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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Toxicol.</journal-id>
<journal-title>Frontiers in Toxicology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Toxicol.</abbrev-journal-title>
<issn pub-type="epub">2673-3080</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1644119</article-id>
<article-id pub-id-type="doi">10.3389/ftox.2025.1644119</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Toxicology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Integral approach to organelle profiling in human iPSC-derived cardiomyocytes enhances <italic>in vitro</italic> cardiac safety classification of known cardiotoxic compounds</article-title>
<alt-title alt-title-type="left-running-head">Szabo et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/ftox.2025.1644119">10.3389/ftox.2025.1644119</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Szabo</surname>
<given-names>Brigitta R.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/3069477/overview"/>
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<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Stein</surname>
<given-names>Jeroen</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Savchenko</surname>
<given-names>Anna</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Hutschalik</surname>
<given-names>Thomas</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Van Nieuwerburgh</surname>
<given-names>Filip</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Meese</surname>
<given-names>Tim</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Kosmidis</surname>
<given-names>Georgios</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Volders</surname>
<given-names>Paul G. A.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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<contrib contrib-type="author" corresp="yes">
<name>
<surname>Matsa</surname>
<given-names>Elena</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/3081167/overview"/>
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<aff id="aff1">
<sup>1</sup>
<institution>Ncardia Services B.V.</institution>, <addr-line>Leiden</addr-line>, <country>Netherlands</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Cardiology, Cardiovascular Research Institute Maastricht (CARIM), Maastricht University Medical Center</institution>, <addr-line>Maastricht</addr-line>, <country>Netherlands</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Department of Physiology, Cardiovascular Research Institute Maastricht (CARIM), Maastricht University Medical Center</institution>, <addr-line>Maastricht</addr-line>, <country>Netherlands</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Laboratory of Pharmaceutical Biotechnology, Ghent University</institution>, <addr-line>Ghent</addr-line>, <country>Belgium</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Cellistic</institution>, <addr-line>Mont-Saint-Guibert</addr-line>, <country>Belgium</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>Western Gateway Building, School of Biochemistry and Cell Biology, University College Cork</institution>, <addr-line>Cork</addr-line>, <country>Ireland</country>
</aff>
<aff id="aff7">
<sup>7</sup>
<institution>National Institute for Bioprocessing Research and Training (NIBRT)</institution>, <addr-line>Dublin</addr-line>, <country>Ireland</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1941859/overview">Paola Occhetta</ext-link>, Polytechnic University of Milan, Italy</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1488091/overview">Viviana Meraviglia</ext-link>, Leiden University Medical Center (LUMC), Netherlands</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2335819/overview">Annie Delaunois</ext-link>, UCB Biopharma SPRL, Belgium</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Elena Matsa, <email>ematsa@ucc.ie</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>21</day>
<month>08</month>
<year>2025</year>
</pub-date>
<pub-date pub-type="collection">
<year>2025</year>
</pub-date>
<volume>7</volume>
<elocation-id>1644119</elocation-id>
<history>
<date date-type="received">
<day>09</day>
<month>06</month>
<year>2025</year>
</date>
<date date-type="accepted">
<day>30</day>
<month>07</month>
<year>2025</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2025 Szabo, Stein, Savchenko, Hutschalik, Van Nieuwerburgh, Meese, Kosmidis, Volders and Matsa.</copyright-statement>
<copyright-year>2025</copyright-year>
<copyright-holder>Szabo, Stein, Savchenko, Hutschalik, Van Nieuwerburgh, Meese, Kosmidis, Volders and Matsa</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Introduction</title>
<p>Efficient preclinical prediction of cardiovascular side effects poses a pivotal challenge for the pharmaceutical industry. Human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) are becoming increasingly important in this field due to inaccessibility of human native cardiac tissue. Current preclinical hiPSC-CMs models focus on functional changes such as electrophysiological abnormalities, however other parameters, such as structural toxicity, remain less understood.</p>
</sec>
<sec>
<title>Methods</title>
<p>This study utilized hiPSC-CMs from three independent donors, cultured in serum-free conditions, and treated with a library of 17 small molecules with stratified cardiac side effects. High-content imaging (HCI) targeting ten subcellular organelles, combined with multi-electrode array data, was employed to profile drug responses. Dimensionality reduction and clustering of the data were performed using principal component analysis (PCA) and sparse partial least squares discriminant analysis (sPLS-DA).</p>
</sec>
<sec>
<title>Results</title>
<p>Both supervised and unsupervised clustering revealed patterns associated with known clinical side effects. In supervised clustering, morphological features outperformed electrophysiological data alone, and the combined data set achieved a 76% accuracy in recapitulating known clinical cardiotoxicity classifications. RNA-sequencing of all drugs <italic>versus</italic> vehicle conditions was used to support the mechanistic insights derived from morphological profiling, validating the former as a valuable cardiotoxicity tool.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>Results demonstrate that a combined approach of analyzing morphology and electrophysiology enhances <italic>in-vitro</italic> prediction and understanding of drug cardiotoxicity. Our integrative approach introduces a potential framework that is accessible, scalable and better aligned with clinical outcomes.</p>
</sec>
</abstract>
<kwd-group>
<kwd>hiPSC-derived cardiomyocytes</kwd>
<kwd>organelle profiling</kwd>
<kwd>cardiac safety</kwd>
<kwd>
<italic>in vitro</italic> drug testing</kwd>
<kwd>fluorescence microscopy</kwd>
<kwd>cell painting</kwd>
<kwd>phenotypic screening</kwd>
</kwd-group>
<contract-sponsor id="cn001">Horizon 2020<named-content content-type="fundref-id">10.13039/501100007601</named-content>
</contract-sponsor>
<counts>
<page-count count="20"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>In Vitro Toxicology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>Novel drug candidate development can take over a decade and exceed a billion dollars to reach the clinic (<xref ref-type="bibr" rid="B47">Hinkson et al., 2020</xref>), with cost of failure as one of the main culprits (<xref ref-type="bibr" rid="B35">Duyk, 2003</xref>). It is estimated that in recent decades, 90% of pharmaceutical development failure occurred at the clinical phase (<xref ref-type="bibr" rid="B95">Sun et al., 2022</xref>). Consequently, the urgency for pharmaceutical companies to address financially taxing, high drug attrition rates keeps increasing. Failure due to cardiac-safety complications is common (<xref ref-type="bibr" rid="B107">Waring et al., 2015</xref>; <xref ref-type="bibr" rid="B95">Sun et al., 2022</xref>), accounting for approximately one-third of adverse drug reactions leading to attrition (<xref ref-type="bibr" rid="B38">Fermini et al., 2018</xref>). According to the Food and Drug Administration&#x2019;s (FDA) Adverse Event Reporting System for cardiovascular-related events, some of the most frequently listed categories include cardiac arrhythmia (often QT prolongation), cardiomyopathy, myocardial ischemia, and coronary-artery and valvular disorders (<xref ref-type="bibr" rid="B61">Laverty et al., 2011</xref>).</p>
<p>To this day, predictive models to determine the risk for these cardiovascular events with sufficient specificity and sensitivity are lacking. Numerous animal models have been utilized. However, their specificity at times can be low, resulting in ambiguous translational value (<xref ref-type="bibr" rid="B70">Lu et al., 2001</xref>; <xref ref-type="bibr" rid="B8">Bailey et al., 2014</xref>; <xref ref-type="bibr" rid="B27">Clark and Steger-Hartmann, 2018</xref>). Use of adult native cell types has also been plagued by low-efficiency and labor-intensive methods (<xref ref-type="bibr" rid="B68">Louch et al., 2011</xref>; <xref ref-type="bibr" rid="B73">Meki et al., 2021</xref>), in addition to their inadequate homogeneity, reproducibility, and <italic>ex vivo</italic> viability (<xref ref-type="bibr" rid="B6">Apati et al., 2019</xref>). Using an improved culture protocol of human heart slices, Miller et al. recapitulated clinically-observed cardiotoxic profiles of doxorubicin, trastuzumab, and sunitinib. However, the viability and functionality of these slices lasted only up to 6 days (<xref ref-type="bibr" rid="B74">Miller et al., 2020</xref>). In comparison, human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) can be maintained in culture for months (<xref ref-type="bibr" rid="B90">Seibertz et al., 2023</xref>), making them suitable for investigating chronic compound effects and development of pathophysiology (<xref ref-type="bibr" rid="B100">Tiburcy et al., 2017</xref>).</p>
<p>The relevance of hiPSC-CM models as accessible, affordable, and scalable alternatives (<xref ref-type="bibr" rid="B18">Burridge et al., 2014</xref>; <xref ref-type="bibr" rid="B41">Fowler et al., 2020</xref>) in safety-pharmacology research has been demonstrated (<xref ref-type="bibr" rid="B112">Yamamoto et al., 2016</xref>; <xref ref-type="bibr" rid="B4">Ando et al., 2017</xref>; <xref ref-type="bibr" rid="B12">Blinova et al., 2017</xref>; <xref ref-type="bibr" rid="B91">Sharma et al., 2017</xref>; <xref ref-type="bibr" rid="B13">Blinova et al., 2018</xref>; <xref ref-type="bibr" rid="B59">Kopljar et al., 2018</xref>; <xref ref-type="bibr" rid="B14">Blinova et al., 2019</xref>; <xref ref-type="bibr" rid="B42">Giovannetti and Peters, 2021</xref>; <xref ref-type="bibr" rid="B113">Yang et al., 2022</xref>), especially in the context of detecting (pro)arrhythmic events (<xref ref-type="bibr" rid="B112">Yamamoto et al., 2016</xref>; <xref ref-type="bibr" rid="B4">Ando et al., 2017</xref>; <xref ref-type="bibr" rid="B12">Blinova et al., 2017</xref>; <xref ref-type="bibr" rid="B13">Blinova et al., 2018</xref>; <xref ref-type="bibr" rid="B59">Kopljar et al., 2018</xref>; <xref ref-type="bibr" rid="B14">Blinova et al., 2019</xref>). Major initiatives such as the Comprehensive <italic>In Vitro</italic> ProArrhythmia Assay (CiPA) have established protocols to study the short-term proarrhythmic effects of compounds using multi-electrode array (MEA) or voltage-sensitive dyes (VSD) by recording changes in electrophysiology, particularly focusing on the human ether-a-go-go-related gene (hERG) potassium channel modulation (<xref ref-type="bibr" rid="B12">Blinova et al., 2017</xref>; <xref ref-type="bibr" rid="B13">Blinova et al., 2018</xref>; <xref ref-type="bibr" rid="B14">Blinova et al., 2019</xref>). Despite high predictive power, such assays are unable to detect all types of cellular toxicities.</p>
<p>Most conventional screening assays focus only on a singular/few, readily interpretable functional parameters for analysis&#x2013;such as alterations in action potential recordings&#x2013;which can be directly correlated to specific biological functions or processes. While effective at precisely detecting certain abnormalities, these measurements may not fully capture the complexity of drug-induced cardiotoxicity, which requires a more integral approach. With the FDA phasing out animal testing for new drug candidates (<xref ref-type="bibr" rid="B116">Zushin et al., 2023</xref>) and the development of the EU Roadmap for Phasing Out Animal Experimentation (<xref ref-type="bibr" rid="B105">Walder et al., 2025</xref>), establishing integral <italic>in vitro</italic> cardiotoxicity models is timelier than ever. Through newly-emerging technologies, it is possible to analyze combinations of complex (sub)cellular morphological features, allowing for a more precise description of the sample condition (<xref ref-type="bibr" rid="B22">Chandrasekaran et al., 2021</xref>) &#x2013; the morphological profiles generated are unique to the given condition in a similar fashion as a fingerprint would be to an individual. Current efforts such as the JUMP Cell Painting Consortium aim to standardize this approach and expand databases for enhanced drug safety assessments, however they are focused only on a few cell models including immortalized cancer cell lines, limiting their translational potential (<xref ref-type="bibr" rid="B26">Cimini et al., 2023</xref>; <xref ref-type="bibr" rid="B23">Chandrasekaran et al., 2024</xref>).</p>
<p>Incorporating novel morphological assays with established functional readouts could promote a cardiac safety paradigm shift towards combinatorial characterization, thereby improving the accuracy and resolution of hiPSC-CM models. In order to realize this, the present study relied on morphological profiling to accurately assess drug toxicity, facilitated by high-content imaging (HCI), a powerful tool for identifying potential drug targets and uncovering mechanisms of action (<xref ref-type="bibr" rid="B15">Bray et al., 2016</xref>; <xref ref-type="bibr" rid="B79">Pahl and Sievers, 2019</xref>). Quantitative data was extracted from acquired images of hiPSC-CMs stained by combinations of distinct markers for an array of ten subcellular organelles. This rich compilation of data was then utilized for clustering of potential cardio-toxicants, showing strong alignment with clinical classifications. The complementary nature of traditional functional assays, such as electrophysiology recordings to these readouts and <italic>vice versa</italic>, were investigated, demonstrating improved toxicity detection with the integrated approach. Moreover, RNA sequencing (RNA-seq) of compound-treated samples was performed to further elucidate the underlying transcriptional mechanisms of the cardiotoxic effects.</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>2 Materials and methods</title>
<sec id="s2-1">
<title>2.1 hiPSC-CM plating and compound treatment</title>
<p>Cryopreserved hiPSC-CMs were thawed and precultured in fibronectin-coated (1:100) T75 flasks for 3 days, in Ncardia&#x2019;s proprietary Cardiomyocyte Culture Medium, prior to being reseeded onto appropriate plate formats for compound assays. hiPSC-CM cultures were dissociated using 1X TrypLE&#x2122; Select Enzyme (Gibco&#x2122;) and kept in serum-containing culture medium. On day 1, culture medium was switched to serum-free medium composition. hiPSC-CMs were maintained at 37&#xb0;C and 5% CO<sub>2</sub> with regular medium changes every 48&#xa0;h. Only for the experiments relating to the assessment of the culture medium compositions, hiPSC-CMs were kept in culture for up to 14 days post seeding. After ascertaining the most suitable timepoint for all subsequent assays (day 8), all compound treatments began on day 7 post seeding, during which 3&#x2013;6 replicates were exposed to one concentration of a single compound or to vehicle control (0.1% DMSO) for 24&#xa0;h. Compound solutions were administered at final concentration of 0.1% DMSO (<xref ref-type="table" rid="T1">Table 1</xref>).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Compound library and experimental concentration ranges used across assays.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th rowspan="2" align="left">Compound</th>
<th rowspan="2" align="left">Cmax (total)</th>
<th colspan="2" align="center">Cexp</th>
</tr>
<tr>
<th align="center">HCI and MEA</th>
<th align="center">RNA-seq</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Doxorubicin</td>
<td align="center">1.3&#x2013;6.8&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B102">Twelves et al., 1991</xref>)</td>
<td align="center">0.01&#x2013;10&#xa0;&#xb5;M</td>
<td align="center">0.1&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Cisplatin</td>
<td align="center">6&#x2013;18&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B33">de Jong et al., 2023</xref>)</td>
<td align="center">0.01&#x2013;10&#xa0;&#xb5;M</td>
<td align="center">10&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Ponatinib</td>
<td align="center">0.05&#x2013;0.18&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B29">Cortes et al., 2012</xref>)</td>
<td align="center">0.001&#x2013;1&#xa0;&#xb5;M</td>
<td align="center">1&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Dasatinib</td>
<td align="center">0.15&#x2013;0.37&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B97">Takahashi et al., 2012</xref>)</td>
<td align="center">0.001&#x2013;1&#xa0;&#xb5;M</td>
<td align="center">0.3&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Lapatinib</td>
<td align="center">1.3&#x2013;7.4&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B19">Burris et al., 2005</xref>; <xref ref-type="bibr" rid="B25">Chu et al., 2007</xref>)</td>
<td align="center">0.01&#x2013;10&#xa0;&#xb5;M</td>
<td align="center">10&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">5-Fluoro-uracil</td>
<td align="center">19.3&#x2013;23&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B20">Capitain et al., 2008</xref>)</td>
<td align="center">0.01&#x2013;10&#xa0;&#xb5;M</td>
<td align="center">10&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Methotrexate</td>
<td align="center">0.01&#x2013;0.1&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B54">Inoue and Yuasa, 2014</xref>)</td>
<td align="center">0.001&#x2013;1&#xa0;&#xb5;M</td>
<td align="center">1&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Omecamtiv Mecarbil</td>
<td align="center">22.4 nM&#x2013;2.5&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B98">Teerlink et al., 2011</xref>)</td>
<td align="center">0.001&#x2013;1&#xa0;&#xb5;M</td>
<td align="center">1&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Propofol</td>
<td align="center">21.9&#x2013;56&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B37">Fan et al., 1995</xref>; <xref ref-type="bibr" rid="B11">Bleeker et al., 2008</xref>)</td>
<td align="center">0.1&#x2013;100&#xa0;&#xb5;M</td>
<td align="center">100&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Bupivacaine</td>
<td align="center">1.6&#x2013;5&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B51">Hu et al., 2013</xref>)</td>
<td align="center">0.01&#x2013;10&#xa0;&#xb5;M</td>
<td align="center">10&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Amiodarone</td>
<td align="center">0.7&#x2013;3.6&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B104">Vassallo and Trohman, 2007</xref>)</td>
<td align="center">0.01&#x2013;10&#xa0;&#xb5;M</td>
<td align="center">1&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Dofetilide</td>
<td align="center">3.8 nM&#x2013;23&#xa0;nM (<xref ref-type="bibr" rid="B3">Allen et al., 2000</xref>)</td>
<td align="center">0.0001&#x2013;0.1&#xa0;&#xb5;M</td>
<td align="center">0.01&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Digoxin</td>
<td align="center">1&#x2013;2.56&#xa0;nM (<xref ref-type="bibr" rid="B43">Gona et al., 2023</xref>)</td>
<td align="center">0.00001&#x2013;0.01&#xa0;&#xb5;M</td>
<td align="center">0.01&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Chlorpromazine</td>
<td align="center">16&#xa0;nM&#x2013;560&#xa0;nM (<xref ref-type="bibr" rid="B85">Rivera-Calimlim, 1982</xref>)</td>
<td align="center">0.001&#x2013;1&#xa0;&#xb5;M</td>
<td align="center">1&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Erlotinib</td>
<td align="center">1.2 nM - 5.9&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B45">Gruber et al., 2018</xref>)</td>
<td align="center">0.01&#x2013;10&#xa0;&#xb5;M</td>
<td align="center">0.3&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">ASA</td>
<td align="center">27&#x2013;77&#xa0;&#xb5;M (<xref ref-type="bibr" rid="B57">Kanani et al., 2015</xref>)</td>
<td align="center">0.01&#x2013;10&#xa0;&#xb5;M</td>
<td align="center">10&#xa0;&#xb5;M</td>
</tr>
<tr>
<td align="left">Empagliflozin</td>
<td align="center">&#x223c;665&#xa0;nM (<xref ref-type="bibr" rid="B88">Scheen, 2014</xref>)</td>
<td align="center">0.001&#x2013;1&#xa0;&#xb5;M</td>
<td align="center">1&#xa0;&#xb5;M</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Summary of 17 reference compounds used in this study, including reported clinical maximum total plasma concentrations (Cmax) from literature, and experimental concentration ranges applied in high content imaging (HCI), multi-electrode array recordings (MEA) and RNA sequencing (RNA-seq). HCI and MEA assays were performed across a 7-point semi-logarithmic concentration range, while RNA-seq was conducted at a single selected concentration per compound.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s2-2">
