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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Sustain. Food Syst.</journal-id>
<journal-title>Frontiers in Sustainable Food Systems</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Sustain. Food Syst.</abbrev-journal-title>
<issn pub-type="epub">2571-581X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fsufs.2020.00136</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Sustainable Food Systems</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Use of Plant Growth-Promoting Rhizobacteria in Maize and Sugarcane: Characteristics and Applications</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>dos Santos</surname> <given-names>Roberta Mendes</given-names></name>
<uri xlink:href="http://loop.frontiersin.org/people/994266/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Diaz</surname> <given-names>Paola Andrea Escobar</given-names></name>
<uri xlink:href="http://loop.frontiersin.org/people/1046199/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Lobo</surname> <given-names>Laiana Lana Bentes</given-names></name>
<uri xlink:href="http://loop.frontiersin.org/people/1046263/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Rigobelo</surname> <given-names>Everlon Cid</given-names></name>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x02020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/933320/overview"/>
</contrib>
</contrib-group>
<aff><institution>Agricultural and Livestock Microbiology Post Graduation Program, Department of Plant Production, School of Agricultural and Veterinarian Sciences, Sa&#x000F5; Paulo State University (UNESP), Access way Prof. Paulo Donato Castellane</institution>, <addr-line>Sa&#x000F5; Paulo</addr-line>, <country>Brazil</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Matteo Balderacchi, Independent Researcher, Piacenza, Italy</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: John A. McInroy, Auburn University, United States; Lamine Baba-Moussa, Universit&#x000E9; d&#x00027;Abomey-Calavi, Benin; Ertan Yildirim, Atat&#x000FC;rk University, Turkey</p></fn>
<corresp id="c001">&#x0002A;Correspondence: Everlon Cid Rigobelo <email>everlon.cid&#x00040;unesp.br</email></corresp>
<fn fn-type="other" id="fn001"><p>This article was submitted to Crop Biology and Sustainability, a section of the journal Frontiers in Sustainable Food Systems</p></fn>
<fn fn-type="other" id="fn002"><p>&#x02020;ORCID: Everlon Cid Rigobelo <ext-link ext-link-type="uri" xlink:href="https://orcid.org/0000-0002-9734-3338">orcid.org/0000-0002-9734-3338</ext-link></p></fn></author-notes>
<pub-date pub-type="epub">
<day>29</day>
<month>09</month>
<year>2020</year>
</pub-date>
<pub-date pub-type="collection">
<year>2020</year>
</pub-date>
<volume>4</volume>
<elocation-id>136</elocation-id>
<history>
<date date-type="received">
<day>25</day>
<month>05</month>
<year>2020</year>
</date>
<date date-type="accepted">
<day>29</day>
<month>07</month>
<year>2020</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2020 dos Santos, Diaz, Lobo and Rigobelo.</copyright-statement>
<copyright-year>2020</copyright-year>
<copyright-holder>dos Santos, Diaz, Lobo and Rigobelo</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p>Free-living bacteria that actively colonize plant roots and provide positive effects on plant development are called plant-growth promoting. Plant growth-promoting bacteria can promote plant growth and use their own metabolism to solubilize phosphates, produce hormones and fix nitrogen, and they can directly affect plant metabolism. PGPR also increase plant absorption of water and nutrients, improving root development and increasing plant enzymatic activity; moreover, PGPR can promote other microorganisms as part of a synergistic effect to improve their effects on plants, promoting plant growth or suppressing pathogens. Many studies have shown several benefits of the use of PGPR in maize and sugarcane crops. These bacteria are an excellent alternative to farmers to reduce chemical fertilization and pesticide input without promoting the environment impact and yield-reducing. The present review is an effort to elucidate the concept of rhizobacteria in the current scenario and their underlying mechanisms of plant growth promotion with recent updates. The latest paradigms of a wide range of applications of these beneficial rhizobacteria in both crops maize and sugarcane have been presented explicitly to garner broad perspectives regarding their functioning and applicability. The results from several studies have shown that the utilization of PGPR in maize and sugarcane is the great alternative to farmers face the challenge the modern agriculture.</p></abstract>
<kwd-group>
<kwd>plant-growth-promoting</kwd>
<kwd><italic>Saccharum</italic> spp.</kwd>
<kwd><italic>Zea mays</italic></kwd>
<kwd>rhizosphere</kwd>
<kwd>yield</kwd>
</kwd-group>
<counts>
<fig-count count="3"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="211"/>
<page-count count="15"/>
<word-count count="13671"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>This review focuses on plant growth-promoting rhizobacteria that are beneficial for the plant. Some beneficials do so by promoting plant growth directly, i.e., in the absence of pathogens. Others do this indirectly by protecting the plant against soil- borne diseases, most of which are caused by fungi.</p>
<p>The use of PGPR is one potential way to decrease negative environmental impact resulting from continued use of chemical fertilizers, pesticides and herbicides. This term was first defined by Kloepper and Schroth (<xref ref-type="bibr" rid="B90">1978</xref>) to describe soil bacteria that colonize the rhizosphere of plants, growing in, on or around plant tissues that stimulate plant growth by several mechanisms. Since that time, research activities aimed at understanding how these bacteria perform their positive (or negative) effect have steadily increased and many studies have been published on these microorganisms (Vessey, <xref ref-type="bibr" rid="B196">2003</xref>; Lugtenberg and Kamilova, <xref ref-type="bibr" rid="B104">2009</xref>; Perez-Montano et al., <xref ref-type="bibr" rid="B141">2014</xref>).</p>
<p>Increasing crop production to meet the demands of consumer markets and the growing world population relies on the use of a large amount of chemical fertilizers and pesticides, which are often overused in soil (Kumar et al., <xref ref-type="bibr" rid="B93">2017</xref>). The use of chemical fertilizers in crop production provides an average yield increase of approximately 50% compared to production without their use; however, chemical fertilization practices ignore the biological potential of roots or the rhizosphere by increasing nutrient mobilization and acquisition and decreasing the interactions between plants and rhizospheric microorganisms (Meena et al., <xref ref-type="bibr" rid="B114">2017</xref>). Many studies have demonstrated the abilities of plant growth-promoting microorganisms to increase plant nutritional status and reduce the use of pesticides (Aloo et al., <xref ref-type="bibr" rid="B5">2019</xref>).</p>
<p>Plant growth-promoting rhizobacteria is an excellent alternative to farmers face the new challenges of modern agriculture as serious environmental and social problems emerged as a consequence of industrialization of agriculture provoked by necessity to increase a great amount of food to the general population. Currently, it is urgent to maintain high productivity impacting the environment as little as possible (P&#x000E9;rez-Monta&#x000F1;o et al., <xref ref-type="bibr" rid="B140">2013</xref>).</p>
<p>There are two mechanisms used by PGPR to promote plant growth. Each mechanism contains several parameters related to plant growth. The direct mechanism contains the parameters production of phytohormones Cass&#x000E1;n et al. (<xref ref-type="bibr" rid="B29">2009</xref>) such as auxins (Khalid et al., <xref ref-type="bibr" rid="B86">2004b</xref>); siderophores (Yu et al., <xref ref-type="bibr" rid="B206">2019</xref>); phosphorous solubilization Krey et al. (<xref ref-type="bibr" rid="B91">2013</xref>), or nitrogen-fixing (Riggs et al., <xref ref-type="bibr" rid="B157">2001</xref>). Indirect mechanism is related to biocontrol, by mean of antagonistic activity against phytopathogenic microorganisms inducing plant systemic resistance responses, interfering in the bacterial quorum sensing (QS) systems, etc. Some reports show PGPR may use more than one of these mechanisms for accomplishing plant growth enhancement (Bashan and Holguin, <xref ref-type="bibr" rid="B15">1997</xref>; Ahmad et al., <xref ref-type="bibr" rid="B2">2016</xref>).</p>
