varied from 0 (0/3) in KV, 0.33 (6/18) in Rabai August-September 2019, to 0.69 (18/26) in Rabai February-2020. The HBI was significantly different between the study periods in Rabai (&#x3c7;<sup>2 </sup>= 4.18, df = 1, p = 0.04).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>
<bold>(A)</bold> <italic>Aedes aegypti</italic>-host feeding associations and <bold>(B)</bold> Maximum-likelihood tree derived from <italic>cox1</italic> sequences of blood-fed specimens using a Tamura 3-parameter model with gamma distribution and proportion of invariant sites (746 nt). Bootstrap values are shown above relevant nodes. Sequence of <italic>Ae. albopictus</italic> indicated as outgroup. The scale-bar indicates the number of substitutions per site. Taxon abbreviations represent sampling sites with numbers corresponding to specific sequence samples: RAB, Rabai; KV, Kerio Valley. Sequences in bold font are samples that fed on humans. Sequences were submitted to GenBank with accession numbers OP920609 - OP920647.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fitd-04-1113531-g002.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>Human-biting <italic>Ae. aegypti</italic> represented among mitochondrial <italic>COI</italic> lineages</title>
<p>Next, we addressed whether human blood feeding rates varied between the <italic>Ae. aegypti</italic> genetic forms. Phylogenetic analysis was performed on sequences of 37 blood-fed <italic>Ae. aegypti</italic> (successful of the 47 processed) from both study areas (KV=1, Rabai=36). Two mitochondrial lineages were recovered in the maximum likelihood phylogenetic tree. Most of the specimens (n=30) clustered in lineage 1 containing the domestic form (<italic>Ae. aegypti aegypti</italic> &#x2014; GenBank Accession no: AF390098 and MF194022) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>). Lineage II grouped with the feral form (<italic>Ae. aegypti formosus</italic>&#x2014;GenBank Accession no. AY056597) and had few samples (n=7). Estimated HBI for lineage I was 0.53 (16/30) and 0.43 (3/7) for lineage II and the rates did not differ significantly (p=0.94). The one engorged specimen from KV represented in lineage I, had fed on rodent.</p>
</sec>
<sec id="s3_4">
<title>Mosquito survival is inversely related to trap densities</title>
<p>A summary of the parity rates, mean <italic>Ae. aegypti</italic> densities and prevailing weather conditions (mean temperature, relative humidity and rainfall) for each of the trapping periods are presented in <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>. Mean daily <italic>Ae. aegypti</italic> catches/trap were 2.9, 18.7 and 8.8 in KV (November 2019), Rabai in August-September 2019 and February 2020, respectively, and correlate inversely with respective parity rates during these periods. When data were stratified by trapping periods in coastal Rabai, we found increased mosquito survival with an increase in mean temperature (25.4&#xb0;C to 27.4&#xb0;C) and relative humidity (75.9 to 80.3) from August-September 2019 to February 2020 (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). Notably, both <italic>Ae. aegypti</italic> HBI and survival were higher in February 2020 than in August-September 2019 in coastal Rabai. Also, HBI values increased as rainfall decreased between the two trapping periods in Rabai with a similar inverse relationship observed between survival and rainfall.</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Summary of <italic>Ae. aegypti</italic> bionomic estimates in relation to weather variables during the trapping periods.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Site</th>
<th valign="middle" align="center">Period</th>
<th valign="middle" align="center">Survival</th>
<th valign="middle" align="center">HBI</th>
<th valign="middle" align="center">Density (n)</th>
<th valign="middle" align="center">Rainfall (mm)</th>
<th valign="middle" align="center">RH</th>
<th valign="middle" align="center">Temperature (&#xb0;C)</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="bottom" align="center">Rabai</td>
<td valign="middle" align="center">August-September 2019</td>
<td valign="middle" align="center">67.7</td>
<td valign="middle" align="center">0.29</td>
<td valign="middle" align="center">18.7 (n=67)</td>
<td valign="middle" align="center">0.6</td>
<td valign="middle" align="center">75.9</td>
<td valign="middle" align="center">25.4</td>
</tr>
<tr>
<td valign="bottom" align="center"/>
<td valign="middle" align="center">February 2020</td>
<td valign="middle" align="center">77.8</td>
<td valign="middle" align="center">0.69</td>
<td valign="middle" align="center">8.8 (n=68)</td>
<td valign="middle" align="center">0.3</td>
