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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Public Health</journal-id>
<journal-title>Frontiers in Public Health</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Public Health</abbrev-journal-title>
<issn pub-type="epub">2296-2565</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpubh.2023.1110903</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Public Health</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Antibiotic resistance of <italic>Streptococcus pneumoniae</italic> in Vietnamese children with severe pneumonia: a cross-sectional study</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" equal-contrib="yes">
<name><surname>Tran-Quang</surname> <given-names>Khai</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x02020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/2166054/overview"/>
</contrib>
<contrib contrib-type="author" equal-contrib="yes">
<name><surname>Nguyen-Thi-Dieu</surname> <given-names>Thuy</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x02020;</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Tran-Do</surname> <given-names>Hung</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Pham-Hung</surname> <given-names>Van</given-names></name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Nguyen-Vu</surname> <given-names>Trung</given-names></name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Tran-Xuan</surname> <given-names>Bach</given-names></name>
<xref ref-type="aff" rid="aff6"><sup>6</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/976399/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Larsson</surname> <given-names>Mattias</given-names></name>
<xref ref-type="aff" rid="aff7"><sup>7</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/974820/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Duong-Quy</surname> <given-names>Sy</given-names></name>
<xref ref-type="aff" rid="aff8"><sup>8</sup></xref>
<xref ref-type="aff" rid="aff9"><sup>9</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/926282/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Paediatrics, Can Tho University of Medicine and Pharmacy</institution>, <addr-line>Can Tho</addr-line>, <country>Vietnam</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Paediatrics, Hanoi Medical University</institution>, <addr-line>Hanoi</addr-line>, <country>Vietnam</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Nursing and Medical Technology, Can Tho University of Medicine and Pharmacy</institution>, <addr-line>Can Tho</addr-line>, <country>Vietnam</country></aff>
<aff id="aff4"><sup>4</sup><institution>International Research of Gene and Immunology Institute, Laboratory of Nam Khoa Biotek Company</institution>, <addr-line>Ho Chi Minh City</addr-line>, <country>Vietnam</country></aff>
<aff id="aff5"><sup>5</sup><institution>Department of Microbiology, Hanoi Medical University</institution>, <addr-line>Hanoi</addr-line>, <country>Vietnam</country></aff>
<aff id="aff6"><sup>6</sup><institution>Department of Health Economics, Institute of Health Economics and Technology, Hanoi Medical University</institution>, <addr-line>Hanoi</addr-line>, <country>Vietnam</country></aff>
<aff id="aff7"><sup>7</sup><institution>Global Public Health Department, Karolinska Institutet</institution>, <addr-line>Stockholm</addr-line>, <country>Sweden</country></aff>
<aff id="aff8"><sup>8</sup><institution>Biomedical Research Center, Lam Dong Medical College</institution>, <addr-line>Dalat</addr-line>, <country>Vietnam</country></aff>
<aff id="aff9"><sup>9</sup><institution>Division of Immuno-Allergology and Pulmonology, Penn State Medical College, Hershey Medical Center</institution>, <addr-line>Hershey, PA</addr-line>, <country>United States</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Tauqeer Hussain Mallhi, Jouf University, Saudi Arabia</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Mar Olga P&#x000E9;rez-Moreno, Hospital de Tortosa Verge de la Cinta, Spain; Timothy Kudinha, Charles Sturt University, Australia</p></fn>

<corresp id="c001">&#x0002A;Correspondence: Sy Duong-Quy <email>sduongquy.jfvp&#x00040;gmail.com</email></corresp>
<fn fn-type="equal" id="fn001"><p>&#x02020;These authors share first authorship</p></fn></author-notes>
<pub-date pub-type="epub">
<day>13</day>
<month>06</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>11</volume>