<p>In this review we begin with a description of how bacteria live on the root, which nutrients are available, and how the bacteria colonize the root. Competitive rhizosphere colonization is crucial for many mechanisms of action of plant- beneficial bacteria. Which bacterial traits are important for root colonization when bacteria compete with each other and with other organisms. We describe various mechanisms used by specialized beneficial rhizobacteria to positively influence plant growth. These mechanisms were classified as direct mechanisms and indirect mechanisms. The direct mechanisms approached in this review were phytohormone production, biological nitrogen fixation, phosphorus solubilization, potassium solubilization. The indirect mechanisms approached were production of antibiotics, induced systemic resistance, production of siderophores, rhizoremediation, and stress control and interference with the quorum sensing system. This review brings in <xref ref-type="table" rid="T1">Tables 1</xref>, <xref ref-type="table" rid="T2">2</xref> the most important studies related to the use of these bacteria in maize and sugarcane production, respectively. Finally, this review also brings in <xref ref-type="fig" rid="F1">Figure 1</xref> that shows the benefits to plants from host-PGPR interactions, <xref ref-type="fig" rid="F2">Figure 2</xref>, direct mechanisms that benefit plant growth, and in <xref ref-type="fig" rid="F3">Figure 3</xref>, indirect mechanisms that benefit plant growth.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Bacteria specie, abilities, experiment condition, and results promoted by the application of many plant growth- promoting rhizobacteria in maize crop.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Rhizobacteria/Consortium (maize)</bold></th>
<th valign="top" align="left"><bold>Abilities</bold></th>
<th valign="top" align="left"><bold>Condition</bold></th>
<th valign="top" align="left"><bold>Results</bold></th>
<th valign="top" align="left"><bold>References</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>Lysinibacillus sphaericus</italic> (T19)</td>
<td valign="top" align="left">BNF and IAA production</td>
<td valign="top" align="left">Field</td>
<td valign="top" align="left">Increased productivity</td>
<td valign="top" align="left">Breedt et al., <xref ref-type="bibr" rid="B23">2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>A. brasilense</italic> Az39, <italic>Bradyrhizobium japonicum</italic> E109 (individual experiments and consortia)</td>
<td valign="top" align="left">Phytohormone production</td>
<td valign="top" align="left">Growth chamber</td>
<td valign="top" align="left">Increase in promoting seed germination and early seedling development (use of isolated or combined species)</td>
<td valign="top" align="left">Cass&#x000E1;n et al., <xref ref-type="bibr" rid="B29">2009</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. pumilus</italic> S1r1</td>
<td valign="top" align="left">BNF</td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Higher corncob productivity (up to 30.9%)</td>
<td valign="top" align="left">Kuan et al., <xref ref-type="bibr" rid="B92">2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>A. brasilense</italic> and <italic>P. fluorescens</italic></td>
<td valign="top" align="left">IAA production and phosphate solubilization</td>
<td valign="top" align="left">Field</td>
<td valign="top" align="left">Higher grain yield</td>
<td valign="top" align="left">Di Salvo et al., <xref ref-type="bibr" rid="B47">2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>P. fluorescens</italic> F113</td>
<td valign="top" align="left">Nutrient acquisition</td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Addition of N, K, Ca, Mg, and Mn equal to 40, 49, 60, 100, and 141%, respectively, in the shoots</td>
<td valign="top" align="left">Rocha et al., <xref ref-type="bibr" rid="B158">2019</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Enterobacter cloacae</italic></td>
<td valign="top" align="left">ACC deaminase production</td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Increases of 60, 73, 43, 69, 76, and 42%, respectively, in grain production, photosynthetic rate, stomatal conductance, chlorophyll A, total chlorophyll and carotenoids</td>
<td valign="top" align="left">Danish et al., <xref ref-type="bibr" rid="B44">2020</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. subtilis</italic> and <italic>A. brasilense</italic></td>
<td valign="top" align="left">Phosphate solubilization</td>
<td valign="top" align="left">Field</td>
<td valign="top" align="left">Higher grain yield</td>
<td valign="top" align="left">Pereira et al., <xref ref-type="bibr" rid="B138">2020</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Chryseobacterium</italic> sp. NGB-29 and <italic>Flavobacterium</italic> sp. O NGB-31</td>
<td valign="top" align="left">BNF and production of large amounts of IAA</td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Increased growth parameters</td>
<td valign="top" align="left">Youseif, <xref ref-type="bibr" rid="B205">2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Ralstonia eutropha</italic> 1C2 and <italic>Chryseobacterium humi</italic> ECP37</td>
<td valign="top" align="left">Zn bioavailability in the soil</td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Increased biomass and Zn accumulation and availability in plants</td>
<td valign="top" align="left">Moreira et al., <xref ref-type="bibr" rid="B120">2019</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Pseudomonas aurantiaca</italic> SR1</td>
<td valign="top" align="left">Production of phytohormones, antibiotics, and siderophores</td>
<td valign="top" align="left">Field</td>
<td valign="top" align="left">Increased productivity, length, and shoot and root dry weight</td>
<td valign="top" align="left">Rosas et al., <xref ref-type="bibr" rid="B162">2009</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. subtilis 320</italic></td>
<td valign="top" align="left">Phosphate solubilization and phytohormone production</td>
<td valign="top" align="left">Field</td>
<td valign="top" align="left">Increase in productivity and P in the shoots</td>
<td valign="top" align="left">Lobo et al., <xref ref-type="bibr" rid="B102">2019</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Burkholderia cepacia</italic></td>
<td valign="top" align="left">Biocontrol and phosphate solubilization</td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Increased leaf area, length, and shoot and root dry weight</td>
<td valign="top" align="left">Zhao et al., <xref ref-type="bibr" rid="B211">2014</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Pseudomonas tolaasii</italic> IEXb</td>
<td valign="top" align="left">Phosphate solubilization</td>
<td valign="top" align="left">Field</td>
<td valign="top" align="left">Increase in seedling emergence, shoot length, grain yield, 1,000-grain weight, total dry biomass, and P content in plants</td>
<td valign="top" align="left">Viruel et al., <xref ref-type="bibr" rid="B197">2014</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Pseudomonas kilonensis</italic> F113 and <italic>Pseudomonas protegens</italic> CHA0</td>
<td valign="top" align="left">Phosphate solubilization and biocontrol</td>
<td valign="top" align="left">Field</td>
<td valign="top" align="left">Increase in leaf yield, height, and length</td>
<td valign="top" align="left">Alori et al., <xref ref-type="bibr" rid="B6">2019</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Enterobacter cloacae</italic> PGLO9</td>
<td valign="top" align="left">Phosphate solubilization</td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Longer root length, shoot length, and increased shoot and root biomass</td>
<td valign="top" align="left">Verma et al., <xref ref-type="bibr" rid="B195">2018</xref></td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>Bacteria specie, abilities, experiment condition, and results promoted by the application of many plant growth- promoting rhizobacteria in sugarcane.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Rhizobacteria/Consortium (sugarcane)</bold></th>
<th valign="top" align="left"><bold>Abilities</bold></th>
<th valign="top" align="left"><bold>Condition</bold></th>
<th valign="top" align="left"><bold>Results</bold></th>
<th valign="top" align="left"><bold>References</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>A. brasilense</italic> &#x0002B; <italic>B. subtilis</italic></td>
<td valign="top" align="left">Phosphate solubilization</td>
<td valign="top" align="left">Field</td>
<td valign="top" align="left">Increased yield, dry matter, total P accumulation, and reduced fertilization by 75%</td>
<td valign="top" align="left">Rosa et al., <xref ref-type="bibr" rid="B161">2020</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. pumilus</italic></td>
<td valign="top" align="left">Production of IAA and enzymes (endoglucanases and xylanases)</td>
<td valign="top" align="left">Pot</td>
<td valign="top" align="left">Increase in dry matter and number and diameter of tillers</td>