<title>2.2 Immunofluorescence staining and HCI protocol</title>
<p>Compound treated hiPSC-CMs seeded onto 384 well &#xb5;Clear black plates (Greiner) at a density of 2,000 cells per well, were stained for selected target structures. Live cell staining&#x2013;MitoTracker CMXRos Red (25&#xa0;nM) for 1&#xa0;h; LysoTracker Red (75&#xa0;nM) for 30&#xa0;min at 37&#xb0;C - was performed preceding fixation of samples using 4% methanol-free paraformaldehyde for 15&#xa0;min at room temperature (RT). Next, cells were permeabilized with 0.01% Triton-X diluted in DPBS (&#x2212;/&#x2212;) for 15&#xa0;min at RT. Primary antibody (Ab) mixes (<xref ref-type="sec" rid="s12">Supplementary Table S1</xref>) were prepared in blocking solution containing 10% fetal bovine serum using 1:1,000 dilution scheme with the exception of the anti-PMP70 which was diluted to 1:500. Samples were incubated overnight at 4&#xb0;C then washed thrice with 0.01% Triton-X. Appropriate secondary Ab mixes (1:500 dilution) were added for 2&#xa0;h at room temperature. Concanavalin (200&#xa0;&#x3bc;g/mL) staining for 1&#xa0;h and Wheat Germ Agglutinin (5&#xa0;&#x3bc;g/mL) for 10&#xa0;min preceded nuclear staining with DAPI (1:1,000, 15&#xa0;min at RT). Lastly, cells were washed thrice with 0.01% Triton-X as well as with DPBS (&#x2212;/&#x2212;).</p>
<p>High-magnification images (40&#xd7;) were acquired using an ImageXpress Micro Confocal platform (Molecular Devices) in confocal mode. Images were analyzed in MetaXpress software version 6.6, using the Custom Module Editor, in which unique masks were designed to detect each subcellular component on a single-cell level (<xref ref-type="sec" rid="s12">Supplementary Figure S1</xref>). Signals corresponding to nucleoli (anti-fibrillarin Ab) and DNA damage (anti-&#x3b3;H2AX Ab) were detected within the area corresponding to nuclei (DAPI), and remaining organelles within the segmented cytoplasmic area. During image analysis, the fluorescence threshold was not set as an absolute value for signal quantification but as an intensity difference to local background ensuring comparable noise to signal ratio for each dataset of an immunofluorescence staining experiment.</p>
</sec>
<sec id="s2-3">
<title>2.3 RNA-sequencing experimental procedure</title>
<p>On day 8, post 24-h compound treatment cell samples were collected from hiPSC-CMs for RNA extraction. For each compound, the treatment concentration was selected as the dose that elicited the largest functional effect on MEA recordings without causing significant loss of viability (<xref ref-type="table" rid="T1">Table 1</xref>), so as to not bias mechanistic analysis towards cell death pathways and allow elucidation of causative toxicity mechanisms. RNA was isolated using the NucleoSpin RNA kit (Bioke) according to the manufacturer&#x2019;s protocol.</p>
<p>After RNA extraction, the concentration and quality of the total extracted RNA were evaluated by using the &#x201c;Quant-it ribogreen RNA assay&#x201d; (Life Technologies) and the RNA 6000 Nano chip (Agilent Technologies), respectively. Subsequently, 10&#xa0;ng of RNA was used to perform an Illumina sequencing library preparation using the QuantSeq 3&#x2032; mRNA-Seq Library Prep FWD Kit (Lexogen) per manufacturer&#x2019;s instructions. During library preparation, 17 PCR cycles were used. Libraries were quantified by qPCR, according to Illumina&#x2019;s protocol &#x2018;Sequencing Library qPCR Quantification protocol guide&#x2019;, version February 2011. A High Sensitivity DNA chip (Agilent Technologies) was used to control the library&#x2019;s size distribution and quality. Sequencing was performed on a high throughput Illumina NextSeq 500 flow cell generating 75 bp single reads.</p>
</sec>
<sec id="s2-4">
<title>2.4 Bioinformatic analysis</title>
<sec id="s2-4-1">
<title>2.4.1 Imaging dataset</title>
<p>Imaging-derived features exported from MetaXpress software as. txt files were analyzed using R studio (R v.4.2.3) following the steps detailed below (<xref ref-type="fig" rid="F1">Figure 1</xref>). Quality control involved exclusion of conditions with undetectable signals, as well as outlier filtering based on cytoplasmic area as correct detection of cytoplasmic area served as the basis of further cell segmentation steps. Outlier filtering was performed using a median absolute deviation (MAD) thresholding approach. For each dataset (i.e., cell line/batch and staining protocol), cells were flagged as outliers if their cytoplasmic area deviated from the median by more than three MADs. A threshold of three MADs was applied in alignment with statistical practices and to ensure conservative exclusion of extreme values in biologically variable datasets (<xref ref-type="bibr" rid="B62">Leys et al., 2013</xref>). Specifically, for each value (<italic>x</italic>) the outlier condition was defined as:<disp-formula id="equ1">
<mml:math id="m1">
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</mml:mrow>
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</disp-formula>where X is the vector of all values in that dataset. In cases where all values were identical (i.e., MAD &#x3d; 0), no outliers were removed, as cells were assumed to exhibit similar morphology. Additionally, to avoid errors by dividing zero by zero, any mathematically undefined results were treated as non-outliers as well. This approach ensured robust and reproducible outlier handling across all experimental batches.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Stepwise workflow of imaging-derived feature processing used for unsupervised and supervised toxicity classification.</p>
</caption>
<graphic xlink:href="ftox-07-1644119-g001.tif">
<alt-text content-type="machine-generated">Flowchart depicting a data processing workflow. Step 0: Quantitative data extraction from images. Step 1: Quality control includes removing undetectable signals and outliers based on cytoplasmic area, shown with a density plot. Step 2: Normalization to vehicle. Step 3: Near-zero variance feature removal. Step 4: Toxicity analysis involves individual parameter plotting with a line graph, unsupervised clustering shown with a heatmap, and supervised clustering represented by a scatter plot.</alt-text>
</graphic>
</fig>
<p>Post-filtering, data were aggregated at the replicate-level by calculating median values across all cells per replicate. Each replicate-level profile was then normalized to the median of the corresponding vehicle control. Non-informative features with near zero variance were identified and excluded from further analysis. Near zero variance was classified as meeting both of the following criteria: a high frequency ratio (default threshold: &#x3e;19, i.e., the most common value occurred 19 times more often than the second most common value), and a low proportion of unique values (&#x3c;10%). These thresholds were applied across the whole dataset to identify predictors with limited discriminatory value.</p>
<p>For unsupervised analysis (principal, component analysis; PCA), cell line-level aggregated data was used to identify broad phenotypic trends across donors. In addition, to capture phenotypic signals emerging at any level of exposure and to derive global conclusions, all seven concentrations tested per compound were pooled and treated as a single input group. This strategy allowed for the detection of emergent morphological patterns across all treatment levels without bias from donor-specific variability in dose-response thresholds. Absolute loading scores from principal component 1 (PC1) were averaged across lines to identify key features and generate compound-level toxicity clusters <italic>via</italic> k-means clustering.</p>
<p>In contrast, supervised classification was conducted using sparse partial least squares discriminant analysis (sPLS-DA) on replicate-level data from a single, well-characterized hiPSC-CM batch (Ncyte CM1). Similarly, as for RNA-seq, one concentration per compound was selected based on the strongest functional (MEA) effect without loss of viability (<xref ref-type="table" rid="T1">Table 1</xref>). This design minimized technical variability and enabled high-resolution compound discrimination and classification aligned with known clinical toxicity groupings.</p>
<p>All statistical analyses and visualizations were performed using established R packages: tidyverse (v.2.0.0), dplyr (v.1.1.4), caret (v.6.0.94), mixOmics (v.6.25.1), ggplot2 (v.3.5.1) and pheatmap (v.1.0.12).</p>
</sec>
<sec id="s2-4-2">
<title>2.4.2 Differential gene expression</title>
<p>Per sample, on average 5.7 &#xd7; 10<sup>6</sup> &#xb1; 1.3 &#xd7; 10<sup>6</sup> reads were generated. First, raw reads were quality and adapter trimmed with Trim Galore v.0.6.7. The trimmed reads were mapped against the human genome (GRCh38.104) with STAR v.2.7.9a. (<xref ref-type="bibr" rid="B34">Dobin et al., 2013</xref>). Unique Molecular Identifiers were used during the sequencing and were processed with UMI-tools v.1.1.2. (<xref ref-type="bibr" rid="B92">Smith et al., 2017</xref>). The RSEM software v.1.3.1 (<xref ref-type="bibr" rid="B63">Li and Dewey, 2011</xref>) was used to generate the count tables.</p>
<p>Differential gene expression&#x2013;in which the vehicle group was compared to a single compound group&#x2013;was performed using edgeR v.3.36.0. (<xref ref-type="bibr" rid="B71">Lun et al., 2016</xref>). For each separate analysis, included the following: (1) Normalization using edgeR&#x2019;s standard normalization method. (2) Removing low expressed genes with the filterByExpr function. (3) A general linear model was built with an empirical Bayes quasi-likelihood F-test to identify genes as significantly different if FDR &#x2264;0.05 and FC &#x2265; 1.</p>
<p>Genes were annotated for ontologies using DAVID (<xref ref-type="bibr" rid="B52">Huang da et al., 2009</xref>) in conjunction with the GOplot v.1.0.2&#xa0;R package.</p>
</sec>
</sec>
<sec id="s2-5">
<title>2.5 Electrophysiology analysis</title>
<p>hiPSC-CMs were seeded in a droplet (10,000 cells/droplet), covering all electrodes of fibronectin (1:20) coated Axion CytoView 96 well plates. Cultures were maintained at 37&#xb0;C, 5% CO<sub>2</sub>, with all plates equilibrated for 30&#xa0;min prior to recordings. Electrophysiological parameters were obtained from field potential recordings of contracting hiPSC-CMs using an Axion Maestro Pro device and the corresponding Axis Navigator and Cardiac Analysis tool. Plates were recorded for 5&#xa0;min. Parameters analyzed included; active electrodes (number of electrodes detecting beats in percentage with beat detection set at 300&#xa0;&#xb5;V), beat rate (beats per minute; BPM), beat rate irregularity (coefficient of variation within each well between the eight electrodes, BRI), beat rate variability (coefficient of variation in between wells of the same plate; BRV CV), field potential duration (ms; FPD), corrected field potential duration (FPDc), FPD detection success rate (percentage of active electrodes which could also detect FPD successfully), FPD variability (coefficient of variation in between wells of the same plate; FPD CV). Calculations were performed following the equations listed:<disp-formula id="equ2">
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</sec>
<sec id="s2-6">
<title>2.6 Data processing and visualization</title>
<p>Prism GraphPad software was used for additional data processing. Error bars on graphs represent the SEM indicating the precision of the estimated population mean, or SD indicating the data variability around the mean.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>3 Results</title>
<sec id="s3-1">
<title>3.1 Serum-free medium enhances hiPSC-CM metabolic function and electrophysiological stability</title>
<p>To ensure predictable compound action, high reproducibility, and more physiologically relevant function for hiPSC-CMs, such as a more mature metabolic phenotype (<xref ref-type="bibr" rid="B39">Feyen et al., 2020</xref>), several chemically defined, serum-free hiPSC-CM culture medium compositions were tested as alternatives to standard serum-containing medium (<xref ref-type="sec" rid="s12">Supplementary Table S2</xref>).</p>
<p>The effects of media formulations on cellular electrophysiology were one of the parameters used to assess their suitability. Synchronized electrical activity of cardiomyocytes is essential for producing effective contractions and physiological function in the heart. Thus, propagation patterns of electrical impulses in spontaneously contracting monolayers of Ncardia&#x2019;s proprietary bioreactor-derived ventricular-like hiPSC-CMs (Ncyte<sup>&#xae;</sup> vCardiomyocytes, Ncyte CM1) were monitored from the first day of consistent spontaneous activity, i.e., day 4 until day 14, in all media using MEA (<xref ref-type="sec" rid="s12">Supplementary Figure S2A</xref>).</p>
<p>Conditions in which higher rate of decreased electrical activity of hiPSC-CMs (i.e., active electrodes &#x3c;50%) and arrhythmic contractions&#x2013;asynchronous contractions between the eight electrodes within each well (i.e., beat-rate irregularity (BRI) &#x3e;5%) were excluded (<xref ref-type="sec" rid="s12">Supplementary Figure S2B</xref>). The combination of bovine serum albumin (BSA) and Knock-out Serum Replacement (KOSR) enabled stability (<xref ref-type="fig" rid="F2">Figure 2A&#x2013;D</xref>; <xref ref-type="sec" rid="s12">Supplementary Figure S2B</xref>; time period from day 4 to 14) and metabolic function (<xref ref-type="fig" rid="F2">Figures 2E&#x2013;H</xref>) comparable to the serum-containing control medium. As expected, several electrophysiological parameters changed over time across the tested media conditions. In the serum-containing control medium, the percentage of active electrodes began to decline after day 8 (<xref ref-type="sec" rid="s12">Supplementary Figure S2B</xref>), accompanied by increased variability in beat rate (BRV CV) in-between individual wells cultured in the same medium and a downward trend in beats per minute (BPM) (<xref ref-type="fig" rid="F2">Figures 2A,B</xref>). The BSA &#x2b; KOSR-supplemented maturation medium showed similar patterns, nevertheless the timing of decline was delayed. Furthermore, the BSA &#x2b; KOSR-supplemented maintenance medium maintained stable values for active electrodes, BPM, and BRV CV up to day 12, indicating the most prolonged electrophysiological stability and enabling a stable assay window until day 14 (<xref ref-type="fig" rid="F2">Figures 2A&#x2013;D</xref>). This data supported the selection of day 8 as the most stable timepoint for further assays (<xref ref-type="sec" rid="s12">Supplementary Figure S2A</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Evaluation of two serum-free media formulations supplemented with 0.5% BSA &#x2b;1% KOSR. <bold>(A&#x2013;D)</bold> Electrophysiological parameters of hiPSC-CMs measured in media that passed the initial screening; <bold>(A)</bold> beats per minute (BMP; threshold 20&#x2013;45), <bold>(B)</bold> beat rate variation (BRV, inter-well variability coefficient of variation, threshold &#x2264;20%), <bold>(C)</bold> field potential duration (FPD) detection success rate (threshold &#x2265;50%) and <bold>(D)</bold> FPD variation (inter-well variability coefficient of variation, threshold &#x2264;20%). <bold>(E,F)</bold> Metabolic activity assessed at days 8 and 14 post-seeding <italic>via</italic> <bold>(E)</bold> oxygen consumption rate (OCR) and <bold>(F)</bold> extracellular acidification rate (ECAR), both normalized to DAPI stained nuclei (&#xb5;s/h/cell). One-Way ANOVA between control <italic>versus</italic> serum-free media per time point, p &#x3c; 0.05 shown. <bold>(G,H)</bold> Assessment of mitochondrial network using MitoTracker staining on day 8. <bold>(G)</bold> Fluorescence signal intensity (absolute values), <bold>(H)</bold> area of the total cell cytoplasm covered by mitochondrial signal. <bold>(I&#x2013;K)</bold> Cardiac troponin T positive cells (%) <bold>(I)</bold> on day 8 <bold>(J)</bold> on day 14. <bold>(K)</bold> Representative fluorescence images of high-purity (right panel) and low-purity (left panel) cultures stained for nuclei (blue) and cTNT (green). Segmentation mask showing cTNT-positive cytoplasm (green) and cTNT-negative nuclei (white). Scale bar &#x3d; 100&#xa0;&#xb5;m. Data represented as mean &#xb1; SEM, N &#x2265; 3 (biological repeats from Ncyte CM1), with n &#x2265; 10 (technical replicates) for all timepoints, except for mitochondrial immunofluorescence measurements N &#x3d; 1, n &#x3d; 8.</p>
</caption>
<graphic xlink:href="ftox-07-1644119-g002.tif">
<alt-text content-type="machine-generated">Bar charts (A-J) and fluorescence images (K) assess cardiac cell parameters across different media (serum-containing, serum-free maturation, serum-free maintenance). Charts measure metrics like beats per minute, fluorescence intensity, and mitochondrial coverage over two time points, day 8 and day 14. Significant differences are indicated in some charts. Fluorescence images (K) display mitochondrial and troponin markers with corresponding segmentations.</alt-text>
</graphic>
</fig>
<p>Cardiomyocytes sustain their electrical activity and physiological functions through an abundant network of mitochondria, which require a continuous supply of respiratory substrates to meet their high energy demands (<xref ref-type="bibr" rid="B66">Li et al., 2020</xref>; <xref ref-type="bibr" rid="B114">Yang et al., 2023</xref>). Disruption in the ATP-generating pathways or alterations in the mitochondrial network significantly impacts cardiac functionality (<xref ref-type="bibr" rid="B16">Brown et al., 2017</xref>). These characteristics can also serve as critical markers for the maturity of hiPSC-CMs. To select which candidate culture condition could facilitate an adult-like metabolic state, metabolic shift from glycolysis to fatty acid oxidation&#x2013;a hallmark of adult cardiomyocytes (<xref ref-type="bibr" rid="B2">Ahmed et al., 2020</xref>) &#x2013; was monitored. Extracellular acidification rate (ECAR), i.e., cellular glycolysis, decreased over time in all media (<xref ref-type="fig" rid="F2">Figure 2F</xref>), suggesting that prolonged cell culture promotes maturation towards an adult like state. Supplemented serum-free maturation medium showed comparable oxygen consumption rate, as measured by oxidative phosphorylation rate (OCR), to serum-containing medium on day 8 (<xref ref-type="fig" rid="F2">Figure 2E</xref>). However, by day 14, the OCR decreased significantly (p &#x3c; 0.001). hiPSC-CMs cultured in supplemented serum-free maintenance medium displayed the lowest OCR at all time points (3.5 &#xd7; 10<sup>&#x2212;5</sup> &#xb1; 3.9<sup>&#x2013;6</sup> and 3.4 &#xd7; 10<sup>&#x2212;5</sup> &#xb1; 8.1<sup>&#x2013;6</sup>). As the OCR remained at similar levels with the serum containing media up to day 8, this was chosen as endpoint. Quantitative morphological assessment of mitochondria was consistent with OCR results, showing higher mitochondrial signal intensity (1,674 &#xb1; 28.87 vs. 1,134 &#xb1; 125.6 RFU) and area coverage (17.93% &#xb1; 0.34% vs. 10.07% &#xb1; 2.06) in maturation medium (<xref ref-type="fig" rid="F2">Figures 2G,H</xref>)<italic>.</italic>
</p>
<p>Cardiac-specific marker troponin T (cTNT) immunostaining at all time points reached cTNT positivity &#x2265;95% (<xref ref-type="fig" rid="F2">Figures 2I&#x2013;K</xref>), indicating that serum-free media did not prompt preferential growth of non-cardiomyocyte cells.</p>
<p>Maturation promoting medium supplemented with 0.5% total BSA plus 1% total KOSR was selected for further experiments, due to its beneficial effects on metabolism.</p>
</sec>
<sec id="s3-2">
<title>3.2 Morphological profiling detects cardiotoxicity and provides mechanistic insight to side effects</title>
<p>Subsequently, to enable scalable morphological profiling of compound-induced cardiotoxicity, high-content imaging (HCI) protocols were optimized for detecting structural changes in subcellular organelles. In comparison with the traditional cell painting assay (<xref ref-type="bibr" rid="B15">Bray et al., 2016</xref>; <xref ref-type="bibr" rid="B79">Pahl and Sievers, 2019</xref>; <xref ref-type="bibr" rid="B26">Cimini et al., 2023</xref>) the panel of fluorescent dyes and antibodies was expanded (<xref ref-type="sec" rid="s12">Supplementary Table S1</xref>). Staining protocols targeting DNA damage (&#x3b3;H2AX), sarcomere (cTNT), gap junctions (connexin 43, CX43), nucleoli, mitochondria, lysosomes, peroxisomes, the Golgi apparatus and endoplasmic reticulum (ER) were validated in a multiplexed 384-well format, forming the basis of our custom organelle-profiling assay.</p>