<elocation-id>1110903</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>25</day>
<month>05</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2023 Tran-Quang, Nguyen-Thi-Dieu, Tran-Do, Pham-Hung, Nguyen-Vu, Tran-Xuan, Larsson and Duong-Quy.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Tran-Quang, Nguyen-Thi-Dieu, Tran-Do, Pham-Hung, Nguyen-Vu, Tran-Xuan, Larsson and Duong-Quy</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license> </permissions>
<abstract>
<sec>
<title>Background</title>
<p><italic>Streptococcus pneumoniae</italic> is the most common bacterium that causes community-acquired pneumonia (CAP) in children. The rate of <italic>S. pneumoniae</italic> resistance to antibiotics is increasing, particularly in patients with severe CAP. Therefore, the level of antibiotic resistance of <italic>S. pneumoniae</italic> causing severe CAP in Vietnamese children requires regular monitoring.</p></sec>
<sec>
<title>Methods</title>
<p>This was a cross-sectional descriptive study. Nasopharyngeal aspiration specimens from children were cultured, isolated, and examined for <italic>S. pneumoniae</italic>. Bacterial strains were assessed for antimicrobial susceptibility, and the minimum inhibitory concentration (MIC) was determined.</p></sec>
<sec>
<title>Results</title>
<p>Eighty-nine strains of <italic>S. pneumoniae</italic> were isolated from 239 children with severe CAP. The majority of isolates were completely non-susceptible to penicillin (1.1% intermediate, 98.9% resistant) and highly resistant to erythromycin (96.6%) and clarithromycin (88.8%); the rate of resistance to ceftriaxone was 16.9%, with the proportion of intermediate resistance at 46.0%; 100% of strains were susceptible to vancomycin and linezolid. For most antibiotics, MIC<sub>50</sub> and MIC<sub>90</sub> were equal to the resistance threshold according to the Clinical and Laboratory Standards Institute 2021; penicillin had an eight-fold increase in MIC<sub>90</sub> (64 mg/L) and ceftriaxone had a 1.5-fold increase in MIC<sub>90</sub> (6 mg/L).</p></sec>
<sec>
<title>Conclusion</title>
<p><italic>Streptococcus pneumoniae</italic> isolates described in this study were resistant to many antibiotics. Penicillin should not be the first-line antibiotic of choice, and ceftriaxone at an enhanced dose should be used instead.</p></sec></abstract>
<kwd-group>
<kwd><italic>Streptococcus pneumoniae</italic></kwd>
<kwd>antibiotics resistance</kwd>
<kwd>community-acquired pneumonia</kwd>
<kwd>children</kwd>
<kwd>Vietnam</kwd>
</kwd-group>
<counts>
<fig-count count="2"/>
<table-count count="5"/>
<equation-count count="0"/>
<ref-count count="43"/>
<page-count count="9"/>
<word-count count="5454"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Infectious Diseases: Epidemiology and Prevention</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p><italic>Streptococcus pneumoniae</italic> is the most common bacterium that causes community-acquired pneumonia (CAP) in children (<xref ref-type="bibr" rid="B1">1</xref>&#x02013;<xref ref-type="bibr" rid="B3">3</xref>). The burden caused by <italic>S. pneumoniae</italic> is strongly related to high morbidity and mortality in children under 5 years of age (<xref ref-type="bibr" rid="B4">4</xref>). According to the Global Burden of Disease, Injuries, and Risk Factors Study (GBD), in 195 countries in 2016, <italic>S. pneumoniae</italic> was the cause of more than 341,000 deaths in children under 5 years with lower respiratory tract infections (<xref ref-type="bibr" rid="B5">5</xref>).</p>
<p>&#x003B2;-lactam antibiotics are recommended as the primary treatment of infections caused by <italic>S. pneumoniae</italic>. However, since penicillin-non-susceptible pneumococcus was first described in Australia in 1967 (<xref ref-type="bibr" rid="B6">6</xref>), the prevalence rate of resistance to &#x003B2;-lactams among <italic>S. pneumoniae</italic> strains has been increasing and has become one of the most important antimicrobial-resistant threats worldwide. Recent reports have shown that the rate of penicillin-non-susceptible <italic>pneumococci</italic> in some countries is 46%, 67.4%, or even up to 97.8% (<xref ref-type="bibr" rid="B7">7</xref>&#x02013;<xref ref-type="bibr" rid="B9">9</xref>). Similarly, the emergence of multi-drug resistant (MDR) strains of <italic>S. pneumoniae</italic> has made it difficult to treat diseases caused by this organism (<xref ref-type="bibr" rid="B10">10</xref>, <xref ref-type="bibr" rid="B11">11</xref>). Most cases of severe pneumonia fail with initial antibiotic treatment. Data on the role of disease and antibiotic resistance of <italic>S. pneumoniae</italic> causing pneumonia in Can Tho, a major city in southern Vietnam, is outdated and needs updating. This study aimed to evaluate the role of pathogens and the level of antibiotic resistance by determining the minimum inhibitory concentration (MIC) for <italic>S. pneumoniae</italic> causing severe CAP in children in Can Tho City and to clarify the appropriate antibiotic treatment decisions.</p></sec>
