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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Soil Sci.</journal-id>
<journal-title>Frontiers in Soil Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Soil Sci.</abbrev-journal-title>
<issn pub-type="epub">2673-8619</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fsoil.2025.1540137</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Soil Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Changes in soil organic matter content and quality after application of different organic and mineral fertilisers in 27 years long-term field experiments on luvisol</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Bal&#xed;k</surname>
<given-names>Ji&#x159;&#xed;</given-names>
</name>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2914551/overview"/>
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<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Suran</surname>
<given-names>Pavel</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/2810625/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>&#x10c;ern&#xfd;</surname>
<given-names>Jind&#x159;ich</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/2949985/overview"/>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Sedl&#xe1;&#x159;</surname>
<given-names>Ond&#x159;ej</given-names>
</name>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kulh&#xe1;nek</surname>
<given-names>Martin</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/2739208/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Proch&#xe1;zkov&#xe1;</surname>
<given-names>Simona</given-names>
</name>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
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</contrib-group>
<aff id="aff1">
<institution>Department of Agro-Environmental Chemistry and Plant Nutrition, Faculty of Agrobiology,
Food and Natural Resources, Czech University of Life Sciences Prague</institution>, <addr-line>Prague</addr-line>, <country>Czechia</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Giovanni Mastrolonardo, University of Florence, Italy</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Muhammad Mohsin Abrar, Zhongkai University of Agriculture and Engineering, China</p>
<p>Knight Nthebere, National University of Lesotho, Lesotho</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Ji&#x159;&#xed; Bal&#xed;k, <email xlink:href="mailto:balik@af.czu.cz">balik@af.czu.cz</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>27</day>
<month>03</month>
<year>2025</year>
</pub-date>
<pub-date pub-type="collection">
<year>2025</year>
</pub-date>
<volume>5</volume>
<elocation-id>1540137</elocation-id>
<history>
<date date-type="received">
<day>05</day>
<month>12</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>12</day>
<month>03</month>
<year>2025</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2025 Bal&#xed;k, Suran, &#x10c;ern&#xfd;, Sedl&#xe1;&#x159;, Kulh&#xe1;nek and Proch&#xe1;zkov&#xe1;</copyright-statement>
<copyright-year>2025</copyright-year>
<copyright-holder>Bal&#xed;k, Suran, &#x10c;ern&#xfd;, Sedl&#xe1;&#x159;, Kulh&#xe1;nek and Proch&#xe1;zkov&#xe1;</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The soil organic matter (SOM) content and quality are the fundamentals of soil fertility and contribute significantly to soil carbon sequestration. The soil glomalin content is increasingly recognized as an indicator of SOM quality. The objective of this study was to evaluate the capability and contribution of the easily extractable glomalin (EEG), total glomalin (TG) content, potential wettability index (PWI) of soil aggregates, and water stability of soil aggregates (WSA) as instrumental indicators of long-term SOM quality changes. The obtained results on EEG, TG, PWI, and WSA were compared to the results of humic substances fractionation, specifically their relationship to carbon in humic substances, humic acids, and fulvic acids (C<sub>HS</sub>, C<sub>HA</sub>, and C<sub>FA</sub>, respectively). We used long-term field experiments (27 years) with a simple crop rotation starting with potatoes (site A) or maize (site B), followed by winter wheat and spring barley (on both sites) on the luvisol soil type. Fertiliser treatments were based on the application of uniform 330 kg N ha<sup>-1</sup> per three years. Treatments were as follows: unfertilised control (Cont), sewage sludge in normal and triple dose (SS1 and SS3, respectively), farmyard manure in the conventional dose and half dose with mineral nitrogen (F1 and F1/2+N1/2, respectively), straw and mineral N fertiliser (N+St), and mineral N only (N). For the evaluation of the fertiliser effect, data from both sites were pooled together. The farmyard manure application in the F1 treatment showed the best potential for improving the SOM quality (the highest C<sub>HA</sub>, humification rate, humification index, TG content, and WSA). The results of Cont treatment show degradation of SOM content and quality. No significant effect of fertiliser treatment on the EEG was observed. The TG content was significantly influenced by fertiliser in the F1, F1/2+N1/2, and SS3 treatments (1965, 1958, and 1989 mg kg<sup>-1</sup>, respectively) in comparison with the Cont (1443 mg kg<sup>-1</sup>). The TG content was in a tight relationship with the C<sub>HA</sub> content (R<sup>2</sup> = 0.298; <italic>p</italic>&lt;0.001). The PWI was also influenced by the treatment. There was a significant positive relationship between PWI and C<sub>HS</sub> (R<sup>2</sup> = 0.550), C<sub>HA</sub> (R<sup>2</sup> = 0.249), and C<sub>FA</sub> (R<sup>2</sup> = 0.492), <italic>p</italic>&lt;0.001. No significant relationship was established between the WSA and SOM quality indicators. Both TG content and PWI can be used as indicators of SOM quality in long-term experiments. On the other hand, the EEG content and WSA are not capable of determining the changes in the SOM quality.</p>
</abstract>
<kwd-group>
<kwd>GRSP</kwd>
<kwd>glomalin-related soil protein</kwd>
<kwd>potential wettability index</kwd>
<kwd>soil aggregate stability</kwd>
<kwd>soil organic carbon</kwd>
<kwd>organic fertilizers</kwd>
</kwd-group>
<counts>
<fig-count count="3"/>
<table-count count="7"/>
<equation-count count="7"/>
<ref-count count="98"/>
<page-count count="17"/>
<word-count count="10297"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Soil Organic Matter Dynamics and Carbon Sequestration</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>The prevailing demands for food production has drawn greater attention to the sustainability of farming systems, concerning climate change in particular (<xref ref-type="bibr" rid="B1">1</xref>). Over the past several decades, Europe traditional agricultural practices have undergone significant changes. Crop production and animal husbandry have largely been separated. Crop rotations have shifted (with notable reductions in alfalfa and clover proportions) and considerably intensified. The use of organic fertilisers has declined. Farmyard manure is increasingly being replaced by digestate from biogas plants, with greater incorporation of cereal straw into the soil or alternative sources of organic matter, such as sewage sludge. Crop rotations on arable land now predominantly consist of winter wheat, spring barley, winter canola, and maize (<xref ref-type="bibr" rid="B2">2</xref>). One of the keystones of sustainable farming is appropriate care for the soil organic matter. Soil organic matter (SOM) content and quality influence a wide range of physical, chemical and biological attributes, and processes, including the formation and stabilisation of soil aggregates, nutrient cycling, water retention, disease suppression, pH buffering and cation exchange capacity (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B4">4</xref>). Additionally, soil carbon sequestration can be part of the solution in tempering the adverse impact of climate change. Changes in the content and quality of organic matter are a long-term process (<xref ref-type="bibr" rid="B5">5</xref>) and long-term field experiments can provide useful insight.</p>
<p>In recent decades, considerable attention has been devoted to research on different methods to be used for determining SOM content and quality. The SOM quality indicators have evolved over time due to the complexity of organic matter and advancements in analytical techniques. Most recent studies assess organic matter quality by fractionating it into humic and fulvic acids, as described in previous research (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B7">7</xref>). Humic substances are now more accurately characterized as supermolecular associations rather than macromolecular polymers (<xref ref-type="bibr" rid="B8">8</xref>). Nevertheless, studies that use or further develop the fractionation of organic matter into humic and fulvic acids continue to be published (<xref ref-type="bibr" rid="B9">9</xref>).</p>
<p>Recent research has elevated glomalin to a prominent status as a key indicator of SOM quality, underscoring its importance in soil science (<xref ref-type="bibr" rid="B10">10</xref>, <xref ref-type="bibr" rid="B11">11</xref>). Glomalin production and its accumulation in soil vary depending on plant species, associated arbuscular mycorrhizal fungi (AMF), and soil properties (<xref ref-type="bibr" rid="B12">12</xref>&#x2013;<xref ref-type="bibr" rid="B14">14</xref>). In their pioneering work, Wright and Upadhyaya (<xref ref-type="bibr" rid="B15">15</xref>) identified two glomalin fractions: easily extractable glomalin (EEG) and total glomalin (TG) (<xref ref-type="bibr" rid="B16">16</xref>, <xref ref-type="bibr" rid="B17">17</xref>). More recent literature also refers to a fraction known as difficultly extractable glomalin (<xref ref-type="bibr" rid="B18">18</xref>). A high temperature extraction with sodium citrate is used to extract the glomalin fractions. This method is non-specific to glomalin (the product of AMF) as it extracts additional stable proteins (products of plants, bacteria, and other autotrophs) as well as organic compounds like lipids, humic acids, and fatty acids (<xref ref-type="bibr" rid="B15">15</xref>, <xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B20">20</xref>). In our previous study, we explored the relationships between glomalin and other soil properties like the content of humic substances, humic acids, fulvic acids as well as bulk density, porosity, and clay content (<xref ref-type="bibr" rid="B14">14</xref>). A significant correlation between TG, carbon in soil organic matter (C<sub>SOM</sub>), and the degree of polymerisation (HA) was determined. A significant correlation was observed between TG and clay content (size&lt;0.002&#xa0;mm particles), as well as particles smaller than 0.01&#xa0;mm. Significantly increased content of TG was observed on chernozem soil types in comparison to others (luvisols, cambisols, fluvisols) (<xref ref-type="bibr" rid="B21">21</xref>). No relationship was determined between glomalin content and soil exchangeable pH determined in the CaCl<sub>2</sub> solution (pH<sub>CaCl2</sub>) in periodically monitored arable soil of the Czech Republic in different soil-climate conditions (<xref ref-type="bibr" rid="B21">21</xref>). Similarly, Nichols and Wright (<xref ref-type="bibr" rid="B22">22</xref>) determined significant relationship between clay content and glomalin content in the soils of the USA.</p>
<p>Glomalin is a glycoprotein with naturally adhesive and sticky properties that binds soil particles and organic matter, promoting the aggregation of soil particles. This, in turn, improves soil physical properties, such as bulk density, porosity (<xref ref-type="bibr" rid="B23">23</xref>), and water retention capacity, ultimately reducing erosion (<xref ref-type="bibr" rid="B24">24</xref>). Soils treated with mineral and organic fertilisers generally contain higher glomalin content compared to unfertilised soils (<xref ref-type="bibr" rid="B25">25</xref>&#x2013;<xref ref-type="bibr" rid="B27">27</xref>). The long-term application of manure (<xref ref-type="bibr" rid="B25">25</xref>, <xref ref-type="bibr" rid="B26">26</xref>, <xref ref-type="bibr" rid="B28">28</xref>), compost (<xref ref-type="bibr" rid="B26">26</xref>, <xref ref-type="bibr" rid="B28">28</xref>, <xref ref-type="bibr" rid="B29">29</xref>), and straw (<xref ref-type="bibr" rid="B30">30</xref>, <xref ref-type="bibr" rid="B31">31</xref>) also increases glomalin content. Additionally, the combined application of mineral fertiliser and straw positively influences glomalin content (<xref ref-type="bibr" rid="B31">31</xref>). In our previous long-term field experiments with maize monoculture on chernozem, a significant increase in total glomalin (TG) content was observed following the application of sewage sludge, compared to both unfertilised controls and mineral nitrogen fertiliser treatments (<xref ref-type="bibr" rid="B32">32</xref>). Generally, TG content is positively correlated with carbon in soil organic matter (C<sub>SOM</sub>) content (<xref ref-type="bibr" rid="B33">33</xref>). However, in the study previously conducted monitoring glomalin levels across the Czech Republic, we found no correlation between the amount of applied organic matter (carbon inputs) and soil glomalin content (in both EEG and TG fractions). Furthermore, the type of organic fertiliser applied (straw, manure, or compost) did not have a significant effect on glomalin content (<xref ref-type="bibr" rid="B21">21</xref>).</p>
<p>The advantage of infrared spectroscopy lies in its rapid analysis and the generation of spectra, which allow for the simultaneous determination of multiple soil parameters. For SOM analysis, the near-infrared region is typically used to calculate SOM content, while the mid-infrared region is used to assess SOM quality (<xref ref-type="bibr" rid="B34">34</xref>). Mid-infrared spectra can reveal the presence of various organic components in soil (such as aromatic and aliphatic compounds, polysaccharides, and lignin) and provide insights into their proportions in organic matter and their impact on SOM&#x2019;s affinity to water. The potential wettability index (PWI) characterizes SOM by evaluating the ratio of aliphatic (C-H) to carboxylic (C-O) bonds. A significant correlation between PWI and C<sub>SOM</sub> content has been previously reported (<xref ref-type="bibr" rid="B35">35</xref>). Additionally, a strong correlation was found between PWI and TG content in luvisol soil (<xref ref-type="bibr" rid="B36">36</xref>), though this relationship was not confirmed in chernozem (<xref ref-type="bibr" rid="B37">37</xref>). In long-term field experiments on cambisol, a strong correlation was observed between PWI and C<sub>SOM</sub>, carbon in humic acids (C<sub>HA</sub>), and carbon in fulvic acids (C<sub>FA</sub>) (<xref ref-type="bibr" rid="B38">38</xref>).</p>