<td valign="top" align="left">Santos et al., <xref ref-type="bibr" rid="B168">2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. subtilis</italic> (BSSC11) and <italic>Bacillus megaterium</italic> (BMSE7)</td>
<td valign="top" align="left">Phosphate solubilization and the production of siderophores, IAA, ammonia, and HCN</td>
<td valign="top" align="left">Field</td>
<td valign="top" align="left">Increase in root length, shoot length, and total dry matter</td>
<td valign="top" align="left">Chandra et al., <xref ref-type="bibr" rid="B31">2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>P. koreensis</italic> and <italic>P. entomophila</italic></td>
<td valign="top" align="left">BNF, production of phytohormones, and biocontrol capacity</td>
<td valign="top" align="left">Growth chamber</td>
<td valign="top" align="left">Improvement of plant growth and development</td>
<td valign="top" align="left">Li et al., <xref ref-type="bibr" rid="B96">2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Escherichia</italic> sp. (VRE34)</td>
<td valign="top" align="left">Antagonism to phytopathogens, IAA production, P solubilization, and BNF</td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Increase in plant height, stem diameter, and number of leaves</td>
<td valign="top" align="left">Patel et al., <xref ref-type="bibr" rid="B136">2019</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Burkholderia gladioli</italic> TNCSF 021</td>
<td valign="top" align="left">P solubilization</td>
<td valign="top" align="left">Pot</td>
<td valign="top" align="left">Increase in leaf chlorophyll, N content, and total biomass</td>
<td valign="top" align="left">Muthukumarasamy et al., <xref ref-type="bibr" rid="B125">2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Bacillus altitudinis</italic> and <italic>Bacillus velezensis</italic></td>
<td valign="top" align="left">Biological control</td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Increase in dry weight, surface area, and total root length</td>
<td valign="top" align="left">Liu et al., <xref ref-type="bibr" rid="B101">2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Bacillus xiamenensis</italic> PM14</td>
<td valign="top" align="left">Production of siderophores, IAA, amylase, pectinase, cellulase, chitinase, protease, and ACC deaminase and phosphate solubilization</td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Increase in height, fresh weight, length, and root diameter and length</td>
<td valign="top" align="left">Xia et al., <xref ref-type="bibr" rid="B204">2020</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Azotobacter</italic> sp. (AZS3), <italic>P. fluorescens</italic> (Ps5), and <italic>Bacillus</italic> sp. (Bc1)</td>
<td valign="top" align="left">Production of IAA, siderophores and hydrogen cyanide; phosphate solubilization; and antifungal activity</td>
<td valign="top" align="left">Pot</td>
<td valign="top" align="left">Increased dry weight of roots and shoots and shoot height</td>
<td valign="top" align="left">Ahmad et al., <xref ref-type="bibr" rid="B2">2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>P. fluorescens</italic></td>
<td valign="top" align="left">Antifungal activity and induced systemic resistance</td>
<td valign="top" align="left">Field</td>
<td valign="top" align="left">Improved vegetative germination and productivity</td>
<td valign="top" align="left">Viswanathan and Samiyappan, <xref ref-type="bibr" rid="B198">2002</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>A. brasilense</italic></td>
<td valign="top" align="left">Nitrogenase activity</td>
<td valign="top" align="left">Field</td>
<td valign="top" align="left">Increase in length, diameter, and Brix value</td>
<td valign="top" align="left">Lopes et al., <xref ref-type="bibr" rid="B103">2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. subtilis</italic> NH-160</td>
<td valign="top" align="left">Production of IAA, phosphate solubilization, and antifungal activity</td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Inhibition of red rot infection</td>
<td valign="top" align="left">Hassan et al., <xref ref-type="bibr" rid="B72">2010</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Azospirillum</italic> spp.</td>
<td valign="top" align="left">Tolerance to water stress</td>
<td valign="top" align="left">Pot</td>
<td valign="top" align="left">Increase in root dry matter</td>
<td valign="top" align="left">Moutia et al., <xref ref-type="bibr" rid="B122">2010</xref></td>
</tr>
</tbody>
</table>
</table-wrap>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Benefits to plants from host-PGPR interactions. These benefits have been shown to include in sees germination rate, root growth, yield, leaf area, chlorophyll content, nutrient uptake, protein content, hydraulic activity, tolerance to abiotic stress, shoot and root weights and heights, bio-control, and delayed senescence.</p></caption>
<graphic xlink:href="fsufs-04-00136-g0001.tif"/>
</fig>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Direct mechanisms that benefit plant growth from host-PGPR interactions. Biofertilization, nutrients solubilization, and phytostimulation.</p></caption>
<graphic xlink:href="fsufs-04-00136-g0002.tif"/>
</fig>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Indirect mechanisms that benefit plant growth from host-PGPR interactions. Antibiosis, siderophores, interference with the quorum sensing (QS), induced systemic resistance (ISR).</p></caption>
<graphic xlink:href="fsufs-04-00136-g0003.tif"/>
</fig></sec>
<sec id="s2">
<title>Microbes in the Rhizosphere</title>
<p>For the plant growth-promoting rhizobacteria colonize the rhizosphere two-step selection process by which the bacterial microbiota of roots is differentiated from the surrounding soil biome are necessary. One potential molecular mechanism underlying the formation of a distinctive rhizosphere microbiota from soil biomes is rhizodeposition. This process refers to intertwined plant developmental and secretory activities in the root system. Rhizodermis cells secrete a wide range of compounds, including organic acid ions, inorganic ions, phytosiderophores, sugars, vitamins, amino acids, purines, and nucleosides, and the root cap produces polysaccharide mucilage (Dakora and Phillips, <xref ref-type="bibr" rid="B43">2002</xref>). Rhizodeposition appears to fuel an initial substrate-driven community shift in the rhizosphere, which converges with host genotype&#x02013;dependent finetuning of microbiota profiles in the selection of root endophyte assemblages (Bulgarelli et al., <xref ref-type="bibr" rid="B24">2013</xref>). To exert their beneficial effects, bacteria usually must colonize the root surface efficiently (Lugtenberg and Kamilova, <xref ref-type="bibr" rid="B104">2009</xref>). The substrate-driven selection also underlies the establishment of phyllosphere communities but takes place solely at the immediate leaf surface. Both the leaf and root microbiota contain bacteria that provide indirect pathogen protection, but root microbiota members appear to serve additional host functions through the acquisition of nutrients from the soil for plant growth. Thus, the plant microbiota emerges as a fundamental trait that includes mutualism enabled through diverse biochemical mechanisms, as revealed by studies on plant growth&#x02013;promoting and plant health&#x02013;promoting bacteria (Bulgarelli et al., <xref ref-type="bibr" rid="B24">2013</xref>).</p></sec>
<sec id="s3">
<title>Mechanisms Used by PGPR</title>
<sec>
<title>Direct Mechanisms</title>
<p>The direct action of plant growth-promoting microorganisms involves soil improvements and the production of substances needed for plant growth, which improves fertility by mobilizing soil minerals (Naik et al., <xref ref-type="bibr" rid="B126">2019</xref>). These improvements include the supply of growth regulators and essential minerals such as potassium, phosphorous and (Tabassum et al., <xref ref-type="bibr" rid="B189">2017</xref>).</p></sec>
<sec>
<title>Phytohormone Production</title>
<p>Phytohormones are responsible for plant growth development and allow plants to tolerate different stress conditions (Shaterian et al., <xref ref-type="bibr" rid="B176">2005</xref>). Some rhizobacteria are able to produce phytohormones, including cytokinins, auxins, gibberellins, ethylene, and abscisic acid (ABA), which play a role in different growth processes in plants, including cell multiplication, which results in increased cell and root expansion (Glick, <xref ref-type="bibr" rid="B60">2014</xref>; Kaur et al., <xref ref-type="bibr" rid="B83">2016</xref>). However, the production of ABA by rhizobacteria is considered an indirect way of promoting plant growth (Belimov et al., <xref ref-type="bibr" rid="B17">2014</xref>).</p></sec>
<sec>
<title>Auxins</title>