<sec sec-type="materials and methods" id="s2">
<title>Materials and methods</title>
<sec>
<title>Subjects</title>
<p>The study was performed on 239 children with severe CAP admitted to the Department of Respiratory Medicine, General Internal Medicine, Emergency, and Intensive Care Unit of Can Tho Children&#x00027;s Hospital from March 2020 to February 2021. This study was approved by the Institutional Review Board (IRB) of the Ethics Committee of Biomedical Research of Hanoi Medical University, Hanoi, Vietnam (No. 89/GCN-HDDDNCYSH-DHYHN).</p>
</sec>
<sec>
<title>Inclusion criteria</title>
<p>Children aged 2 months to 15 years who were diagnosed with severe pneumonia were included in the present study. The diagnostic criteria of severe CAP were the presence of a cough, dyspnoea and tachypnoea, or chest indrawing, with one of the symptoms such as fever (&#x0003E;38.5&#x000B0;C), hypoxia, cyanosis, short period of breathing pause, dehydration, or oxygen desaturation (&#x0003C; 92%); pneumonia was confirmed by standardized chest X-ray; all the study patients were hospitalized within 48 h.</p>
</sec>
<sec>
<title>Exclusion criteria</title>
<p>Patients who met one of the following criteria were excluded from the study: patients or their parents refused to be involved in the study, patients who had a hospitalized stay during the 14 previous days, and pneumonia due to a non-infectious cause.</p>
</sec>
<sec>
<title>Methods</title>
<p>This was a cross-sectional descriptive study. All patients who met the inclusion criteria were enrolled in the study. The patient underwent clinical examination, biological tests, and chest radiography.</p>
<sec>
<title>The nasotracheal aspiration specimen</title>
<p>Within 48 h, the nasotracheal aspiration (NTA) specimen from each patient was sent to the laboratory for culture and antimicrobial susceptibility testing (<xref ref-type="bibr" rid="B12">12</xref>). The quality of the specimens was checked before processing the culture to confirm that the samples originated from the lower respiratory tract. The number of squamous epithelial cells (SECs) and polymorphonuclear cells (PMNs) in the Gram stain smear was counted for each specimen. The presence of &#x0003C; 10 SECs and &#x0003E;25 PMNs per low-power field (magnification, &#x000D7; 100) was considered a high-quality specimen (<xref ref-type="bibr" rid="B13">13</xref>).</p></sec>
<sec>
<title>Culture medium</title>
<p>NTA specimens were cultured on Mueller Hilton blood agar (MHBA) with 5% sheep blood and incubated for 20&#x02013;24 h at 35&#x000B0;C with 5% CO<sub>2</sub>. Suspected colonies were identified by &#x003B1;-haemolysis, Gram (&#x0002B;) staining, optochin sensitivity, and bile solubility tests (<xref ref-type="fig" rid="F1">Figure 1</xref>) (<xref ref-type="bibr" rid="B14">14</xref>).</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Results of culture of <italic>Streptococcus pneumoniae</italic>. <bold>(A)</bold> Gram-staining; <bold>(B)</bold> Optochin (&#x0002B;).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpubh-11-1110903-g0001.tif"/>
</fig></sec>
<sec>
<title>Antimicrobial susceptibility testing</title>
<p>Antimicrobial susceptibility testing (AST) was determined by disc diffusion according to the Kirby-Bauer method (Oxoid Ltd., Basingstoke, UK) for trimethoprim/sulfamethoxazole, chloramphenicol, clindamycin, erythromycin, and oxacillin, and the minimum inhibitory concentration (MIC) was defined as the diffusion of antibiotics in agar from E-test (Bio-M&#x000E9;rieux, Marcy l&#x00027;Etoile, France) for penicillin, ceftriaxone, ciprofloxacin, levofloxacin, vancomycin, clarithromycin, and linezolid. MIC breakpoints or sterile ring diameters were used to determine antibiotic sensitivity or resistance, as recommended by the manufacturer&#x00027;s instructions for the <italic>E</italic>-test and disc diffusion, as well as by the Clinical and Laboratory Standards Institute (CLSI) in 2021 (<xref ref-type="bibr" rid="B14">14</xref>). All isolated organisms were defined as MDR when resistant to &#x02265;3 antibiotic classes (<xref ref-type="bibr" rid="B15">15</xref>). MIC<sub>50</sub> and MIC<sub>90</sub> were defined as the concentrations at which 50 and 90% of the bacterial strains were inhibited, respectively (<xref ref-type="bibr" rid="B14">14</xref>).</p>