<td valign="middle" align="center">80.3</td>
<td valign="middle" align="center">27.4</td>
</tr>
<tr>
<td valign="bottom" align="center">Kerio Valley</td>
<td valign="middle" align="center">November 2019</td>
<td valign="middle" align="center">78.8</td>
<td valign="middle" align="center">0</td>
<td valign="middle" align="center">2.9 (n=70)</td>
<td valign="middle" align="center">3.8</td>
<td valign="middle" align="center">72.4</td>
<td valign="middle" align="center">19.9</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>n=number of trap replicates; HBI, human blood index; RH, relative humidity; Density, <italic>Ae. aegypti</italic> catches/trap.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>Like other mosquito-borne pathogens, the transmission efficiency of DENV is dependent on critical components of vectorial capacity such as mosquito density, survival and human feeding preference. Here, we document how these factors could interact with each other to influence dengue dynamics influenced by weather factors. We found variation in vector parameters as a function of trapping period, a pattern that appears to mirror the observed seasonal variation in transmission risk in the Kenyan coast (<xref ref-type="bibr" rid="B40">40</xref>, <xref ref-type="bibr" rid="B41">41</xref>).</p>
<p>Mosquito abundance increases the likelihood of vector-human contact and is an important parameter in climate-based models to predict dengue dynamics (<xref ref-type="bibr" rid="B42">42</xref>). While vector presence is a prerequisite for DENV transmission, increasingly, vector density could be a poor predictor of DENV infection risk in humans. For instance, an area with the lowest <italic>Ae. aegypti</italic> density in Vietnam displayed the highest incidence of dengue while the converse effect was true in another province (<xref ref-type="bibr" rid="B43">43</xref>). A similar inverse relationship between <italic>Ae. aegypti</italic> abundance and dengue endemicity was observed in Mexico (<xref ref-type="bibr" rid="B44">44</xref>). Also, higher abundance of <italic>Ae</italic>. <italic>aegypti</italic> in the Kenyan city of Kisumu than Mombasa, could not explain the lack of outbreaks in the former, yet recurrent in the latter (<xref ref-type="bibr" rid="B14">14</xref>). In our study, high vector survival rate was associated with reduced trap catches, a proxy for mosquito abundance. The strong association between mosquito age and dengue endemicity (<xref ref-type="bibr" rid="B44">44</xref>) or onset and offset of DENV transmission season (<xref ref-type="bibr" rid="B24">24</xref>), could indicate that vector demographic structure is a better predictor of dengue risk than density.</p>
<p>The estimated survival rates for <italic>Ae. aegypti</italic> from this study are consistent with the range of data for this species reported in the literature (parous rates: 27-92%) (<xref ref-type="bibr" rid="B24">24</xref>, <xref ref-type="bibr" rid="B35">35</xref>, <xref ref-type="bibr" rid="B45">45</xref>). Parity assumes age-independent survival (<xref ref-type="bibr" rid="B46">46</xref>), although Hugo et&#xa0;al. (<xref ref-type="bibr" rid="B24">24</xref>), found no difference employing age dependent and independent models in the estimation of mosquito age. The samples analyzed in our study were representative of captures over several days within a spatial scale for each trapping period potentially increasing the reliability of the estimates as previously suggested (<xref ref-type="bibr" rid="B46">46</xref>). Of note, parity estimates could be affected by the mosquito population recruitment whether growing, stable, or declining (<xref ref-type="bibr" rid="B47">47</xref>) which we did not assess at the different study sites.</p>
<p>The blood meal profiles for <italic>Ae. aegypti</italic> included humans but also a diverse range of animals. We observed a moderate HBI (0.51) in Rabai, a value which is comparable or even higher than the previously reported estimate (of 0.4) in coastal Kenya (<xref ref-type="bibr" rid="B13">13</xref>). In this study, <italic>Ae. aegypti</italic> is observed to exhibit zoophilic characteristics, an observation that contradicts the primarily anthropophilic behavior (HBI &gt; 0.87-1) of this species in other dengue endemic areas out of Africa (<xref ref-type="bibr" rid="B21">21</xref>, <xref ref-type="bibr" rid="B48">48</xref>, <xref ref-type="bibr" rid="B49">49</xref>). The difference in <italic>Ae. aegypti</italic> HBI could be related to the origin of the samples (indoor <italic>vs</italic> outdoor) and habitat (urban <italic>vs</italic> rural/sylvatic). Lower blood fed specimens were encountered in KV (n=3), none of which had