<p>The main factors influencing soil aggregate stability include SOM, clay content, and the presence of iron, manganese, aluminium, and other oxides (<xref ref-type="bibr" rid="B39">39</xref>&#x2013;<xref ref-type="bibr" rid="B42">42</xref>). It is a generally accepted fact that adding organic matter, like manure, increases the stability of soil aggregates. The effectiveness of the addition of organic matter depends on its degree of decomposition and its capacity to integrate with SOM. Hydrophobic components are known to stabilize soil structure (<xref ref-type="bibr" rid="B43">43</xref>), protecting soil aggregates by making them water-repellent (<xref ref-type="bibr" rid="B44">44</xref>). The surface water repellency slows down water penetration into the aggregates, which in turn protects them. Plant roots, soil fungi, and soil bacteria reinforce the aggregates or produce certain substances, that promote aggregation (<xref ref-type="bibr" rid="B45">45</xref>).</p>
<p>Mineral fertilisers can negatively impact soil aggregates (<xref ref-type="bibr" rid="B46">46</xref>), likely due to a decrease in pH and the accumulation of higher levels of NH&#x2084;&#x207a; ions in the soil. Another contributing factor could be the increased mineralisation of stable SOM (the priming effect) induced by mineral nitrogen application.</p>
<p>A positive impact on soil aggregate stability has been observed with manure application, or when manure is combined with mineral fertiliser (<xref ref-type="bibr" rid="B47">47</xref>&#x2013;<xref ref-type="bibr" rid="B49">49</xref>). On the other hand, Stehl&#xed;kov&#xe1; et&#xa0;al. (<xref ref-type="bibr" rid="B50">50</xref>) did not establish any effect of manure application on the stability of soil aggregates. High intensity of sewage sludge application increased the water-stability of aggregates (WSA) compared to mineral N treatment, but the values of WSA were significantly lower, than those in unfertilised control treatment (<xref ref-type="bibr" rid="B36">36</xref>).</p>
<p>The present study is aimed to: i) determine the influence of mineral fertiliser, sewage sludge, farmyard manure, and straw incorporation on the content and quality of soil organic matter (SOM); ii) evaluate the information on glomalin content as an indicator of SOM quality; iii) evaluate the ability of potential wettability index (PWI) method on SOM quality determination; iv) determine the influence of fertiliser on the stability of soil aggregates. The content of glomalin in the soil is becoming an indicator for the evaluation of the SOM quality during the monitoring of the Czech Republic soils. It is a pioneering activity, as there are no set criteria for the evaluation of the glomalin content levels at this point. We used 27-year-old stationary long-term field experiments with a three-crop rotation on luvisol. This soil type is fertile and suitable for a wide range of agricultural uses, covering 500 to 600 million hectares globally (<xref ref-type="bibr" rid="B51">51</xref>).</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<p>The effect of fertilisation on the content of glomalin in soil was observed in long-term field trials established in 1996 at the experimental base at Hn&#x11b;v&#x10d;eves and &#x10c;erven&#xfd; &#xda;jezd sites (sites A and B, respectively henceforth). Soil type on both sites is haplic luvisol (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). The available phosphorus (P) and potassium (K) content in soil (estimated by the Mehlich 3 method) was sufficient for crops. Within these trials, three crops were rotated in the following order: potatoes at site A and maize at site B, followed by winter wheat and spring barley at both sites. Selected crop rotation represented 50.2% of arable soil in the Czech Republic in 2024 (<xref ref-type="bibr" rid="B52">52</xref>). Each year, all crops were grown. The size of the experimental plot was 20 m<sup>2</sup>, and each treatment is replicated in 4 plots. The total area of treatment was 80 m<sup>2</sup>. The plots were assembled in a randomised complete block design. The trial included seven treatments (1): no fertilisation (Cont); (2) sewage sludge (SS1); (3) high dose of sewage sludge (SS3); (4) farmyard manure (F1); (5) half dose of farmyard manure + mineral nitrogen fertiliser (F1/2+N1/2); (6) mineral nitrogen fertiliser (N); (7) spring barley straw + mineral nitrogen fertiliser (N+St) (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). With the exception of SS3 treatment, the experiments are representative of agricultural practices in the Czech Republic. Organic fertilisers (farmyard manure, sewage sludge, and straw) were always applied in autumn (October) to potatoes or maize and were immediately incorporated in the soil to approximately 25 cm depth with ploughing. <xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref> displays the organic fertiliser dose. The remaining treatments were ploughed to the same depth at the same time. Mineral nitrogen fertilisers in the form of calcium ammonium nitrate were applied to maize and spring barley in spring, before the crop establishment. In the case of winter wheat, the dose of nitrogen was divided in half, with the first half applied at BBCH 21 and the second at BBCH 31&#x2013;32. The nitrogen content was 140 kg N ha<sup>-1</sup> for wheat and 70 kg N ha<sup>-1</sup> for spring barley; F1/2+N1/2 was applied at the rate of 115 kg N ha<sup>-1</sup> for wheat and 50 kg N ha<sup>-1</sup> for spring barley.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Characteristics of experimental fields.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Site</th>
<th valign="middle" align="center">Hn&#x11b;v&#x10d;eves (A)</th>
<th valign="middle" align="center">&#x10c;erven&#xfd; &#xda;jezd (B)</th>
</tr>
<tr>
<th valign="middle" rowspan="2" align="center">Location</th>
<th valign="middle" align="center">50&#xb0;18&#xb4;46&#xb4;&#xb4;N</th>
<th valign="middle" align="center">50&#xb0;4&#xb4;22&#xb4;&#xb4;N</th>
</tr>
<tr>
<th valign="middle" align="center">15&#xb0;43&#xb4;3&#xb4;&#xb4;E</th>
<th valign="middle" align="center">14&#xb0;10&#xb4;19&#xb4;&#xb4;E</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="center">Altitude (meters above see level)</td>
<td valign="middle" align="center">265</td>
<td valign="middle" align="center">410</td>
</tr>
<tr>
<td valign="middle" align="center">Mean annual temperature (&#xb0;C)</td>
<td valign="middle" align="center">8.2</td>
<td valign="middle" align="center">7.7</td>
</tr>
<tr>
<td valign="middle" align="center">Mean annual precipitation (mm)</td>
<td valign="middle" align="center">573</td>
<td valign="middle" align="center">493</td>
</tr>
<tr>
<td valign="middle" align="center">Soil type <sup>1)</sup>
</td>
<td valign="middle" align="center">Haplic Luvisol</td>
<td valign="middle" align="center">Haplic Luvisol</td>
</tr>
<tr>
<td valign="middle" align="center">Soil texture <sup>1)</sup>
</td>
<td valign="middle" align="center">clay loam</td>
<td valign="middle" align="center">loam</td>
</tr>
<tr>
<td valign="middle" align="center">Clay (%) (&lt;0.002 mm)</td>
<td valign="middle" align="center">4.4</td>
<td valign="middle" align="center">5.4</td>
</tr>
<tr>
<td valign="middle" align="center">Silt (%) (0.002-0.05 mm)</td>
<td valign="middle" align="center">77.0</td>
<td valign="middle" align="center">68.1</td>
</tr>
<tr>
<td valign="middle" align="center">Sand (%) (0.05-2 mm)</td>
<td valign="middle" align="center">18.7</td>
<td valign="middle" align="center">26.5</td>
</tr>
<tr>
<td valign="middle" align="center">Bulk density (g.cm<sup>-3</sup>)</td>
<td valign="middle" align="center">1.50</td>
<td valign="middle" align="center">1.47</td>
</tr>
<tr>
<td valign="middle" align="center">C<sub>SOM</sub> (%)</td>
<td valign="middle" align="center">1.1</td>
<td valign="middle" align="center">1.3</td>
</tr>
<tr>
<td valign="middle" align="center">C<sub>SOM</sub>/N<sub>T</sub>
</td>
<td valign="middle" align="center">9.3</td>
<td valign="middle" align="center">9.6</td>
</tr>
<tr>
<td valign="middle" align="center">pH (CaCl<sub>2</sub>) <sup>2)</sup>
</td>
<td valign="middle" align="center">5.9</td>
<td valign="middle" align="center">6.5</td>
</tr>
<tr>
<td valign="middle" align="center">P in Mehlich 3 (mg kg<sup>-1</sup>) <sup>3)</sup>
</td>
<td valign="middle" align="center">120</td>
<td valign="middle" align="center">90</td>
</tr>
<tr>
<td valign="middle" align="center">K in Mehlich 3 (mg kg<sup>-1</sup>) <sup>3)</sup>
</td>
<td valign="middle" align="center">195</td>
<td valign="middle" align="center">175</td>
</tr>
<tr>
<td valign="middle" align="center">Al in Mehlich 3 (mg kg<sup>-1</sup>) <sup>3)</sup>
</td>
<td valign="middle" align="center">811</td>
<td valign="middle" align="center">588</td>
</tr>
<tr>
<td valign="middle" align="center">Fe in Mehlich 3 (mg kg<sup>-1</sup>) <sup>3)</sup>
</td>
<td valign="middle" align="center">355</td>
<td valign="middle" align="center">236</td>
</tr>
<tr>
<td valign="middle" align="center">Mn in Mehlich 3 (mg kg<sup>-1</sup>) <sup>3)</sup>
</td>
<td valign="middle" align="center">117</td>
<td valign="middle" align="center">176</td>
</tr>
<tr>
<td valign="middle" align="center">Al in Aqua regia <sup>4)</sup> (in HNO<sub>3</sub> <sup>5)</sup>) (g kg<sup>-1</sup>)</td>
<td valign="middle" align="center">30.62 (6.61)</td>
<td valign="middle" align="center">34.14 (6.69)</td>
</tr>
<tr>
<td valign="middle" align="center">Fe in Aqua regia <sup>4)</sup> (in HNO<sub>3</sub> <sup>5)</sup>) (g kg<sup>-1</sup>)</td>
<td valign="middle" align="center">21.39 (8.58)</td>
<td valign="middle" align="center">26.36 (10.00)</td>
</tr>
<tr>
<td valign="middle" align="center">Mn in Aqua regia <sup>4)</sup> (in HNO<sub>3</sub> <sup>5)</sup>) (mg kg<sup>-1</sup>)</td>
<td valign="middle" align="center">562 (434)</td>
<td valign="middle" align="center">818 (656)</td>
</tr>
<tr>
<td valign="middle" align="center">CEC (mmol<sub>(+)</sub>/kg)</td>
<td valign="middle" align="center">116</td>
<td valign="middle" align="center">118</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>CEC &#x2013; cation exchange capacity.</p>
</fn>
<fn>
<p>
<sup>1)</sup> According to the national resource conservation services &#x2013; united states department of agriculture (<xref ref-type="bibr" rid="B53">53</xref>).</p>
</fn>
<fn>
<p>
<sup>2)</sup> The pH was determined according to Minasny et&#xa0;al. (<xref ref-type="bibr" rid="B54">54</xref>).</p>
</fn>
<fn>
<p>
<sup>3)</sup> Plant available content extracted using Mehlich (<xref ref-type="bibr" rid="B55">55</xref>).</p>
</fn>
<fn>
<p>
<sup>4)</sup> Pseudototal content using the aqua regia digestion ISO: 11466 1995 (<xref ref-type="bibr" rid="B56">56</xref>).</p>
</fn>
<fn>
<p>
<sup>5)</sup> Nitric acid extraction according to Sparks et&#xa0;al. (<xref ref-type="bibr" rid="B57">57</xref>).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Application rates of nutrients (kg ha<sup>-1</sup> per 3 years).</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" rowspan="3" align="center">Treatment</th>
<th valign="middle" colspan="5" align="center">Potatoes (site A)/Maize (site B)</th>
<th valign="middle" align="center">Wheat</th>
<th valign="middle" align="center">Barley</th>
</tr>
<tr>
<th valign="middle" align="center">N</th>
<th valign="middle" colspan="2" align="center">P</th>
<th valign="middle" colspan="2" align="center">K</th>
<th valign="middle" align="center">N</th>
<th valign="middle" align="center">N</th>
</tr>
<tr>
<th valign="middle" align="center"/>
<th valign="middle" align="center">Site A</th>
<th valign="middle" align="center">Site B</th>
<th valign="middle" align="center">Site A</th>
<th valign="middle" align="center">Site B</th>
<th valign="middle" align="center"/>
<th valign="middle" align="center"/>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="center">Cont.</td>
<td valign="middle" align="center">-</td>
<td valign="middle" align="center">-</td>
<td valign="middle" align="center">-</td>
<td valign="middle" align="center">-</td>
<td valign="middle" align="center">-</td>
<td valign="middle" align="center">-</td>
<td valign="middle" align="center">-</td>
</tr>
<tr>
<td valign="middle" align="center">SS1</td>
<td valign="middle" align="center">330 <sup>1)</sup>
</td>
<td valign="middle" align="center">215 <sup>2)</sup>
</td>
<td valign="middle" align="center">215 <sup>2)</sup>
</td>
<td valign="middle" align="center">44 <sup>2)</sup>
</td>
<td valign="middle" align="center">44 <sup>2)</sup>
</td>
<td valign="middle" align="center">0</td>
<td valign="middle" align="center">0</td>
</tr>
<tr>
<td valign="middle" align="center">SS3</td>
<td valign="middle" align="center">990 <sup>1)</sup>
</td>
<td valign="middle" align="center">645 <sup>2)</sup>
</td>
<td valign="middle" align="center">645 <sup>2)</sup>
</td>
<td valign="middle" align="center">132 <sup>2)</sup>
</td>
<td valign="middle" align="center">132 <sup>2)</sup>
</td>
<td valign="middle" align="center">0</td>
<td valign="middle" align="center">0</td>
</tr>
<tr>
<td valign="middle" align="center">F1</td>
<td valign="middle" align="center">330 <sup>1)</sup>
</td>
<td valign="middle" align="center">90 <sup>3)</sup>
</td>
<td valign="middle" align="center">108 <sup>3)</sup>
</td>
<td valign="middle" align="center">389 <sup>3)</sup>
</td>
<td valign="middle" align="center">356 <sup>3)</sup>
</td>
<td valign="middle" align="center">0</td>
<td valign="middle" align="center">0</td>
</tr>
<tr>
<td valign="middle" align="center">F1/2+N1/2</td>
<td valign="middle" align="center">165</td>
<td valign="middle" align="center">45</td>
<td valign="middle" align="center">54</td>
<td valign="middle" align="center">195</td>
<td valign="middle" align="center">178</td>
<td valign="middle" align="center">115</td>
<td valign="middle" align="center">50</td>
</tr>
<tr>
<td valign="middle" align="center">N</td>
<td valign="middle" align="center">120</td>
<td valign="middle" align="center">0</td>
<td valign="middle" align="center">0</td>
<td valign="middle" align="center">0</td>
<td valign="middle" align="center">0</td>
<td valign="middle" align="center">140</td>
<td valign="middle" align="center">70</td>
</tr>
<tr>
<td valign="middle" align="center">N+St</td>
<td valign="middle" align="center">120 + St <sup>5)</sup>