<p>Auxins influence many aspects of plant development (Halliday et al., <xref ref-type="bibr" rid="B71">2009</xref>; Grossmann, <xref ref-type="bibr" rid="B66">2010</xref>). The most essential (and well-known) is indole-3-acetic acid (IAA), which is produced by different microorganisms and this hormone, in plants, plays an essential role in cell division, fruit development and leaves senescence (McSteen, <xref ref-type="bibr" rid="B113">2010</xref>). IAA stimulates the development of many parts of the plants such as roots, leaves, and flowers (Phillips et al., <xref ref-type="bibr" rid="B142">2011</xref>). In dicotyledons, IAA induces the formation of lateral roots, while in monocotyledons, it induces the formation of adventitious roots (McSteen, <xref ref-type="bibr" rid="B113">2010</xref>).</p>
<p>Plant development is affected by IAA in both favorable and harmful ways and many bacteria have the ability to synthesize IAA, including beneficial bacteria and phytopathogens (Duca et al., <xref ref-type="bibr" rid="B51">2014</xref>). More than 80% of bacteria isolated from the rhizosphere are IAA producer (Patten and Glick, <xref ref-type="bibr" rid="B137">1996</xref>; Khalid et al., <xref ref-type="bibr" rid="B85">2004a</xref>). IAA is responsible by part of the communication and signaling system between plants and rhizospheric bacteria (Spaepen et al., <xref ref-type="bibr" rid="B184">2007</xref>).</p>
<p>The tryptophan is the main precursor for the synthesis of IAA and the addition of this amino acid to culture media results in increased production in all cases (Spaepen et al., <xref ref-type="bibr" rid="B184">2007</xref>). Tryptophan biosynthesis starts from metabolic nodes in a five-step reaction encoded by <italic>trp</italic> genes (Merino et al., <xref ref-type="bibr" rid="B117">2008</xref>).</p>
<p>The pathways of tryptophan-dependent include indole-3-acetamide, indole-3-pyruvate, indole-3-acetonitrile pathways and tryptamine (Spaepen et al., <xref ref-type="bibr" rid="B184">2007</xref>), although some intermediaries may differ most pathways show similarity to those described in plants (Patten and Glick, <xref ref-type="bibr" rid="B137">1996</xref>; Woodward and Bartel, <xref ref-type="bibr" rid="B203">2005</xref>). IAA synthesis pathways have been identified using several biochemical and genetic methods; however, a small set of genes and enzymes involved in these pathways have been characterized (Spaepen and Vanderleyden, <xref ref-type="bibr" rid="B183">2011</xref>).</p>
<p>The interaction between IAA concentration and plant growth correlation is not linear, and plants should have optimal levels of endogenous IAA for optimal development (Duca et al., <xref ref-type="bibr" rid="B51">2014</xref>). Excessive amounts of IAA can promote harmful effects on plants, decreasing root growth (Duca et al., <xref ref-type="bibr" rid="B51">2014</xref>). Therefore, to stimulate plant growth using IAA it must be carefully regulated to avoid inhibitory effects caused by overdosing (Duca et al., <xref ref-type="bibr" rid="B51">2014</xref>). In this context, plants have many mechanisms of neutralization to control excess IAA, such as amino acids production (Sitbon et al., <xref ref-type="bibr" rid="B180">1992</xref>). However, plants are not always able to carry out neutralization and are sometimes harmed by excess IAA (Duca et al., <xref ref-type="bibr" rid="B51">2014</xref>).</p>
<p><italic>Aeromonas punctata</italic> (Iqbal and Hasnain, <xref ref-type="bibr" rid="B77">2013</xref>), <italic>Azospirillum brasilense</italic> (Camilios-Neto et al., <xref ref-type="bibr" rid="B28">2014</xref>), <italic>Bacillus subtilis</italic> (Tahir et al., <xref ref-type="bibr" rid="B190">2017</xref>), and <italic>Burkholderia phytofirmans</italic> (Poupin et al., <xref ref-type="bibr" rid="B148">2016</xref>) are some bacterial species that efficiently synthesize IAA.</p></sec>
<sec>
<title>Cytokinins</title>
<p>Cytokinins are responsible for the formation of shoots, inhibition of root elongation, and the improvement of cell division and root development; cytokinins are also a type of growth regulator (Porcel et al., <xref ref-type="bibr" rid="B146">2014</xref>; Jha and Saraf, <xref ref-type="bibr" rid="B80">2015</xref>). In particular, they are mandatory for the progression of the cell cycle (Schaller et al., <xref ref-type="bibr" rid="B170">2015</xref>). Furthermore, the balance between auxins and cytokinins determines the function of the meristem, the architecture of the root system, the formation of lateral organs of shoots and the development of reproductive organs (Schaller et al., <xref ref-type="bibr" rid="B170">2015</xref>). Cytokinins can regulate chloroplast biogenesis and chlorophyll biosynthesis (Cortleven and Schmulling, <xref ref-type="bibr" rid="B40">2015</xref>), and they are related to development of plant resistance to abiotic stressors and biotic (Grosskinsky et al., <xref ref-type="bibr" rid="B65">2011</xref>; O&#x00027;Brien and Benkova, <xref ref-type="bibr" rid="B128">2013</xref>).</p>
<p>Rhizobacteria can produce several types of cytokines, of which zeatin and kinetin are the most abundant (O&#x00027;Brien and Benkova, <xref ref-type="bibr" rid="B128">2013</xref>). Rhizobacteria are able to synthesize zeatin in two different ways: directly and indirectly. The direct pathway involves the synthesis of dimethylalyl diphosphate and isopentenyl adenosine monophosphate, while the indirect pathway involves <italic>cis</italic>-zeatin that contains tRNA to release cytokinins (Tabassum et al., <xref ref-type="bibr" rid="B189">2017</xref>).</p>
<p>Several <italic>Paenibacillus polymyxa, Azotobacter</italic> species., <italic>Rhizobium</italic> species., <italic>B. subtilis, Rhodospirillum rubrum, Pseudomonas fluorescens, Pantoea agglomerans</italic>, strains are capable of producing cytokines (de Salamone et al., <xref ref-type="bibr" rid="B45">2001</xref>; Glick, <xref ref-type="bibr" rid="B59">2012</xref>).</p></sec>
<sec>
<title>Gibberellins</title>
<p>Gibberellins are another essential class of phytohormones released by rhizobacteria; these compounds are responsible for different processes in higher plants, such as seed germination, stem elongation and fruiting, the flowering process (Saleem et al., <xref ref-type="bibr" rid="B165">2015</xref>). Gibberellins positively regulate cell division and elongation, stimulating the growth of the hypocotyl and stem, and they have a positive effect on root and leaf meristem size (Mart&#x000ED;nez et al., <xref ref-type="bibr" rid="B110">2018</xref>). Gibberellin can promote xylem increase and shoot growth and can also decrease root growth (Guo et al., <xref ref-type="bibr" rid="B67">2015</xref>; Wang et al., <xref ref-type="bibr" rid="B199">2015</xref>).</p>
<p>Studies have shown that some plants with gibberellin-producing bacteria in their rhizospheres exhibit better growth rates (Poupin et al., <xref ref-type="bibr" rid="B149">2013</xref>; Vacheron et al., <xref ref-type="bibr" rid="B191">2013</xref>). Some gibberellin-producing bacterial species include <italic>Bacillus amyloliquefaciens</italic> (Shahzad et al., <xref ref-type="bibr" rid="B173">2016</xref>), <italic>Enterococcus faecium</italic> (Wang et al., <xref ref-type="bibr" rid="B199">2015</xref>), <italic>Sphingomonas</italic> spp. (Khan et al., <xref ref-type="bibr" rid="B87">2014</xref>), and <italic>Bacillus pumilus</italic> (Joo et al., <xref ref-type="bibr" rid="B81">2004</xref>).</p></sec>
<sec>
<title>Ethylene</title>
<p>At low concentrations, ethylene has been proven to be potentially active in fruit and leaf maturation, seed germination, leaf senescence, flower wilting, flower initiation, root elongation and branching, nodule formation, and leaf abscission (Reid, <xref ref-type="bibr" rid="B155">1988</xref>). At relatively high concentrations, ethylene can be toxic to plants, causing defoliation, root growth inhibition and premature senescence (Vacheron et al., <xref ref-type="bibr" rid="B191">2013</xref>). When plants experience various stresses, such as infection, flooding, drought, and even the presence of potentially toxic metals, they produce ethylene precursors, that is, 1-aminocyclopropane-1-carboxylate (ACC) (Reid, <xref ref-type="bibr" rid="B155">1988</xref>; Li et al., <xref ref-type="bibr" rid="B97">2005</xref>; Liu et al., <xref ref-type="bibr" rid="B100">2013</xref>).</p>
<p>ACC deaminase (ACCD) is an enzyme synthesized by some rhizobacteria; this enzyme can benefit plants due to its action in reducing ACC levels, transform it into ammonia and &#x003B1;-ketobutyrate (Belimov et al., <xref ref-type="bibr" rid="B18">2001</xref>). This breakage allows to regulate the adverse effects of excess ethylene, reducing its levels. Therefore, rhizobacteria capable of producing ACCD are beneficial for plants growing under stress conditions, such as high salinity (Mayak et al., <xref ref-type="bibr" rid="B112">2004</xref>) drought (Sandhya et al., <xref ref-type="bibr" rid="B166">2010</xref>), and the presence of potentially toxic metals (Belimov et al., <xref ref-type="bibr" rid="B18">2001</xref>), regulating plant ACC levels and reducing the levels of ethylene to non-toxic levels.</p>