</sec></sec>
<sec>
<title>Statistical analyses</title>
<p>Qualitative variables were presented as frequencies and percentages (%). All quantitative variables were presented as mean &#x000B1; standard deviation or median (min&#x02013;max). A chi-square test with a 95% confidence interval was used to compare the differences between groups. The <italic>p</italic>-value of &#x0003C; 0.05 was considered significantly different.</p></sec></sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec>
<title>Clinical and paraclinical characteristics</title>
<p>Nasopharyngeal aspiration specimens were collected from 239 children with severe CAP who had been admitted to Can Tho Children&#x00027;s Hospital. Five samples did not meet the required sample quality with &#x0003E;10 squamous cells and &#x0003C; 25 leukocytes, so the culture was not performed; the remaining 234 samples met the required standard. The rate of bacterial isolation was 157/234 (67.1%), of which the percentage of isolated <italic>S. pneumoniae</italic> was 89/234 (38.0%; <xref ref-type="fig" rid="F2">Figure 2</xref>).</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Flowchart of study subjects.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpubh-11-1110903-g0002.tif"/>
</fig>
<p>The median age of the children with severe CAP caused by <italic>S. pneumoniae</italic> was 17 months; the youngest was 2 months and the oldest was 176 months. The most common age group was under 2 years (64.0%) and rarely occurred in children over 5 years (2.3%). Although severe CAP was more frequent among boys than girls, overall and in episodes caused by <italic>S. pneumoniae</italic>, the percentage of male patients in the complete patients series was significantly higher than in those with severe <italic>S. pneumoniae</italic> CAP (64% vs. 55.1%; <italic>p</italic> = 0.032).</p>
<p>Fever and cough were the two most common symptoms of severe CAP. Most children had physical symptoms in the lungs (90.0% crackles), tachypnoea (88.8%), and chest indrawing (55.1%). Wheezing was less common in children infected with <italic>S. pneumoniae</italic> than in those infected by other microorganisms (<italic>p</italic> = 0.037), and 80.9% of the CAP cases caused by <italic>S. pneumoniae</italic> had peripheral blood oxygen saturation (SpO<sub>2</sub>) &#x02264; 96%. The mean WBC count was 14.07 &#x000B1; 5.94 ( &#x000D7; 10<sup>3</sup>/mm<sup>3</sup>). WBC increased by &#x0003E;15.000/mm<sup>3</sup>, accounting for 46.1%; the difference was not statistically significant (<italic>p</italic> = 0.309). Most (&#x0003E;60%) severe CAP cases showed an increase in CRP of &#x0003E;10 mg/L (<xref ref-type="table" rid="T1">Table 1</xref>).</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Demographic, clinical, and paraclinical characteristics.</p></caption> 
<table frame="box" rules="all">
<thead>
<tr style="background-color:#8f9496">
<th valign="top" align="left" colspan="2"><bold>Characteristics</bold></th>
<th valign="top" align="center"><bold>Severe CAP caused by <italic>Streptococcus pneumoniae</italic> (<italic>n</italic> = 89) <italic>n</italic> (%)</bold></th>
<th valign="top" align="left"><bold>Severe CAP (<italic>n</italic> = 239) <italic>n</italic> (%)</bold></th>
<th valign="top" align="center"><bold><italic>p</italic>-value</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Age</td>
<td valign="top" align="center">&#x0003C; 2 years</td>
<td valign="top" align="left">57 (64.0)</td>
<td valign="top" align="center">150 (62.8)</td>
<td valign="top" align="center">0.223</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">2&#x02013;5 years</td>
<td valign="top" align="left">30 (33.7)</td>
<td valign="top" align="center">76 (31.8)</td>
<td/>
</tr>
<tr>
<td/>
<td valign="top" align="center">&#x0003E;5 years</td>
<td valign="top" align="left">2 (2.3)</td>
<td valign="top" align="center">13 (5.4)</td>
<td/>
</tr> <tr>