</td>
<td valign="middle" align="center">3.6 <sup>4)</sup>
</td>
<td valign="middle" align="center">7.0 <sup>4)</sup>
</td>
<td valign="middle" align="center">47 <sup>4)</sup>
</td>
<td valign="middle" align="center">55 <sup>4)</sup>
</td>
<td valign="middle" align="center">140</td>
<td valign="middle" align="center">70</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<sup>1)</sup> Nitrogen as the total nitrogen in sewage sludge and farmyard manure.</p>
</fn>
<fn>
<p>
<sup>2)</sup> Average yearly dose depends on the nutrient content in sewage sludge.</p>
</fn>
<fn>
<p>
<sup>3)</sup> Average yearly dose depends on the nutrient content in farmyard manure.</p>
</fn>
<fn>
<p>
<sup>4)</sup> Average yearly dose depends on the nutrient content in straw.</p>
</fn>
<fn>
<p>
<sup>5)</sup> 120 kg N mineral fertilisers + nitrogen in straw (A: 28 kg N; B: 27 kg N).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>The organic fertilisers dose and quality.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Quality of fertiliser/site</th>
<th valign="middle" align="center">Fresh matter</th>
<th valign="middle" align="center">% DM</th>
<th valign="middle" align="center">Dry mass</th>
<th valign="middle" align="center">&#x2211; DM per 27 years</th>
<th valign="middle" align="center">% C in DM</th>
<th valign="middle" align="center">Total supplied C (t per 27 years)</th>
<th valign="middle" align="center">C/N</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="center">Farmyard manure</td>
<td valign="middle" align="center">t per 3 years</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center">t per 3 years</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">Site A</td>
<td valign="middle" align="center">61.87</td>
<td valign="middle" align="center">23.55</td>
<td valign="middle" align="center">14.57</td>
<td valign="middle" align="center">131.13</td>
<td valign="middle" align="center">29.5</td>
<td valign="middle" align="center">38.70</td>
<td valign="middle" align="center">13.06</td>
</tr>
<tr>
<td valign="middle" align="center">Site B</td>
<td valign="middle" align="center">55.18</td>
<td valign="middle" align="center">27.33</td>
<td valign="middle" align="center">15.08</td>
<td valign="middle" align="center">135.72</td>
<td valign="middle" align="center">27.9</td>
<td valign="middle" align="center">37.90</td>
<td valign="middle" align="center">12.66</td>
</tr>
<tr>
<td valign="middle" align="center">Sewage sludge</td>
<td valign="middle" align="center">t per 3 years</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center">t per 3 years</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">Site A</td>
<td valign="middle" align="center">28.06</td>
<td valign="middle" align="center">32.40</td>
<td valign="middle" align="center">9.09</td>
<td valign="middle" align="center">81.81</td>
<td valign="middle" align="center">25.8</td>
<td valign="middle" align="center">21.11</td>
<td valign="middle" align="center">7.0</td>
</tr>
<tr>
<td valign="middle" align="center">Site B</td>
<td valign="middle" align="center">28.06</td>
<td valign="middle" align="center">32.40</td>
<td valign="middle" align="center">9.09</td>
<td valign="middle" align="center">81.81</td>
<td valign="middle" align="center">25.8</td>
<td valign="middle" align="center">21.11</td>
<td valign="middle" align="center">7.0</td>
</tr>
<tr>
<td valign="middle" align="center">Straw</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">t per 3 years</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">Site A</td>
<td valign="middle" align="center">&#x2013;</td>
<td valign="middle" align="center">&#x2013;</td>
<td valign="middle" align="center">5.00</td>
<td valign="middle" align="center">45.00</td>
<td valign="middle" align="center">42.8</td>
<td valign="middle" align="center">19.26</td>
<td valign="middle" align="center">76.4</td>
</tr>
<tr>
<td valign="middle" align="center">Site B</td>
<td valign="middle" align="center">&#x2013;</td>
<td valign="middle" align="center">&#x2013;</td>
<td valign="middle" align="center">5.00</td>
<td valign="middle" align="center">45.00</td>
<td valign="middle" align="center">42.8</td>
<td valign="middle" align="center">19.26</td>
<td valign="middle" align="center">79.3</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Organic fertilisers were applied 9 times during the entire experiment. SS3 is sewage sludge applied in a triple dose of SS1. F1/2+N1/2 is farmyard manure applied in half a dose of F1. Farmyard manure applied at both sites was produced locally. The sewage sludge for both sites was provided by the same producer. DM, dry matter.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<sec id="s2_1">
<label>2.1</label>
<title>Soil sampling</title>
<p>The top 30 cm layer of the soil was sampled right after the spring barley harvest. Each plot was sampled seven times. The samples were pooled to produce a representative sample from the plot. This way, four representative samples from each treatment were produced. The soil samples were later dried in a force-air drier at 40&#xb0;C until the constant weight. Once dry, samples were sieved for &lt;2 mm particles for all analyses. A portion of the sample was also sieved for &lt;0.4 mm particles for the CNS elemental analyser.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Soil analysis</title>
<p>The Soil organic carbon (C<sub>SOM</sub>) content was assessed through oxidation using the CNS Analyzer Elementar Vario Macro (Elementar Analysensysteme, Hanau near&#x2014;Frankfurt am Main, Germany).</p>
<p>The fractionation of carbon in humic substances (C<sub>HS</sub>) was carried out following the method described by Kononova (<xref ref-type="bibr" rid="B58">58</xref>) to obtain the pyrophosphate-extractable fraction, which represents the sum of carbon in humic acids (C<sub>HA</sub>) and fulvic acids (C<sub>FA</sub>). Below is a summary of the procedure: A 5 g soil sample was extracted using a mixed solution of 0.10 mol L<sup>&#x2212;1</sup> NaOH and 0.10 mol L<sup>&#x2212;1</sup> Na<sub>4</sub>P<sub>2</sub>O<sub>7</sub> (1:20 w/v). This extraction process isolated the C<sub>HA</sub> and C<sub>FA</sub> fractions. The C<sub>FA</sub> was obtained by acidifying the solution with dilute H<sub>2</sub>SO<sub>4</sub> to a pH of 1.0&#x2013;1.5, and the solution was left undisturbed for 24 hours. C<sub>HA</sub> was recovered by dissolving the precipitate formed during acidification in hot 0.05 mol L<sup>&#x2212;1</sup> NaOH. Before iodometric titration, the dry matter from each sample, obtained through vaporisation, was dissolved in a mixture of 0.067 mol L<sup>&#x2212;1</sup> K<sub>2</sub>Cr<sub>2</sub>O<sub>7</sub> and concentrated H<sub>2</sub>SO<sub>4</sub> under elevated temperature conditions. Humification indices were calculated according to Raiesi (<xref ref-type="bibr" rid="B59">59</xref>) and Iqbal et&#xa0;al. (<xref ref-type="bibr" rid="B60">60</xref>):</p>
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<p>where C<sub>FA</sub> is the fulvic acid carbon, C<sub>HA</sub> is the humic acid carbon, and C<sub>SOM</sub> is the total organic carbon in soil.</p>
<p>The easily extractable glomalin (EEG) and total glomalin (TG) were analysed according to the method of Wright and Upadhyaya (<xref ref-type="bibr" rid="B10">10</xref>). In summary, 1.00 g of air-dried soil (&lt;2 mm) was mixed with 8 mL of sodium citrate (20 mmol L<sup>&#x2212;1</sup> at pH 7.0 for EEG and 50 mmol L<sup>&#x2212;1</sup> at pH 8.0 for TG). The mixture was autoclaved at 121&#xb0;C for 30 minutes for EEG and 60 minutes for TG, then cooled and centrifuged at 5000 rpm for 10 minutes for EEG and 15 minutes for TG. For TG, the supernatant was centrifuged five times until the characteristic red-brown colour, typical of glomalin, was no longer observed. Both forms of glomalin were quantified colourimetrically using bovine serum albumin (BSA) as a standard and the Bradford protein assay (both from Bio-Rad, CA, Hercules, USA) to detect the colour change. The glomalin content in the extracts was determined using the Tecan Infinite M Plex multimode microplate reader (M&#xe4;nnedorf, Switzerland) at 595 nm.</p>
<p>The potential wettability index (PWI) and index of aromaticity (iAR) were determined using DRIFT (diffuse reflectance infrared Fourier transform spectroscopy) spectra. The DRIFT spectra were captured with an infrared spectrometer (Nicolet IS10, Waltham, MA, USA), covering a range from 2.50 to 25.0 &#x3bc;m (4000 to 400 cm<sup>&#x2212;1</sup>). Alkyl C&#x2013;H group bands (2948&#x2013;2920 cm<sup>&#x2212;1</sup> and 2864&#x2013;2849 cm<sup>&#x2212;1</sup>) were considered indicative of hydrophobicity, while C=O group bands (1710 cm<sup>&#x2212;1</sup> and 1640&#x2013;1600 cm<sup>&#x2212;1</sup>) indicated hydrophilicity. The ratio of hydrophobicity to hydrophilicity determined the potential wettability index (<xref ref-type="bibr" rid="B61">61</xref>).</p>
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<mml:mi>I</mml:mi>
<mml:mo>=</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mfrac>
<mml:mi>A</mml:mi>
<mml:mi>B</mml:mi>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<p>The aromaticity index was calculated based on the reflectance values of aliphatic bands ranging from 3000 to 2800 cm<sup>&#x2212;1</sup> (AL) and the aromatic band at 1520 cm<sup>&#x2212;1</sup> (AR) (<xref ref-type="bibr" rid="B61">61</xref>).</p>
<disp-formula>
<mml:math display="block" id="M5">
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>A</mml:mi>
<mml:mi>R</mml:mi>
<mml:mo>=</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mfenced>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>L</mml:mi>
<mml:mo>+</mml:mo>
<mml:mi>A</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<p>Water aggregate stability (WSA) was evaluated using the WSA index, following the procedure described by Nimmo and Perkins (<xref ref-type="bibr" rid="B62">62</xref>). Four grams of air-dried soil aggregates (with a diameter of 2&#x2013;5 mm) were sieved for 3 minutes in distilled water (using a 0.25-mm sieve) with a frequency of 35 cycles per minute and a vertical amplitude of 1.3 cm. The aggregates that remained on the sieve were then sieved (using the same frequency and amplitude) in a sodium hexametaphosphate solution (2 g L<sup>&#x2212;1</sup>) until only sand particles remained on the sieve. The aggregates that dissolved during wetting in water or hexametaphosphate solution were subsequently dried at 105&#xb0;C and weighed. The WSA index was calculated as follows:</p>
<disp-formula>
<mml:math display="block" id="M6">
<mml:mrow>
<mml:mi>W</mml:mi>
<mml:mi>S</mml:mi>
<mml:mi>A</mml:mi>
<mml:mo>=</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi>W</mml:mi>
<mml:mi>d</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mfenced>
<mml:mrow>
<mml:mi>W</mml:mi>
<mml:mi>d</mml:mi>
<mml:mi>s</mml:mi>
<mml:mo>+</mml:mo>
<mml:mi>W</mml:mi>
<mml:mi>d</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where Wds is the weight of aggregates dispersed in a sodium hexametaphosphate solution, and Wdw is the weight of aggregates dispersed in distilled water. An increase in the WSA value indicates an increase in soil aggregate stability</p>
<p>The carbon sequestration efficiency (CSE) was calculated as follows:</p>
<disp-formula>
<mml:math display="block" id="M7">
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>S</mml:mi>
<mml:mi>E</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mfenced>
<mml:mo>%</mml:mo>
</mml:mfenced>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>=</mml:mo>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>O</mml:mi>
<mml:mi>M</mml:mi>
<mml:mi>t</mml:mi>
<mml:mi>r</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>t</mml:mi>
<mml:mi>m</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>n</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>O</mml:mi>
<mml:mi>M</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>n</mml:mi>
<mml:mi>f</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>r</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mi>T</mml:mi>
<mml:mi>C</mml:mi>
<mml:mi>I</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2217;</mml:mo>
<mml:mn>100</mml:mn>
</mml:mrow>
</mml:math>
</disp-formula>
<p>C<sub>SOMtreatment</sub> represents the quantity of carbon present in the soil under the fertilised treatment. C<sub>SOMunfert</sub> signifies the amount of C in the soil under the unfertilised Con treatment. TCI denotes the total carbon input (t ha<sup>&#x2212;1</sup>) applied through organic fertilisers throughout the course of individual experiments Wang et&#xa0;al. (<xref ref-type="bibr" rid="B63">63</xref>).</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Statistical analysis</title>
<p>First, the principal components analysis (PCA) was performed in order to identify the most important variables. The results were also assessed using a one-way ANOVA to determine the influence of treatments and site on the SOM content and quality indicators. Tukey&#x2019;s test (<italic>p</italic>&lt;0.05) was used for <italic>post hoc</italic> comparisons. Linear regression was used to outline the relationship among selected variables (<italic>p</italic>&lt;0.05). All statistical evaluations were performed using Statistica software, version 12.3 (TIBCO, Palo Alto, CA, USA).</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<p>Principal component analysis (PCA) was performed to evaluate the most important indicators of SOM content and quality (<xref ref-type="table" rid="T4">
<bold>Table&#xa0;4</bold>
</xref>). Several criteria were used to select the appropriate number of PCs. First, the Kaiser criterion (eigenvalue &gt; 0.1) and cumulative variance exceeding 70% were applied. This resulted in three principal components (PCs). We will focus only on PC1 and PC2 as no indicator is correlated with PC3 by a coefficient higher than 0.7 or lower than -0.7. PC1 is correlated with the carbon in soil organic matter (C<sub>SOM</sub>), carbon in fulvic acids (C<sub>FA</sub>), easily extractable glomalin/C<sub>SOM</sub> ratio (EEG/C<sub>SOM</sub>), total glomalin/C<sub>SOM</sub> ratio (TG/C<sub>SOM</sub>), potential wettability index (PWI), and index of aromaticity (iAR). PC2 is correlated with the carbon in humic acids (C<sub>HA</sub>), humification index (HI), and TG. These principal components are responsible for 65.81% of the total variance within our data.</p>
<table-wrap id="T4" position="float">
<label>Table&#xa0;4</label>
<caption>
<p>Correlation of principal components and individual SOM content and quality indicators.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">PC/Indicator</th>