<p>Protocol optimization involved comparing single <italic>versus</italic> multiplexed staining strategies using well-characterized positive control compounds for each organelle (<xref ref-type="sec" rid="s12">Supplementary Figure S3</xref>). For instance, since doxorubicin is associated with DNA damage, as well as gap junction and nucleoli defects, corresponding staining protocols were tested. Initial nucleolar visualization employed SYTO14, a nucleic acid dye with a broad excitation/emission spectrum. However, due to significant channel bleed-through in multiplexed conditions, doxorubicin-induced nucleolar alterations were only detectable in single-stain formats. Consequently, SYTO14 was excluded from the final protocol and replaced by a fibrillarin antibody as a more specific nucleolar marker to ensure reliable detection in multiplexed imaging. Further organelle-specific responses were confirmed by known mitochondrial toxicants e.g., rotenone (<xref ref-type="bibr" rid="B109">Won et al., 2015</xref>) and chloroquine (<xref ref-type="bibr" rid="B55">Javaid et al., 2022</xref>). Rotenone reduced mitochondrial area and number, similarly to chloroquine, which also increased fluorescence intensity of the mitochondrial signal. Further chloroquine is also a lysosomotropic agent that increases pH by accumulating within these organelles as a deprotonated weak base and blocking the binding of autophagosomes to lysosomes (<xref ref-type="bibr" rid="B49">Homewood et al., 1972</xref>; <xref ref-type="bibr" rid="B56">Jia et al., 2018</xref>), which in this study led to increased lysosomal area and decreased lysosomal fluorescence intensity. Thapsigargin and brefeldin A, elevated ER and Golgi marker signals respectively, while H<sub>2</sub>O<sub>2</sub>, at all tested concentrations (10, 100&#xa0;&#xb5;M), induced a mild reduction in peroxisomal signal. Overall, except for SYTO14, compound-induced changes were comparable across single and multiplexed protocols, validating the robustness of the latter for scalable, phenotypic profiling in hiPSC-CMs. This multiplexed protocol was used in all subsequent compound screening assays studying the effects of a curated library of compounds (<xref ref-type="fig" rid="F3">Figure 3A</xref>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Assessment of compound-induced effects on cell viability in hiPSC-CMs. <bold>(A)</bold> Schematic outline of the experimental design. <bold>(B&#x2013;D)</bold> Percentage change in cell viability following 24-h compound treatment, relative to DMSO vehicle control. Cell viability was estimated based on the number of DAPI-stained nuclei per well (nine fields per well). Data are presented as mean &#xb1; SEM; N &#x3d; 4 (biological replicates from different hiPSC-CM lines), with n &#x3d; 6 (technical replicates per condition). Statistical significance was assessed using Kruskal&#x2013;Wallis test comparing each compound to vehicle; only significant p-values are displayed (&#x2a;p &#x3c; 0.05, &#x2a;&#x2a; p &#x3c; 0.01, &#x2a;&#x2a;&#x2a; p &#x3c; 0.001, &#x2a;&#x2a;&#x2a;&#x2a; p &#x3c; 0.0001).</p>
</caption>
<graphic xlink:href="ftox-07-1644119-g003.tif">
<alt-text content-type="machine-generated">Multi-panel figure labeled from A to D. A depicts a timeline for cell culture experiments, including preculture, seeding, media switch, compound treatment, and endpoint assays with methods like image analysis, electrophysiology, and gene expression. B shows graphs of highly toxic compounds (Doxorubicin, MTX, Cisplatin, 5-FU) impacting nuclei numbers relative to concentration. C depicts intermediate effect compounds (Dofetilide, Amiodarone, Propofol, Digoxin) on nuclei numbers. D illustrates non-toxic compounds (Aspirin, Erlotinib, Empagliflozin) with negligible effect on nuclei numbers.</alt-text>
</graphic>
</fig>
<p>Seventeen reference compounds were selected from three categories: i) seven highly toxic chemotherapeutic agents from different drug classes ii) seven intermediate/unknown-; antiarrhythmics, anesthetics, antipsychotics, and a cardiac myosin activator iii) three non-toxic compounds; one tyrosine kinase inhibitor (TKI), one platelet aggregation inhibitor and one anti-diabetic agent. This selection was made to capture a broad spectrum of mechanisms, from well-known cardiotoxic effects to less understood or non-toxic profiles. Each compound was tested across a 7-point semi-logarithmic concentration range designed to span the reported clinical maximum total plasma concentration (Cmax) values, when feasible, and to balance clinical relevance with detection of perturbations across a range of exposure levels (<xref ref-type="table" rid="T1">Table 1</xref>). To counter line-to-line variability, studies were performed in three different hiPSC-CM lines generated using 2D monolayer (NC196) or 3D bioreactor (2 batches of Ncyte CM, NCRM5) differentiation protocols (<xref ref-type="sec" rid="s12">Supplementary Table S3</xref>). All hiPSC-CMs showed high expression of standard cardiomyocyte markers prior to being treated with the compounds listed above (<xref ref-type="sec" rid="s12">Supplementary Figure S4</xref>).</p>
<p>Experiments confirmed that compounds listed as non-toxic, showed no changes in viability between treated samples and concentration-matched DMSO controls. In contrast, across all hiPSC-CMs, significant reduction in nuclear count was observed for doxorubicin and amiodarone. Specifically, doxorubicin reduced the nuclei count by 67% &#xb1; 13 at 10&#xa0;&#xb5;M (<xref ref-type="fig" rid="F3">Figure 3B</xref>), whereas the same concentration of amiodarone led to a maximal reduction of 31% &#xb1; 5 (<xref ref-type="fig" rid="F3">Figure 3C</xref>). Nuclei count served to assess cardiomyocyte numbers. A secondary assay to verify changes to viability was conducted <italic>via</italic> measuring DNA content (<xref ref-type="sec" rid="s12">Supplementary Figure S5</xref>). It should be noted that actual number of hiPSC-CMs and DNA content could slightly differ by the ratio of multi-nucleated cells which is typically in the range of 8%&#x2013;20% (<xref ref-type="bibr" rid="B32">da Rocha et al., 2017</xref>; <xref ref-type="bibr" rid="B110">Woo et al., 2019</xref>).</p>
<p>In the morphological profiling analysis, doxorubicin induced the most pronounced and widespread changes across organelle-specific readouts. &#x3b3;H2AX, a well-established marker of early cellular response to DNA damage and genotoxic stress (<xref ref-type="bibr" rid="B64">Li et al., 2008</xref>) showed a clear dose-dependent increase in both fluorescence intensity and area&#x2013;detected within the nuclear area of the cells&#x2013;across hiPSC-CM lines. Statistically significant increases in &#x3b3;H2AX intensity were observed at 1&#xa0;&#x3bc;M and 3&#xa0;&#xb5;M (Ncyte CM1: 1.6 &#xb1; 0.05, Ncyte CM2: 1.5 &#xb1; 0.5, NCRM5: 1.4 &#xb1; 0.04, NC196: 1.3 &#xb1; 0.14) while nuclear area was significantly elevated from 0.1 &#xb5;M to 1&#xa0;&#xb5;M (Ncyte CM1: 13.4 &#xb1; 1.7, Ncyte CM2: 12.1.6 &#xb1; 5.2, NCRM5: 8.5 &#xb1; 2.1, NC196: 7.9 &#xb1; 1.1) (<xref ref-type="fig" rid="F4">Figures 4A,B</xref>). Interestingly, at the highest concentrations, &#x3b3;H2AX signal intensity decreased, likely reflecting progressive cell death rather than diminished DNA damage. This biphasic response is consistent with &#x3b3;H2AX&#x2019;s role as an early stress marker, preceding overt cytotoxicity.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>High-content imaging and transcriptomic profiling of doxorubicin-treated hiPSC-CMs. <bold>(A)</bold> &#x3b3;H2AX staining was used to detect DNA damage following doxorubicin treatment. Fluorescence intensity and area are shown per hiPSC-CM line across a 7-point semi-logarithmic concentration range. <bold>(B)</bold> Representative 40X images of &#x3b3;H2AX (within the nuclei), troponin (cytoplasm), mitochondria and nuclei staining. Scale bar &#x3d; 100&#xa0;&#xb5;m. <bold>(C&#x2013;E)</bold> Representative morphological changes in <bold>(C)</bold> lysosomal intensity, <bold>(D)</bold> nucleoli count, and <bold>(E)</bold> gap junction area following compound treatment. <bold>(F)</bold> Gene Ontology (GO) enrichment analysis of RNA-seq data from hiPSC-CMs treated with 0.1&#xa0;&#xb5;M doxorubicin. Displayed are non-redundant GO terms (biological process, cellular component, molecular function) with at least three differentially expressed genes and genes involved in two or more categories, along with corresponding logFC2 (effect size) values for included genes are shown. Data are presented as mean fold change (&#x394;) relative to vehicle &#xb1;SEM. High-content imaging: N &#x3d; 4 (biological replicates from different hiPSC-CM lines), n &#x2265; 6 (technical replicates per condition). RNA-seq: N &#x3d; 3 (Ncyte CM1). Statistical significance assessed by Kruskal&#x2013;Wallis test; p &#x3c; 0.05 displayed (&#x2a;p &#x3c; 0.05,&#x2a;&#x2a; p &#x3c; 0.01, &#x2a;&#x2a;&#x2a; p &#x3c; 0.001, &#x2a;&#x2a;&#x2a;&#x2a; p &#x3c; 0.0001).</p>
</caption>
<graphic xlink:href="ftox-07-1644119-g004.tif">
<alt-text content-type="machine-generated">Graphs and images depict the effects of different concentrations of doxorubicin on various cell parameters. Panel A shows changes in &#x3b3;H2A.X intensity and signal area. Panel B displays cell images at different concentrations highlighting nuclei, mitochondria, DNA damage, and sarcomere. Panels C, D, and E illustrate lysosomes intensity, nucleoli count, and Cx-43 area changes. Panel F presents a circular visualization of gene ontology terms related to cell processes like cell division and nucleus function. A color-coded key identifies terms in shades from red to green.</alt-text>
</graphic>
</fig>
<p>To further investigate the transcriptional effects underlying the observed DNA damage response, RNA sequencing (RNA-seq) was performed using cells treated with doxorubicin at 0.1&#xa0;&#xb5;M (<xref ref-type="table" rid="T1">Table 1</xref>). At this concentration, selected as having shown phenotypic changes but no cell death that would cloud gene ontology (GO) analysis, a total of 125 genes were differentially expressed compared to vehicle controls, with the majority being downregulated. GO term analysis revealed significant enrichment for pathways related to cell division and nuclear organization, including downregulation of genes involved in mitotic regulation, such as cyclin-dependent kinases (e.g., CDK1) and associated regulators. Notably, FAM111B, a protease implicated in DNA repair and cell survival (<xref ref-type="bibr" rid="B7">Arowolo et al., 2022</xref>) showed the largest effect size among all differentially expressed genes. Importantly, TOP2A, the molecular target of doxorubicin and key component of DNA replication and repair was significantly downregulated (logFC: &#x2212;5.29) (<xref ref-type="fig" rid="F4">Figure 4F</xref>).</p>
<p>Further known toxicities of doxorubicin were detected by imaging, namely; significant increase in lysosomal intensity (p &#x3c; 0.05 at 3&#xa0;&#x3bc;M, 10&#xa0;&#xb5;M) and nucleolar number (p &#x3c; 0.05 at 1&#xa0;&#x3bc;M&#x2013;10&#xa0;&#xb5;M), changes in CX43 area could also be observed, however this effect showed high variability (<xref ref-type="fig" rid="F4">Figures 4C&#x2013;E</xref>). Differences observed in sensitivity across cell lines highlight the importance of including multiple cell lines with individual genetic backgrounds in compound screening.</p>
<p>MEA experiments using Ncyte CM1 cells, showed doxorubicin compromised electrical activity by increasing BPM and BRI, even at sub-clinical concentrations &#x2265;100&#xa0;nM (<xref ref-type="fig" rid="F5">Figure 5A</xref>; <xref ref-type="sec" rid="s12">Supplementary Table S4</xref>). Findings from electrophysiology confirmed the highly cardiotoxic potential of doxorubicin, while imaging analysis additionally highlighted the cellular mechanisms involved.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Compound-induced changes in beat rate irregularity (BRI) across toxicity classes in hiPSC-CMs. <bold>(A&#x2013;C)</bold> Beat rate irregularity (BRI) assessed by multi-electrode array (MEA) field potential recordings after 24-h compound treatment. BRI &#x3e;5% (dotted line) was used as a threshold to indicate arrhythmic activity. <bold>(A)</bold> Compounds classified as highly cardiotoxic. <bold>(B)</bold> Compounds with intermediate or unclear cardiotoxicity profiles. <bold>(C)</bold> Compounds considered non-cardiotoxic. The red dashed line indicates vehicle control values. Compounds highlighted with a red background indicate elevated BRI or electrical quiescence.</p>
</caption>
<graphic xlink:href="ftox-07-1644119-g005.tif">
<alt-text content-type="machine-generated">Nine graphs are shown, organized into three sections: A, B, and C. Section A is labeled &#x22;Highly toxic&#x22; with graphs for Doxorubicin, MTX, Cisplatin, 5-FU, Dasatinib, Ponatinib, and Lapatinib, highlighting dose-dependent toxicity increases. Section B, &#x22;Intermediate effect,&#x22; features graphs for Dofetilide, Amiodarone, Propofol, Digoxin, Chlorpromazine, Bupivacaine, and Omecamtiv Mecarbil, showing moderate irregularity changes. Section C, &#x22;Non-toxic,&#x22; includes ASA, Erlotinib, and Empagliflozin with minimal effects on irregularity. Each graph plots irregularity (CV%) against concentration (&#x03BC;M), with red shading indicating arrhythmia.</alt-text>
</graphic>
</fig>
<p>An interesting compound from the intermediate toxicity group, amiodarone, also displayed a distinct morphological phenotype. At the highest concentration tested, the detachment of hiPSC-CMs in culture rendered the collection of adequate imaging data impossible. Similarly, cellular loss has been shown in multiple cell types (<xref ref-type="bibr" rid="B10">Bargout et al., 2000</xref>; <xref ref-type="bibr" rid="B9">Balasubramanian et al., 2019</xref>). Even in the absence of major hiPSC-CM loss at 1&#xa0;&#x3bc;M, deregulation in genes involved in cellular adhesion and cell-cell adhesion (e.g., <italic>COL14A1&#x2191;</italic>; <italic>KITLG&#x2191;</italic>, <italic>SOX9&#x2193;</italic>, <italic>ACTC1&#x2193;</italic>, <italic>NDRG1&#x2193;</italic>, <italic>KCNJ4 &#x2193;</italic>, <xref ref-type="fig" rid="F6">Figure 6E</xref>) was detected.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>High-content imaging and transcriptomic profiling of amiodarone-treated hiPSC-CMs. <bold>(A,B)</bold> Morphological alterations induced by amiodarone across hiPSC-CM lines, shown as fold change (&#x394;) relative to vehicle control across a 7-point semi-logarithmic concentration range. <bold>(A)</bold> Mitochondrial signal. <bold>(B)</bold> Lysosomal signal. <bold>(C,D)</bold> Representative 40&#xd7; fluorescence images of <bold>(C)</bold> staining for DNA damage (within the nuclei), troponin (cytoplasm), mitochondria and nuclei and <bold>(D)</bold> lysosomes, gap junctions, nucleoli and nuclei after 24-h incubation with 3&#xa0;&#xb5;M amiodarone or DMSO vehicle. Scale bar &#x3d; 100&#xa0;&#xb5;m. <bold>(E)</bold> Gene Ontology (GO) enrichment analysis of RNA-seq data from hiPSC-CMs treated with 1&#xa0;&#xb5;M amiodarone. Displayed are non-redundant GO terms (biological process, cellular component, molecular function) with at least four differentially expressed genes and genes involved in two or more categories, along with corresponding logFC2 (effect size) values for included genes. Data are presented as mean &#xb1; SEM. High-content imaging: N &#x3d; 4 (biological replicates from different hiPSC-CM lines), n &#x2265; 6 (technical replicates per condition). RNA-seq: N &#x3d; 3 (Ncyte CM1). Statistical significance assessed by Kruskal&#x2013;Wallis test; p &#x3c; 0.05 values are shown (&#x2a;p &#x3c; 0.05,&#x2a;&#x2a; p &#x3c; 0.01, &#x2a;&#x2a;&#x2a; p &#x3c; 0.001, &#x2a;&#x2a;&#x2a;&#x2a; p &#x3c; 0.0001).</p>
</caption>
<graphic xlink:href="ftox-07-1644119-g006.tif">
<alt-text content-type="machine-generated">Graphs, images, and a chord diagram depicting cellular and molecular analysis of amiodarone induced toxicity. A Line graphs showing fluorescence intensity and area average of mitochondria at varying concentrations, with distinct cell lines labeled. Some levels are not detectable (ND). B Similar analysis for lysosomes. C Fluorescent microscopy images comparing mitochondrial and DNA damage markers between vehicle and 3 &#xB5;M amiodarone treatment. D Similar microscopy images for lysosomes. E Chord diagram showing gene ontology (GO) terms with color-coded pathways and gene associations, with a legend explaining each term.</alt-text>
</graphic>
</fig>
<p>As a cationic amphiphilic drug, amiodarone promotes the buildup of phospholipids within the endosomal-lysosomal system i.e. phospholipidosis (<xref ref-type="bibr" rid="B17">Buratta et al., 2015</xref>; <xref ref-type="bibr" rid="B75">Niimi et al., 2016</xref>; <xref ref-type="bibr" rid="B86">Sagini et al., 2021</xref>). In accordance with effects observed in primary human cardiomyocytes (<xref ref-type="bibr" rid="B60">Krajcova et al., 2023</xref>), increased mitochondrial fluorescence intensity and detected signal area (up to 1.8 &#xb1; 0.1 times and 1.7 &#xb1; 0.6 times), and lysotoxic effects with decreased fluorescence intensity (up to 0.69 &#xb1; 0.1 times) were observed in our study (<xref ref-type="fig" rid="F6">Figures 6A&#x2013;D</xref>). Additionally, downregulation of genes linked to lysosomal and mitochondrial function, such as <italic>P4HA1,</italic> were detected. Notably, this gene is also associated with the endoplasmic reticulum lumen cellular component, genes of which (<italic>P4HA1</italic>, <italic>SPON1</italic>, <italic>P3H2</italic>, <italic>COL21A1</italic>, <italic>GPX7</italic>, <italic>P4HA2</italic>, <italic>MELTF</italic>, <italic>ERO1A</italic>) were also downregulated (<xref ref-type="fig" rid="F6">Figure 6E</xref>).</p>
<p>In MEA analysis, amiodarone slowed down BR at &#x2265;0.3 &#xb5;M, without causing FPD prolongation (<xref ref-type="sec" rid="s12">Supplementary Table S4</xref>). Cessation of beating was detected at concentrations &#x2265;3&#xa0;&#xb5;M. This aligns with the findings of the CiPA studies (<xref ref-type="bibr" rid="B12">Blinova et al., 2017</xref>; <xref ref-type="bibr" rid="B13">Blinova et al., 2018</xref>; <xref ref-type="bibr" rid="B14">Blinova et al., 2019</xref>). Moreover, treatment also affected processes regulating ion channels (e.g., <italic>KCNJ4&#x2193;</italic>, <italic>HCN1&#x2191;</italic>, <italic>CASQ2&#x2193;</italic>), muscle contraction, and actin filament organization (<xref ref-type="fig" rid="F6">Figure 6E</xref>).</p>
<p>Out of the seventeen compounds tested, ten exhibited effects on any electrophysiology parameters at varying concentrations (<xref ref-type="fig" rid="F5">Figure 5</xref>; <xref ref-type="sec" rid="s12">Supplementary Table S4</xref>). Specifically, seven compounds&#x2014;doxorubicin, amiodarone, lapatinib, bupivacaine, erlotinib, ponatinib, and dofetilide&#x2014;were associated with either arrhythmia and/or quiescence (<xref ref-type="fig" rid="F5">Figure 5</xref>). Digoxin shortened the FPD whereas dofetilide and cisplatin caused prolongation. Interestingly, erlotinib displayed a bell-shaped dose-response curve demonstrating complex interactions between dose and target engagement. Chlorpromazine had a mild effect on FPD; however, this effect size was not dependent on concentration. Six compounds had no effect on electrophysiology, including two non-toxic compounds (empagliflozin, aspirin), methotrexate, 5-fluorouracil, propofol, and omecamtiv mecarbil (<xref ref-type="sec" rid="s12">Supplementary Table S4</xref>).</p>
<p>When examining individual morphological parameters, lysosomes were affected by doxorubicin, amiodarone, ponatinib, erlotinib, and lapatinib. Lapatinib also decreased peroxisomal area (<xref ref-type="sec" rid="s12">Supplementary Figure S6</xref>). DNA damage was observed with doxorubicin only, a compound that also impacted nucleoli and CX43 (<xref ref-type="fig" rid="F4">Figure 4</xref>). Mitochondria were most disturbed by amiodarone (<xref ref-type="fig" rid="F6">Figure 6</xref>). Sarcomere alterations (i.e., sarcomere width) were seen with doxorubicin, amiodarone, bupivacaine and dofetilide (<xref ref-type="sec" rid="s12">Supplementary Figure S6</xref>).</p>
<p>Results confirm that morphological analysis detects diverse mechanisms of potential cardiotoxicity and highlight its advantages as a complementary method for providing a more comprehensive cardiotoxicity assessment.</p>
</sec>
<sec id="s3-3">
<title>3.3 Clustering analysis delineates cardiotoxic drug profiles by effect size and mechanism of action</title>
<p>Morphological profiling generates extensive datasets, in this study comprising of 205 parameters (<xref ref-type="sec" rid="s12">Supplementary Tables S5, S6</xref>), enabling the application of bioinformatic clustering techniques.</p>
<p>To explore broad phenotypic effects of the compounds a PCA-based approach was used. All seven concentrations tested per compound were included and treated as a single group, enabling detection of patterns emerging at any exposure level and circumventing the dose-dependent variability in compound response across hiPSC-CM lines. For each compound, a morphological &#x2018;fingerprint&#x2019; &#x2013; reflecting the pattern of morphological perturbation induced by a compound&#x2014;was generated by analyzing the loading scores of the first principal component (PC1) averaged across cell lines/batches. These scores represent the relative contribution of each morphological feature to the primary axis of variance in the dataset and served as input for clustering analysis, allowing for a normalized data comparison across.</p>