<p><italic>Azotobacter</italic> spp. (Dubey et al., <xref ref-type="bibr" rid="B50">2012</xref>; Farajzadeh et al., <xref ref-type="bibr" rid="B53">2012</xref>), <italic>Bacillus</italic> spp. (Belimov et al., <xref ref-type="bibr" rid="B18">2001</xref>), and <italic>Pseudomonas</italic> spp. (Sandhya et al., <xref ref-type="bibr" rid="B166">2010</xref>; Kamran et al., <xref ref-type="bibr" rid="B82">2016</xref>) are several species known for their production of ACCD.</p></sec>
<sec>
<title>Abscisic Acid</title>
<p>Abscisic acid (ABA) is a phytohormone related in mediating stomatal opening (Mansfield et al., <xref ref-type="bibr" rid="B109">1990</xref>; Maksimov et al., <xref ref-type="bibr" rid="B108">2011</xref>) and also various plant aspects including development and growth in the absence of stress (Cheng et al., <xref ref-type="bibr" rid="B33">2002</xref>). Abscisic acid is a molecule produced by plants, higher fungi, algae, and bacteria (Zeevaart, <xref ref-type="bibr" rid="B207">1999</xref>).</p>
<p>Water stress stimulates high levels of ABA biosynthesis in plants, which causes partial stomatal closure as an adaptive response to conserve water (Dodd, <xref ref-type="bibr" rid="B48">2007</xref>). ABA can also affect the inhibition of seed germination, the of induction of plant senescence and the abscission of fruits and leaves (Munemasa et al., <xref ref-type="bibr" rid="B123">2015</xref>; Sah et al., <xref ref-type="bibr" rid="B164">2016</xref>).</p>
<p>ABA has the abilities to reduce plant growth, even though a certain amount of ABA is required for growth, since this hormone regulates stomatal opening and, therefore, CO<sub>2</sub> absorption and loss of water (Pospisilova, <xref ref-type="bibr" rid="B147">2003</xref>). Some PGPR can reduce ABA levels in host plants and indirectly increase plant growth (Belimov et al., <xref ref-type="bibr" rid="B17">2014</xref>); these positive effects depend on endogenous ABA levels in the host plant (Vacheron et al., <xref ref-type="bibr" rid="B192">2015</xref>).</p>
<p>Many rhizobacteria produce ABA in culture media and mediate the ABA status of plants (Dodd et al., <xref ref-type="bibr" rid="B49">2010</xref>). <italic>Achromobacter xylosoxidans</italic> (Forchetti et al., <xref ref-type="bibr" rid="B54">2007</xref>; Sgroy et al., <xref ref-type="bibr" rid="B172">2009</xref>), <italic>A. brasilense</italic> (Cohen et al., <xref ref-type="bibr" rid="B36">2009</xref>), <italic>Bacillus licheniformis, B. subtilis, Brevibacterium halotolerans</italic>, and <italic>Pseudomonas putida</italic> (Sgroy et al., <xref ref-type="bibr" rid="B172">2009</xref>) are some of these rhizobacteria.</p></sec>
<sec>
<title>Biological Nitrogen Fixation</title>
<p>Nitrogen (N) is the most limiting nutrient for plant development and can be assimilated from the soil in the form of ammonia, nitrate and nitrite (Gopalakrishnan et al., <xref ref-type="bibr" rid="B61">2017</xref>). These N forms are not abundant in most soils, and chemical N fertilizer used in agriculture is often lost because of rain or by mineral leaching of nitrogen fertilizer (Perez-Montano et al., <xref ref-type="bibr" rid="B141">2014</xref>).</p>
<p>Under these circumstances, bacteria play a fundamental role because some bacteria can perform biological nitrogen fixation (BNF) and N-fixing microorganisms are classified into two groups: symbiotic microorganisms and free-living microorganisms (Gopalakrishnan et al., <xref ref-type="bibr" rid="B61">2017</xref>). BNF is carried out by a specific gene product called <italic>nif</italic>, which, together with other structural genes, participates in protein iron activation, electron transfer biosynthesis of the molybdenum iron cofactor and many other regulatory processes required for enzyme synthesis and activity (Reed et al., <xref ref-type="bibr" rid="B154">2011</xref>).</p>
<p>Bacteria that perform symbiosis, such as <italic>Rhizobium</italic> and <italic>Bradyrhizobium</italic>, act by forming nodules on the roots of plant species such as soybean, pea, peanut, and alfalfa, converting N<sub>2</sub> into ammonia, which can be used by the plant as a source of N (Murray, <xref ref-type="bibr" rid="B124">2011</xref>).</p>
<p>Inside plant cells, rhizobia undergo a differentiation process that generates the specialized form for N fixation&#x02014;the bacteroid (Olanrewaju et al., <xref ref-type="bibr" rid="B129">2017</xref>). One or more bacteroids then become surrounded by parts of the plant cell membrane to form a so-called symbiosome (Madigan and Martinko, <xref ref-type="bibr" rid="B106">2006</xref>). When the symbiosome is formed do the bacteroids convert atmospheric N through the enzyme nitrogenase into ammonia, in return, the plant provides organic acids (for bacteroids to produce energy) and provides an appropriate microenvironment for the action of nitrogenase, thus establishing a symbiotic relationship with bacteria (Madigan and Martinko, <xref ref-type="bibr" rid="B106">2006</xref>; Olanrewaju et al., <xref ref-type="bibr" rid="B129">2017</xref>).</p>
<p>Free-living bacteria are able to interact with roots; they live close to them so that the nitrogen fixed by these bacteria can be easily absorbed by plants and so that they the bacteria feed on root exudates (amino acids, peptides, proteins, enzymes, vitamins, and hormones) (Tabassum et al., <xref ref-type="bibr" rid="B189">2017</xref>).</p>
<p>Some examples of free-living N-fixing bacteria include <italic>Azotobacter, Paenibacillus, Burkholderia, Bacillus</italic> and <italic>Azospirillum, Herbaspirillum</italic> (Huang et al., <xref ref-type="bibr" rid="B76">2012</xref>; Anand et al., <xref ref-type="bibr" rid="B8">2013</xref>; Angus et al., <xref ref-type="bibr" rid="B9">2013</xref>; Habibi et al., <xref ref-type="bibr" rid="B70">2014</xref>; Geddes et al., <xref ref-type="bibr" rid="B58">2015</xref>; Goswami et al., <xref ref-type="bibr" rid="B63">2016</xref>).</p></sec>
<sec>
<title>Phosphorus Solubilization</title>
<p>Phosphorus (P) is another essential nutrient for plants and plays an important role in nearly all major metabolic processes, including, signal transduction, energy transfer, respiration, photosynthesis, macromolecular biosynthesis (Anand et al., <xref ref-type="bibr" rid="B7">2016</xref>). Although the P reserve in soils is large, it is present mainly in the form of insoluble compounds that cannot be absorbed by plants, limiting their growth. Plants absorb phosphate only in the form of monobasic (H<sub>2</sub><inline-formula><mml:math id="M1"><mml:msup><mml:mrow><mml:msub><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula>) and dibasic ions (<inline-formula><mml:math id="M2"><mml:msubsup><mml:mrow><mml:mtext>HPO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msubsup></mml:math></inline-formula>) (Perez-Montano et al., <xref ref-type="bibr" rid="B141">2014</xref>).</p>
<p>Microorganisms play an important role in P transformation in the soil, including the P solubilization required for plant growth (Rodriguez and Fraga, <xref ref-type="bibr" rid="B159">1999</xref>).</p>
<p>The ability to solubilize and mineralize P by phosphate-solubilizing bacteria is an important characteristic (Oteino et al., <xref ref-type="bibr" rid="B132">2015</xref>). Several low-molecular-weight organic acids synthesized by various soil bacteria are capable of solubilizing inorganic P (Sharma et al., <xref ref-type="bibr" rid="B175">2013</xref>). Members of the genera <italic>Arthrobacter, Bacillus, Beijerinckia, Burkholderia, Enterobacter, Microbacterium, Pseudomonas, Erwinia, Rhizobium, Mesorhizobium, Flavobacterium, Rhodococcus</italic>, and <italic>Serratia</italic> have the ability to solubilize phosphates (Oteino et al., <xref ref-type="bibr" rid="B132">2015</xref>).</p>
<p>The phosphate solubilization is based on the secretion of organic acids by microorganisms due to sugar metabolism and organisms living in the rhizosphere use sugars from root exudates (Goswami et al., <xref ref-type="bibr" rid="B62">2014</xref>). The acids released by microorganisms act as good chelators of divalent Ca<sup>2&#x0002B;</sup> ions that follow the release of phosphates from insoluble compounds. Many phosphate-solubilizing microorganisms lower the pH of media by secreting organic acids such as acetic acid, lactic acid, malic acid, succinic acid, tartaric acid, gluconic acid, 2-ketogluconic acid, oxalic acid and citric acid (Rodriguez and Fraga, <xref ref-type="bibr" rid="B159">1999</xref>; Patel et al., <xref ref-type="bibr" rid="B135">2015</xref>).</p>