<th valign="middle" align="center">PC1</th>
<th valign="middle" align="center">PC2</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="center">C<sub>SOM</sub> (%)</td>
<td valign="middle" align="center">
<bold>-0.937</bold>
</td>
<td valign="middle" align="center">-0.200</td>
</tr>
<tr>
<td valign="middle" align="center">C<sub>SOM</sub>/N<sub>T</sub>
</td>
<td valign="middle" align="center">-0.372</td>
<td valign="middle" align="center">-0.066</td>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HS</sub> (%)</td>
<td valign="middle" align="center">-0.691</td>
<td valign="middle" align="center">-0.326</td>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HA</sub> (%)</td>
<td valign="middle" align="center">-0.286</td>
<td valign="middle" align="center">
<bold>-0.865</bold>
</td>
</tr>
<tr>
<td valign="middle" align="center">C<sub>FA</sub> (%)</td>
<td valign="middle" align="center">
<bold>-0.863</bold>
</td>
<td valign="middle" align="center">-0.114</td>
</tr>
<tr>
<td valign="middle" align="center">HA</td>
<td valign="middle" align="center">0.630</td>
<td valign="middle" align="center">-0.582</td>
</tr>
<tr>
<td valign="middle" align="center">HR</td>
<td valign="middle" align="center">0.264</td>
<td valign="middle" align="center">-0.499</td>
</tr>
<tr>
<td valign="middle" align="center">HI</td>
<td valign="middle" align="center">0.555</td>
<td valign="middle" align="center">
<bold>-0.724</bold>
</td>
</tr>
<tr>
<td valign="middle" align="center">EEG (mg kg<sup>-1</sup>)</td>
<td valign="middle" align="center">0.687</td>
<td valign="middle" align="center">-0.346</td>
</tr>
<tr>
<td valign="middle" align="center">TG (mg kg<sup>-1</sup>)</td>
<td valign="middle" align="center">0.127</td>
<td valign="middle" align="center">
<bold>-0.857</bold>
</td>
</tr>
<tr>
<td valign="middle" align="center">EEG/TG (%)</td>
<td valign="middle" align="center">0.452</td>
<td valign="middle" align="center">0.612</td>
</tr>
<tr>
<td valign="middle" align="center">EEG/C<sub>SOM</sub> (%)</td>
<td valign="middle" align="center">
<bold>0.954</bold>
</td>
<td valign="middle" align="center">-0.052</td>
</tr>
<tr>
<td valign="middle" align="center">TG/C<sub>SOM</sub> (%)</td>
<td valign="middle" align="center">
<bold>0.846</bold>
</td>
<td valign="middle" align="center">-0.397</td>
</tr>
<tr>
<td valign="middle" align="center">PWI</td>
<td valign="middle" align="center">
<bold>-0.870</bold>
</td>
<td valign="middle" align="center">-0.328</td>
</tr>
<tr>
<td valign="middle" align="center">iAR</td>
<td valign="middle" align="center">
<bold>-0.848</bold>
</td>
<td valign="middle" align="center">-0.341</td>
</tr>
<tr>
<td valign="middle" align="center">WSA</td>
<td valign="middle" align="center">0.020</td>
<td valign="middle" align="center">-0.041</td>
</tr>
<tr>
<td valign="middle" align="center">Eigenvalue</td>
<td valign="middle" align="center">6.89</td>
<td valign="middle" align="center">3.64</td>
</tr>
<tr>
<td valign="middle" align="center">Variance (%)</td>
<td valign="middle" align="center">43.06</td>
<td valign="middle" align="center">22.75</td>
</tr>
<tr>
<td valign="middle" align="center">Cumulative variance (%)</td>
<td valign="middle" align="center">43.06</td>
<td valign="middle" align="center">65.81</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Bold values indicate results either &gt; 0.7 or &lt; - 0.7; <italic>n</italic>=56. C<sub>SOM</sub>, carbon is soil organic matter; N<sub>T</sub>, total soil nitrogen; C<sub>SOM</sub>/N<sub>T</sub>, carbon is soil organic matter/total soil nitrogen ratio; C<sub>HS</sub>, carbon is humic substances; C<sub>HA</sub>, carbon in humic acids; C<sub>FA</sub>, carbon in fulvic acids; HA, the degree of polymerisation (C<sub>HA</sub>/C<sub>FA</sub>); HR, the humification rate [(C<sub>FA</sub> + C<sub>HA</sub>)/C<sub>SOM</sub>]; HI, the index of humification (C<sub>HA</sub>/C<sub>SOM</sub>); EEG, easily extractable glomalin; TG, total glomalin; EEG/TG, easily extractable/total glomalin ratio; EEG/C<sub>SOM</sub>, easily extractable/carbon in soil organic matter ratio; TG/C<sub>SOM</sub>, total glomalin/carbon in soil organic matter ratio; PWI, potential wettability index; iAR, index of aromaticity; WSA, water-stability of aggregates.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<sec id="s3_1">
<label>3.1</label>
<title>The winter wheat grain yields</title>
<p>The aim of this work was not to monitor yields in individual treatments. The focus was on changes in the content and quality of soil organic matter (SOM). The included yields of winter wheat grain are provided only to illustrate the situation in our experiments. These yields roughly represent the influence of treatments on the yields (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). The average yield of wheat grain (site A) in the control treatment was 4.82 t DM ha<sup>-1</sup>. In comparison, site B produced 3.35 t DM ha<sup>-1</sup> in the control treatment. The experiment is based on the application of 330 kg N ha<sup>-1</sup> every three years to all treatments, except the unfertilised control, SS3 (990 kg N ha<sup>-1</sup>), and mineral nitrogen + straw (N+St) treatment. The N+St treatment received a higher dose of nitrogen due to the straw incorporation into potatoes (site A) or maize (site B) (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). The <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref> shows that the differences among the fertilised treatments were non-significant.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Relative yields of winter wheat at Site A and B from years 1997&#x2013;2022. Different letters describe statistically significant differences among treatments for each site individually. Turkey HSD test <italic>p</italic>&lt;0.05; <italic>n</italic>=24.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fsoil-05-1540137-g001.tif"/>
</fig>
<p>The dynamics of yields throughout the experiment are shown in <xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2</bold>
</xref> and 3. For simplicity, the yields were calculated as three-year averages per treatment. The control treatment consistently provided the lowest yields. There was an increasing trend in differences between the control and fertilised treatments over the course of the experiment (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2</bold>
</xref>, <xref ref-type="fig" rid="f3">
<bold>3</bold>
</xref>). The control treatment yields stayed roughly the same throughout the experiment on both sites. The yields of fertiliser treatments had an increasing trend (y=0.3463x+5.7098) from the initial values between 5-7 t ha<sup>-1</sup> year<sup>-1</sup> on site A (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). The yields of fertiliser treatments on site B also had an increasing trend (y=0.1209x+4.7936) from 5-6 t ha<sup>-1</sup> (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). The influence of periods was also notable. Both sites indicated increasing yields (linear average). The increasing yield over the course of the experiment is likely due to the change in wheat variety. The new varieties provide a higher yield potential.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Trend in average winter wheat yields at site A. *** significant trend at <italic>p</italic>&lt;0.001. Yields for a period were calculated as an average of the values for the individual treatment. The "Average" line was calculated as an average of all treatments in the selected period (control included). Different letters describe significant differences among periods for trend values of all treatments (<italic>n</italic>=24). The red dotted line is the linear trend for the average. Year 97 corresponds to the first year of the experiment. CI, confidence interval. Cont, control; SS1, sewage sludge; SS3, extreme dose of sewage sludge; F1, farmyard manure; F1/2 + N1/2, half a dose of farmyard manure and half a dose of mineral nitrogen fertiliser; N, mineral nitrogen fertiliser; N + St, N and straw application.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fsoil-05-1540137-g002.tif"/>
</fig>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Trend in average winter wheat yields at site B. * significant trend at <italic>p</italic>&lt;0.05. Yields for a period a were calculated as an average of the values for the individual treatment. The "Average" line was calculated as an average of all treatments in the selected period (control included). Different letters describe significant differences among periods for trend values of all treatments (<italic>n</italic>=24). The red dotted line is the linear trend for the average. Year 97 corresponds to the first year of the experiment. CI, confidence interval. Cont, control; SS1, sewage sludge; SS3, extreme dose of sewage sludge; F1, farmyard manure; F1/2 + N1/2-half a dose of farmyard manure and half a dose of mineral nitrogen fertiliser; N, mineral nitrogen fertiliser; N+ St, N and straw application.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fsoil-05-1540137-g003.tif"/>
</fig>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Carbon sequestration efficiency</title>
<p>The carbon sequestration efficiency (CSE) was based on the average bulk density of both sites (the difference among sites is minimal) and the average amount of supplied carbon by farmyard manure (the difference among sites is minimal also). The CSE values are presented in <xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>. The values of CSE decrease with the increase in the amount of carbon (C) supplied. The high dose of sewage sludge (SS3) treatment resulted in a lower CSE value (38.6%) than the normal dose of sewage sludge (SS1) treatment (45.6%). A similar trend was also observed among the farmyard manure (F1) (35.0%) and half a dose of farmyard manure and half a dose of mineral fertiliser (F1/2+N1/2) treatments (41.4%). The lowest value was determined for the N+St treatment (34.1%) although the&#xa0;amount of supplied carbon was lowest on this treatment (19.26 t&#xa0;C ha<sup>-1</sup> over 27 years).</p>
<table-wrap id="T5" position="float">
<label>Table&#xa0;5</label>
<caption>
<p>The influence of treatment on the SOM content and quality indicators.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Variable/</th>
<th valign="middle" align="center">Cont</th>
<th valign="middle" align="center">SS1</th>
<th valign="middle" align="center">SS3</th>
<th valign="middle" align="center">F1</th>
<th valign="middle" align="center">F1/2+</th>
<th valign="middle" align="center">N</th>
<th valign="middle" align="center">N+ST</th>
</tr>
<tr>
<th valign="middle" align="center">treatment</th>
<th valign="middle" align="center"/>
<th valign="middle" align="center"/>
<th valign="middle" align="center"/>
<th valign="middle" align="center"/>
<th valign="middle" align="center">N1/2</th>
<th valign="middle" align="center"/>
<th valign="middle" align="center"/>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" rowspan="2" align="center">C<sub>SOM</sub> (%)</td>
<td valign="middle" align="center">1.03 a</td>
<td valign="middle" align="center">1.24 a</td>
<td valign="middle" align="center">1.58 b</td>
<td valign="middle" align="center">1.33 ab</td>
<td valign="middle" align="center">1.21 a</td>
<td valign="middle" align="center">1.11 a</td>
<td valign="middle" align="center">1.18 a</td>
</tr>
<tr>
<td valign="middle" align="center">(0.97, 1.08)</td>
<td valign="middle" align="center">(1.13, 1.36)</td>
<td valign="middle" align="center">(1.33, 1.83)</td>
<td valign="middle" align="center">(1.15, 1.52)</td>
<td valign="middle" align="center">(1.05, 1.37)</td>
<td valign="middle" align="center">(0.99, 1.24)</td>
<td valign="middle" align="center">(0.937, 1.41)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">C<sub>SOM</sub>/N<sub>T</sub>
</td>
<td valign="middle" align="center">9.34</td>
<td valign="middle" align="center">9.37 ab</td>
<td valign="middle" align="center">9.22 a</td>
<td valign="middle" align="center">9.73 b</td>
<td valign="middle" align="center">9.74 b</td>
<td valign="middle" align="center">9.40 ab</td>
<td valign="middle" align="center">9.54 ab</td>
</tr>
<tr>
<td valign="middle" align="center">(9.10, 9.58)</td>
<td valign="middle" align="center">(9.24, 9.50)</td>
<td valign="middle" align="center">(9.05, 9.39)</td>
<td valign="middle" align="center">(9.45, 10.0)</td>
<td valign="middle" align="center">(9.53, 9.94)</td>
<td valign="middle" align="center">(9.07, 9.74)</td>
<td valign="middle" align="center">(9.19, 9.90)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">C<sub>HS</sub> (%)</td>
<td valign="middle" align="center">0.267 ab</td>
<td valign="middle" align="center">0.312 a</td>
<td valign="middle" align="center">0.415 b</td>
<td valign="middle" align="center">0.317 a</td>
<td valign="middle" align="center">0.287 a</td>
<td valign="middle" align="center">0.297 a</td>
<td valign="middle" align="center">0.310 a</td>
</tr>
<tr>
<td valign="middle" align="center">(0.226, 0.311)</td>
<td valign="middle" align="center">(0.227, 0.348)</td>
<td valign="middle" align="center">(0.367, 0.463)</td>
<td valign="middle" align="center">(0.295, 0.338)</td>
<td valign="middle" align="center">(0.269, 0.305)</td>
<td valign="middle" align="center">(0.291, 0.304)</td>
<td valign="middle" align="center">(0.286, 0.333)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">C<sub>HA</sub> (%)</td>
<td valign="middle" align="center">0.107 ab</td>
<td valign="middle" align="center">0.136 abc</td>
<td valign="middle" align="center">0.147 c</td>
<td valign="middle" align="center">0.179 d</td>
<td valign="middle" align="center">0.137 bc</td>
<td valign="middle" align="center">0.105 a</td>
<td valign="middle" align="center">0.138 bc</td>
</tr>
<tr>
<td valign="middle" align="center">(0.089, 0.126)</td>
<td valign="middle" align="center">(0.125, 0.148)</td>
<td valign="middle" align="center">(0.125, 0.169)</td>
<td valign="middle" align="center">(0.164, 0.194)</td>
<td valign="middle" align="center">(0.114, 0.160)</td>
<td valign="middle" align="center">(0.094, 0.117)</td>
<td valign="middle" align="center">(0.125, 0.150)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">C<sub>FA</sub> (%)</td>
<td valign="middle" align="center">0.142</td>
<td valign="middle" align="center">0.154</td>
<td valign="middle" align="center">0.174</td>
<td valign="middle" align="center">0.162</td>
<td valign="middle" align="center">0.123</td>
<td valign="middle" align="center">0.120</td>
<td valign="middle" align="center">0.140</td>