<p>Using this approach, drugs could be divided into 4 clusters (<xref ref-type="fig" rid="F7">Figure 7</xref>). Doxorubicin, as expected, formed its own cluster (cluster 1) characterized by prominent changes to the nuclei and cytoplasm. Interestingly, known non-cardiotoxic compounds (erlotinib, aspirin, and empagliflozin) clustered together with chlorpromazine, an antipsychotic agent and digoxin, a Na/K ATPase inhibitor (cluster 2). A smaller cluster (cluster 3) included ion-channel blockers, amiodarone, dofetilide and bupivacaine. This cluster represents compounds that affect cardiac electrophysiology (<xref ref-type="bibr" rid="B36">Falk and Decara, 2000</xref>; <xref ref-type="bibr" rid="B67">Lim et al., 2006</xref>; <xref ref-type="bibr" rid="B94">Stoetzer et al., 2016</xref>; <xref ref-type="bibr" rid="B103">Vaiciuleviciute et al., 2021</xref>; <xref ref-type="bibr" rid="B96">Tagle-Cornell et al., 2024</xref>). Evidently, bupivacaine, as observed in the clinic (<xref ref-type="bibr" rid="B30">Cotileas et al., 2000</xref>; <xref ref-type="bibr" rid="B77">Osama et al., 2024</xref>), led to decreased beat rate (3, 10&#xa0;&#xb5;M) (<xref ref-type="sec" rid="s12">Supplementary Table S4</xref>) and increased irregularity (10&#xa0;&#xb5;M) (<xref ref-type="fig" rid="F5">Figure 5</xref>). The fourth cluster (cluster 4) was characterized by mixed toxicity on multiple organelles, such as changes in gap junctions. The increase in cytosolic connexin CX43 observed in our study for both ponatinib and doxorubicin is in line with literature reports (<xref ref-type="bibr" rid="B81">Pecoraro et al., 2015</xref>; <xref ref-type="bibr" rid="B82">Pecoraro et al., 2017</xref>; <xref ref-type="bibr" rid="B72">Madonna et al., 2021</xref>) and may relate to heterogeneous post-treatment redistribution (<xref ref-type="bibr" rid="B40">Fontes et al., 2012</xref>). Notably, lapatinib was the only compound that changed peroxisomal parameters (<xref ref-type="fig" rid="F7">Figure 7</xref>; <xref ref-type="sec" rid="s12">Supplementary Figure S6</xref>). Correspondingly, GO term analysis showed deregulation of fatty-acid metabolic processes as well as peroxisomal &#x3b2;-oxidation including genes such as <italic>ACSL1</italic>, <italic>ACSL3</italic>, and <italic>ACOX1</italic> (<xref ref-type="sec" rid="s12">Supplementary Table S7</xref>).</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>Morphological feature-based clustering of compound responses in hiPSC-CMs. Principal component analysis (PCA) was performed for each compound compared to vehicle control to identify key morphological descriptors. The heatmap shows averaged absolute loading scores of the first component (PC1) per parameter across treatments. K-means clustering was applied to the loading profiles to group compounds based on morphological similarity. N &#x3d; 4 (biological replicates from different hiPSC-CM lines), n &#x2265; 6 (technical replicates per condition).</p>
</caption>
<graphic xlink:href="ftox-07-1644119-g007.tif">
<alt-text content-type="machine-generated">Hierarchical clustering heatmap with four clusters of drugs labeled at the bottom. Color gradient from blue to red indicates data values ranging from 0.02 to 0.12.</alt-text>
</graphic>
</fig>
<p>In addition to unsupervised clustering, supervised classification was used to further investigate whether compound-induced phenotypes could be aligned with known clinical cardiotoxicity profiles. To this end, sPLSDA (<xref ref-type="bibr" rid="B83">Perez-Enciso and Tenenhaus, 2003</xref>) was applied to replicate-level data to assess the relationship between morphological and electrophysiological alterations and FDA label-based toxicity classifications (<xref ref-type="sec" rid="s12">Supplementary Table S8</xref>). One concentration per compound was selected for this analysis, following the same rationale as for RNA-seq experiments: the dose that elicited the most pronounced functional effect in MEA recordings without significant loss of viability (<xref ref-type="table" rid="T1">Table 1</xref>).</p>
<p>Lapatinib and doxorubicin, known for their potential effect on left ventricular ejection fraction at least in some patients (<xref ref-type="bibr" rid="B24">Chatterjee et al., 2010</xref>; <xref ref-type="bibr" rid="B50">Hsu et al., 2018</xref>; <xref ref-type="bibr" rid="B106">Waliany et al., 2023</xref>), visibly clustered together when morphological and electrophysiological parameters were combined (<xref ref-type="fig" rid="F8">Figure 8</xref>). However, this similarity was not evident from electrophysiology parameters alone. As a separate example, in the electrophysiology dataset TKIs; erlotinib and ponatinib showed similarity to dofetilide and to amiodarone, respectively. Both are known clinically to be associated with ischemia (<xref ref-type="bibr" rid="B44">Gover-Proaktor et al., 2017</xref>; <xref ref-type="bibr" rid="B46">Haguet et al., 2020</xref>) yet clustered with arrhythmogenic- and non-toxic compounds, respectively, in the imaging dataset. Unlike other compounds in the ischemia group, ponatinib carries an FDA black box warning for arrhythmia risk, (<xref ref-type="bibr" rid="B104">Vassallo and Trohman, 2007</xref>), which could explain its localization alongside the arrhythmia group. From the arrhythmia group, chlorpromazine showed no separation from the non-cardiotoxic compounds in either imaging alone, electrophysiology assays alone, or combined clustering. Similarly, other studies also indicate little effects of chlorpromazine in electrophysiology (<xref ref-type="bibr" rid="B12">Blinova et al., 2017</xref>; <xref ref-type="bibr" rid="B13">Blinova et al., 2018</xref>; <xref ref-type="bibr" rid="B14">Blinova et al., 2019</xref>; <xref ref-type="bibr" rid="B115">Yu et al., 2019</xref>). In summary, the addition of functional data to morphology, increased the separation of the clusters formed based on clinical information resulting in 76% of compounds clustered according to their known clinical toxicity (<xref ref-type="fig" rid="F8">Figure 8C</xref>). Misclassified compounds were primarily from the ischemia group. Clustering based on imaging-derived morphological features alone (<xref ref-type="fig" rid="F8">Figure 8B</xref>) produced compound groupings that closely matched those observed in the combined dataset. This convergence suggests that high-content imaging captures phenotypic signatures that are strongly aligned with clinical toxicity classifications, and in some cases may be sufficient for compound-level discrimination without additional functional data. The similarity between these panels underscores the value of imaging as a robust and scalable standalone modality for cardiotoxicity screening, particularly in settings lacking access to electrophysiological platforms. However, for certain compounds with specific functional effects (e.g., ion-channel blockers), electrophysiology provides unique complementary insight (<xref ref-type="fig" rid="F8">Figure 8A</xref>).</p>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption>
<p>Supervised clustering based on clinical side effects. <bold>(A&#x2013;C)</bold> Partial least squares discriminant analysis (sPLS-DA) was used to visualize compound clustering based on different datasets: <bold>(A)</bold> electrophysiological features, <bold>(B)</bold> imaging-derived morphological features, <bold>(C)</bold> combined dataset weighted by data type. <bold>(D)</bold> Compound toxicity groups were defined according to FDA label warnings. Each data point represents the vehicle-normalized median feature value for a compound at one selected concentration per assay. Data is shown for Ncyte CM1 only.</p>
</caption>
<graphic xlink:href="ftox-07-1644119-g008.tif">
<alt-text content-type="machine-generated">A series of plots depicting results of sPLS-DA and a table of included compound grouping. Panel A shows a scatter plot labeled &#x201c;Electrophysiology dataset&#x201d; with multiple compounds plotted based on Xvariate 1 and X-variate 2, with notable clusters. Panel B presents the "Imaging dataset" with similar plotting parameters and visible clustering. Panel C combines both datasets in a X variate 1 versus X-variate 2 plot. Panel D is a table listing compounds with their concentrations and FDA label warnings, highlighting details on cardiotoxicity like arrhythmia and ischemia.</alt-text>
</graphic>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>4 Discussion</title>
<p>Utilizing hiPSC-CMs treated with a panel of reference compounds, our approach integrates traditional electrophysiology with morphological profiling to establish a more comprehensive and innovative <italic>in vitro</italic> assessment of cardiac safety. Our findings demonstrate that while drug classification is possible using functional readouts alone, combining it with morphological assays in a multiplexed approach provides a more robust framework for cardiac-safety assessment. Imaging not only complements electrophysiology but may have the potential to replace it in certain contexts, as it offers mechanistic insights unattainable <italic>via</italic> electrophysiology alone and is a technology suitable for labs lacking dedicated expertise and equipment for electrophysiology assays.</p>
<p>Assessing cardiac safety <italic>in vitro</italic> remains a challenge. Early approaches focused on the electrophysiological characteristics of hiPSC-CMs; linking corrected FPD and presence of arrhythmia <italic>in vitro</italic> to native ECG endpoints (<xref ref-type="bibr" rid="B112">Yamamoto et al., 2016</xref>) or calculating relative TdP scores, (<xref ref-type="bibr" rid="B4">Ando et al., 2017</xref>), suggesting that hiPSC-CMs are reliable models for assessing clinical proarrhythmic risk. As the field advances, in parallel to animal testing being phased out (<xref ref-type="bibr" rid="B116">Zushin et al., 2023</xref>), hiPSC-CMs are expected to play an increasingly important role in the evolving regulatory frameworks such as the new ICH guideline on QT/QTc evaluation (E14/S7B Q&#x26;A, adopted 2022), which explicitly acknowledge hiPSC-CM assays as a new nonclinical tool.</p>
<p>Beyond electrophysiology, tolerance interval calculations <italic>via</italic> weighted scoring matrices derived from multiple readouts (e.g., impedance, MEA, and calcium transients) enabled the consolidation of different drug effects into one hazard label (<xref ref-type="bibr" rid="B59">Kopljar et al., 2018</xref>). Genetic variability between individuals has been accounted for by comparing healthy and diseased hiPSC-CMs, which in combination with multiple parameters, led to the development of a &#x201c;cardiac safety index&#x201d; (<xref ref-type="bibr" rid="B91">Sharma et al., 2017</xref>).</p>
<p>In the present study, to circumvent bias introduced by polymorphisms or line-to-line variability, we included multiple hiPSC-CM lines from different genetic backgrounds. Moreover, hiPSC-CMs were generated <italic>via</italic> both 2D and 3D differentiation methods. Traditional electrophysiology readouts were combined with morphological analysis to integrate diverse aspects of cardiotoxicity into the analysis.</p>
<p>A novel approach to assessing compound-induced toxicity involves image-based morphological analysis that captures rich subcellular information as a set of features describing drug responses (<xref ref-type="bibr" rid="B53">Hughes et al., 2020</xref>; <xref ref-type="bibr" rid="B76">Nyffeler et al., 2020</xref>; <xref ref-type="bibr" rid="B108">Way et al., 2021</xref>). The JUMP- (<xref ref-type="bibr" rid="B26">Cimini et al., 2023</xref>) and Oasis Cell Painting Consortium are recent initiatives for enhancing morphological screening by standardizing the traditional Cell Painting assay (<xref ref-type="bibr" rid="B15">Bray et al., 2016</xref>; <xref ref-type="bibr" rid="B79">Pahl and Sievers, 2019</xref>). However, at the moment, they are limited in terms of concentration range and cellular models utilized (<xref ref-type="bibr" rid="B23">Chandrasekaran et al., 2024</xref>).</p>
<p>In contrast, our study extends these efforts by applying morphological profiling to hiPSC-CMs across a broader, clinically relevant concentration range. The panel of subcellular markers was also expanded compared to traditional Cell Painting to capture a more extensive set of organelle-specific responses. Morphological profiling not only identified potential cardiotoxicity, but also enabled a mechanistic grouping of compounds. Together with MEA, these two modalities provide both a global, dose-inclusive view of morphological response (PCA) and a more detailed classification of compound effects (sPLS-DA) linked to clinically observed toxicities, revealing distinct aspects of drug-induced cardiotoxic effects and highlighting the need for more holistic approaches in pharmaceutical screening.</p>
<p>Assessing doxorubicin&#x2019;s toxicity profile served as proof of concept for further analysis. Clinical cardiotoxic side-effects of doxorubicin range from mild paroxysmal non-sustained arrhythmias to complex, irreversible and fatal structural alterations of the myocardium, the risk of which tends to increase in a dose-dependent manner (<xref ref-type="bibr" rid="B24">Chatterjee et al., 2010</xref>). Preclinical studies have confirmed that doxorubicin enacts its cytotoxic role through reactive oxygen species formation, damage to the DNA, and alterations of calcium and mitochondrial homeostasis (<xref ref-type="bibr" rid="B80">Parra et al., 2008</xref>; <xref ref-type="bibr" rid="B21">Carvalho et al., 2014</xref>; <xref ref-type="bibr" rid="B1">Adamcova et al., 2019</xref>; <xref ref-type="bibr" rid="B78">Osataphan et al., 2020</xref>; <xref ref-type="bibr" rid="B111">Wu et al., 2022</xref>). Doxorubicin acts primarily <italic>via</italic> inhibition of topoisomerase II&#x3b1; causing DSBs (<xref ref-type="bibr" rid="B99">Tewey et al., 1984</xref>). As adult cardiomyocytes tend to lack the II&#x3b1; isoform, (<xref ref-type="bibr" rid="B101">Turley et al., 1997</xref>), whereas it is relatively prevalent in hiPSC-CMs (<xref ref-type="bibr" rid="B31">Cui et al., 2019</xref>), hiPSC-CMs might be more suitable for detecting doxorubicin toxicity. Morphological analysis repeatedly confirmed doxorubicin&#x2019;s effect on inducing DSBs, however, contrary to literature, mitochondrial damage (<xref ref-type="bibr" rid="B78">Osataphan et al., 2020</xref>; <xref ref-type="bibr" rid="B111">Wu et al., 2022</xref>) and fragmentation (<xref ref-type="bibr" rid="B80">Parra et al., 2008</xref>) could not be observed in this study. Sensitivity to doxorubicin varies per hiPSC line and heavily depends on incubation time (<xref ref-type="bibr" rid="B69">Louisse et al., 2017</xref>; <xref ref-type="bibr" rid="B1">Adamcova et al., 2019</xref>). Longer incubation times, repeated dosing, or use of alternative mitochondrial dyes could enable the detection of these changes. Yet, RNA-seq data pointed towards an effect on mitochondria as genes such as <italic>NDUFB3</italic> (part of complex I), <italic>CYCS</italic> (key player in the electron transport chain and apoptosis), and <italic>SLC25A5</italic> were upregulated, similar to differential expression patterns found in literature (<xref ref-type="bibr" rid="B48">Holmgren et al., 2018</xref>). Interestingly, doxorubicin significantly increased the LysoTracker signal. We hypothesize that this effect could be explained by the presence of non-degraded autolysosomes. Doxorubicin&#x2019;s role in autophagy has been debated; nonetheless, there is evidence pointing towards blocking autophagic flux in animal- and cell-models in a process which is associated with a significant buildup of non-degraded autolysosomes (<xref ref-type="bibr" rid="B65">Li et al., 2016</xref>).</p>
<p>Another compound that exemplifies the advantages of a multiparametric approach is amiodarone, a potent antiarrhythmic, considered to be one of the most effective for treatment of ventricular arrhythmia and atrial fibrillation (<xref ref-type="bibr" rid="B104">Vassallo and Trohman, 2007</xref>). Amiodarone reduced BPM at concentrations below 0.3&#xa0;&#xb5;M without FPD prolongation during acute treatment, despite the QT warning present on its FDA label (<xref ref-type="bibr" rid="B67">Lim et al., 2006</xref>). Lack of sensitivity to the compound&#x2013;which was also evident in other studies (<xref ref-type="bibr" rid="B12">Blinova et al., 2017</xref>) &#x2013; could potentially be attributed to alterations in relative expression of individual ion channels compared to adult cardiomyocytes (<xref ref-type="bibr" rid="B89">Schmid et al., 2021</xref>).</p>
<p>A contrasting example is erlotinib, a TKI rarely associated with cardiac side-effects (<xref ref-type="bibr" rid="B87">Sayegh et al., 2023</xref>). In this study erlotinib induced detectable electrophysiological changes in MEA assays; however, morphological profiling alone and in combination with electrophysiology it clustered with non-toxic compounds. Since MEA measurements were conducted only in the Ncyte CM line, one possible explanation is individual donor-specific genetic variation influencing drug response. Notably, although rare, clinical reports do document cases of QT prolongation associated with erlotinib treatment (<xref ref-type="bibr" rid="B58">Kloth et al., 2015</xref>). These findings suggest that in some instances, electrophysiological assays may detect functional liabilities that are not yet evident on the morphological level.</p>
<p>A broader comparison across tyrosine kinase inhibitors (TKIs) further illustrates the assay-specific nature of detection. Other TKIs in this study&#x2014;lapatinib, dasatinib, and ponatinib&#x2014;showed divergent profiles. Lapatinib and ponatinib both affected morphological and electrophysiological parameters and clustered separately from low-risk compounds. This is consistent with their known clinical cardiotoxicity, including reports of QT prolongation and, in the case of ponatinib, an FDA black box warning for severe cardiovascular events (<xref ref-type="bibr" rid="B104">Vassallo and Trohman, 2007</xref>; <xref ref-type="bibr" rid="B28">Coppola et al., 2018</xref>; <xref ref-type="bibr" rid="B5">Ando et al., 2020</xref>). In contrast, dasatinib did not significantly affect MEA parameters, despite clinical reports of cardiotoxicity. This divergence highlights how compound-specific mechanisms and assay limitations can influence the detectability of adverse effects.</p>
<p>Extending the scope to the complete compound library, we were able to show that the <italic>in-vitro</italic> imaging data derived from 205 cellular parameters correlate well with clinically-observed side effects (<xref ref-type="fig" rid="F8">Figure 8</xref>). FDA labels were systematically reviewed and categorized into major cardiovascular risk groups: arrhythmia, ischemia, structural abnormalities (e.g., reduced ejection fraction or cardiomyopathy), and none. Clustering based on imaging alone captured these groupings to a large extent, and inclusion of electrophysiology data further improved separation. One exception was the ischemia group, which did not resolve into a distinct cluster. This may reflect the fact that ischemic cardiotoxicity often involves endothelial dysfunction in addition to direct cardiomyocyte effects (<xref ref-type="bibr" rid="B93">Soultati et al., 2012</xref>; <xref ref-type="bibr" rid="B84">Polk et al., 2014</xref>; <xref ref-type="bibr" rid="B44">Gover-Proaktor et al., 2017</xref>; <xref ref-type="bibr" rid="B46">Haguet et al., 2020</xref>) a mechanism not captured by our hiPSC-CM model.</p>
<p>Despite the promising outcomes, several limitations must be acknowledged. One primary constraint is the relative immaturity of hiPSC-CMs, which may not fully recapitulate physiological responses of native cardiomyocytes. Lack of co-culture systems to mimic the complex interactions between different cell types and accounting for systemic effects of compounds is another significant limitation. Translatability across larger populations may be hindered by the relatively small number of hiPSC lines included. The range of concentrations per compound tested limited the size of the compound library which may have constrained the power of clustering drug mechanisms. Finally, specificity issues related to dyes and the high costs of antibodies used in the study also present challenges.</p>
<p>Nonetheless, our combinatorial protocol is valuable for developing more predictive <italic>in vitro</italic> cardiotoxicity assessment models. Therefore, we propose integrating morphological readouts into future cardiac safety-indices as we have shown that certain types of compound induced changes may be overlooked by traditional safety assays.</p>
<p>High-content imaging, in combination with morphological profiling is a powerful tool to assess compound effects <italic>in vitro</italic>. Staining protocols were optimized for morphological profiling of organelles and used to screen a diverse library of compounds. Organelle profiling revealed concentration- and compound-dependent effects that traditional readouts only, such as electrophysiology, might not detect. This highlights the added value of combined multi-assay analytics. In addition, many of the parameters specific to each compound were corroborated by alterations in gene-expression levels, supporting that multi-assay analysis can elucidate mechanistic insights into compound effects.</p>
<p>Ultimately, a parallel can be drawn between clinical profiles of toxicity and <italic>in-vitro</italic> findings in hiPSC-CMs, making the platform appropriate for pre-clinical cardiac safety screening of new compounds, and enabling safer medicines to reach the clinic.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s5">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/geo/">https://www.ncbi.nlm.nih.gov/geo/</ext-link>, GSE289264.</p>
</sec>
<sec sec-type="ethics-statement" id="s6">
<title>Ethics statement</title>
<p>The studies involving humans were approved by METC azM/UM at Maastricht University (Netherlands), no additional ethical approval was obtained for commercially available cell lines. The studies were conducted in accordance with the local legislation and institutional requirements. The participants provided their written informed consent to participate in this study.</p>
</sec>
<sec sec-type="author-contributions" id="s7">