fed on humans. Thus, the difference in <italic>Ae. aegypti</italic> blood feeding between Rabai and KV could relate to the degree of urbanization i.e., human population density, which is an important risk parameter of dengue risk (<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B14">14</xref>). The observation of a more anthropophilic population in Rabai compared to KV may also point to fundamental differences in the behavior of <italic>Ae. aegypti</italic> populations in areas/regions of differing dengue endemicity in Kenya which, requires further elucidation. While the blood meal data provides insights into the trophic habit of this species, this inference could be affected by the relatively low number of engorged specimens analyzed (n=53). Our trapping methodology mainly targeted host-seeking females generally biased against blood-feeding cohorts whose catches can be improved by incorporating resting collections (<xref ref-type="bibr" rid="B50">50</xref>).</p>
<p>Genetic differences underlie the preference for human over other vertebrate hosts between Aaa and Aaf (<xref ref-type="bibr" rid="B51">51</xref>). We asked whether this can be verified through correlational studies of the genetics and host meal sources of individually analysed wild blood-fed specimens. Our data show that the mt<italic>COI</italic> lineage that grouped with the domestic form Aaa was more associated with a higher human feeding rate (0.53 (16/30)) compared to the lineage having the feral form (0.43 (3/7) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>). We suspect that the lack of a significant difference in the human feeding rates between the lineages may have been masked by tropic shifts between the trapping periods observed at the coast. Our findings point to sympatric occurrence of <italic>Ae. aegypti</italic> ecotypes, however, with possible higher abundance of the domestic than feral form in coastal Kenya as previously suggested (<xref ref-type="bibr" rid="B13">13</xref>, <xref ref-type="bibr" rid="B52">52</xref>). The potential consequence of seasonality in their occurrence, biting patterns and effect on transmission risk merit additional studies. Feeding on diverse hosts including humans by both lineages representing the forms increases the risk of transmission to humans of diverse vector-borne pathogens (e.g., dengue, chikungunya, and Zika viruses) that are known to have animal reservoirs (<xref ref-type="bibr" rid="B53">53</xref>). The contribution of multiple human feeding, a common trait in <italic>Ae. aegypti</italic> (<xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B54">54</xref>) could not be determined based on the single marker used in our present study. PCR followed by amplicon sequencing analysis underestimates the resolution of multiple host meals from individually engorged mosquitoes compared to next-generation sequencing approaches (<xref ref-type="bibr" rid="B55">55</xref>, <xref ref-type="bibr" rid="B56">56</xref>).</p>
<p>Coastal Kenya has been particularly prone to multiple dengue outbreaks in the last decade (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B57">57</xref>) with annual upsurges experienced after the short and long rains typically between February and June (<xref ref-type="bibr" rid="B40">40</xref>, <xref ref-type="bibr" rid="B41">41</xref>). While rainfall may increase mosquito abundance and perhaps biting rates, the reasons for this outbreak occurrence patterns are not fully understood. Focusing on our coastal data, we analyzed trends in vector indices and weather-related variables during the two sampling periods of August-September 2019 and February 2020. The data showed that higher vector survival coincided with higher human feeding rates (i.e., HBI) in February 2020. Both values were consistently lower in August-September 2019 (Parity=77% <italic>vs</italic> 67% and HBI=69% <italic>vs</italic> 29% for February 2020 and September 2019, respectively). High human feeding rates have been shown to correlate with heightened period of dengue risk (33,54]. February 2020 are generally dry/cool periods which have been found to correlate positively with enhanced vector survival rates and dengue transmission as observed in Vietnam (<xref ref-type="bibr" rid="B24">24</xref>). Higher vector survival was associated with both increases in mean temperature and relative humidity, during this period compared to August-September 2019, suggesting them as influential factors affecting mosquito age (or longevity) consistent with previous findings (<xref ref-type="bibr" rid="B58">58</xref>). It is noteworthy that temperature increases including a 1&#xb0;C rise can accelerate a reduction in the extrinsic incubation