</tr>
<tr>
<td valign="middle" align="center">(0.137, 0.148)</td>
<td valign="middle" align="center">(0.117, 0.191)</td>
<td valign="middle" align="center">(0.136, 0.211)</td>
<td valign="middle" align="center">(0.135, 0.189)</td>
<td valign="middle" align="center">(0.090, 0.157)</td>
<td valign="middle" align="center">(0.103, 0.136)</td>
<td valign="middle" align="center">(0.097, 0.182)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">HA</td>
<td valign="middle" align="center">0.754 a</td>
<td valign="middle" align="center">0.883 ab</td>
<td valign="middle" align="center">0.845 ab</td>
<td valign="middle" align="center">1.105 ab</td>
<td valign="middle" align="center">1.114 b</td>
<td valign="middle" align="center">0.875 ab</td>
<td valign="middle" align="center">0.986 ab</td>
</tr>
<tr>
<td valign="middle" align="center">(0.611, 0.898)</td>
<td valign="middle" align="center">(0.696, 1.22)</td>
<td valign="middle" align="center">(0.673, 1.11)</td>
<td valign="middle" align="center">(0.970, 1.29)</td>
<td valign="middle" align="center">(0.970, 1.35)</td>
<td valign="middle" align="center">(0.795, 0.990)</td>
<td valign="middle" align="center">(0.790, 1.41)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">HR</td>
<td valign="middle" align="center">0.242 ab</td>
<td valign="middle" align="center">0.234 ab</td>
<td valign="middle" align="center">0.203 a</td>
<td valign="middle" align="center">0.256 b</td>
<td valign="middle" align="center">0.215 a</td>
<td valign="middle" align="center">0.203 a</td>
<td valign="middle" align="center">0.236 ab</td>
</tr>
<tr>
<td valign="middle" align="center">(0.217, 0.272)</td>
<td valign="middle" align="center">(0.213, 0.254)</td>
<td valign="middle" align="center">(0.189, 0.220)</td>
<td valign="middle" align="center">(0.233, 0.285)</td>
<td valign="middle" align="center">(0.192, 0.233)</td>
<td valign="middle" align="center">(0.192, 0.213)</td>
<td valign="middle" align="center">(0.204, 0.275)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">HI</td>
<td valign="middle" align="center">0.104 ab</td>
<td valign="middle" align="center">0.110 ab</td>
<td valign="middle" align="center">0.093 a</td>
<td valign="middle" align="center">0.135 b</td>
<td valign="middle" align="center">0.113 ab</td>
<td valign="middle" align="center">0.095 a</td>
<td valign="middle" align="center">0.117 ab</td>
</tr>
<tr>
<td valign="middle" align="center">(0.083, 0.128)</td>
<td valign="middle" align="center">(0.092, 0.131)</td>
<td valign="middle" align="center">(0.077, 0.113)</td>
<td valign="middle" align="center">(0.117, 0.156)</td>
<td valign="middle" align="center">(0.102, 0.124)</td>
<td valign="middle" align="center">(0.087, 0.103)</td>
<td valign="middle" align="center">(0.098, 0.147)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">EEG<break/>(mg kg<sup>-1</sup>)</td>
<td valign="middle" align="center">482</td>
<td valign="middle" align="center">512</td>
<td valign="middle" align="center">524</td>
<td valign="middle" align="center">511</td>
<td valign="middle" align="center">528</td>
<td valign="middle" align="center">511</td>
<td valign="middle" align="center">530</td>
</tr>
<tr>
<td valign="middle" align="center">(404, 560)</td>
<td valign="middle" align="center">(461, 564)</td>
<td valign="middle" align="center">(470, 578)</td>
<td valign="middle" align="center">(466, 557)</td>
<td valign="middle" align="center">(475, 581)</td>
<td valign="middle" align="center">(467, 555)</td>
<td valign="middle" align="center">(460, 599)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">TG<break/>(mg kg<sup>-1</sup>)</td>
<td valign="middle" align="center">1443 a</td>
<td valign="middle" align="center">1744 ab</td>
<td valign="middle" align="center">1898 b</td>
<td valign="middle" align="center">1940 b</td>
<td valign="middle" align="center">1958 b</td>
<td valign="middle" align="center">1558 a</td>
<td valign="middle" align="center">1706 ab</td>
</tr>
<tr>
<td valign="middle" align="center">(1203, 1684)</td>
<td valign="middle" align="center">(1608, 1881)</td>
<td valign="middle" align="center">(1738, 2058)</td>
<td valign="middle" align="center">(1803, 2076)</td>
<td valign="middle" align="center">(1825, 2091)</td>
<td valign="middle" align="center">(1345, 1770)</td>
<td valign="middle" align="center">(1613, 1798)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">EEG/TG (%)</td>
<td valign="middle" align="center">33.4 c</td>
<td valign="middle" align="center">29.4 abc</td>
<td valign="middle" align="center">27.6 ab</td>
<td valign="middle" align="center">26.3 a</td>
<td valign="middle" align="center">27.0 a</td>
<td valign="middle" align="center">32.8 bc</td>
<td valign="middle" align="center">31.1 ab</td>
</tr>
<tr>
<td valign="middle" align="center">(31.6, 35.5)</td>
<td valign="middle" align="center">(26.4, 35.5)</td>
<td valign="middle" align="center">(24.7, 30.7)</td>
<td valign="middle" align="center">(24.5, 28.3)</td>
<td valign="middle" align="center">(23.1, 31.4)</td>
<td valign="middle" align="center">(29.6, 37.0)</td>
<td valign="middle" align="center">(27.9, 34.0)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">EEG/C<sub>SOM</sub> (%)</td>
<td valign="middle" align="center">4.68</td>
<td valign="middle" align="center">4.13</td>
<td valign="middle" align="center">3.32</td>
<td valign="middle" align="center">3.84</td>
<td valign="middle" align="center">4.36</td>
<td valign="middle" align="center">4.60</td>
<td valign="middle" align="center">4.49</td>
</tr>
<tr>
<td valign="middle" align="center">(3.78, 5.71)</td>
<td valign="middle" align="center">(3.46, 4.93)</td>
<td valign="middle" align="center">(2.64, 4.33)</td>
<td valign="middle" align="center">(3.12, 4.84)</td>
<td valign="middle" align="center">(3.52, 5.55)</td>
<td valign="middle" align="center">(3.84, 5.81)</td>
<td valign="middle" align="center">(3.34, 6.44)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">TG/C<sub>SOM</sub> (%)</td>
<td valign="middle" align="center">14.0</td>
<td valign="middle" align="center">14.1</td>
<td valign="middle" align="center">12.0</td>
<td valign="middle" align="center">14.6</td>
<td valign="middle" align="center">16.2</td>
<td valign="middle" align="center">14.0</td>
<td valign="middle" align="center">14.5</td>
</tr>
<tr>
<td valign="middle" align="center">(11.3, 17.0)</td>
<td valign="middle" align="center">(11.8, 16.7)</td>
<td valign="middle" align="center">(9.76, 15.4)</td>
<td valign="middle" align="center">(12.2, 17.8)</td>
<td valign="middle" align="center">(14.4, 18.7)</td>
<td valign="middle" align="center">(11.0, 17.9)</td>
<td valign="middle" align="center">(11.6, 19.3)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">PWI</td>
<td valign="middle" align="center">0.010 a</td>
<td valign="middle" align="center">0.016 bc</td>
<td valign="middle" align="center">0.019 c</td>
<td valign="middle" align="center">0.016 bc</td>
<td valign="middle" align="center">0.014 abc</td>
<td valign="middle" align="center">0.012 ab</td>
<td valign="middle" align="center">0.014 ab</td>
</tr>
<tr>
<td valign="middle" align="center">(0.010, 0.011)</td>
<td valign="middle" align="center">(0.013, 0.018)</td>
<td valign="middle" align="center">(0.016, 0.022)</td>
<td valign="middle" align="center">(0.013, 0.019)</td>
<td valign="middle" align="center">(0.011, 0.017)</td>
<td valign="middle" align="center">(0.010, 0.015)</td>
<td valign="middle" align="center">(0.011, 0.017)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">iAR</td>
<td valign="middle" align="center">0.022 a</td>
<td valign="middle" align="center">0.032 bc</td>
<td valign="middle" align="center">0.037 c</td>
<td valign="middle" align="center">0.031 bc</td>
<td valign="middle" align="center">0.028 ab</td>
<td valign="middle" align="center">0.024 ab</td>
<td valign="middle" align="center">0.027 ab</td>
</tr>
<tr>
<td valign="middle" align="center">(0.020, 0.023)</td>
<td valign="middle" align="center">(0.027, 0.039)</td>
<td valign="middle" align="center">(0.033, 0.042)</td>
<td valign="middle" align="center">(0.025, 0.036)</td>
<td valign="middle" align="center">(0.023, 0.033)</td>
<td valign="middle" align="center">(0.020, 0.029)</td>
<td valign="middle" align="center">(0.021, 0.033)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="center">WSA</td>
<td valign="middle" align="center">0.417 a</td>
<td valign="middle" align="center">0.456 ab</td>
<td valign="middle" align="center">0.391 a</td>
<td valign="middle" align="center">0.516 b</td>
<td valign="middle" align="center">0.399 a</td>
<td valign="middle" align="center">0.419 a</td>
<td valign="middle" align="center">0.438 ab</td>
</tr>
<tr>
<td valign="middle" align="center">(0.373, 0.462)</td>
<td valign="middle" align="center">(0.376, 0.537)</td>
<td valign="middle" align="center">(0.364, 0.419)</td>
<td valign="middle" align="center">(0.372, 0.661)</td>
<td valign="middle" align="center">(0.340, 0.457)</td>
<td valign="middle" align="center">(0.343, 0.495)</td>
<td valign="middle" align="center">(0.368, 0.508)</td>
</tr>
<tr>
<td valign="middle" align="center">CSE (%)</td>
<td valign="middle" align="center">&#x2013;</td>
<td valign="middle" align="center">45.6</td>
<td valign="middle" align="center">38.6</td>
<td valign="middle" align="center">35.0</td>
<td valign="middle" align="center">41.4</td>
<td valign="middle" align="center">&#x2013;</td>
<td valign="middle" align="center">34.1</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Different letters describe statistically significant differences between treatments. Tukey&#xb4;s HSD <italic>post hoc</italic> test. <italic>p</italic>&lt;0.05. <italic>n</italic>=8. Rows without letters describe statistically insignificant differences. 95% confidence interval (blue) is represented underneath each value. C<sub>SOM</sub>, carbon is soil organic matter; N<sub>T</sub>, total soil nitrogen; C<sub>SOM</sub>/N<sub>T</sub>,  carbon is soil organic matter/total soil nitrogen ratio; C<sub>HS</sub>, carbon is humic substances; C<sub>HA</sub>, carbon in humic acids; C<sub>FA</sub>, carbon in fulvic acids; HA, the degree of polymerisation (C<sub>HA</sub>/C<sub>FA</sub>); HR, the humification rate [(C<sub>FA</sub> + C<sub>HA</sub>)/C<sub>SOM</sub>]; HI, the index of humification (C<sub>HA</sub>/C<sub>SOM</sub>); EEG, easily extractable glomalin; TG, total glomalin; EEG/TG, easily extractable/total glomalin ratio; EEG/C<sub>SOM</sub>, easily extractable/carbon in soil organic matter ratio; TG/C<sub>SOM</sub>, total glomalin/carbon in soil organic matter ratio; PWI, potential wettability index; iAR, index of aromaticity; WSA, water-stability of aggregates.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>The effect of fertiliser on SOM content and quality indicators</title>
<p>The indicators of SOM content and quality for individual sites represent the average of all the treatments (<xref ref-type="table" rid="T6">
<bold>Table&#xa0;6</bold>
</xref>). The presented values represent the average of all treatments. The content of C<sub>SOM</sub> was lower on site A (1.07%) in comparison with site B (1.41%); however, the degree of polymerisation (HA) and glomalin content suggest better SOM quality on site A.</p>
<table-wrap id="T6" position="float">
<label>Table&#xa0;6</label>
<caption>
<p>The influence of site on the SOM content and quality indicators.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Site/indicator</th>
<th valign="middle" align="center">C<sub>SOM</sub> (%)</th>
<th valign="middle" align="center">C<sub>SOM</sub>/N<sub>T</sub>
</th>
<th valign="middle" align="center">C<sub>HS</sub> (%)</th>
<th valign="middle" align="center">C<sub>HA</sub> (%)</th>
<th valign="middle" align="center">C<sub>FA</sub> (%)</th>
<th valign="middle" align="center">HA</th>
<th valign="middle" align="center">HR</th>
<th valign="middle" align="center">HI</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="center">A</td>
<td valign="middle" align="center">1.07 a</td>
<td valign="middle" align="center">9.32 a</td>
<td valign="middle" align="center">0.299 a</td>
<td valign="middle" align="center">0.133 a</td>
<td valign="middle" align="center">0.117 a</td>
<td valign="middle" align="center">1.14 b</td>
<td valign="middle" align="center">0.234 a</td>
<td valign="middle" align="center">0.126 b</td>
</tr>
<tr>
<td valign="middle" align="center">B</td>
<td valign="middle" align="center">1.41 b</td>
<td valign="middle" align="center">9.63 b</td>
<td valign="middle" align="center">0.331 b</td>
<td valign="middle" align="center">0.138 a</td>
<td valign="middle" align="center">0.174 b</td>
<td valign="middle" align="center">0.793 a</td>
<td valign="middle" align="center">0.226 a</td>
<td valign="middle" align="center">0.097 a</td>
</tr>
</tbody>
<tbody>
<tr>
<th valign="middle" align="center">Site/indicator</th>
<th valign="middle" align="center">EEG<break/>(mg kg<sup>-1</sup>)</th>
<th valign="middle" align="center">TG<break/>(mg kg<sup>-1</sup>)</th>
<th valign="middle" align="center">EEG/<break/>TG (%)</th>
<th valign="middle" align="center">EEG/<break/>C<sub>SOM</sub> (%)</th>
<th valign="middle" align="center">TG/C<sub>SOM</sub> (%)</th>
<th valign="middle" align="center">WSA</th>
<th valign="middle" align="center">PWI</th>
<th valign="bottom" align="center"/>
</tr>
</tbody>
<tbody>
<tr>
<td valign="middle" align="center">A</td>
<td valign="middle" align="center">567 b</td>
<td valign="middle" align="center">1868 b</td>
<td valign="middle" align="center">29.9 a</td>
<td valign="middle" align="center">5.30 b</td>
<td valign="middle" align="center">17.7 b</td>
<td valign="middle" align="center">0.439 a</td>
<td valign="middle" align="center">0.012 a</td>
<td valign="bottom" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">B</td>
<td valign="middle" align="center">461 a</td>
<td valign="middle" align="center">1632 a</td>
<td valign="middle" align="center">28.2 a</td>
<td valign="middle" align="center">3.27 a</td>
<td valign="middle" align="center">11.6 a</td>
<td valign="middle" align="center">0.429 a</td>
<td valign="middle" align="center">0.017 b</td>