<p>Organic P solubilization is also called organic P mineralization and plays an essential role in the phosphorus cycling of an agricultural system (Khan et al., <xref ref-type="bibr" rid="B88">2007</xref>). P can be released from organic compounds in the soil by enzymes such as non-specific acid phosphatases, phytases, phosphonatases and C-P lyases (Sharma et al., <xref ref-type="bibr" rid="B175">2013</xref>).</p></sec>
<sec>
<title>Potassium Solubilization</title>
<p>Potassium (K) is the third most important macronutrient required for plant growth and this element plays a vital role in various plant physiological and metabolic processes (Zhao et al., <xref ref-type="bibr" rid="B210">2001</xref>), including photosynthesis (Wang et al., <xref ref-type="bibr" rid="B200">2012</xref>), plant growth, metabolism, assimilation, sugar accumulation, and plant growth and development (Sparks and Huang, <xref ref-type="bibr" rid="B185">1985</xref>). Since more than 90% of K is present in the form of insoluble minerals of rock and silicate, the soluble K concentration is generally very low in soils (Parmar and Sindhu, <xref ref-type="bibr" rid="B134">2013</xref>).</p>
<p>K-solubilizing bacteria, such as <italic>Acidothiobacillus</italic> spp., <italic>Bacillus edaphicus, Bacillus mucilaginosus, Pseudomonas</italic> spp., <italic>Burkholderia</italic> spp., and <italic>Paenibacillus</italic> spp., have been reported for their action of solubilizing K into assimilable forms from K minerals in the soil (Liu et al., <xref ref-type="bibr" rid="B99">2012</xref>).</p>
<p>As in the case of P solubilization, the main mechanism of K solubilization is the production of organic acids, inorganic acids and protons (the acidolysis mechanism) (Sheng et al., <xref ref-type="bibr" rid="B177">2008</xref>; Parmar and Sindhu, <xref ref-type="bibr" rid="B134">2013</xref>; Maurya et al., <xref ref-type="bibr" rid="B111">2014</xref>; Meena et al., <xref ref-type="bibr" rid="B116">2015</xref>), which are capable of converting insoluble K (mica, muscovite, and feldspar biotite) into soluble forms of K that are easily absorbed by plants (Hu et al., <xref ref-type="bibr" rid="B75">2006</xref>; Mo and Lian, <xref ref-type="bibr" rid="B119">2011</xref>).</p>
<p>Several organic acids involved in the solubilization of insoluble K, tartaric acid, succinic acid, &#x003B1;-ketogluconic acid, citric acid, and oxalic acid are the most important ones released by K-solubilizing bacteria (Meena et al., <xref ref-type="bibr" rid="B115">2014</xref>).</p></sec>
<sec>
<title>Indirect Mechanisms</title>
<p>The indirect action of microorganisms to promote plant growth includes the production of biocontrol agents that inactivate or kill pathogens, providing a healthy environment for plants (Naik et al., <xref ref-type="bibr" rid="B126">2019</xref>).</p>
<p>Antibiosis, competition, production of lytic enzymes (chitinases and glucanases) with the ability to hydrolyze fungal cell walls are considered indirect mechanisms of growth promotion (Bhattacharyya and Jha, <xref ref-type="bibr" rid="B21">2012</xref>). Bacteria can also indirectly improve plant growth by suppressing pathogens and increasing plant innate immunity against pathogens (Tabassum et al., <xref ref-type="bibr" rid="B189">2017</xref>).</p></sec>
<sec>
<title>Production of Antibiotics</title>
<p>Antibiotics are low-molecular-weight toxins produced by the bacterial community are able to eliminate or reduce the growth of other microorganisms (Bakker et al., <xref ref-type="bibr" rid="B13">2013</xref>). Both antibiotics and toxins have been identified as being produced by certain rhizospheric bacteria (Nakkeeran et al., <xref ref-type="bibr" rid="B127">2013</xref>). These include amphysines, phenazines, 2-4-diacetylfloroglucinol, pioluteorin, pyrrolnitrin, hydrogen cyanide (HCN), oomycins, polymyxin, circulin, colistin, tensin, tropolone, and cyclic lipopeptides (Maksimov et al., <xref ref-type="bibr" rid="B108">2011</xref>; Pandya and Saraf, <xref ref-type="bibr" rid="B133">2014</xref>; Wani and Khan, <xref ref-type="bibr" rid="B201">2014</xref>; Sherathia et al., <xref ref-type="bibr" rid="B178">2016</xref>).</p>
<p>Bacteria can produce only a single antibiotic substance, while others can secrete several substances (Reimer and Bode, <xref ref-type="bibr" rid="B156">2014</xref>; Majed et al., <xref ref-type="bibr" rid="B107">2016</xref>). The availability of nutrients and environmental stimuli within proximity strongly affect the synthesis of antibiotics (Choudhary et al., <xref ref-type="bibr" rid="B35">2007</xref>).</p>
<p>Rhizobacteria of the genus <italic>Bacillus</italic> are the most important for the production of antibiotics (Jayaprakashvel and Mathivanan, <xref ref-type="bibr" rid="B79">2011</xref>). <italic>B. amyloliquefaciens</italic> and <italic>B. subtilis</italic> are described as producers of a wide variety of antibacterial and antifungal antibiotics, including subtilin, bacillisin, and emicobacillin (Leclere et al., <xref ref-type="bibr" rid="B94">2005</xref>; Chang et al., <xref ref-type="bibr" rid="B32">2007</xref>).</p></sec>
<sec>
<title>Induced Systemic Resistance (ISR)</title>
<p>ISR is described as an enhanced defensive capability of plants in response to various pathogens induced by beneficial microorganisms present in the rhizosphere (Conrath et al., <xref ref-type="bibr" rid="B39">2015</xref>), a phenomenon in which the interaction of some microorganisms with roots results in plant resistance to some pathogenic bacteria, viruses, and fungi (Lugtenberg and Kamilova, <xref ref-type="bibr" rid="B104">2009</xref>). ISR can also be triggered by specific environmental stimuli that lead to the upregulation of plants&#x00027; innate defenses against biotic challenge and this heightened state of alert allows plants to respond faster and stronger against subsequent attack by pathogens (Van Loon, <xref ref-type="bibr" rid="B193">1997</xref>).</p>
<p>ISR is stimulated by non-pathogenic microorganisms; ISR begins in the roots and extends to the shoots (Solano et al., <xref ref-type="bibr" rid="B181">2008</xref>), initiates the defense mechanisms of plants and protects unexposed parts of plants against future pathogenic attacks by microorganisms and insects. This defense response depends on the signaling of ethylene and jasmonic acid in the plant (van Loon, <xref ref-type="bibr" rid="B194">2007</xref>; Pieterse et al., <xref ref-type="bibr" rid="B143">2012</xref>).</p>
<p>ISR has been reported to be one of the mechanisms by which PGPR can reduce the occurrence of some plant diseases, modulating the physical and biochemical properties of host plants and consequently promoting plant growth (Pieterse et al., <xref ref-type="bibr" rid="B145">2014</xref>).</p>
<p>Some of the defense mechanisms produced via ISR in plants include reinforcement of cell walls (Ahn et al., <xref ref-type="bibr" rid="B3">2007</xref>), production of secondary metabolites (Choudhary et al., <xref ref-type="bibr" rid="B35">2007</xref>) and accumulation of defense-related enzymes, such as chitinases, glucanases, peroxidase, phenylalanine ammonia-lyase and polyphenol oxidase (Bhattacharyya and Jha, <xref ref-type="bibr" rid="B21">2012</xref>).</p>
<p><italic>P. fluorescens</italic> (Pieterse et al., <xref ref-type="bibr" rid="B144">1996</xref>), <italic>Burkholderia phytofirmans</italic> (Compant et al., <xref ref-type="bibr" rid="B37">2005</xref>), <italic>B. pumilus</italic> (Benhamou et al., <xref ref-type="bibr" rid="B19">1996</xref>), <italic>Bacillus cereus</italic> (Conn et al., <xref ref-type="bibr" rid="B38">2008</xref>), <italic>Rhizobium leguminosarum, P. putida</italic> and <italic>Serratia marcescens</italic> (Bhattacharyya and Jha, <xref ref-type="bibr" rid="B21">2012</xref>) are examples of rhizobacteria that undergo ISR.</p></sec>
<sec>
<title>Production of Siderophores</title>
<p>Iron, which is one of the most abundant elements on Earth, is not available for direct assimilation by plants and microorganisms because, in nature, it occurs mainly as Fe<sup>3&#x0002B;</sup> and is generally present in the form of insoluble hydroxides and oxy-hydroxides (Rajkumar et al., <xref ref-type="bibr" rid="B153">2010</xref>).</p>
<p>To obtain iron for their growth and development, some bacteria synthesize low-molecular-weight iron-chelating molecules called siderophores (Shaikh and Sayyed, <xref ref-type="bibr" rid="B174">2015</xref>; Mhlongo et al., <xref ref-type="bibr" rid="B118">2018</xref>). Siderophore-producing bacteria can stimulate plant growth directly, improving plant Fe nutrition, or indirectly, inhibiting the activity of plant pathogens in the rhizosphere, which in turn limits their Fe availability (Ma et al., <xref ref-type="bibr" rid="B105">2011</xref>).</p>