period (EIP) and thereby, increase pathogen transmission potential (<xref ref-type="bibr" rid="B59">59</xref>). Our results suggest that intense DENV transmission and perhaps onset of outbreaks at specific times of the year may be punctuated by enhanced <italic>Ae. aegypti</italic> vectorial capacity linked to increased vector survival and human feeding in concert with suitable weather conditions. A convergence of these biotic and abiotic attributes could be critical in reinitiating the seasonal pattern of dengue virus transmission in coastal Kenya. The low temperature conditions, low human biting may have dampened the estimated dengue risk in KV despite evidence of high survival rates. It is also noteworthy that we assumed a uniform gonotrophic cycle (3 days) in our estimates of daily survival and longevity and this value has been observed to vary as a function of temperature and seasons (<xref ref-type="bibr" rid="B35">35</xref>, <xref ref-type="bibr" rid="B60">60</xref>). Thus, further studies should consider this likely discrepancy which could influence interpretation of the findings.</p>
</sec>
<sec id="s5" sec-type="conclusion">
<title>Conclusion</title>
<p>We conclude that, <italic>Ae. aegypti</italic> exhibits local variation in important components of vectorial capacity (VC)- abundance, survival, and human blood feeding. In coastal Rabai, vector density was inversely related to mosquito age which together with human feeding are the most sensitive VC parameters (<xref ref-type="bibr" rid="B20">20</xref>, <xref ref-type="bibr" rid="B26">26</xref>). Convergence of high survival and propensity to feed on humans as noted in coastal Rabai, could drive intense DENV transmission or onset of outbreaks at certain times of the year; however, in concert with suitable weather conditions. Genetic factors likely underpin the degree of anthropophagy in <italic>Ae. aegypti</italic> but may be influenced by potential seasonal shift in human feeding rates. Despite high representation of humans in the trophic habit, <italic>Ae. aegypti</italic> exhibited opportunistic feeding, a trend which increases human exposure to risk of zoonotic pathogens. Modeling transmission is increasingly seen as an important component of disease risk prediction. For dengue, quantifying transmission risk needs to integrate vector bionomic factors beyond abundance together with climatic parameters in simulation studies for reliability of any developed models (<xref ref-type="bibr" rid="B15">15</xref>, <xref ref-type="bibr" rid="B61">61</xref>).</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/supplementary material. Further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s7" sec-type="ethics-statement">
<title>Ethics statement</title>
<p>The study received approval from the Scientific Ethics Review Unit (SERU) of the Kenya 116 Medical Research Institute (Protocol NO. SSC 2787). Additionally, consent was sought from household heads to set up traps around their homesteads.</p>
</sec>
<sec id="s8" sec-type="author-contributions">
<title>Author contributions</title>
<p>Conceptualization, RS and DT. Investigation and Methodology, WK, RS, GR, DT. Data analyses, WK, DT. Validation, RS, DT. Supervision, RS, NM, DT. Funding acquisition, RS, BT, DT. Writing&#x2014;original draft, DT. Writing&#x2014;review and editing, WK, RS, GR, SA, NM, BT, DT. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s9" sec-type="funding-information">
<title>Funding</title>
<p>This study was conducted under the project Combatting Arthropod Pests for better Health, Food and Climate Resilience (CAP-Africa) funded by the Norwegian Agency for Development Cooperation (Norad) (Grant number: RAF-3058 KEN-18/0005). DT is supported by a Wellcome Trust International Intermediate Fellowship (222005/Z/20/Z). We gratefully acknowledge the financial support for this research by the following organizations and agencies: Swedish International Development Cooperation Agency (Sida), Swiss Agency for Development and Cooperation (SDC), Australian Centre for International Agricultural Research (ACIAR), Federal Democratic Republic of Ethiopia and the Government of the Republic of Kenya. The views expressed herein do not necessarily reflect the official opinion of the donors.</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We thank community members in the study areas who provided access to their homesteads. We are thankful to Emily Kimathi, <italic>icipe</italic>, Nairobi, for designing the map of the study sites.</p>
</ack>
<sec id="s10" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s11" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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