<td valign="bottom" align="center"/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Tukey&#xb4;s HSD <italic>post hoc</italic> test. <italic>p</italic>&lt;0.05. <italic>n</italic>=32. Different letters describe statistically significant differences between sites. C<sub>SOM</sub>, carbon is soil organic matter; N<sub>T</sub>, total soil nitrogen; C<sub>SOM</sub>/N<sub>T</sub>,  carbon is soil organic matter/total soil nitrogen ratio; C<sub>HS</sub>, carbon is humic substances; C<sub>HA</sub>, carbon in humic acids; C<sub>FA</sub>, carbon in fulvic acids; HA, the degree of polymerisation (C<sub>HA</sub>/C<sub>FA</sub>); HR, the humification rate [(C<sub>FA</sub> + C<sub>HA</sub>)/C<sub>SOM</sub>]; HI, the index of humification (C<sub>HA</sub>/C<sub>SOM</sub>); EEG, easily extractable glomalin; TG, total glomalin; EEG/TG, easily extractable/total glomalin ratio; EEG/C<sub>SOM</sub>, easily extractable/carbon in soil organic matter ratio; TG/C<sub>SOM</sub>, total glomalin/carbon in soil organic matter ratio; PWI, potential wettability index; iAR, index of aromaticity; WSA, water-stability of aggregates.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>The influence of individual treatments over the SOM content and quality indicators is displayed in <xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>. The results of both sites were averaged. A statistically significant increase in the SOM content happened only in the SS3 treatment that received 63.33 t C ha<sup>-1</sup> during the 27 years of the experiment. The C<sub>SOM</sub> content, especially on the SS1 and F1 treatments increased. The C<sub>SOM</sub> content on the SS1 and F1 treatments is 1.24 and 1.33%, respectively. This is in accord with the supplied amount of carbon (21.11 and 38.3 t C ha<sup>-1</sup> during 27 years into the SS1 and F1 treatments, respectively).The unfertilised treatment was observed with the lowest C<sub>SOM</sub> content (1.03%) and quality (C<sub>HA</sub>, HA). The low C<sub>SOM</sub> content is related to the lowest aboveground biomass yields as well as small root biomass. The F1 treatment produced a lower long-term yield (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1</bold>
</xref>-<xref ref-type="fig" rid="f3">
<bold>3</bold>
</xref>) in comparison to other fertiliser treatments (the difference is non-significant). However, it was one of the best treatments considering the content and quality of SOM. There was a clear trend in the increase in C<sub>SOM</sub>. Other than that, the C<sub>SOM</sub>/N<sub>T</sub> ratio was also increased, indicating an increased SOM quality. The C<sub>HA</sub> content and degree of polymerisation (HA) also increased significantly, further indicating an increase in the SOM quality. The fraction of stabilised and polymerized fraction of SOM becomes increased. This is expressed by an increase in: a) humification rate (HR); b) humification index (HI) (<xref ref-type="bibr" rid="B59">59</xref>, <xref ref-type="bibr" rid="B60">60</xref>).</p>
<p>There was a gradual increase in C<sub>SOM</sub> content in the mineral nitrogen (N) treatment in comparison with the control (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>). The SOM quality of the N treatment was described by several negative results. Specifically, the C<sub>HA</sub> content and the TG content were comparable to the control. The mineral nitrogen-only fertilisation causes faster mineralisation of stable SOM due to the priming effect, which in turn, reduces the C<sub>HA</sub> content and leads to the lowest humification index value.</p>
<p>There was an increase in the C<sub>SOM</sub> content on the N+St (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>) treatment compared to the control and N treatments. Despite lower carbon inputs in the soil, the CSE value (34.1%) is relatively high in comparison with the F1 treatment. The carbon input in the N+St treatment was almost the same as in the F1/2+N1/2 treatment, yet the CSE value for N+St treatment was lower. This points out the smaller stability of organic matter in straw in comparison with manure. In comparison with the SS1 treatment, the N+St produced a lower CSE value, than SS1 (45.6%). This could be a result of higher C<sub>SOM</sub> content on the SS1 treatment. With regard to the SOM quality indicators (C<sub>HA</sub>, HA, PWI, iAR, and EEG/TG), the SS1 and N+St treatments are almost identical.</p>
<p>The SS3 treatment was originally designed as a potential treatment for achieving a significant change in SOM content and quality. High carbon inputs (63.33 t ha<sup>-1</sup> over 27 years) resulted in an increased C<sub>SOM</sub> content. The substantially lower C/N ratio in sludge (7/1) and higher dose of N (990 kg N ha<sup>-1</sup> every three years) caused significantly lower carbon in soil organic matter/total nitrogen (C<sub>SOM</sub>/N<sub>T</sub>) ratio in the soil (9.29/1). The higher dose of carbon in the sludge caused an increase in C<sub>HA</sub> content but with an overall lower quality of C<sub>SOM</sub> in comparison with the manure. The humification index on this treatment is significantly reduced.</p>
</sec>
<sec id="s3_4">
<label>3.4</label>
<title>The effect of fertiliser treatment on the glomalin content</title>
<p>No significant effect of fertiliser treatment on the EEG content was determined (<italic>p</italic>&lt;0.05). The EEG content ranged between 482 and 530 mg (mg kg<sup>-1</sup>) based on the treatment (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>). A significant influence of treatment (<italic>p</italic>&lt;0.05) was determined on the total glomalin (TG) content. The lowest TG content was on the Cont treatment (1443 mg kg<sup>-1</sup>). The EEG/carbon in soil organic matter (EEG/C<sub>SOM</sub>) ratio was between 3.32 and 4.68% (SS3 and Cont, respectively). The TG/C<sub>SOM</sub> ratio was between 12.0 and 16.2% (SS3 and F1/2+N1/2, respectively). This means, that there is more pronounced increase in the C<sub>SOM</sub> content on the SS3 treatment, that is not followed by appropriate increase in its quality (glomalin content).</p>
<p>The EEG/TG ratio was another selected SOM quality indicator. The highest value was monitored on the Cont treatment (33.4%), where the lowest degree of polymerisation (HA) was detected. The lowest value was present on the SS1 treatment (26.3%), where the HA value was the lowest. The EEG/TG value was mostly influenced by the changes in the TG content, as the EEG content was not significantly influenced by the fertiliser treatment.</p>
<p>Mutual connection among the SOM content and quality indicators and methods for their estimation are presented in <xref ref-type="table" rid="T7">
<bold>Table&#xa0;7</bold>
</xref>. The EEG content is lightly, negatively related to the C<sub>SOM</sub> content (R<sup>2</sup> = 0.207, <italic>p</italic>&lt;0.001), C<sub>FA</sub> (R<sup>2</sup> = 0.327, <italic>p</italic>&lt;0.001) and C<sub>SOM</sub>/N<sub>T</sub> (R<sup>2</sup> = 0.172; p&lt;0.01) (<italic>n</italic>=56). The EEG content was positively related to the degree of polymerisation (R<sup>2</sup> = 0.403, <italic>n</italic>=56, <italic>p</italic>&lt;0.001). However, the TG content is positively related only to the content of C<sub>HA</sub> (R<sup>2</sup> = 0.298), and degree of polymerisation (R<sup>2</sup> = 0.327, <italic>n</italic>=56, <italic>p</italic>&lt;0.001). The EEG/TG ratio was significantly negatively related to the C<sub>SOM</sub> content (R<sup>2</sup> = 0.218), C<sub>HS</sub> (R<sup>2</sup> = 0.263), and C<sub>SOM</sub>/N<sub>T</sub> (R<sup>2</sup> = 0.187) (<italic>n</italic>=56, <italic>p</italic>&lt;0.001). It is important to note, that some of these relationships have rather wide confidence intervals (marked in <xref ref-type="table" rid="T7">
<bold>Table&#xa0;7</bold>
</xref>), which suggests, that at our number of observations (<italic>n</italic>=56), these trends might be real, but with lower certainty of the exact value of regression coefficient.</p>
<table-wrap id="T7" position="float">
<label>Table&#xa0;7</label>
<caption>
<p>Regression of selected SOM quality indicators with glomalin content, water-stability of aggregates and potential wettability index.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">X</th>
<th valign="middle" align="center">Y</th>
<th valign="middle" align="center">Regression</th>
<th valign="middle" align="center">R<sup>2</sup>
</th>
<th valign="middle" align="center">X</th>
<th valign="middle" align="center">Y</th>
<th valign="middle" align="center">Regression</th>
<th valign="middle" align="center">R<sup>2</sup>
</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="center">C<sub>SOM</sub>
</td>
<td valign="middle" align="center">EEG</td>
<td valign="middle" align="center">y = -118.33x + 660.71</td>
<td valign="middle" align="center">0.207 ***</td>
<td valign="middle" align="center">HA</td>
<td valign="middle" align="center">EEG</td>
<td valign="middle" align="center">y = 155.15x + 361.42</td>
<td valign="middle" align="center">0.403 ***</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-238.8, 1.80)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(50.9, 259)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>SOM</sub>
</td>
<td valign="middle" align="center">TG</td>
<td valign="middle" align="center">y = 69.123x + 1663.9</td>
<td valign="middle" align="center">0.005</td>
<td valign="middle" align="center">HA</td>
<td valign="middle" align="center">TG</td>
<td valign="middle" align="center">y = 549.35x + 1209.3</td>
<td valign="middle" align="center">0.327 ***</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-459, 598)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(114, 984)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>SOM</sub>
</td>
<td valign="middle" align="center">EEG/TG</td>
<td valign="middle" align="center">y = -7.9588x + 39.681</td>
<td valign="middle" align="center">0.218 ***</td>
<td valign="middle" align="center">HA</td>
<td valign="middle" align="center">EEG/TG</td>
<td valign="middle" align="center">y = -1.0312x + 30.827</td>
<td valign="middle" align="center">0.004</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-15.8, -0.140)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-9.85, 7.79)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>SOM</sub>
</td>
<td valign="middle" align="center">WSA</td>
<td valign="middle" align="center">y = -0.0041x + 0.439</td>
<td valign="middle" align="center">0.001</td>
<td valign="middle" align="center">HA</td>
<td valign="middle" align="center">WSA</td>
<td valign="middle" align="center">y = 0.0475x + 0.3872</td>
<td valign="middle" align="center">0.018</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-0.202, 0.194)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-0.149, 0.244)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>SOM</sub>
</td>
<td valign="middle" align="center">PWI</td>
<td valign="middle" align="center">y = 0.0137x - 0.0025</td>
<td valign="middle" align="center">0.798 ***</td>
<td valign="middle" align="center">HA</td>
<td valign="middle" align="center">PWI</td>
<td valign="middle" align="center">y = -0.0043x + 0.0187</td>
<td valign="middle" align="center">0.089</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(0.010, 0.017)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-0.012, 0.003)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HS</sub>
</td>
<td valign="middle" align="center">EEG</td>
<td valign="middle" align="center">y = -151.59x + 561.78</td>
<td valign="middle" align="center">0.0163</td>
<td valign="middle" align="center">C<sub>SOM</sub>/N<sub>T</sub>
</td>
<td valign="middle" align="center">EEG</td>
<td valign="middle" align="center">y = -80.25x + 1274.5</td>
<td valign="middle" align="center">0.172 **</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-285, -17.8)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-203, 42.5)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HS</sub>
</td>
<td valign="middle" align="center">TG</td>
<td valign="middle" align="center">y = 1167.9x + 1381.5</td>
<td valign="middle" align="center">0.0625</td>
<td valign="middle" align="center">C<sub>SOM</sub>/N<sub>T</sub>
</td>
<td valign="middle" align="center">TG</td>
<td valign="middle" align="center">y = -2.161x + 1770</td>
<td valign="middle" align="center">0.000</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(654, 1681)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-532, 528)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HS</sub>
</td>
<td valign="middle" align="center">EEG/TG</td>
<td valign="middle" align="center">y = -11.239x + 7.9042</td>
<td valign="middle" align="center">0.263 ***</td>
<td valign="middle" align="center">C<sub>SOM</sub>/N<sub>T</sub>
</td>
<td valign="middle" align="center">EEG/TG</td>
<td valign="middle" align="center">y = -1.5422x + 18.977</td>
<td valign="middle" align="center">0.187 **</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-19.3, -3.14)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-9.84, 6.76)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HS</sub>
</td>
<td valign="middle" align="center">WSA</td>
<td valign="middle" align="center">y = -0.2198x + 0.5031</td>
<td valign="middle" align="center">0.0159</td>
<td valign="middle" align="center">C<sub>SOM</sub>/N<sub>T</sub>
</td>
<td valign="middle" align="center">WSA</td>
<td valign="middle" align="center">y = 0.0537x - 0.0755</td>
<td valign="middle" align="center">0.036</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-0.416, -0.024)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-0.141, 0.248)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HS</sub>
</td>
<td valign="middle" align="center">PWI</td>
<td valign="middle" align="center">y = 0.0521x - 0.0019</td>
<td valign="middle" align="center">0.550 ***</td>
<td valign="middle" align="center">C<sub>SOM</sub>/N<sub>T</sub>
</td>
<td valign="middle" align="center">PWI</td>
<td valign="middle" align="center">y = 0.0031x - 0.0153</td>
<td valign="middle" align="center">0.076</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(0.047, 0.058)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-0.005, 0.11)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HA</sub>
</td>
<td valign="middle" align="center">EEG</td>
<td valign="middle" align="center">y = 177.93x + 489.89</td>
<td valign="middle" align="center">0.001</td>
<td valign="middle" align="center">EEG</td>
<td valign="middle" align="center">WSA</td>
<td valign="middle" align="center">y = -0.0001x + 0.5021</td>
<td valign="middle" align="center">0.008</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(43.5, 312)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-0.197, 0.197)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HA</sub>
</td>
<td valign="middle" align="center">TG</td>
<td valign="middle" align="center">y = 4777.9x + 1102</td>
<td valign="middle" align="center">0.298 ***</td>
<td valign="middle" align="center">TG</td>
<td valign="middle" align="center">WSA</td>
<td valign="middle" align="center">y = -0.00002x + 0.4633</td>