<td valign="top" align="left">Sex</td>
<td valign="top" align="center">Male</td>
<td valign="top" align="left">49 (55.1)</td>
<td valign="top" align="center">153 (64)</td>
<td valign="top" align="center"><bold>0.032</bold></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Female</td>
<td valign="top" align="left">40 (44.9)</td>
<td valign="top" align="center">86 (<xref ref-type="bibr" rid="B16">16</xref>)</td>
<td/>
</tr> <tr>
<td valign="top" align="left">Pneumococcal vaccination</td>
<td valign="top" align="center">Complete</td>
<td valign="top" align="left">3 (3.4)</td>
<td valign="top" align="center">3 (1.3)</td>
<td valign="top" align="center">0.412</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Not available</td>
<td valign="top" align="left">81 (91.0)</td>
<td valign="top" align="center">223 (93.3)</td>
<td/>
</tr>
<tr>
<td/>
<td valign="top" align="center">Not clear</td>
<td valign="top" align="left">5 (5.6)</td>
<td valign="top" align="center">14 (5.9)</td>
<td/>
</tr> <tr>
<td valign="top" align="left">Symptoms and signs</td>
<td valign="top" align="center">Fever</td>
<td valign="top" align="left">89 (100)</td>
<td valign="top" align="center">239 (100)</td>
<td valign="top" align="center">NA</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Cough</td>
<td valign="top" align="left">89 (100)</td>
<td valign="top" align="center">239 (100)</td>
<td valign="top" align="center">NA</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Vomiting</td>
<td valign="top" align="left">11 (12.4)</td>
<td valign="top" align="center">29 (12.1)</td>
<td valign="top" align="center">0.909</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Diarrhea</td>
<td valign="top" align="left">8 (9.0)</td>
<td valign="top" align="center">24 (10.0)</td>
<td valign="top" align="center">0.507</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Chest pain</td>
<td valign="top" align="left">3 (3.4)</td>
<td valign="top" align="center">11 (4.6)</td>
<td valign="top" align="center">0.571</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Abdominal pain</td>
<td valign="top" align="left">2 (2.3)</td>
<td valign="top" align="center">3 (1.3)</td>
<td valign="top" align="center">0.904</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Tachypnoea</td>
<td valign="top" align="left">79 (88.8)</td>
<td valign="top" align="center">214 (89.5)</td>
<td valign="top" align="center">0.833</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Chest indrawing</td>
<td valign="top" align="left">49 (55.1)</td>
<td valign="top" align="center">136 (56.9)</td>
<td valign="top" align="center">0.794</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Accessory muscle used</td>
<td valign="top" align="left">38 (42.7)</td>
<td valign="top" align="center">88 (36.8)</td>
<td valign="top" align="center">0.223</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Crackles</td>
<td valign="top" align="left">80 (90.0)</td>
<td valign="top" align="center">212 (88.7)</td>
<td valign="top" align="center">0.429</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Wheezing</td>
<td valign="top" align="left">29 (32.6)</td>
<td valign="top" align="center">141 (59.0)</td>
<td valign="top" align="center"><bold>0.037</bold></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">SpO<sub>2</sub> &#x02264; 96%</td>
<td valign="top" align="left">72 (80.9)</td>
<td valign="top" align="center">194 (81.2)</td>
<td valign="top" align="center">0.701</td>
</tr> <tr>
<td valign="top" align="left">WBC count</td>
<td valign="top" align="center">&#x0003E;15,000/mm<sup>3</sup></td>
<td valign="top" align="left">41 (46.1)</td>
<td valign="top" align="center">99 (41.4)</td>
<td valign="top" align="center">0.309</td>
</tr>
<tr>
<td valign="top" align="left">CRP</td>
<td valign="top" align="center">&#x0003E;10 mg/L</td>
<td valign="top" align="left">58 (65.2)</td>
<td valign="top" align="center">144 (60.3)</td>
<td valign="top" align="center">0.169</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>WBC, white blood cell; CRP, C-reactive protein; NA, not applicable. The bold values mean statistically significant difference (with <italic>p</italic> &#x0003C; 0.05).</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec>
<title>Antibiotic-resistant characteristics</title>