<p>Pathogen suppression caused by the production of siderophores occurs by restricting the survival of pathogens by inhibiting iron nutrition by chelating available iron (Chaiharn et al., <xref ref-type="bibr" rid="B30">2009</xref>). In other words, solubilization and the competitive acquisition of iron under limiting conditions reduces the availability of iron to other soil inhabitants, subsequently limiting their growth (Haas and Defago, <xref ref-type="bibr" rid="B69">2005</xref>).</p>
<p>In addition to iron, there is evidence indicating that siderophores form stable compounds with other potentially toxic metals, such as Al, Cd, Cu, Pb, and Zn (Gururani et al., <xref ref-type="bibr" rid="B68">2013</xref>). This phenomenon is advantageous for alleviating plant stress caused by potentially toxic metals present in polluted soils Ahemad and Kibret (<xref ref-type="bibr" rid="B1">2014</xref>) and is not solely due to the increased availability of mineral nutrients for plants (Babu et al., <xref ref-type="bibr" rid="B10">2013</xref>).</p>
<p>Bacterial siderophores can be classified into four main classes based on the type of ligand and basic characteristics of the functional groups associated with iron. The main classes include catecholates, carboxylate, and hydroxamates (Crowley, <xref ref-type="bibr" rid="B42">2006</xref>).</p>
<p>Several bacterial species are capable of producing siderophores, including, <italic>Azospirillum</italic> (Banik et al., <xref ref-type="bibr" rid="B14">2016</xref>), <italic>Dickeya</italic> (Sandy and Butler, <xref ref-type="bibr" rid="B167">2011</xref>), <italic>Klebsiella</italic> (Zhang et al., <xref ref-type="bibr" rid="B208">2017</xref>; Bailey et al., <xref ref-type="bibr" rid="B12">2018</xref>), <italic>Nocardia</italic> (Hoshino et al., <xref ref-type="bibr" rid="B74">2011</xref>; Soutar and Stavrinides, <xref ref-type="bibr" rid="B182">2018</xref>), <italic>Pantoea</italic> (Burbank et al., <xref ref-type="bibr" rid="B25">2015</xref>), <italic>Pseudomonas</italic> (Baune et al., <xref ref-type="bibr" rid="B16">2017</xref>; Deori et al., <xref ref-type="bibr" rid="B46">2018</xref>; Pourbabaee et al., <xref ref-type="bibr" rid="B150">2018</xref>), <italic>Azotobacter</italic> (Romero-Perdomo et al., <xref ref-type="bibr" rid="B160">2017</xref>), <italic>Paenibacillus</italic> (Liu et al., <xref ref-type="bibr" rid="B98">2017</xref>), <italic>Bacillus</italic> (Kesaulya et al., <xref ref-type="bibr" rid="B84">2018</xref>; Pourbabaee et al., <xref ref-type="bibr" rid="B150">2018</xref>), <italic>Serratia</italic> (Lee et al., <xref ref-type="bibr" rid="B95">2017</xref>) and <italic>Streptomyces</italic> (Schutze et al., <xref ref-type="bibr" rid="B171">2015</xref>; G&#x000E1;ll et al., <xref ref-type="bibr" rid="B56">2016</xref>; Goudjal et al., <xref ref-type="bibr" rid="B64">2016</xref>).</p></sec>
<sec>
<title>Rhizoremediation and Stress Control</title>
<p>Plants are often exposed to various environmental stresses, and plant growth is sometimes inhibited by a large number of biotic (insects, bacteria, fungi, and viruses) and abiotic (radiation, salinity, temperature, flood, drought, and contaminants,) stresses, resulting in highly negative impacts on survival and plant biomass (Islam et al., <xref ref-type="bibr" rid="B78">2016</xref>).</p>
<p>Phytoremediation uses plants and microorganisms to remove, destroy or scavenge toxic metals from contaminated environments in an efficient and economical way (Ma et al., <xref ref-type="bibr" rid="B105">2011</xref>).</p>
<p>Most potential metals are toxic to plants, but bacteria are capable of neutralizing metal toxicity, linking it to negatively charged functional groups throughout the cell wall, which provides interactions with positive ions, in particular metal ions&#x02014;a phenomenon called metal biosorption (Syed and Chinthala, <xref ref-type="bibr" rid="B187">2015</xref>). Microbial species with considerable resistance to metals showed immobilization of toxic metals or reducing its concentration when added to contaminated soils by reducing their toxicity to the plant or crop (Wani and Khan, <xref ref-type="bibr" rid="B201">2014</xref>).</p></sec>
<sec>
<title>Interference With the Quorum Sensing System</title>
<p>Many bacteria rely on chemical communication to recognize the environment and retrieve information about population density. Consequently, multiple molecules are released, which synchronize the expression of genes, coordinate behavior through a process called quorum sensing (QS) and determine the relationships with eukaryotic species (Ortiz-Castro and Lopez-Bucio, <xref ref-type="bibr" rid="B131">2019</xref>). QS is considered a social trait of bacteria (Whiteley et al., <xref ref-type="bibr" rid="B202">2017</xref>).</p>
<p>Communication between cells is mediated by small molecules of diffusible signals called self-inducers (Fuqua et al., <xref ref-type="bibr" rid="B55">1994</xref>). Generally, signaling mediated by self-inducers occurs at high population densities because microorganisms act in communities where there are advantages for the entire population of cells, simulating a multicellular organism (Ganin et al., <xref ref-type="bibr" rid="B57">2009</xref>; Bai and Rai, <xref ref-type="bibr" rid="B11">2011</xref>).</p>
<p>While N-acyl-hemoserine-lactones (AHLs) and occasionally 4-hydroxy-2-alkylquinolones (HAQs) are often found in gram-negative bacteria, gram-positive bacteria mainly use cyclic oligopeptides. AHLs are the most common self-inducing molecules that regulate the expression of genes involved in the production of virulence factors or biofilm formation in various plant pathogens (Qui&#x000F1;ones et al., <xref ref-type="bibr" rid="B151">2005</xref>). Many plants are capable of producing molecules that specifically interfere with QS systems of bacteria associated with plants, and in any case, depending on whether the bacterium is detected as a pathogen or as a beneficial microorganism, the molecule improves or inhibits QS-regulated phenotypes (P&#x000E9;rez-Monta&#x000F1;o et al., <xref ref-type="bibr" rid="B140">2013</xref>).</p></sec>
<sec>
<title>PGPR Used in Maize</title>
<p>Maize (<italic>Zea mays</italic> L.), which is a member of the Poaceae family, is one of the most important cereal crop species in the world and serves as a staple food for many populations (Rouf Shah et al., <xref ref-type="bibr" rid="B163">2016</xref>). According to the International Grains Council (<xref ref-type="bibr" rid="B41">2019</xref>), global maize consumption is expected to reach new peaks in the coming years (projection until 2024), and the use of maize for animal feed is expected to increase during the same period.</p>
<p>Maize is among the three most important crop species in the world, providing almost half of the daily energy to organisms in Africa and the Americas (FAOSTAT Food Balance Sheets, <xref ref-type="bibr" rid="B52">2020</xref>). The demand for maize in response to growing populations will require marked increases in the production, sustainability, and resilience of maize-based agricultural systems (Shiferaw et al., <xref ref-type="bibr" rid="B179">2011</xref>).</p>
<p>To maintain increases in maize productivity, an increase in the amount of fertilizers will be necessary, resulting in both an increase in production costs and a greater negative impact on the environment. Many beneficial effects of plant growth-promoting rhizobacteria on crop growth and yield have been well-documented. Breedt et al. (<xref ref-type="bibr" rid="B23">2017</xref>) found an increase yield ranging from 24 to 34% using <italic>Paenibacillus alvei, B. safensis, B. pumilus</italic>, and <italic>Brevundimonas vesicularis</italic>. Cass&#x000E1;n et al. (<xref ref-type="bibr" rid="B29">2009</xref>) assessed the effect of the mixture of <italic>A. brasilense</italic> with <italic>Bradyrhizobium</italic> j<italic>aponicum</italic> and verified the increase of seeds germination rate, and early development. Kuan et al. (<xref ref-type="bibr" rid="B92">2016</xref>) reported that plant growth-promoting bacteria may provide a biological alternative to fix atmospheric N<sub>2</sub> and delay N remobilization in maize plant to increase crop yield based on an understanding that plant-N remobilization is directly correlated to its plant senescence promoting high ear up to 30.9% with reduced fertilizer-N input. Di Salvo et al. (<xref ref-type="bibr" rid="B47">2018</xref>) reported that PGPR used as inoculants of cereal crops including maize can improve their growth and grain yield. The crops responses to inoculation are complex because are defined by plant-microorganisms interactions, many of them still unknown. Thus, it is necessary to improve the knowledge about the microbial ecology of the rhizosphere of crops under different agricultural practices.</p>
<p>Several bacteria that have the ability to produce IAA and have positive effects on shoot and root weight and nutrient uptake on maize plants. Besides, activities like phosphorus solubilization, or even other non-evaluated PGPR traits that stimulate plant growth (Lobo et al., <xref ref-type="bibr" rid="B102">2019</xref>).</p>