<td valign="middle" align="center">0.002</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(4334, 5222)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-0.198, 0.198)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HA</sub>
</td>
<td valign="middle" align="center">EEG/TG</td>
<td valign="middle" align="center">y = -11.131x + 5.8708</td>
<td valign="middle" align="center">0.073</td>
<td valign="middle" align="center">EEG/TG</td>
<td valign="middle" align="center">WSA</td>
<td valign="middle" align="center">y = -0.0014x + 0.4758</td>
<td valign="middle" align="center">0.004</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-18.7, -3.53)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-0.199, 0.196)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HA</sub>
</td>
<td valign="middle" align="center">WSA</td>
<td valign="middle" align="center">y = 0.3733x + 0.3833</td>
<td valign="middle" align="center">0.013</td>
<td valign="middle" align="center">PWI</td>
<td valign="middle" align="center">WSA</td>
<td valign="middle" align="center">y = -1.9318x + 0.4619</td>
<td valign="middle" align="center">0.001</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(0.177, 0.570)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-2.13, -1.73)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>HA</sub>
</td>
<td valign="middle" align="center">PWI</td>
<td valign="middle" align="center">y = 0.0657x + 0.0056</td>
<td valign="middle" align="center">0.249 ***</td>
<td valign="middle" align="center">PWI</td>
<td valign="middle" align="center">EEG</td>
<td valign="middle" align="center">y = -6161x + 603.35</td>
<td valign="middle" align="center">0.133</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(0.059, 0.073)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-6287, -6035)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>FA</sub>
</td>
<td valign="middle" align="center">EEG</td>
<td valign="middle" align="center">y = -964.65x + 653.9</td>
<td valign="middle" align="center">0.327 ***</td>
<td valign="middle" align="center">PWI</td>
<td valign="middle" align="center">TG</td>
<td valign="middle" align="center">y = 11242x + 1586.5</td>
<td valign="middle" align="center">0.029</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-1075, -854)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(10719, 11.765)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>FA</sub>
</td>
<td valign="middle" align="center">TG</td>
<td valign="middle" align="center">y = -811.42x + 1867.2</td>
<td valign="middle" align="center">0.015</td>
<td valign="middle" align="center">PWI</td>
<td valign="middle" align="center">EEG/TG</td>
<td valign="middle" align="center">y = -546.58x + 37.74</td>
<td valign="middle" align="center">0.243 ***</td>
</tr>
<tr>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-1338, -285)</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-539, -554)</td>
<td valign="middle" align="center"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>FA</sub>
</td>
<td valign="middle" align="center">EEG/TG</td>
<td valign="middle" align="center">y = -41.067x + 35.769</td>
<td valign="middle" align="center">0.138 **</td>
<td valign="bottom" align="center"/>
<td valign="bottom" align="left"/>
<td valign="bottom" align="left"/>
<td valign="bottom" align="left"/>
</tr>
<tr>
<td valign="middle" align="left"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-49.3, -32.9)</td>
<td valign="middle" align="center">
</td>
<td valign="bottom" align="center"/>
<td valign="bottom" align="left"/>
<td valign="bottom" align="left"/>
<td valign="bottom" align="left"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>FA</sub>
</td>
<td valign="middle" align="center">WSA</td>
<td valign="middle" align="center">y = -0.0977x + 0.448</td>
<td valign="middle" align="center">0.002</td>
<td valign="bottom" align="center"/>
<td valign="bottom" align="left"/>
<td valign="bottom" align="left"/>
<td valign="bottom" align="left"/>
</tr>
<tr>
<td valign="middle" align="left"/>
<td valign="middle" align="center"/>
<td valign="middle" align="center">(-0.295, 0.100)</td>
<td valign="middle" align="center">
</td>
<td valign="bottom" align="center"/>
<td valign="bottom" align="left"/>
<td valign="bottom" align="left"/>
<td valign="bottom" align="left"/>
</tr>
<tr>
<td valign="middle" align="center">C<sub>FA</sub>
</td>
<td valign="middle" align="center">PWI</td>
<td valign="middle" align="center">y = 0.07x + 0.0044</td>
<td valign="middle" align="center">0.492 ***</td>
<td valign="bottom" align="center"/>
<td valign="bottom" align="left"/>
<td valign="bottom" align="left"/>
<td valign="bottom" align="left"/>
</tr>
<tr>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center">
</td>
<td valign="middle" align="center">(0.064, 0.076)</td>
<td valign="middle" align="center">
</td>
<td valign="bottom" align="left">
</td>
<td valign="bottom" align="left">
</td>
<td valign="bottom" align="left">
</td>
<td valign="bottom" align="left">
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>* significant at <italic>p</italic>&lt;0.05; ** <italic>p</italic>&lt;0.01; *** <italic>p</italic>&lt;0.001. <italic>n</italic>=56. Numbers in brackets are 95% confidence intervals for regression coefficient. Red values represent relationships, where the difference between higher and lower bound of confidence interval is smaller, than absolute value of slope. C<sub>SOM</sub>, carbon is soil organic matter; N<sub>T</sub>, total soil nitrogen; C<sub>SOM</sub>/N<sub>T</sub>, carbon is soil organic matter/total soil nitrogen ratio; C<sub>HS</sub>, carbon is humic substances; C<sub>HA</sub>, carbon in humic acids; C<sub>FA</sub>, carbon in fulvic acids; EEG, easily extractable glomalin; TG, total glomalin; EEG/TG, easily extractable/total glomalin ratio; PWI, potential wettability index; iAR, index of aromaticity; WSA, water-stability of aggregates.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_5">
<label>3.5</label>
<title>The effect of fertiliser on the potential wettability index</title>
<p>The effect of the fertiliser treatment on the potential wettability index (PWI) is displayed in <xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>. The unfertilised Cont treatment (0.010) is comparable with F1/2+N1/2, N, and N+St treatments (0.014, 0.012, and 0.014, respectively), although these treatments produced a slight increase in PWI values. A significant increase (<italic>p</italic>&lt;0.05) in PWI values was determined for SS1, SS3, and F1 treatments in (0.016, 0.019, and 0.016, respectively) comparison with unfertilised Cont treatment. These treatments were also comparable to each other (<italic>p</italic>&lt;0.05). Confidence intervals (95%) for individual treatments also suggest relatively small data variability.</p>
<p>The relation of PWI to other SOM content and quality indicators was further evaluated by regression analysis (<xref ref-type="table" rid="T7">
<bold>Table&#xa0;7</bold>
</xref>). Significant relationships between PWI and C<sub>SOM</sub> (R<sup>2</sup> = 0.798), C<sub>HS</sub> (R<sup>2</sup> = 0.550), C<sub>HA</sub> (R<sup>2</sup> = 0.249), C<sub>FA</sub> (R<sup>2</sup> = 0.492), and EEG/TG (R<sup>2</sup> = 0.243, negative relationship) were determined (<italic>p</italic>&lt;0.001; <italic>n</italic>=56). The number of observations, tightness of confidence intervals (95%) and low significance level suggest, that the observed trends are significant and representative of reality.</p>
</sec>
<sec id="s3_6">
<label>3.6</label>
<title>The effect of fertiliser on the water stability of aggregates</title>
<p>The influence of fertiliser on the water-stability of aggregates (WSA) is documented in <xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>. The unfertilised Cont treatment (0.417) was statistically comparable to all treatments (between 0.391 and 0.456) except the F1 (0.516). The WSA value was not significantly related to any other SOM content and quality indicator (<italic>p</italic>&lt;0.05, <italic>n</italic>=56). Suppose we add a relatively high scatter in the data (as documented by confidence intervals in <xref ref-type="table" rid="T5">
<bold>Tables&#xa0;5</bold>
</xref> and <xref ref-type="table" rid="T7">
<bold>7</bold>
</xref>). In that case, it suggests that the water-stability of soil aggregates requires the investigation of more factors, than just the SOM content and quality. It might also be due to the fact, that data from two sites were pooled together.</p>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<sec id="s4_1">
<label>4.1</label>
<title>The influence of fertiliser treatment on the SOM content and quality</title>
<p>The experiment was comprised of a simple crop rotation, potatoes or maize, followed by winter wheat and spring barley. The lower content of C<sub>SOM</sub>, and overall low quality of soil organic matter (SOM) was observed in the control treatment. This statement is based on the lowest degree of polymerisation (HA) value, very low glomalin content, water-stability of aggregates (WSA) value and significant decrease in potential wettability index (PWI), and index of aromaticity (iAR) values compared to fertiliser treatments.</p>
<p>After the farmyard manure application, an increase in carbon in soil organic matter (C<sub>SOM</sub>) content was observed along with an increase in SOM quality indicators, which underscores the importance of the manure application. A high carbon in humic acids (C<sub>HA</sub>) content, HA, PWI, iAR and significantly increased total glomalin (TG) content were observed. Additionally, the highest stability of soil aggregates was present here. This is following our previous study in the maize monoculture on luvisol, where we also observed a significant increase in the C<sub>SOM</sub> content and HA after farmyard manure application (<xref ref-type="bibr" rid="B36">36</xref>). Men&#x161;&#xed;k et&#xa0;al. (<xref ref-type="bibr" rid="B64">64</xref>) and Liang et&#xa0;al. (<xref ref-type="bibr" rid="B65">65</xref>) also state a positive effect of farmyard manure application on the C<sub>SOM</sub> content and SOM quality (C<sub>HA</sub> content). The positive effect of farmyard manure application is also noted in Voltr et&#xa0;al. (<xref ref-type="bibr" rid="B66">66</xref>), Naikwade (<xref ref-type="bibr" rid="B67">67</xref>), and Macholdt et&#xa0;al. (<xref ref-type="bibr" rid="B68">68</xref>).</p>
<p>A build-up of SOM using the mineral-only N fertiliser can be achieved when applied at or below the level at which maximum yields are obtained, by promoting plant growth and increasing the amount of litter and root biomass added to the soil (<xref ref-type="bibr" rid="B23">23</xref>). On the other hand, such fertiliser can also cause a decrease in SOM. If applied in a dose greater than that needed for maximum crop yields, additional N inputs can increase the microbial biomass (<xref ref-type="bibr" rid="B69">69</xref>) and enzyme activity resulting in faster SOM mineralisation (<xref ref-type="bibr" rid="B23">23</xref>, <xref ref-type="bibr" rid="B70">70</xref>). Mineral only nitrogen (N) fertiliser did not produce a significant change in C<sub>SOM</sub> content in our study, although an increasing trend is visible (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>) suggesting the optimum nitrogen dose was used. What is noticeable in our study is a destructive effect on the SOM quality in comparison with the organic fertiliser treatments. The C<sub>HA</sub>, HA as well as TG, PWI, and iAR content were decreased. The negative influence of mineral-only N fertilisation on the SOM quality was also observed in our previous works (<xref ref-type="bibr" rid="B32">32</xref>, <xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B37">37</xref>). There were almost no differences in the sewage sludge (SS1) and mineral nitrogen + straw (N+St) treatments on the SOM content and quality. The extreme dose of sewage sludge in the SS3 treatment had a significant effect on the C<sub>SOM</sub>, C<sub>HA</sub>, as well as carbon in fulvic acids (C<sub>FA</sub>) content. This resulted in a very small change in the HA. The high N dose in this treatment lowers the stability of soil aggregates. The positive effect of normal sewage sludge application dose (similar to the SS1 treatment currently presented) was also observed in our previous studies on luvisol and chernozem (<xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B37">37</xref>).</p>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>Glomalin content</title>
<p>We have not established a significant effect of different fertiliser treatments on the easily extractable glomalin (EEG) content in our long-term experiments. Nevertheless, a tight correlation with C<sub>SOM</sub> was established elsewhere (<xref ref-type="bibr" rid="B71">71</xref>). Our previous conclusions related to the tighter correlation of total glomalin (TG) and C<sub>SOM</sub> were not confirmed (<xref ref-type="bibr" rid="B72">72</xref>). A tight relationship of EEG and C<sub>FA</sub> content was established, yet no correlation with C<sub>HA</sub> was present. It is likely, that EEG and fulvic acids represent less stable fractions of SOM. The relationship between TG and C<sub>SOM</sub> was not significant, although a positive correlation between glomalin content and C<sub>SOM</sub> was reported by different authors (<xref ref-type="bibr" rid="B10">10</xref>, <xref ref-type="bibr" rid="B73">73</xref>). This is likely due to the different quality of applied fertilisers. After the fertiliser application, the C<sub>SOM</sub> content is increased. However, due to the different quality of fertilisers, their influence on the SOM quality indicators also differs. The increased TG content is usually related to increased SOM quality (e.g. C<sub>HA</sub>). The highest TG content was measured on the farmyard manure (F1) treatment, which aligns with the findings of other studies (<xref ref-type="bibr" rid="B25">25</xref>, <xref ref-type="bibr" rid="B26">26</xref>, <xref ref-type="bibr" rid="B28">28</xref>, <xref ref-type="bibr" rid="B74">74</xref>, <xref ref-type="bibr" rid="B75">75</xref>). This supports the ability of manure to form stable organic matter, which is in line with recent findings of Yang et&#xa0;al. (<xref ref-type="bibr" rid="B76">76</xref>), that monitored a relative increase of C and N in the glomalin extract after organic fertiliser application. Furthermore, the C<sub>HA</sub> content was also highest in this treatment and, there was a significant relationship between TG content and C<sub>HA</sub> content (<xref ref-type="table" rid="T7">
<bold>Table&#xa0;7</bold>