<title>Author contributions</title>
<p>BS: Writing &#x2013; original draft, Formal Analysis, Software, Data curation, Conceptualization, Investigation, Methodology, Writing &#x2013; review and editing, Visualization. JS: Methodology, Writing &#x2013; review and editing, Data curation, Writing &#x2013; original draft, Software, Visualization. AS: Writing &#x2013; review and editing, Writing &#x2013; original draft, Investigation. TH: Writing &#x2013; review and editing, Writing &#x2013; original draft, Investigation. FV: Writing &#x2013; original draft, Formal Analysis, Writing &#x2013; review and editing, Data curation, Software, Resources. TM: Methodology, Software, Formal Analysis, Writing &#x2013; original draft, Writing &#x2013; review and editing, Data curation, Investigation. GK: Supervision, Writing &#x2013; review and editing, Writing &#x2013; original draft, Methodology, Conceptualization. PV: Funding acquisition, Supervision, Conceptualization, Writing &#x2013; review and editing, Project administration, Resources, Writing &#x2013; original draft. EM: Writing &#x2013; original draft, Funding acquisition, Resources, Conceptualization, Project administration, Supervision, Methodology, Writing &#x2013; review and editing.</p>
</sec>
<sec sec-type="funding-information" id="s8">
<title>Funding</title>
<p>The author(s) declare that financial support was received for the research and/or publication of this article. This project has received funding from the European Union&#x2019;s Horizon 2020 research and innovation program under grant agreement No 858070.</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of interest</title>
<p>Authors BS, JS, TH, GK, and EM was employed by Ncardia Services B.V.</p>
<p>The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="ai-statement" id="s10">
<title>Generative AI statement</title>
<p>The author(s) declare that Generative AI was used in the creation of this manuscript. The authors used ChatGPT (OpenAI) to assist with troubleshooting coding in R studio for bioinformatic analysis and for occasional language refinement during manuscript preparation. All scientific content, data interpretation, and conclusions were conceived, executed, and validated solely by the authors.</p>
</sec>
<sec sec-type="disclaimer" id="s11">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="supplementary-material" id="s12">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/ftox.2025.1644119/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/ftox.2025.1644119/full&#x23;supplementary-material</ext-link>
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<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Adamcova</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Skarkova</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Seifertova</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Rudolf</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Cardiac troponins are among targets of doxorubicin-induced cardiotoxicity in hiPCS-CMs</article-title>. <source>Int. J. Mol. Sci.</source> <volume>20</volume> (<issue>11</issue>), <fpage>2638</fpage>. <pub-id pub-id-type="doi">10.3390/ijms20112638</pub-id>
</citation>
</ref>
<ref id="B2">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ahmed</surname>
<given-names>R. E.</given-names>
</name>
<name>
<surname>Anzai</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Chanthra</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Uosaki</surname>
<given-names>H.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>A brief review of current maturation methods for human induced pluripotent stem cells-derived cardiomyocytes</article-title>. <source>Front. Cell Dev. Biol.</source> <volume>8</volume>, <fpage>178</fpage>. <pub-id pub-id-type="doi">10.3389/fcell.2020.00178</pub-id>
</citation>
</ref>
<ref id="B3">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Allen</surname>
<given-names>M. J.</given-names>
</name>
<name>
<surname>Nichols</surname>
<given-names>D. J.</given-names>
</name>
<name>
<surname>Oliver</surname>
<given-names>S. D.</given-names>
</name>
</person-group> (<year>2000</year>). <article-title>The pharmacokinetics and pharmacodynamics of oral dofetilide after twice daily and three times daily dosing</article-title>. <source>Br. J. Clin. Pharmacol.</source> <volume>50</volume> (<issue>3</issue>), <fpage>247</fpage>&#x2013;<lpage>253</lpage>. <pub-id pub-id-type="doi">10.1046/j.1365-2125.2000.00243.x</pub-id>
</citation>
</ref>
<ref id="B4">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ando</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Yoshinaga</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Yamamoto</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Asakura</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Uda</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Taniguchi</surname>
<given-names>T.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>A new paradigm for drug-induced torsadogenic risk assessment using human iPS cell-derived cardiomyocytes</article-title>. <source>J. Pharmacol. Toxicol. Methods</source> <volume>84</volume>, <fpage>111</fpage>&#x2013;<lpage>127</lpage>. <pub-id pub-id-type="doi">10.1016/j.vascn.2016.12.003</pub-id>
</citation>
</ref>
<ref id="B5">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ando</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Wada</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Cao</surname>
<given-names>X.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Precise safety pharmacology studies of lapatinib for onco-cardiology assessed using <italic>in vivo</italic> canine models</article-title>. <source>Sci. Rep.</source> <volume>10</volume> (<issue>1</issue>), <fpage>738</fpage>. <pub-id pub-id-type="doi">10.1038/s41598-020-57601-x</pub-id>
</citation>
</ref>
<ref id="B6">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Apati</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Varga</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Berecz</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Erdei</surname>
<given-names>Z.</given-names>
</name>
<name>
<surname>Homolya</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Sarkadi</surname>
<given-names>B.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Application of human pluripotent stem cells and pluripotent stem cell-derived cellular models for assessing drug toxicity</article-title>. <source>Expert Opin. Drug Metab. Toxicol.</source> <volume>15</volume> (<issue>1</issue>), <fpage>61</fpage>&#x2013;<lpage>75</lpage>. <pub-id pub-id-type="doi">10.1080/17425255.2019.1558207</pub-id>
</citation>
</ref>
<ref id="B7">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Arowolo</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Malebana</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Sunda</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Rhoda</surname>
<given-names>C.</given-names>
</name>
</person-group> (<year>2022</year>). <article-title>Proposed cellular function of the human FAM111B protein and dysregulation in fibrosis and cancer</article-title>. <source>Front. Oncol.</source> <volume>12</volume>, <fpage>932167</fpage>. <pub-id pub-id-type="doi">10.3389/fonc.2022.932167</pub-id>
</citation>
</ref>
<ref id="B8">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bailey</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Thew</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Balls</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>An analysis of the use of animal models in predicting human toxicology and drug safety</article-title>. <source>Altern. Lab. Anim.</source> <volume>42</volume> (<issue>3</issue>), <fpage>181</fpage>&#x2013;<lpage>199</lpage>. <pub-id pub-id-type="doi">10.1177/026119291404200306</pub-id>
</citation>
</ref>
<ref id="B9">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Balasubramanian</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Belak</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Verma</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Prysiazhniuk</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Sannajust</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Trepakova</surname>
<given-names>E. S.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Cell culture conditions affect the ability of high content imaging assay to detect drug-induced changes in cellular parameters in human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs)</article-title>. <source>Toxicol. Rep.</source> <volume>6</volume>, <fpage>305</fpage>&#x2013;<lpage>320</lpage>. <pub-id pub-id-type="doi">10.1016/j.toxrep.2019.02.004</pub-id>
</citation>
</ref>
<ref id="B10">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bargout</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Jankov</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Dincer</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Komodromos</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Ibarra-Sunga</surname>
<given-names>O.</given-names>
</name>
<etal/>
</person-group> (<year>2000</year>). <article-title>Amiodarone induces apoptosis of human and rat alveolar epithelial cells <italic>in vitro</italic>
</article-title>. <source>Am. J. Physiol. Lung Cell Mol. Physiol.</source> <volume>278</volume> (<issue>5</issue>), <fpage>L1039</fpage>&#x2013;<lpage>L1044</lpage>. <pub-id pub-id-type="doi">10.1152/ajplung.2000.278.5.L1039</pub-id>
</citation>
</ref>
<ref id="B11">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bleeker</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Vree</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Lagerwerf</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Willems-van Bree</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>Recovery and long-term renal excretion of propofol, its glucuronide, and two di-isopropylquinol glucuronides after propofol infusion during surgery</article-title>. <source>Br. J. Anaesth.</source> <volume>101</volume> (<issue>2</issue>), <fpage>207</fpage>&#x2013;<lpage>212</lpage>. <pub-id pub-id-type="doi">10.1093/bja/aen134</pub-id>
</citation>
</ref>
<ref id="B12">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Blinova</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Stohlman</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Vicente</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Chan</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Johannesen</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Hortigon-Vinagre</surname>
<given-names>M. P.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>Comprehensive translational assessment of human-induced pluripotent stem cell derived cardiomyocytes for evaluating drug-induced arrhythmias</article-title>. <source>Toxicol. Sci.</source> <volume>155</volume> (<issue>1</issue>), <fpage>234</fpage>&#x2013;<lpage>247</lpage>. <pub-id pub-id-type="doi">10.1093/toxsci/kfw200</pub-id>
</citation>
</ref>
<ref id="B13">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Blinova</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Dang</surname>
<given-names>Q.</given-names>
</name>
<name>
<surname>Millard</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Smith</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Pierson</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Guo</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2018</year>). <article-title>International multisite study of human-induced pluripotent stem cell-derived cardiomyocytes for drug proarrhythmic potential assessment</article-title>. <source>Cell Rep.</source> <volume>24</volume> (<issue>13</issue>), <fpage>3582</fpage>&#x2013;<lpage>3592</lpage>. <pub-id pub-id-type="doi">10.1016/j.celrep.2018.08.079</pub-id>
</citation>
</ref>
<ref id="B14">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Blinova</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Schocken</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Patel</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Daluwatte</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Vicente</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Wu</surname>
<given-names>J. C.</given-names>
</name>
<etal/>
</person-group> (<year>2019</year>). <article-title>Clinical trial in a dish: personalized stem cell-derived cardiomyocyte assay compared with clinical trial results for two QT-prolonging drugs</article-title>. <source>Clin. Transl. Sci.</source> <volume>12</volume> (<issue>6</issue>), <fpage>687</fpage>&#x2013;<lpage>697</lpage>. <pub-id pub-id-type="doi">10.1111/cts.12674</pub-id>
</citation>
</ref>
<ref id="B15">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bray</surname>
<given-names>M. A.</given-names>
</name>
<name>
<surname>Singh</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Han</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Davis</surname>
<given-names>C. T.</given-names>
</name>
<name>
<surname>Borgeson</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Hartland</surname>
<given-names>C.</given-names>
</name>
<etal/>
</person-group> (<year>2016</year>). <article-title>Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes</article-title>. <source>Nat. Protoc.</source> <volume>11</volume> (<issue>9</issue>), <fpage>1757</fpage>&#x2013;<lpage>1774</lpage>. <pub-id pub-id-type="doi">10.1038/nprot.2016.105</pub-id>
</citation>
</ref>
<ref id="B16">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Brown</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Perry</surname>
<given-names>J. B.</given-names>
</name>
<name>
<surname>Allen</surname>
<given-names>M. E.</given-names>
</name>
<name>
<surname>Sabbah</surname>
<given-names>H. N.</given-names>
</name>
<name>
<surname>Stauffer</surname>
<given-names>B. L.</given-names>
</name>
<name>
<surname>Shaikh</surname>
<given-names>S. R.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>Expert consensus document: mitochondrial function as a therapeutic target in heart failure</article-title>. <source>Nat. Rev. Cardiol.</source> <volume>14</volume> (<issue>4</issue>), <fpage>238</fpage>&#x2013;<lpage>250</lpage>. <pub-id pub-id-type="doi">10.1038/nrcardio.2016.203</pub-id>
</citation>
</ref>
<ref id="B17">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Buratta</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Urbanelli</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Ferrara</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Sagini</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Goracci</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Emiliani</surname>
<given-names>C.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>A role for the autophagy regulator Transcription Factor EB in amiodarone-induced phospholipidosis</article-title>. <source>Biochem. Pharmacol.</source> <volume>95</volume> (<issue>3</issue>), <fpage>201</fpage>&#x2013;<lpage>209</lpage>. <pub-id pub-id-type="doi">10.1016/j.bcp.2015.03.017</pub-id>
</citation>
</ref>
<ref id="B18">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Burridge</surname>
<given-names>P. W.</given-names>
</name>
<name>
<surname>Matsa</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Shukla</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Lin</surname>
<given-names>Z. C.</given-names>
</name>
<name>
<surname>Churko</surname>
<given-names>J. M.</given-names>
</name>
<name>
<surname>Ebert</surname>
<given-names>A. D.</given-names>
</name>
<etal/>
</person-group> (<year>2014</year>). <article-title>Chemically defined generation of human cardiomyocytes</article-title>. <source>Nat. Methods</source> <volume>11</volume> (<issue>8</issue>), <fpage>855</fpage>&#x2013;<lpage>860</lpage>. <pub-id pub-id-type="doi">10.1038/nmeth.2999</pub-id>
</citation>
</ref>
<ref id="B19">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Burris</surname>
<given-names>H. A.</given-names>
</name>
<name>
<surname>Hurwitz</surname>
<given-names>H. I.</given-names>
</name>
<name>
<surname>Dees</surname>
<given-names>E. C.</given-names>
</name>
<name>
<surname>Dowlati</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Blackwell</surname>
<given-names>K. L.</given-names>
</name>
<name>
<surname>O&#x2019;Neil</surname>
<given-names>B.</given-names>
</name>
<etal/>
</person-group> (<year>2005</year>). <article-title>Phase I safety, pharmacokinetics, and clinical activity study of lapatinib (GW572016), a reversible dual inhibitor of epidermal growth factor receptor tyrosine kinases, in heavily pretreated patients with metastatic carcinomas</article-title>. <source>J. Clin. Oncol.</source> <volume>23</volume> (<issue>23</issue>), <fpage>5305</fpage>&#x2013;<lpage>5313</lpage>. <pub-id pub-id-type="doi">10.1200/jco.2005.16.584</pub-id>
</citation>
</ref>
<ref id="B20">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Capitain</surname>
<given-names>O.</given-names>
</name>
<name>
<surname>Boisdron-Celle</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Poirier</surname>
<given-names>A. L.</given-names>
</name>
<name>
<surname>Abadie-Lacourtoisie</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Morel</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Gamelin</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>The influence of fluorouracil outcome parameters on tolerance and efficacy in patients with advanced colorectal cancer</article-title>. <source>Pharmacogenomics J.</source> <volume>8</volume> (<issue>4</issue>), <fpage>256</fpage>&#x2013;<lpage>267</lpage>. <pub-id pub-id-type="doi">10.1038/sj.tpj.6500476</pub-id>
</citation>
</ref>
<ref id="B21">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Carvalho</surname>
<given-names>F. S.</given-names>
</name>
<name>
<surname>Burgeiro</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Garcia</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Moreno</surname>
<given-names>A. J.</given-names>
</name>
<name>
<surname>Carvalho</surname>
<given-names>R. A.</given-names>
</name>
<name>
<surname>Oliveira</surname>
<given-names>P. J.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Doxorubicin-induced cardiotoxicity: from bioenergetic failure and cell death to cardiomyopathy</article-title>. <source>Med. Res. Rev.</source> <volume>34</volume> (<issue>1</issue>), <fpage>106</fpage>&#x2013;<lpage>135</lpage>. <pub-id pub-id-type="doi">10.1002/med.21280</pub-id>
</citation>
</ref>
<ref id="B22">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chandrasekaran</surname>
<given-names>S. N.</given-names>
</name>
<name>
<surname>Ceulemans</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Boyd</surname>
<given-names>J. D.</given-names>
</name>
<name>
<surname>Carpenter</surname>
<given-names>A. E.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Image-based profiling for drug discovery: due for a machine-learning upgrade?</article-title> <source>Nat. Rev. Drug Discov.</source> <volume>20</volume> (<issue>2</issue>), <fpage>145</fpage>&#x2013;<lpage>159</lpage>. <pub-id pub-id-type="doi">10.1038/s41573-020-00117-w</pub-id>
</citation>
</ref>
<ref id="B23">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chandrasekaran</surname>
<given-names>S. N.</given-names>
</name>
<name>
<surname>Cimini</surname>
<given-names>B. A.</given-names>
</name>
<name>
<surname>Goodale</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Miller</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Kost-Alimova</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Jamali</surname>
<given-names>N.</given-names>
</name>
<etal/>
</person-group> (<year>2024</year>). <article-title>Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations</article-title>. <source>Nat. Methods</source> <volume>21</volume> (<issue>6</issue>), <fpage>1114</fpage>&#x2013;<lpage>1121</lpage>. <pub-id pub-id-type="doi">10.1038/s41592-024-02241-6</pub-id>
</citation>
</ref>
<ref id="B24">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chatterjee</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Honbo</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Karliner</surname>
<given-names>J. S.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>Doxorubicin cardiomyopathy</article-title>. <source>Cardiology</source> <volume>115</volume> (<issue>2</issue>), <fpage>155</fpage>&#x2013;<lpage>162</lpage>. <pub-id pub-id-type="doi">10.1159/000265166</pub-id>
</citation>
</ref>
<ref id="B25">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chu</surname>
<given-names>Q. S. C.</given-names>
</name>
<name>
<surname>Schwartz</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>de Bono</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Smith</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Koch</surname>
<given-names>K. M.</given-names>
</name>
<name>
<surname>Versola</surname>
<given-names>M. J.</given-names>
</name>
<etal/>
</person-group> (<year>2007</year>). <article-title>Phase I and pharmacokinetic study of lapatinib in combination with capecitabine in patients with advanced solid malignancies</article-title>. <source>J. Clin. Oncol.</source> <volume>25</volume> (<issue>24</issue>), <fpage>3753</fpage>&#x2013;<lpage>3758</lpage>. <pub-id pub-id-type="doi">10.1200/JCO.2007.11.1765</pub-id>
</citation>
</ref>
<ref id="B26">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cimini</surname>
<given-names>B. A.</given-names>
</name>
<name>
<surname>Chandrasekaran</surname>
<given-names>S. N.</given-names>
</name>
<name>
<surname>Kost-Alimova</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Miller</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Goodale</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Fritchman</surname>