<p>All isolates of <italic>S. pneumoniae</italic> were identified as MDR strains. These strains were completely non-susceptible to penicillin; for ceftriaxone, the majority of strains were intermediate (46.0%), followed by susceptible (37.1%); 100% of the strains were susceptible to vancomycin and linezolid (<xref ref-type="table" rid="T2">Table 2</xref>).</p>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>Antibiotic susceptibility patterns of <italic>Streptococcus pneumoniae</italic> isolates from children (<italic>n</italic> = 89).</p></caption> 
<table frame="box" rules="all">
<thead>
<tr style="background-color:#8f9496">
<th valign="top" align="left"><bold>Antibiotics</bold></th>
<th valign="top" align="center" colspan="3"><bold>Susceptibility</bold></th>
<th valign="top" align="center"><bold><italic>p</italic>-value</bold></th>
</tr>
<tr style="background-color:#8f9496">
<th/>
<th valign="top" align="center"><bold>S <italic>n</italic> (%)</bold></th>
<th valign="top" align="center"><bold>I <italic>n</italic> (%)</bold></th>
<th valign="top" align="center"><bold>R <italic>n</italic> (%)</bold></th>
<th/>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Trimethoprim/ sulfamethoxazole</td>
<td valign="top" align="center">7 (7.9)</td>
<td valign="top" align="center">2 (2.2)</td>
<td valign="top" align="center"><bold>80 (89.9)</bold></td>
<td valign="top" align="center">0.001</td>
</tr> <tr>
<td valign="top" align="left">Clindamycin</td>
<td valign="top" align="center">10 (11.2)</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center"><bold>79 (88.8)</bold></td>
<td valign="top" align="center">0.001</td>
</tr> <tr>
<td valign="top" align="left">Erythromycin</td>
<td valign="top" align="center">1 (1.1)</td>
<td valign="top" align="center">2 (2.2)</td>
<td valign="top" align="center"><bold>86 (96.6)</bold></td>
<td valign="top" align="center">0.001</td>
</tr> <tr>
<td valign="top" align="left">Clarithromycin</td>
<td valign="top" align="center">5 (5.6)</td>
<td valign="top" align="center">5 (5.6)</td>
<td valign="top" align="center"><bold>79 (88.8)</bold></td>
<td valign="top" align="center">0.001</td>
</tr> <tr>
<td valign="top" align="left">Penicillin</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">1 (1.1)</td>
<td valign="top" align="center"><bold>88 (98.9)</bold></td>
<td valign="top" align="center">0.001</td>
</tr> <tr>
<td valign="top" align="left">Ceftriaxone</td>
<td valign="top" align="center"><bold>33 (37.1)</bold></td>
<td valign="top" align="center"><bold>41 (46.0)</bold></td>
<td valign="top" align="center"><bold>15 (16.9)</bold></td>
<td valign="top" align="center">0.001</td>
</tr> <tr>
<td valign="top" align="left">Chloramphenicol</td>
<td valign="top" align="center"><bold>84 (94.4)</bold></td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">5 (5.6)</td>
<td valign="top" align="center">0.001</td>
</tr> <tr>
<td valign="top" align="left">Ciprofloxacin</td>
<td valign="top" align="center"><bold>53 (59.6)</bold></td>
<td valign="top" align="center">6 (6.7)</td>
<td valign="top" align="center">30 (33.7)</td>
<td valign="top" align="center">0.001</td>
</tr> <tr>
<td valign="top" align="left">Levofloxacin</td>
<td valign="top" align="center"><bold>72 (80.9)</bold></td>
<td valign="top" align="center">4 (4.5)</td>
<td valign="top" align="center">13 (14.6)</td>
<td valign="top" align="center">0.001</td>
</tr> <tr>
<td valign="top" align="left">Vancomycin</td>
<td valign="top" align="center"><bold>89 (100)</bold></td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left">Linezolid</td>
<td valign="top" align="center"><bold>89 (100)</bold></td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">0.001</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>S, susceptible; I, intermediate; R, resistant. The bold values mean statistically significant difference (with <italic>p</italic> &#x0003C; 0.05).</p>
</table-wrap-foot>
</table-wrap>
<p>Ceftriaxone-non-susceptible strains were more resistant to ciprofloxacin than ceftriaxone-susceptible strains, and this difference was statistically significant (<italic>p</italic> = 0.048; <xref ref-type="table" rid="T3">Table 3</xref>).</p>
<table-wrap position="float" id="T3">
<label>Table 3</label>
<caption><p>Susceptibility patterns of ceftriaxone-susceptible <italic>Streptococcus pneumoniae</italic> (<italic>n</italic> = 33) and ceftriaxone-non-susceptible <italic>S. pneumoniae</italic> (<italic>n</italic> = 56).</p></caption> 
<table frame="box" rules="all">
<thead>
<tr style="background-color:#8f9496">
<th valign="top" align="left"><bold>Antibiotics</bold></th>