</xref>). On the other hand, there was no significant relationship between TG content and C<sub>FA</sub> content.</p>
<p>An increase in glomalin content following manure application was also observed in our previous studies on luvisol (<xref ref-type="bibr" rid="B72">72</xref>) and cambisol (<xref ref-type="bibr" rid="B38">38</xref>). Similarly, Bertagnoli et&#xa0;al. (<xref ref-type="bibr" rid="B31">31</xref>) and Zhang et&#xa0;al. (<xref ref-type="bibr" rid="B30">30</xref>) reported an increase in TG content after the application of farmyard manure. In line with the findings of &#x10c;ern&#xfd; et&#xa0;al. (<xref ref-type="bibr" rid="B21">21</xref>) and Bal&#xed;k et&#xa0;al. (<xref ref-type="bibr" rid="B36">36</xref>), a strong correlation between TG content and the HA ratio was established in the present study. These results are in accord to those of Nichols and Wright (<xref ref-type="bibr" rid="B22">22</xref>), who determined a tight correlation between glomalin content and humic acids content.</p>
<p>Our initial hypothesis about the use of easily extractable/total glomalin content (EEG/TG) ratio as an indicator of SOM quality is based on our previous research focused on monitoring the soils across Czech Republic (<xref ref-type="bibr" rid="B21">21</xref>). A lower EEG/TG ratio was present on soils with higher SOM quality. In the current work, the EEG/TG ratio is significantly influenced by fertiliser treatments (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>). The lowest value (26.3%) was established for the F1 treatment, on the other hand, the highest ratio (33.4%) was established for the control treatment. We drew similar conclusions in our different study on five different luvisol sites (<xref ref-type="bibr" rid="B72">72</xref>). The highest significant value (32.6%) was, likewise, present in the unfertilised control treatment. Based on our previous work, it is clear, that the ratio is sharply determined by the soil type and soil texture (<xref ref-type="bibr" rid="B21">21</xref>). The lowest ratio was recorded in chernozems (14.7%), while the highest was found in luvisols (27.3%). The EEG/TG ratio is in a negative significant relationship with the C<sub>SOM</sub> content in the current study. Based on our current results, there was no influence of fertiliser treatment on the EEG content. The lowest EEG content was present in the control treatment. Therefore, the EEG/TG ratio was mostly determined by the TG content. It is possible to state, that along with the increasing quality of SOM (HA), a decreasing EEG/TG ratio was determined in the F1 treatment. Given the results, the use of the EEG/TG ratio is a fitting criterion while using the data about glomalin content (EEG and TG).</p>
</sec>
<sec id="s4_3">
<label>4.3</label>
<title>Potential wettability index</title>
<p>The quality of SOM is determined by the potential wettability index (PWI), which represents the ratio between aliphatic (C-H) and carboxylic (C=O) bonds. Higher PWI values indicate decreased aggregate wettability (<xref ref-type="bibr" rid="B77">77</xref>). The lowest PWI values were observed in the control treatment. Consistent with our previous results, we found a significant influence of fertiliser treatments on the PWI value (<xref ref-type="bibr" rid="B36">36</xref>). Demyan et&#xa0;al. (<xref ref-type="bibr" rid="B35">35</xref>) observed an increase in the PWI after farmyard manure application. Organic fertiliser application increased the hydrophobic particle content and contributed to the forming of larger soil aggregates under these treatments. Secondary metabolites created during the decomposition of organic matter can be hydrophobic in character (<xref ref-type="bibr" rid="B78">78</xref>). The negative influence of mineral N fertiliser on the PWI was observed. A decrease in the aromaticity of soil particles was observed by Liu et&#xa0;al. (<xref ref-type="bibr" rid="B79">79</xref>) and Hu et&#xa0;al. (<xref ref-type="bibr" rid="B80">80</xref>). An increase in aliphatic alkyl C content likely causes it. This would also explain a decrease in the PWI since aliphatic bands used for the calculation of PWI overlap. These results are in accord with our previous study on maize monoculture on chernozem (<xref ref-type="bibr" rid="B37">37</xref>). In the current study, we observed a strong relationship between PWI and C<sub>SOM</sub>, as well as other indicators of SOM quality like carbon in humic substances (C<sub>HS</sub>), C<sub>HA</sub>, and C<sub>FA</sub> in the current study. The strong correlation of PWI and C<sub>SOM</sub> is also mentioned elsewhere (<xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B81">81</xref>). The aromaticity index (iAR) calculated based on the reflectance of aliphatic and aromatic bands (<xref ref-type="bibr" rid="B82">82</xref>) confirmed the same conclusions as the PWI, with the application of farmyard manure and sewage sludge also increasing the iAR.</p>
<p>A positive correlation between glomalin fractions (EEG and TG) and aromatic and hydrophobic components of SOM was established by Stehl&#xed;kov&#xe1; et&#xa0;al. (<xref ref-type="bibr" rid="B50">50</xref>). On the other hand, the authors did not find an increase in the hydrophobicity index after an increase in the glycoprotein content, which resembles the relation to the potential wettability index (PWI), as mentioned in Bal&#xed;k et&#xa0;al. (<xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B37">37</xref>). In the work of Stehl&#xed;kov&#xe1; et&#xa0;al. (<xref ref-type="bibr" rid="B50">50</xref>), a negative correlation of the hydrophobicity index with EEG and TG was established.</p>
</sec>
<sec id="s4_4">
<label>4.4</label>
<title>Water stability of aggregates</title>
<p>There was no relationship between the water stability of soil aggregates (WSA) and SOM content and quality. This is likely due to the different quality and content of applied organic fertilisers (manure, sewage sludge, straw). While a general increase in C<sub>SOM</sub> content was observed, changes in its quality were inconsistent. We established the highest stability of soil aggregates in the farmyard manure (F1) treatment, which aligns with the findings of other studies (<xref ref-type="bibr" rid="B47">47</xref>, <xref ref-type="bibr" rid="B48">48</xref>, <xref ref-type="bibr" rid="B69">69</xref>, <xref ref-type="bibr" rid="B83">83</xref>, <xref ref-type="bibr" rid="B84">84</xref>). The F1 treatment also had the highest TG content. Long-term fertiliser applications influence, directly or indirectly, the accumulation of glomalin through the regulation of arbuscular mycorrhizal fungi (AMF) diversity, or increased production of their biomass (<xref ref-type="bibr" rid="B85">85</xref>). The farmyard manure application increases the glomalin content through the following pathways: 1) improvement in soil pH (<xref ref-type="bibr" rid="B86">86</xref>) and available nutrient content (<xref ref-type="bibr" rid="B87">87</xref>) thereby reducing the competition between the AMF and plant (<xref ref-type="bibr" rid="B88">88</xref>). 2) decrease in bulk density and increase in porosity of soil (<xref ref-type="bibr" rid="B89">89</xref>), which provides AMF a sufficient supply of oxygen and water (<xref ref-type="bibr" rid="B90">90</xref>). An increase in porosity also makes it easier for AMF hyphae to spread (<xref ref-type="bibr" rid="B91">91</xref>) and support the overall development of AMF (<xref ref-type="bibr" rid="B92">92</xref>). 3) The AMF biomass content correlates with glomalin content in the entire soil volume as well as in macroaggregates (<xref ref-type="bibr" rid="B93">93</xref>). Soil aggregates (&gt; 250 &#x3bc;m) provide appropriate sites for microorganisms and therefore the farmyard manure can support the growth and metabolism of multiple AMF species, which is stated in recent studies (<xref ref-type="bibr" rid="B94">94</xref>, <xref ref-type="bibr" rid="B95">95</xref>). In accord with this, the highest TG content as well as the highest aggregate stability (WSA) was determined in the F1 treatment. Similarly, Nthebere et&#xa0;al. (<xref ref-type="bibr" rid="B17">17</xref>) determined positive correlation between stability of aggregates (1-2&#xa0;mm) and TG content.</p>
<p>In contrast, Stehl&#xed;kov&#xe1; et&#xa0;al. (<xref ref-type="bibr" rid="B50">50</xref>) found no effect of manure application on the stability of soil aggregates when compared to the unfertilised treatment on phaeozem and even observed a negative effect on chernozem. However, they did report a positive effect of manure application on the stability of soil aggregates on cambisol.</p>
<p>Although C<sub>SOM</sub> content was increased in the SS3 treatment due to the extremely high dose of the applied sludge, the SOM quality (HA, EEG/C<sub>SOM</sub>, and TG/C<sub>SOM</sub>) did not increase proportionally. The extremely high inputs of N (including NH<sub>4</sub>
<sup>+</sup>) negatively impacted the stability of soil aggregates (<xref ref-type="bibr" rid="B48">48</xref>). Our previous conclusion regarding the application of sewage sludge in a long-term maize monoculture experiment on chernozem could not be confirmed, as the sewage sludge application in that study increased the stability of soil aggregates (<xref ref-type="bibr" rid="B38">38</xref>).</p>
<p>We did not establish any relationship between the water stability of aggregates (WSA) with glomalin content (EEG and TG) and PWI. The conclusion of Zhang et&#xa0;al. (<xref ref-type="bibr" rid="B96">96</xref>) and Nthebere et&#xa0;al. (<xref ref-type="bibr" rid="B17">17</xref>) could not be confirmed, as they mentioned that glomalin is an important factor in soil stability of soil aggregates. The effect of glomalin on stability of soil aggregates was also mentioned by Gispert et&#xa0;al. (<xref ref-type="bibr" rid="B24">24</xref>). High water stability of soil aggregates (WSA) is most likely caused by the application of SOM hydrophobic components. This is connected to the lower wettability of aggregates (higher hydrophobicity index values). In turn, this means greater protection for the soil aggregates (<xref ref-type="bibr" rid="B34">34</xref>). According to Thai et&#xa0;al. (<xref ref-type="bibr" rid="B43">43</xref>), the soil aggregates contain more hydrophobic groups, that stabilize the soil structure.</p>
<p>Similarly to our current study, Stehl&#xed;kov&#xe1; et&#xa0;al. (<xref ref-type="bibr" rid="B50">50</xref>) did not find a correlation between the stability of soil aggregates and EEG or TG, as previously noted by &#x158;ez&#xe1;&#x10d;ov&#xe1; et&#xa0;al. (<xref ref-type="bibr" rid="B71">71</xref>) and Wright and Anderson (<xref ref-type="bibr" rid="B97">97</xref>). The lack of relationship between glomalin content and WSA in this study can be summarized as: a) Applied organic fertilisers and mineral N fertilisers had varying effects on the SOM content and quality including the glomalin content. b) The effects of treatments were in many cases opposed regarding individual indicators (namely, the SS3 treatment). c) Glomalin content is only one of many factors influencing the soil aggregate stability. d) Two sites are evaluated, which increases the variability in the data. Moreover, further studies should be carried out to verify the use of glomalin as an indicator of aggregate stability in soils. Our achieved results further enhance the conclusions that mention the stability of soil aggregates is not only connected to the SOM content but also its quality and other factors, such as pH, clay particle content and quality, or the presence of Fe, Mn, Al (<xref ref-type="bibr" rid="B39">39</xref>, <xref ref-type="bibr" rid="B40">40</xref>, <xref ref-type="bibr" rid="B42">42</xref>).</p>
</sec>
<sec id="s4_5">
<label>4.5</label>
<title>Closing thoughs and recommendations</title>
<p>In the Czech Republic, luvisols belong to some of the most fertile soils. The problem is their relative susceptibility to a decrease in the SOM content and quality (<xref ref-type="bibr" rid="B98">98</xref>). The selected sites represent a considerable area of the Czech Republic in relation to their average temperature and precipitation. The selected crops (potatoes/maize, winter wheat, and spring barley) represent 50.2% of arable soil of the Czech Republic. Therefore, the achieved results regarding the changes in the SOM content and quality can be applied to the entire area of the Czech Republic luvisols. A positive effect of fertiliser on&#xa0;the SOM content and quality was visible in long-term field experiments with short crop rotation. The highest SOM quality was recorded after the farmyard manure application (highest HA, PWI, TG content, and WSA). The barley straw incorporation (once per three years) contributed to the stabilisation of SOM. This technology must be maximally used especially in crop rotations without perennial, forage crops (alfalfa, clover) and farms without animal husbandry. The application of sewage sludge can also be used. This, however, introduces the risk of dangerous risk element contamination. Mineral nitrogen fertiliser increased the C<sub>SOM</sub> content in comparison with the unfertilised control. On the other hand, some SOM quality indicators were affected negatively, especially the HA value.</p>
</sec>
</sec>
</body>
<back>
<sec id="s5" sec-type="data-availability">
<title>Data availability statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s6" sec-type="author-contributions">
<title>Author contributions</title>
<p>JB: Conceptualization, Funding acquisition, Project administration, Writing &#x2013; original draft. PS: Data curation, Visualization, Writing &#x2013; review &amp; editing. J&#x10c;: Methodology, Supervision, Writing &#x2013; review &amp; editing. OS: Investigation, Methodology, Writing &#x2013; original draft. MK: Writing &#x2013; review &amp; editing. SP: Data curation, Methodology, Writing &#x2013; review &amp; editing.</p>
</sec>
<sec id="s7" sec-type="funding-information">
<title>Funding</title>
<p>The author(s) declare that financial support was received for the research and/or publication of this article. Research in this manuscript was funded by the Ministry of Agriculture of the Czech Republic grant numbers QK21010124 and QK23020056.</p>
</sec>
<sec id="s8" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s9" sec-type="ai-statement">
<title>Generative AI statement</title>
<p>The author(s) declare that no Generative AI was used in the creation of this manuscript.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
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