<p>The bioprotective role of PGPR on maize crops has also been studied. The toxigenic fungus <italic>Fusarium</italic> is one of the significant genera associated with maize. Some PGPR such as <italic>Bacillus amyloliquefaciens</italic> and <italic>Microbacterium oleovorans</italic> were able to protect maize against <italic>Fusarium verticillioides</italic> when applied in the form of seed coatings (Pereira et al., <xref ref-type="bibr" rid="B139">2011</xref>). Interestingly, some PGPR species have appeared to promote plant growth by acting as both biofertilizers and as biocontrol agents. For instance, strains of <italic>B. cepacia</italic> have been observed with biocontrol characteristics against <italic>Fusarium</italic> spp. Simultaneously, they can also stimulate the growth of maize under iron-poor conditions via siderophore production (Bevivino et al., <xref ref-type="bibr" rid="B20">1998</xref>).</p></sec>
<sec>
<title>PGPR Used in Sugarcane</title>
<p>Sugarcane (a hybrid of <italic>Saccharum</italic> species) is one of the oldest and most valuable crop species in the world due to the vast benefits associated with its industrial use. Sugarcane is grown in tropical and subtropical regions (Chhabra et al., <xref ref-type="bibr" rid="B34">2016</xref>) and is mainly used to supply raw materials to the sugar industry for the production of sugar (Zhao and Li, <xref ref-type="bibr" rid="B209">2015</xref>). In addition, sugarcane also has global importance due to the benefits associated with the production of biofuel and biogas (Hoang et al., <xref ref-type="bibr" rid="B73">2015</xref>).</p>
<p>New technologies developed in all production sectors have allowed extending the period of sugarcane planting and, consequently, more efficient use of labor and inputs, thus increasing the sustainability and competitiveness of the sugar and alcohol industries (Oliveira et al., <xref ref-type="bibr" rid="B130">2012</xref>).</p>
<p>Among the various techniques available, PGPR stand out for their environmental and economic gains, which can reduce the amount of fertilizers needed, optimizing sugarcane production.</p>
<p>One of the most limitations for sugarcane production is the poor and inadequate fertile soil which fail to meet the nutritional and growth requirements and hence unable to achieve high production (Caione et al., <xref ref-type="bibr" rid="B26">2015</xref>). Phosphorus (P) is the most critical element with high interaction with soil Raj and Antil (<xref ref-type="bibr" rid="B152">2011</xref>) required in a small amount by sugarcane in comparison of N and K, but still plays an essential role in the development of tillering and root system and greatly influence the longevity (Kingston, <xref ref-type="bibr" rid="B89">2013</xref>).</p>
<p>The low availability of phosphorus is due to low P in the source material, clay absorption and its precipitation with oxides and hydroxides of iron and aluminum (Caione et al., <xref ref-type="bibr" rid="B26">2015</xref>). As consequence of it, a great amount of P fertilizers is applied in sugarcane production promoting high production cost. Furthermore, phosphate fertilizers are produced by rock phosphate and the phosphate source worldwide are not renewable (Sattari et al., <xref ref-type="bibr" rid="B169">2012</xref>).</p>
<p>Around 10&#x02013;30% of the phosphorus fertilizer applied in the first year is absorbed by the roots of cane crop whereas an intensive amount accumulates in the soil as fixed P, not available to plants (Syers et al., <xref ref-type="bibr" rid="B188">2008</xref>). Therefore, is urgent to find alternatives to reduce the use of phosphate fertilizers. Since every day looking to a more sustainable agriculture combined with increase in yield and economically practicable.</p>
<p>The use of plant growth-promoting rhizobacteria (PGPR) is a promising alternative in sugarcane production with low environmental impact to increase the efficiency of the use of mineral fertilizers including phosphate, providing high cost-effective yields (Spolaor et al., <xref ref-type="bibr" rid="B186">2016</xref>).</p>
<p>Several field and greenhouse studies with phosphate fertilizer in sugarcane (Calheiros et al., <xref ref-type="bibr" rid="B27">2012</xref>; Caione et al., <xref ref-type="bibr" rid="B26">2015</xref>; Albuquerque et al., <xref ref-type="bibr" rid="B4">2016</xref>; Borges et al., <xref ref-type="bibr" rid="B22">2019</xref>).</p>
<p>Rosa et al. (<xref ref-type="bibr" rid="B161">2020</xref>) evaluated the effect of inoculation with three PGPR species and five P doses in sugarcane and reported that the inoculation can play a fundamental role in cultivation, generating great benefits to the crop and saving fertilizers cost for the producers. These results revealed a combination of <italic>Azospirillum brasilense</italic> and <italic>Bacillus subtilis</italic> allied to the low cost of P<sub>2</sub>O<sub>5</sub> was the best fertilizers management in the sugarcane which is meaningful production practice of sugarcane.</p>
<p>Santos et al. (<xref ref-type="bibr" rid="B168">2018</xref>) reported that the use of <italic>B. subtilis</italic> together with by-products can improve soil fertility parameters and decrease adverse effects associated with vinasse fertilization, in addition to providing shoot and root growth and providing collective synergy for high yield of sugarcane production with environmental benefits. Moura et al. (<xref ref-type="bibr" rid="B121">2018</xref>) have shown that the use of <italic>Azospirillum</italic> in sugarcane crop improved root system leading to better water and nutrient uptake that in turn may influence yield positively. This report showed that the significant interaction of cultivar x water regime x <italic>Azospirillum</italic> inoculation suggests a complex interplay of these factors, likewise, involving indigenous plant auxin pool. Li et al. (<xref ref-type="bibr" rid="B96">2017</xref>) isolated <italic>Pseudomonas</italic> sp associated with sugarcane rhizosphere and verified useful activity the isolate such as phosphate solubilization, siderophore production, ACC deaminase activity, and IAA production, as well as N<sub>2</sub> fixing activity and diseases management. These features are measured as important PGP traits and have been found to be effective in improving the growth and nitrogen content of sugarcane plants. The association of PGPR in sugarcane production may be an eminent development biofertilizer application, for sustainable crops production, in reducing environmental pollution and in biological agri-business. (Muthukumarasamy et al., <xref ref-type="bibr" rid="B125">2017</xref>) verified that the association between diazotrophic P and K solubilizing <italic>Rosneateles terrae</italic> and <italic>Burkholderia gladioli</italic> with sugarcane were able to increase the leaf chlorophyll, N content and total biomass and encourage the farmers to use PGPR to improve N, K, and K availability in the soil.</p></sec></sec>
<sec id="s4">
<title>Conclusions and Perspectives</title>
<p>This review has focused on a heterogeneous group of microorganisms found in the rhizosphere. These microorganisms live in association with roots, can stimulate plant growth and can reduce the incidence of diseases. Among the large number of PGPR, the most studied genera include <italic>Azospirillum, Bacillus</italic>, and <italic>Pseudomonas</italic>. The important role that PGPR play in agriculture is proven by the large number of publications on this topic to date. The exact mechanisms used by PGPR are not yet fully known, although some characteristics of these bacteria can be used to promote plant development. In addition, for these growth-promoting characteristics to have an effect on plants, bacteria need to be rhizosphere competent and must be able to survive in rhizospheric soil, where communities can be affected by a large number of factors, such as soil characteristics, plant genotype, and agricultural practices, that together determine the presence and predominance of certain microbial groups. Growth promotion of maize and sugarcane could be optimized with appropriate combinations of PGPR, environmental conditions and plant genotypes. In this sense, additional efforts must be made in the development of good inoculants and production systems that allow reducing the amount of chemical fertilizers and insecticides used to increase soil fertility and crop productivity.</p></sec>
<sec id="s5">
<title>Author Contributions</title>
<p>All authors listed have made a substantial, direct and intellectual contribution to the work, and approved it for publication.</p></sec>
<sec id="s6">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p></sec>
</body>
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