<th valign="top" align="center" colspan="3"><bold>Ceftriaxone-susceptible</bold> <italic><bold>S. pneumoniae</bold></italic> <bold>(</bold><italic><bold>n</bold></italic> = <bold>33)</bold></th>
<th valign="top" align="center" colspan="3"><bold>Ceftriaxone-non-susceptible</bold> <italic><bold>S. pneumoniae</bold></italic> <bold>(</bold><italic><bold>n</bold></italic> = <bold>56)</bold></th>
<th valign="top" align="center"><bold><italic>p</italic>-value</bold></th>
</tr>
<tr style="background-color:#8f9496">
<th/>
<th valign="top" align="center"><bold>S <italic>n</italic> (%)</bold></th>
<th valign="top" align="center"><bold>I <italic>n</italic> (%)</bold></th>
<th valign="top" align="center"><bold>R <italic>n</italic> (%)</bold></th>
<th valign="top" align="center"><bold>S <italic>n</italic> (%)</bold></th>
<th valign="top" align="center"><bold>I <italic>n</italic> (%)</bold></th>
<th valign="top" align="center"><bold>R <italic>n</italic> (%)</bold></th>
<th/>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Trimethoprim/ sulfamethoxazole</td>
<td valign="top" align="center">4 (12.1)</td>
<td valign="top" align="center">1 (3.0)</td>
<td valign="top" align="center">28 (84.9)</td>
<td valign="top" align="center">3 (5.4)</td>
<td valign="top" align="center">1 (1.8)</td>
<td valign="top" align="center">52 (92.8)</td>
<td valign="top" align="center">0.473</td>
</tr> <tr>
<td valign="top" align="left">Clindamycin</td>
<td valign="top" align="center">2 (6.1)</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">31 (93.9)</td>
<td valign="top" align="center">8 (14.3)</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">48 (85.7)</td>
<td valign="top" align="center">0.235</td>
</tr> <tr>
<td valign="top" align="left">Erythromycin</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">33 (100)</td>
<td valign="top" align="center">1 (1.8)</td>
<td valign="top" align="center">2 (3.6)</td>
<td valign="top" align="center">53 (94.6)</td>
<td valign="top" align="center">0.401</td>
</tr> <tr>
<td valign="top" align="left">Clarithromycin</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">1 (3.0)</td>
<td valign="top" align="center">32 (97.0)</td>
<td valign="top" align="center">5 (8.9)</td>
<td valign="top" align="center">4 (7.2)</td>
<td valign="top" align="center">47 (83.9)</td>
<td valign="top" align="center">0.137</td>
</tr> <tr>
<td valign="top" align="left">Chloramphenicol</td>
<td valign="top" align="center">31 (93.9)</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">2 (6.1)</td>
<td valign="top" align="center">53 (94.6)</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">3 (5.4)</td>
<td valign="top" align="center">0.889</td>
</tr> <tr>
<td valign="top" align="left">Ciprofloxacin</td>
<td valign="top" align="center"><bold>25 (75.8)</bold></td>
<td valign="top" align="center"><bold>1 (3.0)</bold></td>
<td valign="top" align="center"><bold>7 (21.2)</bold></td>
<td valign="top" align="center"><bold>28 (50.0)</bold></td>
<td valign="top" align="center"><bold>5 (8.9)</bold></td>
<td valign="top" align="center"><bold>23 (41.1)</bold></td>
<td valign="top" align="center"><bold>0.048</bold></td>
</tr> <tr>
<td valign="top" align="left">Levofloxacin</td>
<td valign="top" align="center">26 (78.8)</td>
<td valign="top" align="center">2 (6.1)</td>
<td valign="top" align="center">5 (15.1)</td>
<td valign="top" align="center">46 (82.1)</td>
<td valign="top" align="center">2 (3.6)</td>
<td valign="top" align="center">8 (14.3)</td>
<td valign="top" align="center">0.850</td>
</tr> <tr>
<td valign="top" align="left">Vancomycin</td>
<td valign="top" align="center">41 (100)</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">48 (100)</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">NA</td>
</tr>
<tr>
<td valign="top" align="left">Linezolid</td>
<td valign="top" align="center">41 (100)</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">48 (100)</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">NA</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>S, susceptible; I, intermediate; R, resistant; NA, not applicable. The bold values mean statistically significant difference (with <italic>p</italic> &#x0003C; 0.05).</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec>
<title>Minimal inhibitory concentration (MIC) distribution</title>