<given-names>B.</given-names>
</name>
<etal/>
</person-group> (<year>2023</year>). <article-title>Optimizing the cell painting assay for image-based profiling</article-title>. <source>Nat. Protoc.</source> <volume>18</volume> (<issue>7</issue>), <fpage>1981</fpage>&#x2013;<lpage>2013</lpage>. <pub-id pub-id-type="doi">10.1038/s41596-023-00840-9</pub-id>
</citation>
</ref>
<ref id="B27">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Clark</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Steger-Hartmann</surname>
<given-names>T.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>A big data approach to the concordance of the toxicity of pharmaceuticals in animals and humans</article-title>. <source>Regul. Toxicol. Pharmacol.</source> <volume>96</volume>, <fpage>94</fpage>&#x2013;<lpage>105</lpage>. <pub-id pub-id-type="doi">10.1016/j.yrtph.2018.04.018</pub-id>
</citation>
</ref>
<ref id="B28">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Coppola</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Rienzo</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Piscopo</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Barbieri</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Arra</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Maurea</surname>
<given-names>N.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Management of QT prolongation induced by anti-cancer drugs: target therapy and old agents. Different algorithms for different drugs</article-title>. <source>Cancer Treat. Rev.</source> <volume>63</volume>, <fpage>135</fpage>&#x2013;<lpage>143</lpage>. <pub-id pub-id-type="doi">10.1016/j.ctrv.2017.11.009</pub-id>
</citation>
</ref>
<ref id="B29">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cortes</surname>
<given-names>J. E.</given-names>
</name>
<name>
<surname>Kantarjian</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Shah</surname>
<given-names>N. P.</given-names>
</name>
<name>
<surname>Bixby</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Mauro</surname>
<given-names>M. J.</given-names>
</name>
<name>
<surname>Flinn</surname>
<given-names>I.</given-names>
</name>
<etal/>
</person-group> (<year>2012</year>). <article-title>Ponatinib in refractory Philadelphia chromosome-positive leukemias</article-title>. <source>N. Engl. J. Med.</source> <volume>367</volume> (<issue>22</issue>), <fpage>2075</fpage>&#x2013;<lpage>2088</lpage>. <pub-id pub-id-type="doi">10.1056/NEJMoa1205127</pub-id>
</citation>
</ref>
<ref id="B30">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cotileas</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Myrianthefs</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Haralambakis</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Cotsopoulos</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Stamatopoulou</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Ladakis</surname>
<given-names>C.</given-names>
</name>
<etal/>
</person-group> (<year>2000</year>). <article-title>Bupivacaine-induced myocardial depression and pulmonary edema: a case report</article-title>. <source>J. Electrocardiol.</source> <volume>33</volume> (<issue>3</issue>), <fpage>291</fpage>&#x2013;<lpage>296</lpage>. <pub-id pub-id-type="doi">10.1054/jelc.2000.7660</pub-id>
</citation>
</ref>
<ref id="B31">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cui</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Wu</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Lu</surname>
<given-names>W. J.</given-names>
</name>
<name>
<surname>Bai</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Ke</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Liu</surname>
<given-names>T.</given-names>
</name>
<etal/>
</person-group> (<year>2019</year>). <article-title>Doxorubicin-induced cardiotoxicity is maturation dependent due to the shift from topoisomerase II&#x3b1; to II&#x3b2; in human stem cell derived cardiomyocytes</article-title>. <source>J. Cell Mol. Med.</source> <volume>23</volume> (<issue>7</issue>), <fpage>4627</fpage>&#x2013;<lpage>4639</lpage>. <pub-id pub-id-type="doi">10.1111/jcmm.14346</pub-id>
</citation>
</ref>
<ref id="B32">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>da Rocha</surname>
<given-names>A. M.</given-names>
</name>
<name>
<surname>Campbell</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Mironov</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Jiang</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Mundada</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Guerrero-Serna</surname>
<given-names>G.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>hiPSC-CM monolayer maturation state determines drug responsiveness in high throughput pro-arrhythmia screen</article-title>. <source>Sci. Rep.</source> <volume>7</volume> (<issue>1</issue>), <fpage>13834</fpage>. <pub-id pub-id-type="doi">10.1038/s41598-017-13590-y</pub-id>
</citation>
</ref>
<ref id="B33">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>de Jong</surname>
<given-names>L. A. W.</given-names>
</name>
<name>
<surname>Lambert</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>van Erp</surname>
<given-names>N. P.</given-names>
</name>
<name>
<surname>de Vries</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Chatelut</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Ottevanger</surname>
<given-names>P. B.</given-names>
</name>
</person-group> (<year>2023</year>). <article-title>Systemic exposure to cisplatin and paclitaxel after intraperitoneal chemotherapy in ovarian cancer</article-title>. <source>Cancer Chemother. Pharmacol.</source> <volume>91</volume> (<issue>3</issue>), <fpage>247</fpage>&#x2013;<lpage>256</lpage>. <pub-id pub-id-type="doi">10.1007/s00280-023-04512-z</pub-id>
</citation>
</ref>
<ref id="B34">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Dobin</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Davis</surname>
<given-names>C. A.</given-names>
</name>
<name>
<surname>Schlesinger</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Drenkow</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Zaleski</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Jha</surname>
<given-names>S.</given-names>
</name>
<etal/>
</person-group> (<year>2013</year>). <article-title>STAR: ultrafast universal RNA-seq aligner</article-title>. <source>Bioinformatics</source> <volume>29</volume> (<issue>1</issue>), <fpage>15</fpage>&#x2013;<lpage>21</lpage>. <pub-id pub-id-type="doi">10.1093/bioinformatics/bts635</pub-id>
</citation>
</ref>
<ref id="B35">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Duyk</surname>
<given-names>G.</given-names>
</name>
</person-group> (<year>2003</year>). <article-title>Attrition and translation</article-title>. <source>Science</source> <volume>302</volume> (<issue>5645</issue>), <fpage>603</fpage>&#x2013;<lpage>605</lpage>. <pub-id pub-id-type="doi">10.1126/science.1090521</pub-id>
</citation>
</ref>
<ref id="B36">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Falk</surname>
<given-names>R. H.</given-names>
</name>
<name>
<surname>Decara</surname>
<given-names>J. M.</given-names>
</name>
</person-group> (<year>2000</year>). <article-title>Dofetilide: a new pure class III antiarrhythmic agent</article-title>. <source>Am. Heart J.</source> <volume>140</volume> (<issue>5</issue>), <fpage>697</fpage>&#x2013;<lpage>706</lpage>. <pub-id pub-id-type="doi">10.1067/mhj.2000.110457</pub-id>
</citation>
</ref>
<ref id="B37">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fan</surname>
<given-names>S.-Z.</given-names>
</name>
<name>
<surname>Yu</surname>
<given-names>H.-Y.</given-names>
</name>
<name>
<surname>Chen</surname>
<given-names>Y.-L.</given-names>
</name>
<name>
<surname>Liu</surname>
<given-names>C.-C.</given-names>
</name>
</person-group> (<year>1995</year>). <article-title>Propofol concentration monitoring in plasma or whole blood by gas chromatography and high-performance liquid chromatography</article-title>. <source>Anesth. Analgesia</source> <volume>81</volume> (<issue>1</issue>), <fpage>175</fpage>&#x2013;<lpage>178</lpage>. <pub-id pub-id-type="doi">10.1097/00000539-199507000-00036</pub-id>
</citation>
</ref>
<ref id="B38">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fermini</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Coyne</surname>
<given-names>S. T.</given-names>
</name>
<name>
<surname>Coyne</surname>
<given-names>K. P.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Clinical trials in a dish: a perspective on the coming revolution in drug development</article-title>. <source>SLAS Discov.</source> <volume>23</volume> (<issue>8</issue>), <fpage>765</fpage>&#x2013;<lpage>776</lpage>. <pub-id pub-id-type="doi">10.1177/2472555218775028</pub-id>
</citation>
</ref>
<ref id="B39">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Feyen</surname>
<given-names>D. A. M.</given-names>
</name>
<name>
<surname>McKeithan</surname>
<given-names>W. L.</given-names>
</name>
<name>
<surname>Bruyneel</surname>
<given-names>A. A. N.</given-names>
</name>
<name>
<surname>Spiering</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>H&#xf6;rmann</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Ulmer</surname>
<given-names>B.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>Metabolic maturation media improve physiological function of human iPSC-derived cardiomyocytes</article-title>. <source>Cell Rep.</source> <volume>32</volume> (<issue>3</issue>), <fpage>107925</fpage>. <pub-id pub-id-type="doi">10.1016/j.celrep.2020.107925</pub-id>
</citation>
</ref>
<ref id="B40">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fontes</surname>
<given-names>M. S.</given-names>
</name>
<name>
<surname>van Veen</surname>
<given-names>T. A.</given-names>
</name>
<name>
<surname>de Bakker</surname>
<given-names>J. M.</given-names>
</name>
<name>
<surname>van Rijen</surname>
<given-names>H. V.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Functional consequences of abnormal Cx43 expression in the heart</article-title>. <source>Biochim. Biophys. Acta</source> <volume>1818</volume> (<issue>8</issue>), <fpage>2020</fpage>&#x2013;<lpage>2029</lpage>. <pub-id pub-id-type="doi">10.1016/j.bbamem.2011.07.039</pub-id>
</citation>
</ref>
<ref id="B41">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fowler</surname>
<given-names>J. L.</given-names>
</name>
<name>
<surname>Ang</surname>
<given-names>L. T.</given-names>
</name>
<name>
<surname>Loh</surname>
<given-names>K. M.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>A critical look: challenges in differentiating human pluripotent stem cells into desired cell types and organoids</article-title>. <source>Wiley Interdiscip. Rev. Dev. Biol.</source> <volume>9</volume> (<issue>3</issue>), <fpage>e368</fpage>. <pub-id pub-id-type="doi">10.1002/wdev.368</pub-id>
</citation>
</ref>
<ref id="B42">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Giovannetti</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Peters</surname>
<given-names>G.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Beyond animal models: implementing the 3Rs principles and improving pharmacological studies with new model systems</article-title>. <source>Expert Opin. Drug Metab. Toxicol.</source> <volume>17</volume> (<issue>8</issue>), <fpage>867</fpage>&#x2013;<lpage>868</lpage>. <pub-id pub-id-type="doi">10.1080/17425255.2021.1948731</pub-id>
</citation>
</ref>
<ref id="B43">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gona</surname>
<given-names>S. R.</given-names>
</name>
<name>
<surname>Rosenberg</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Fyffe-Freil</surname>
<given-names>R. C.</given-names>
</name>
<name>
<surname>Kozakiewicz</surname>
<given-names>J. M.</given-names>
</name>
<name>
<surname>Money</surname>
<given-names>M. E.</given-names>
</name>
</person-group> (<year>2023</year>). <article-title>Review: failure of current digoxin monitoring for toxicity: new monitoring recommendations to maintain therapeutic levels for efficacy</article-title>. <source>Front. Cardiovasc. Med.</source> <volume>10</volume>, <fpage>1179892</fpage>. <pub-id pub-id-type="doi">10.3389/fcvm.2023.1179892</pub-id>
</citation>
</ref>
<ref id="B44">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gover-Proaktor</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Granot</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Shapira</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Raz</surname>
<given-names>O.</given-names>
</name>
<name>
<surname>Pasvolsky</surname>
<given-names>O.</given-names>
</name>
<name>
<surname>Nagler</surname>
<given-names>A.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>Ponatinib reduces viability, migration, and functionality of human endothelial cells</article-title>. <source>Leuk. Lymphoma</source> <volume>58</volume> (<issue>6</issue>), <fpage>1455</fpage>&#x2013;<lpage>1467</lpage>. <pub-id pub-id-type="doi">10.1080/10428194.2016.1239258</pub-id>
</citation>
</ref>
<ref id="B45">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gruber</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Czejka</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Buchner</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Kitzmueller</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Kirchbaumer Baroian</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Dittrich</surname>
<given-names>C.</given-names>
</name>
<etal/>
</person-group> (<year>2018</year>). <article-title>Monitoring of erlotinib in pancreatic cancer patients during long-time administration and comparison to a physiologically based pharmacokinetic model</article-title>. <source>Cancer Chemother. Pharmacol.</source> <volume>81</volume> (<issue>4</issue>), <fpage>763</fpage>&#x2013;<lpage>771</lpage>. <pub-id pub-id-type="doi">10.1007/s00280-018-3545-4</pub-id>
</citation>
</ref>
<ref id="B46">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Haguet</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Bouvy</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Delvigne</surname>
<given-names>A.-S.</given-names>
</name>
<name>
<surname>Modaffari</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Wannez</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Sonveaux</surname>
<given-names>P.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>The risk of arterial thrombosis in patients with chronic myeloid leukemia treated with second and third generation BCR-ABL tyrosine kinase inhibitors may be explained by their impact on endothelial cells: an <italic>in-vitro</italic> study</article-title>. <source>Front. Pharmacol.</source> <volume>11</volume>, <fpage>1007</fpage>. <pub-id pub-id-type="doi">10.3389/fphar.2020.01007</pub-id>
</citation>
</ref>
<ref id="B47">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hinkson</surname>
<given-names>I. V.</given-names>
</name>
<name>
<surname>Madej</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Stahlberg</surname>
<given-names>E. A.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Accelerating therapeutics for opportunities in medicine: a paradigm shift in drug discovery</article-title>. <source>Front. Pharmacol.</source> <volume>11</volume>, <fpage>770</fpage>. <pub-id pub-id-type="doi">10.3389/fphar.2020.00770</pub-id>
</citation>
</ref>
<ref id="B48">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Holmgren</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Sartipy</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Andersson</surname>
<given-names>C. X.</given-names>
</name>
<name>
<surname>Lindahl</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Synnergren</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Expression profiling of human pluripotent stem cell-derived cardiomyocytes exposed to doxorubicin-integration and visualization of multi-omics data</article-title>. <source>Toxicol. Sci.</source> <volume>163</volume> (<issue>1</issue>), <fpage>182</fpage>&#x2013;<lpage>195</lpage>. <pub-id pub-id-type="doi">10.1093/toxsci/kfy012</pub-id>
</citation>
</ref>
<ref id="B49">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Homewood</surname>
<given-names>C. A.</given-names>
</name>
<name>
<surname>Warhurst</surname>
<given-names>D. C.</given-names>
</name>
<name>
<surname>Peters</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Baggaley</surname>
<given-names>V. C.</given-names>
</name>
</person-group> (<year>1972</year>). <article-title>Lysosomes, pH and the anti-malarial action of chloroquine</article-title>. <source>Nature</source> <volume>235</volume> (<issue>5332</issue>), <fpage>50</fpage>&#x2013;<lpage>52</lpage>. <pub-id pub-id-type="doi">10.1038/235050a0</pub-id>
</citation>
</ref>
<ref id="B50">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hsu</surname>
<given-names>W. T.</given-names>
</name>
<name>
<surname>Huang</surname>
<given-names>C. Y.</given-names>
</name>
<name>
<surname>Yen</surname>
<given-names>C. Y. T.</given-names>
</name>
<name>
<surname>Cheng</surname>
<given-names>A. L.</given-names>
</name>
<name>
<surname>Hsieh</surname>
<given-names>P. C. H.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>The HER2 inhibitor lapatinib potentiates doxorubicin-induced cardiotoxicity through iNOS signaling</article-title>. <source>Theranostics</source> <volume>8</volume> (<issue>12</issue>), <fpage>3176</fpage>&#x2013;<lpage>3188</lpage>. <pub-id pub-id-type="doi">10.7150/thno.23207</pub-id>
</citation>
</ref>
<ref id="B51">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hu</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Onel</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Singla</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Kramer</surname>
<given-names>W. G.</given-names>
</name>
<name>
<surname>Hadzic</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Pharmacokinetic profile of liposome bupivacaine injection following a single administration at the surgical site</article-title>. <source>Clin. Drug Investig.</source> <volume>33</volume> (<issue>2</issue>), <fpage>109</fpage>&#x2013;<lpage>115</lpage>. <pub-id pub-id-type="doi">10.1007/s40261-012-0043-z</pub-id>
</citation>
</ref>
<ref id="B52">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Huang da</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Sherman</surname>
<given-names>B. T.</given-names>
</name>
<name>
<surname>Lempicki</surname>
<given-names>R. A.</given-names>
</name>
</person-group> (<year>2009</year>). <article-title>Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources</article-title>. <source>Nat. Protoc.</source> <volume>4</volume> (<issue>1</issue>), <fpage>44</fpage>&#x2013;<lpage>57</lpage>. <pub-id pub-id-type="doi">10.1038/nprot.2008.211</pub-id>
</citation>
</ref>
<ref id="B53">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hughes</surname>
<given-names>R. E.</given-names>
</name>
<name>
<surname>Elliott</surname>
<given-names>R. J. R.</given-names>
</name>
<name>
<surname>Munro</surname>
<given-names>A. F.</given-names>
</name>
<name>
<surname>Makda</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>O&#x27;Neill</surname>
<given-names>J. R.</given-names>
</name>
<name>
<surname>Hupp</surname>
<given-names>T.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>High-content phenotypic profiling in esophageal adenocarcinoma identifies selectively active pharmacological classes of drugs for repurposing and chemical starting points for novel drug discovery</article-title>. <source>SLAS Discov.</source> <volume>25</volume> (<issue>7</issue>), <fpage>770</fpage>&#x2013;<lpage>782</lpage>. <pub-id pub-id-type="doi">10.1177/2472555220917115</pub-id>
</citation>
</ref>
<ref id="B54">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Inoue</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Yuasa</surname>
<given-names>H.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Molecular basis for pharmacokinetics and pharmacodynamics of methotrexate in rheumatoid arthritis therapy</article-title>. <source>Drug Metabolism Pharmacokinet.</source> <volume>29</volume> (<issue>1</issue>), <fpage>12</fpage>&#x2013;<lpage>19</lpage>. <pub-id pub-id-type="doi">10.2133/dmpk.dmpk-13-rv-119</pub-id>
</citation>
</ref>
<ref id="B55">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Javaid</surname>
<given-names>H. M. A.</given-names>
</name>
<name>
<surname>Lim</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Shin</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Huh</surname>
<given-names>J. Y.</given-names>
</name>
</person-group> (<year>2022</year>). <article-title>Inhibition of autophagy with chloroquine dysregulates mitochondrial quality control and energetics in adipocytes</article-title>. <source>Arch. Pharm. Res.</source> <volume>45</volume> (<issue>10</issue>), <fpage>731</fpage>&#x2013;<lpage>742</lpage>. <pub-id pub-id-type="doi">10.1007/s12272-022-01412-3</pub-id>
</citation>
</ref>
<ref id="B56">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Jia</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Xue</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Yan</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Li</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Wu</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Guo</surname>
<given-names>R.</given-names>
</name>
<etal/>
</person-group> (<year>2018</year>). <article-title>Autophagy inhibitor chloroquine induces apoptosis of cholangiocarcinoma cells via endoplasmic reticulum stress</article-title>. <source>Oncol. Lett.</source> <volume>16</volume> (<issue>3</issue>), <fpage>3509</fpage>&#x2013;<lpage>3516</lpage>. <pub-id pub-id-type="doi">10.3892/ol.2018.9131</pub-id>
</citation>
</ref>
<ref id="B57">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kanani</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Gatoulis</surname>
<given-names>S. C.</given-names>
</name>
<name>
<surname>Voelker</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Influence of differing analgesic formulations of aspirin on pharmacokinetic parameters</article-title>. <source>Pharmaceutics</source> <volume>7</volume> (<issue>3</issue>), <fpage>188</fpage>&#x2013;<lpage>198</lpage>. <pub-id pub-id-type="doi">10.3390/pharmaceutics7030188</pub-id>
</citation>
</ref>
<ref id="B58">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kloth</surname>
<given-names>J. S.</given-names>
</name>
<name>
<surname>Pagani</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Verboom</surname>
<given-names>M. C.</given-names>
</name>
<name>
<surname>Malovini</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Napolitano</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Kruit</surname>
<given-names>W. H.</given-names>
</name>
<etal/>
</person-group> (<year>2015</year>). <article-title>Incidence and relevance of QTc-interval prolongation caused by tyrosine kinase inhibitors</article-title>. <source>Br. J. Cancer</source> <volume>112</volume> (<issue>6</issue>), <fpage>1011</fpage>&#x2013;<lpage>1016</lpage>. <pub-id pub-id-type="doi">10.1038/bjc.2015.82</pub-id>
</citation>
</ref>
<ref id="B59">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kopljar</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Lu</surname>
<given-names>H. R.</given-names>
</name>
<name>
<surname>Van Ammel</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Otava</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Tekle</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Teisman</surname>
<given-names>A.</given-names>
</name>
<etal/>
</person-group> (<year>2018</year>). <article-title>Development of a human iPSC cardiomyocyte-based scoring system for cardiac hazard identification in early drug safety de-risking</article-title>. <source>Stem Cell Rep.</source> <volume>11</volume> (<issue>6</issue>), <fpage>1365</fpage>&#x2013;<lpage>1377</lpage>. <pub-id pub-id-type="doi">10.1016/j.stemcr.2018.11.007</pub-id>
</citation>
</ref>
<ref id="B60">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Krajcova</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Nemcova</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Halacova</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Waldauf</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Balik</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Duska</surname>
<given-names>F.</given-names>
</name>
</person-group> (<year>2023</year>). <article-title>Amiodarone but not propafenone impairs bioenergetics and autophagy of human myocardial cells</article-title>. <source>Toxicol. Appl. Pharmacol.</source> <volume>477</volume>, <fpage>116676</fpage>. <pub-id pub-id-type="doi">10.1016/j.taap.2023.116676</pub-id>
</citation>
</ref>
<ref id="B61">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Laverty</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Benson</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Cartwright</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Cross</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Garland</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Hammond</surname>
<given-names>T.</given-names>
</name>
<etal/>
</person-group> (<year>2011</year>). <article-title>How can we improve our understanding of cardiovascular safety liabilities to develop safer medicines?</article-title> <source>Br. J. Pharmacol.</source> <volume>163</volume> (<issue>4</issue>), <fpage>675</fpage>&#x2013;<lpage>693</lpage>. <pub-id pub-id-type="doi">10.1111/j.1476-5381.2011.01255.x</pub-id>
</citation>
</ref>
<ref id="B62">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Leys</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Ley</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Klein</surname>
<given-names>O.</given-names>
</name>
<name>
<surname>Bernard</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Licata</surname>
<given-names>L.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Detecting outliers: do not use standard deviation around the mean, use absolute deviation around the median</article-title>. <source>J. Exp. Soc. Psychol.</source> <volume>49</volume> (<issue>4</issue>), <fpage>764</fpage>&#x2013;<lpage>766</lpage>. <pub-id pub-id-type="doi">10.1016/j.jesp.2013.03.013</pub-id>
</citation>
</ref>
<ref id="B63">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Li</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Dewey</surname>
<given-names>C. N.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome</article-title>. <source>BMC Bioinforma.</source> <volume>12</volume> (<issue>1</issue>), <fpage>323</fpage>. <pub-id pub-id-type="doi">10.1186/1471-2105-12-323</pub-id>
</citation>
</ref>
<ref id="B64">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Li</surname>
<given-names>Z. X.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>T. T.</given-names>
</name>
<name>
<surname>Wu</surname>
<given-names>Y. T.</given-names>
</name>
<name>
<surname>Xu</surname>
<given-names>C. M.</given-names>
</name>
<name>
<surname>Dong</surname>
<given-names>M. Y.</given-names>
</name>
<name>
<surname>Sheng</surname>
<given-names>J. Z.</given-names>
</name>
<etal/>
</person-group> (<year>2008</year>). <article-title>Adriamycin induces H2AX phosphorylation in human spermatozoa</article-title>. <source>Asian J. Androl.</source> <volume>10</volume> (<issue>5</issue>), <fpage>749</fpage>&#x2013;<lpage>757</lpage>. <pub-id pub-id-type="doi">10.1111/j.1745-7262.2008.00400.x</pub-id>
</citation>
</ref>
<ref id="B65">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Li</surname>
<given-names>D. L.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>Z. V.</given-names>
</name>
<name>
<surname>Ding</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Tan</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Luo</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Criollo</surname>
<given-names>A.</given-names>
</name>
<etal/>
</person-group> (<year>2016</year>). <article-title>Doxorubicin blocks cardiomyocyte autophagic flux by inhibiting lysosome acidification</article-title>. <source>Circulation</source> <volume>133</volume> (<issue>17</issue>), <fpage>1668</fpage>&#x2013;<lpage>1687</lpage>. <pub-id pub-id-type="doi">10.1161/CIRCULATIONAHA.115.017443</pub-id>
</citation>
</ref>
<ref id="B66">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Li</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Gao</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Jiang</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Qin</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Gong</surname>
<given-names>G.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Mitochondrial dynamics in adult cardiomyocytes and heart diseases</article-title>. <source>Front. Cell Dev. Biol.</source> <volume>8</volume>, <fpage>584800</fpage>. <pub-id pub-id-type="doi">10.3389/fcell.2020.584800</pub-id>
</citation>
</ref>
<ref id="B67">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lim</surname>
<given-names>H. E.</given-names>
</name>
<name>
<surname>Pak</surname>
<given-names>H. N.</given-names>
</name>
<name>
<surname>Ahn</surname>
<given-names>J. C.</given-names>
</name>
<name>
<surname>Song</surname>
<given-names>W. H.</given-names>
</name>
<name>
<surname>Kim</surname>
<given-names>Y. H.</given-names>
</name>
</person-group> (<year>2006</year>). <article-title>Torsade de pointes induced by short-term oral amiodarone therapy</article-title>. <source>Europace</source> <volume>8</volume> (<issue>12</issue>), <fpage>1051</fpage>&#x2013;<lpage>1053</lpage>. <pub-id pub-id-type="doi">10.1093/europace/eul118</pub-id>
</citation>
</ref>
<ref id="B68">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Louch</surname>
<given-names>W. E.</given-names>
</name>
<name>
<surname>Sheehan</surname>
<given-names>K. A.</given-names>
</name>
<name>
<surname>Wolska</surname>
<given-names>B. M.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Methods in cardiomyocyte isolation, culture, and gene transfer</article-title>. <source>J. Mol. Cell Cardiol.</source> <volume>51</volume> (<issue>3</issue>), <fpage>288</fpage>&#x2013;<lpage>298</lpage>. <pub-id pub-id-type="doi">10.1016/j.yjmcc.2011.06.012</pub-id>
</citation>
</ref>
<ref id="B69">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Louisse</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Wust</surname>
<given-names>R. C. I.</given-names>
</name>
<name>
<surname>Pistollato</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Palosaari</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Barilari</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Macko</surname>
<given-names>P.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>Assessment of acute and chronic toxicity of doxorubicin in human induced pluripotent stem cell-derived cardiomyocytes</article-title>. <source>Toxicol Vitro</source> <volume>42</volume>, <fpage>182</fpage>&#x2013;<lpage>190</lpage>. <pub-id pub-id-type="doi">10.1016/j.tiv.2017.04.023</pub-id>
</citation>
</ref>
<ref id="B70">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lu</surname>
<given-names>H. R.</given-names>
</name>
<name>
<surname>Marien</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Saels</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>De Clerck</surname>
<given-names>F.</given-names>
</name>
</person-group> (<year>2001</year>). <article-title>Species plays an important role in drug-induced prolongation of action potential duration and early afterdepolarizations in isolated Purkinje fibers</article-title>. <source>J. Cardiovasc Electrophysiol.</source> <volume>12</volume> (<issue>1</issue>), <fpage>93</fpage>&#x2013;<lpage>102</lpage>. <pub-id pub-id-type="doi">10.1046/j.1540-8167.2001.00093.x</pub-id>
</citation>
</ref>
<ref id="B71">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lun</surname>
<given-names>A. T.</given-names>
</name>
<name>
<surname>Chen</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Smyth</surname>
<given-names>G. K.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>It&#x27;s DE-licious: a recipe for differential expression analyses of RNA-seq experiments using quasi-likelihood methods in edgeR</article-title>. <source>Methods Mol. Biol.</source> <volume>1418</volume>, <fpage>391</fpage>&#x2013;<lpage>416</lpage>. <pub-id pub-id-type="doi">10.1007/978-1-4939-3578-9_19</pub-id>
</citation>
</ref>
<ref id="B72">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Madonna</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Moscato</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Polizzi</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Pieragostino</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Cufaro</surname>
<given-names>M. C.</given-names>
</name>
<name>
<surname>Del Boccio</surname>
<given-names>P.</given-names>
</name>
<etal/>
</person-group> (<year>2021</year>). <article-title>Connexin 43 and connexin 26 involvement in the ponatinib-induced cardiomyopathy: sex-related differences in a murine model</article-title>. <source>Int. J. Mol. Sci.</source> <volume>22</volume> (<issue>11</issue>), <fpage>5815</fpage>. <pub-id pub-id-type="doi">10.3390/ijms22115815</pub-id>
</citation>
</ref>
<ref id="B73">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Meki</surname>
<given-names>M. H.</given-names>
</name>
<name>
<surname>Miller</surname>
<given-names>J. M.</given-names>
</name>
<name>
<surname>Mohamed</surname>
<given-names>T. M. A.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Heart slices to model cardiac physiology</article-title>. <source>Front. Pharmacol.</source> <volume>12</volume>, <fpage>617922</fpage>. <pub-id pub-id-type="doi">10.3389/fphar.2021.617922</pub-id>
</citation>
</ref>
<ref id="B74">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Miller</surname>
<given-names>J. M.</given-names>
</name>
<name>
<surname>Meki</surname>
<given-names>M. H.</given-names>
</name>
<name>
<surname>Ou</surname>
<given-names>Q.</given-names>
</name>
<name>
<surname>George</surname>
<given-names>S. A.</given-names>
</name>
<name>
<surname>Gams</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Abouleisa</surname>
<given-names>R. R. E.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>Heart slice culture system reliably demonstrates clinical drug-related cardiotoxicity</article-title>. <source>Toxicol. Appl. Pharmacol.</source> <volume>406</volume>, <fpage>115213</fpage>. <pub-id pub-id-type="doi">10.1016/j.taap.2020.115213</pub-id>
</citation>
</ref>
<ref id="B75">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Niimi</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Yako</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Tsukamoto</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Takaku</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Yamauchi</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Kawakami</surname>
<given-names>E.</given-names>
</name>
<etal/>
</person-group> (<year>2016</year>). <article-title>Involvement of oxidative stress and impaired lysosomal degradation in amiodarone-induced schwannopathy</article-title>. <source>Eur. J. Neurosci.</source> <volume>44</volume> (<issue>1</issue>), <fpage>1723</fpage>&#x2013;<lpage>1733</lpage>. <pub-id pub-id-type="doi">10.1111/ejn.13268</pub-id>
</citation>
</ref>
<ref id="B76">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Nyffeler</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Willis</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Lougee</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Richard</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Paul-Friedman</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Harrill</surname>
<given-names>J. A.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Bioactivity screening of environmental chemicals using imaging-based high-throughput phenotypic profiling</article-title>. <source>Toxicol. Appl. Pharmacol.</source> <volume>389</volume>, <fpage>114876</fpage>. <pub-id pub-id-type="doi">10.1016/j.taap.2019.114876</pub-id>
</citation>
</ref>
<ref id="B77">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Osama</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Pendela</surname>
<given-names>V. S.</given-names>
</name>
<name>
<surname>Mohamed</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Parikh</surname>
<given-names>V.</given-names>
</name>
</person-group> (<year>2024</year>). <article-title>Trigger-point bupivacaine injection causing A &#x201c;heart-break&#x201d;</article-title>. <source>J. Cardiac Fail.</source> <volume>30</volume> (<issue>1</issue>), <fpage>276</fpage>&#x2013;<lpage>277</lpage>. <pub-id pub-id-type="doi">10.1016/j.cardfail.2023.10.378</pub-id>
</citation>
</ref>
<ref id="B78">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Osataphan</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Phrommintikul</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Chattipakorn</surname>
<given-names>S. C.</given-names>
</name>
<name>
<surname>Chattipakorn</surname>
<given-names>N.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Effects of doxorubicin-induced cardiotoxicity on cardiac mitochondrial dynamics and mitochondrial function: insights for future interventions</article-title>. <source>J. Cell Mol. Med.</source> <volume>24</volume> (<issue>12</issue>), <fpage>6534</fpage>&#x2013;<lpage>6557</lpage>. <pub-id pub-id-type="doi">10.1111/jcmm.15305</pub-id>
</citation>
</ref>
<ref id="B79">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pahl</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Sievers</surname>
<given-names>S.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>The cell painting assay as a screening tool for the discovery of bioactivities in new chemical matter</article-title>. <source>Methods Mol. Biol.</source> <volume>1888</volume>, <fpage>115</fpage>&#x2013;<lpage>126</lpage>. <pub-id pub-id-type="doi">10.1007/978-1-4939-8891-4_6</pub-id>
</citation>
</ref>
<ref id="B80">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Parra</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Eisner</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Chiong</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Criollo</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Moraga</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Garcia</surname>
<given-names>A.</given-names>
</name>
<etal/>
</person-group> (<year>2008</year>). <article-title>Changes in mitochondrial dynamics during ceramide-induced cardiomyocyte early apoptosis</article-title>. <source>Cardiovasc Res.</source> <volume>77</volume> (<issue>2</issue>), <fpage>387</fpage>&#x2013;<lpage>397</lpage>. <pub-id pub-id-type="doi">10.1093/cvr/cvm029</pub-id>
</citation>
</ref>
<ref id="B81">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pecoraro</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Sorrentino</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Franceschelli</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Del Pizzo</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Pinto</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Popolo</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Doxorubicin-Mediated cardiotoxicity: role of mitochondrial connexin 43</article-title>. <source>Cardiovasc Toxicol.</source> <volume>15</volume> (<issue>4</issue>), <fpage>366</fpage>&#x2013;<lpage>376</lpage>. <pub-id pub-id-type="doi">10.1007/s12012-014-9305-8</pub-id>
</citation>
</ref>
<ref id="B82">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pecoraro</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Rodriguez-Sinovas</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Marzocco</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Ciccarelli</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Iaccarino</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Pinto</surname>
<given-names>A.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>Cardiotoxic effects of short-term doxorubicin administration: involvement of connexin 43 in calcium impairment</article-title>. <source>Int. J. Mol. Sci.</source> <volume>18</volume> (<issue>10</issue>), <fpage>2121</fpage>. <pub-id pub-id-type="doi">10.3390/ijms18102121</pub-id>
</citation>
</ref>
<ref id="B83">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Perez-Enciso</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Tenenhaus</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2003</year>). <article-title>Prediction of clinical outcome with microarray data: a partial least squares discriminant analysis (PLS-DA) approach</article-title>. <source>Hum. Genet.</source> <volume>112</volume> (<issue>5-6</issue>), <fpage>581</fpage>&#x2013;<lpage>592</lpage>. <pub-id pub-id-type="doi">10.1007/s00439-003-0921-9</pub-id>
</citation>
</ref>
<ref id="B84">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Polk</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Vistisen</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Vaage-Nilsen</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Nielsen</surname>
<given-names>D. L.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>A systematic review of the pathophysiology of 5-fluorouracil-induced cardiotoxicity</article-title>. <source>BMC Pharmacol. Toxicol.</source> <volume>15</volume> (<issue>1</issue>), <fpage>47</fpage>. <pub-id pub-id-type="doi">10.1186/2050-6511-15-47</pub-id>
</citation>
</ref>
<ref id="B85">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rivera-Calimlim</surname>
<given-names>L.</given-names>
</name>
</person-group> (<year>1982</year>). <article-title>Problems in therapeutic blood monitoring of chlorpromazine</article-title>. <source>Ther. Drug Monit.</source> <volume>4</volume> (<issue>1</issue>), <fpage>41</fpage>&#x2013;<lpage>49</lpage>. <pub-id pub-id-type="doi">10.1097/00007691-198204000-00006</pub-id>
</citation>
</ref>
<ref id="B86">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sagini</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Buratta</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Delo</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Pellegrino</surname>
<given-names>R. M.</given-names>
</name>
<name>
<surname>Giovagnoli</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Urbanelli</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2021</year>). <article-title>Drug-induced lysosomal impairment is associated with the release of extracellular vesicles carrying autophagy markers</article-title>. <source>Int. J. Mol. Sci.</source> <volume>22</volume> (<issue>23</issue>), <fpage>12922</fpage>. <pub-id pub-id-type="doi">10.3390/ijms222312922</pub-id>
</citation>
</ref>
<ref id="B87">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sayegh</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Yirerong</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Agarwal</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Addison</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Fradley</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Cortes</surname>
<given-names>J.</given-names>
</name>
<etal/>
</person-group> (<year>2023</year>). <article-title>Cardiovascular toxicities associated with tyrosine kinase inhibitors</article-title>. <source>Curr. Cardiol. Rep.</source> <volume>25</volume> (<issue>4</issue>), <fpage>269</fpage>&#x2013;<lpage>280</lpage>. <pub-id pub-id-type="doi">10.1007/s11886-023-01845-2</pub-id>
</citation>
</ref>
<ref id="B88">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Scheen</surname>
<given-names>A. J.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Pharmacokinetic and pharmacodynamic profile of empagliflozin, a sodium glucose co-transporter 2 inhibitor</article-title>. <source>Clin. Pharmacokinet.</source> <volume>53</volume> (<issue>3</issue>), <fpage>213</fpage>&#x2013;<lpage>225</lpage>. <pub-id pub-id-type="doi">10.1007/s40262-013-0126-x</pub-id>
</citation>
</ref>
<ref id="B89">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Schmid</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Abi-Gerges</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Leitner</surname>
<given-names>M. G.</given-names>
</name>
<name>
<surname>Zellner</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Rast</surname>
<given-names>G.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Ion Channel expression and electrophysiology of singular human (primary and induced pluripotent stem cell-derived) cardiomyocytes</article-title>. <source>Cells</source> <volume>10</volume> (<issue>12</issue>), <fpage>3370</fpage>. <pub-id pub-id-type="doi">10.3390/cells10123370</pub-id>
</citation>
</ref>
<ref id="B90">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Seibertz</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Sutanto</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Dulk</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Pronto</surname>
<given-names>J. R. D.</given-names>
</name>
<name>
<surname>Springer</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Rapedius</surname>
<given-names>M.</given-names>
</name>
<etal/>
</person-group> (<year>2023</year>). <article-title>Electrophysiological and calcium-handling development during long-term culture of human-induced pluripotent stem cell-derived cardiomyocytes</article-title>. <source>Basic Res. Cardiol.</source> <volume>118</volume> (<issue>1</issue>), <fpage>14</fpage>. <pub-id pub-id-type="doi">10.1007/s00395-022-00973-0</pub-id>
</citation>
</ref>
<ref id="B91">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sharma</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Burridge</surname>
<given-names>P. W.</given-names>
</name>
<name>
<surname>McKeithan</surname>
<given-names>W. L.</given-names>
</name>
<name>
<surname>Serrano</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Shukla</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Sayed</surname>
<given-names>N.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>High-throughput screening of tyrosine kinase inhibitor cardiotoxicity with human induced pluripotent stem cells</article-title>. <source>Sci. Transl. Med.</source> <volume>9</volume> (<issue>377</issue>), <fpage>eaaf2584</fpage>. <pub-id pub-id-type="doi">10.1126/scitranslmed.aaf2584</pub-id>
</citation>
</ref>
<ref id="B92">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Smith</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Heger</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Sudbery</surname>
<given-names>I.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy</article-title>. <source>Genome Res.</source> <volume>27</volume> (<issue>3</issue>), <fpage>491</fpage>&#x2013;<lpage>499</lpage>. <pub-id pub-id-type="doi">10.1101/gr.209601.116</pub-id>
</citation>
</ref>
<ref id="B93">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Soultati</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Mountzios</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Avgerinou</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Papaxoinis</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Pectasides</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Dimopoulos</surname>
<given-names>M. A.</given-names>
</name>
<etal/>
</person-group> (<year>2012</year>). <article-title>Endothelial vascular toxicity from chemotherapeutic agents: preclinical evidence and clinical implications</article-title>. <source>Cancer Treat. Rev.</source> <volume>38</volume> (<issue>5</issue>), <fpage>473</fpage>&#x2013;<lpage>483</lpage>. <pub-id pub-id-type="doi">10.1016/j.ctrv.2011.09.002</pub-id>
</citation>
</ref>
<ref id="B94">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Stoetzer</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Doll</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Stueber</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Herzog</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Echtermeyer</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Greulich</surname>
<given-names>F.</given-names>
</name>
<etal/>
</person-group> (<year>2016</year>). <article-title>Tetrodotoxin-sensitive alpha-subunits of voltage-gated sodium channels are relevant for inhibition of cardiac sodium currents by local anesthetics</article-title>. <source>Naunyn Schmiedeb. Arch. Pharmacol.</source> <volume>389</volume> (<issue>6</issue>), <fpage>625</fpage>&#x2013;<lpage>636</lpage>. <pub-id pub-id-type="doi">10.1007/s00210-016-1231-9</pub-id>
</citation>
</ref>
<ref id="B95">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sun</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Gao</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Hu</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Zhou</surname>
<given-names>S.</given-names>
</name>
</person-group> (<year>2022</year>). <article-title>Why 90% of clinical drug development fails and how to improve it?</article-title> <source>Acta Pharm. Sin. B</source> <volume>12</volume> (<issue>7</issue>), <fpage>3049</fpage>&#x2013;<lpage>3062</lpage>. <pub-id pub-id-type="doi">10.1016/j.apsb.2022.02.002</pub-id>
</citation>
</ref>
<ref id="B96">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tagle-Cornell</surname>
<given-names>M. C.</given-names>
</name>
<name>
<surname>Ayoub</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Bird</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Pereyra</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Kenyon</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Kamel</surname>
<given-names>M.</given-names>
</name>
<etal/>
</person-group> (<year>2024</year>). <article-title>Safety of dofetilide in stable patients and investigating traits of susceptibility to torsade de pointes</article-title>. <source>Int. J. Cardiol. Heart Vasc.</source> <volume>54</volume>, <fpage>101475</fpage>. <pub-id pub-id-type="doi">10.1016/j.ijcha.2024.101475</pub-id>
</citation>
</ref>
<ref id="B97">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Takahashi</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Miura</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Scott</surname>
<given-names>S. A.</given-names>
</name>
<name>
<surname>Niioka</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Sawada</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Pharmacokinetics of dasatinib for Philadelphia-positive acute lymphocytic leukemia with acquired T315I mutation</article-title>. <source>J. Hematol. Oncol.</source> <volume>5</volume>, <fpage>23</fpage>. <pub-id pub-id-type="doi">10.1186/1756-8722-5-23</pub-id>
</citation>
</ref>
<ref id="B98">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Teerlink</surname>
<given-names>J. R.</given-names>
</name>
<name>
<surname>Clarke</surname>
<given-names>C. P.</given-names>
</name>
<name>
<surname>Saikali</surname>
<given-names>K. G.</given-names>
</name>
<name>
<surname>Lee</surname>
<given-names>J. H.</given-names>
</name>
<name>
<surname>Chen</surname>
<given-names>M. M.</given-names>
</name>
<name>
<surname>Escandon</surname>
<given-names>R. D.</given-names>
</name>
<etal/>
</person-group> (<year>2011</year>). <article-title>Dose-dependent augmentation of cardiac systolic function with the selective cardiac myosin activator, omecamtiv mecarbil: a first-in-man study</article-title>. <source>Lancet (London, Engl.)</source> <volume>378</volume> (<issue>9792</issue>), <fpage>667</fpage>&#x2013;<lpage>675</lpage>. <pub-id pub-id-type="doi">10.1016/S0140-6736(11)61219-1</pub-id>
</citation>
</ref>
<ref id="B99">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tewey</surname>
<given-names>K. M.</given-names>
</name>
<name>
<surname>Rowe</surname>
<given-names>T. C.</given-names>
</name>
<name>
<surname>Yang</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Halligan</surname>
<given-names>B. D.</given-names>
</name>
<name>
<surname>Liu</surname>
<given-names>L. F.</given-names>
</name>
</person-group> (<year>1984</year>). <article-title>Adriamycin-induced DNA damage mediated by mammalian DNA topoisomerase II</article-title>. <source>Science</source> <volume>226</volume> (<issue>4673</issue>), <fpage>466</fpage>&#x2013;<lpage>468</lpage>. <pub-id pub-id-type="doi">10.1126/science.6093249</pub-id>
</citation>
</ref>
<ref id="B100">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tiburcy</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Hudson</surname>
<given-names>J. E.</given-names>
</name>
<name>
<surname>Balfanz</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Schlick</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Meyer</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Chang Liao</surname>
<given-names>M. L.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>Defined engineered human myocardium with advanced maturation for applications in heart failure modeling and repair</article-title>. <source>Circulation</source> <volume>135</volume> (<issue>19</issue>), <fpage>1832</fpage>&#x2013;<lpage>1847</lpage>. <pub-id pub-id-type="doi">10.1161/CIRCULATIONAHA.116.024145</pub-id>
</citation>
</ref>
<ref id="B101">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Turley</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Comley</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Houlbrook</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Nozaki</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Kikuchi</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Hickson</surname>
<given-names>I. D.</given-names>
</name>
<etal/>
</person-group> (<year>1997</year>). <article-title>The distribution and expression of the two isoforms of DNA topoisomerase II in normal and neoplastic human tissues</article-title>. <source>Br. J. Cancer</source> <volume>75</volume> (<issue>9</issue>), <fpage>1340</fpage>&#x2013;<lpage>1346</lpage>. <pub-id pub-id-type="doi">10.1038/bjc.1997.227</pub-id>
</citation>
</ref>
<ref id="B102">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Twelves</surname>
<given-names>C. J.</given-names>
</name>
<name>
<surname>Dobbs</surname>
<given-names>N. A.</given-names>
</name>
<name>
<surname>Aldhous</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Harper</surname>
<given-names>P. G.</given-names>
</name>
<name>
<surname>Rubens</surname>
<given-names>R. D.</given-names>
</name>
<name>
<surname>Richards</surname>
<given-names>M. A.</given-names>
</name>
</person-group> (<year>1991</year>). <article-title>Comparative pharmacokinetics of doxorubicin given by three different schedules with equal dose intensity in patients with breast cancer</article-title>. <source>Cancer Chemother. Pharmacol.</source> <volume>28</volume> (<issue>4</issue>), <fpage>302</fpage>&#x2013;<lpage>307</lpage>. <pub-id pub-id-type="doi">10.1007/BF00685539</pub-id>
</citation>
</ref>
<ref id="B103">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Vaiciuleviciute</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Bironaite</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Uzieliene</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Mobasheri</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Bernotiene</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Cardiovascular drugs and osteoarthritis: effects of targeting ion channels</article-title>. <source>Cells</source> <volume>10</volume> (<issue>10</issue>), <fpage>2572</fpage>. <pub-id pub-id-type="doi">10.3390/cells10102572</pub-id>
</citation>
</ref>
<ref id="B104">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Vassallo</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Trohman</surname>
<given-names>R. G.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>Prescribing amiodarone: an evidence-based review of clinical indications</article-title>. <source>JAMA</source> <volume>298</volume> (<issue>11</issue>), <fpage>1312</fpage>&#x2013;<lpage>1322</lpage>. <pub-id pub-id-type="doi">10.1001/jama.298.11.1312</pub-id>
</citation>
</ref>
<ref id="B105">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Walder</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Pallocca</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Bastos</surname>
<given-names>L. F.</given-names>
</name>
<name>
<surname>Beekhuijzen</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Busquet</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Constantino</surname>
<given-names>H.</given-names>
</name>
<etal/>
</person-group> (<year>2025</year>). <article-title>EU roadmap for phasing out animal testing for chemical safety assessments: recommendations from a multi-stakeholder roundtable</article-title>. <source>Altex</source> <volume>42</volume> (<issue>3</issue>), <fpage>435</fpage>&#x2013;<lpage>450</lpage>. <pub-id pub-id-type="doi">10.14573/altex.2503241</pub-id>
</citation>
</ref>
<ref id="B106">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Waliany</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Caswell-Jin</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Riaz</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Myall</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Zhu</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Witteles</surname>
<given-names>R. M.</given-names>
</name>
<etal/>
</person-group> (<year>2023</year>). <article-title>Pharmacovigilance analysis of heart failure associated with anti-HER2 monotherapies and combination regimens for cancer</article-title>. <source>JACC CardioOncol</source> <volume>5</volume> (<issue>1</issue>), <fpage>85</fpage>&#x2013;<lpage>98</lpage>. <pub-id pub-id-type="doi">10.1016/j.jaccao.2022.09.007</pub-id>
</citation>
</ref>
<ref id="B107">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Waring</surname>
<given-names>M. J.</given-names>
</name>
<name>
<surname>Arrowsmith</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Leach</surname>
<given-names>A. R.</given-names>
</name>
<name>
<surname>Leeson</surname>
<given-names>P. D.</given-names>
</name>
<name>
<surname>Mandrell</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Owen</surname>
<given-names>R. M.</given-names>
</name>
<etal/>
</person-group> (<year>2015</year>). <article-title>An analysis of the attrition of drug candidates from four major pharmaceutical companies</article-title>. <source>Nat. Rev. Drug Discov.</source> <volume>14</volume> (<issue>7</issue>), <fpage>475</fpage>&#x2013;<lpage>486</lpage>. <pub-id pub-id-type="doi">10.1038/nrd4609</pub-id>
</citation>
</ref>
<ref id="B108">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Way</surname>
<given-names>G. P.</given-names>
</name>
<name>
<surname>Kost-Alimova</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Shibue</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Harrington</surname>
<given-names>W. F.</given-names>
</name>
<name>
<surname>Gill</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Piccioni</surname>
<given-names>F.</given-names>
</name>
<etal/>
</person-group> (<year>2021</year>). <article-title>Predicting cell health phenotypes using image-based morphology profiling</article-title>. <source>Mol. Biol. Cell</source> <volume>32</volume> (<issue>9</issue>), <fpage>995</fpage>&#x2013;<lpage>1005</lpage>. <pub-id pub-id-type="doi">10.1091/mbc.E20-12-0784</pub-id>
</citation>
</ref>
<ref id="B109">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Won</surname>
<given-names>J.-H.</given-names>
</name>
<name>
<surname>Park</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Hong</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Son</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Yu</surname>
<given-names>J.-W.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Rotenone-induced impairment of mitochondrial electron transport chain confers a selective priming signal for NLRP3 inflammasome activation</article-title>. <source>J. Biol. Chem.</source> <volume>290</volume> (<issue>45</issue>), <fpage>27425</fpage>&#x2013;<lpage>27437</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M115.667063</pub-id>
</citation>
</ref>
<ref id="B110">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Woo</surname>
<given-names>L. A.</given-names>
</name>
<name>
<surname>Tkachenko</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Ding</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Plowright</surname>
<given-names>A. T.</given-names>
</name>
<name>
<surname>Engkvist</surname>
<given-names>O.</given-names>
</name>
<name>
<surname>Andersson</surname>
<given-names>H.</given-names>
</name>
<etal/>
</person-group> (<year>2019</year>). <article-title>High-content phenotypic assay for proliferation of human iPSC-derived cardiomyocytes identifies L-type calcium channels as targets</article-title>. <source>J. Mol. Cell. Cardiol.</source> <volume>127</volume>, <fpage>204</fpage>&#x2013;<lpage>214</lpage>. <pub-id pub-id-type="doi">10.1016/j.yjmcc.2018.12.015</pub-id>
</citation>
</ref>
<ref id="B111">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wu</surname>
<given-names>B. B.</given-names>
</name>
<name>
<surname>Leung</surname>
<given-names>K. T.</given-names>
</name>
<name>
<surname>Poon</surname>
<given-names>E. N.</given-names>
</name>
</person-group> (<year>2022</year>). <article-title>Mitochondrial-targeted therapy for doxorubicin-induced cardiotoxicity</article-title>. <source>Int. J. Mol. Sci.</source> <volume>23</volume> (<issue>3</issue>), <fpage>1912</fpage>. <pub-id pub-id-type="doi">10.3390/ijms23031912</pub-id>
</citation>
</ref>
<ref id="B112">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yamamoto</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Asakura</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Ando</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Taniguchi</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Ojima</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Uda</surname>
<given-names>T.</given-names>
</name>
<etal/>
</person-group> (<year>2016</year>). <article-title>Electrophysiological characteristics of human iPSC-derived cardiomyocytes for the assessment of drug-induced proarrhythmic potential</article-title>. <source>PLoS One</source> <volume>11</volume> (<issue>12</issue>), <fpage>e0167348</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0167348</pub-id>
</citation>
</ref>
<ref id="B113">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yang</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Ribeiro</surname>
<given-names>A. J. S.</given-names>
</name>
<name>
<surname>Pang</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Strauss</surname>
<given-names>D. G.</given-names>
</name>
</person-group> (<year>2022</year>). <article-title>Use of human iPSC-CMs in nonclinical regulatory studies for cardiac safety assessment</article-title>. <source>Toxicol. Sci.</source> <volume>190</volume> (<issue>2</issue>), <fpage>117</fpage>&#x2013;<lpage>126</lpage>. <pub-id pub-id-type="doi">10.1093/toxsci/kfac095</pub-id>
</citation>
</ref>
<ref id="B114">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yang</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Yang</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Kiskin</surname>
<given-names>F. N.</given-names>
</name>
<name>
<surname>Shen</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>J. Z.</given-names>
</name>
</person-group> (<year>2023</year>). <article-title>Recent advances in regulating the proliferation or maturation of human-induced pluripotent stem cell-derived cardiomyocytes</article-title>. <source>Stem Cell Res. Ther.</source> <volume>14</volume> (<issue>1</issue>), <fpage>228</fpage>. <pub-id pub-id-type="doi">10.1186/s13287-023-03470-w</pub-id>
</citation>
</ref>
<ref id="B115">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yu</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Chen</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Liu</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Zhou</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Bu</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2019</year>). <article-title>Action potential response of human induced-pluripotent stem cell derived cardiomyocytes to the 28 CiPA compounds: a non-core site data report of the CiPA study</article-title>. <source>J. Pharmacol. Toxicol. Methods</source> <volume>98</volume>, <fpage>106577</fpage>. <pub-id pub-id-type="doi">10.1016/j.vascn.2019.04.003</pub-id>
</citation>
</ref>
<ref id="B116">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zushin</surname>
<given-names>P. H.</given-names>
</name>
<name>
<surname>Mukherjee</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Wu</surname>
<given-names>J. C.</given-names>
</name>
</person-group> (<year>2023</year>). <article-title>FDA Modernization Act 2.0: transitioning beyond animal models with human cells, organoids, and AI/ML-based approaches</article-title>. <source>J. Clin. Invest.</source> <volume>133</volume> (<issue>21</issue>), <fpage>e175824</fpage>. <pub-id pub-id-type="doi">10.1172/jci175824</pub-id>
</citation>
</ref>
</ref-list>
</back>
</article>