<p><xref ref-type="table" rid="T4">Table 4</xref> shows the MIC distribution of the antibiotics, and <xref ref-type="table" rid="T5">Table 5</xref> shows the MIC<sub>50</sub> and MIC<sub>90</sub> values of the antibiotic tested against <italic>S. pneumoniae</italic>. For most antibiotics, MIC<sub>50</sub> coincided with MIC<sub>90</sub> and equaled the resistance threshold indicated in CLSI 2021; penicillin had an eight-fold increase in MIC<sub>90</sub> (64 mg/L) and ceftriaxone had a 1.5-fold increase in MIC<sub>90</sub> (6 mg/L).</p>
<table-wrap position="float" id="T4">
<label>Table 4</label>
<caption><p>MIC distribution of <italic>Streptococcus pneumoniae</italic> isolates from children (<italic>n</italic> = 89).</p></caption> 
<table frame="box" rules="all">
<thead>
<tr style="background-color:#8f9496">
<th valign="top" align="left"><bold>Antibiotics</bold></th>
<th valign="top" align="center"><bold>Number of isolates at MIC values (mg/L)</bold></th>
</tr>
<tr style="background-color:#8f9496">
<th/>
<th valign="top" align="center"><bold>0.18</bold></th>
<th valign="top" align="center"><bold>0.25</bold></th>
<th valign="top" align="center"><bold>0.38</bold></th>
<th valign="top" align="center"><bold>0.5</bold></th>
<th valign="top" align="center"><bold>0.75</bold></th>
<th valign="top" align="center"><bold>1</bold></th>
<th valign="top" align="center"><bold>1.5</bold></th>
<th valign="top" align="center"><bold>2</bold></th>
<th valign="top" align="center"><bold>3</bold></th>
<th valign="top" align="center"><bold>4</bold></th>
<th valign="top" align="center"><bold>6</bold></th>
<th valign="top" align="center"><bold>8</bold></th>
<th valign="top" align="center"><bold>12</bold></th>
<th valign="top" align="center"><bold>16</bold></th>
<th valign="top" align="center"><bold>24</bold></th>
<th valign="top" align="center"><bold>32</bold></th>
<th valign="top" align="center"><bold>48</bold></th>
<th valign="top" align="center"><bold>64</bold></th>
<th valign="top" align="center"><bold>128</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Trimethoprim/ sulfamethoxazole<sup>&#x0002A;</sup></td>
<td/>
<td/>
<td/>
<td valign="top" align="center">7</td>
<td/>
<td valign="top" align="center">2</td>
<td/>
<td/>
<td/>
<td valign="top" align="center"><bold>80</bold></td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr> <tr>
<td valign="top" align="left">Clindamycin</td>
<td/>
<td/>
<td/>
<td valign="top" align="center">10</td>
<td/>
<td valign="top" align="center"><bold>79</bold></td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr> <tr>
<td valign="top" align="left">Erythromycin</td>
<td/>
<td valign="top" align="center">1</td>
<td/>
<td valign="top" align="center">2</td>
<td/>
<td valign="top" align="center"><bold>86</bold></td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr> <tr>
<td valign="top" align="left">Clarithromycin</td>
<td/>
<td valign="top" align="center">5</td>
<td/>
<td valign="top" align="center">5</td>
<td/>
<td valign="top" align="center"><bold>79</bold></td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr> <tr>
<td valign="top" align="left">Penicillin</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center"><bold>74</bold></td>
<td/>
</tr> <tr>
<td valign="top" align="left">Ceftriaxone</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">5</td>
<td valign="top" align="center">15</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center"><bold>27</bold></td>
<td valign="top" align="center">5</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">5</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr> <tr>
<td valign="top" align="left">Chloramphenicol</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="center"><bold>84</bold></td>
<td/>
<td valign="top" align="center">5</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr> <tr>
<td valign="top" align="left">Ciprofloxacin</td>
<td valign="top" align="center">4</td>
<td/>
<td valign="top" align="center">2</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center"><bold>24</bold></td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td/>
<td valign="top" align="center">1</td>
</tr> <tr>
<td valign="top" align="left">Levofloxacin</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">5</td>
<td valign="top" align="center">15</td>
<td valign="top" align="center"><bold>19</bold></td>
<td valign="top" align="center">14</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">1</td>
<td/>
<td/>
<td/>
<td/>
</tr> <tr>
<td valign="top" align="left">Vancomycin</td>
<td/>
<td/>
<td/>
<td valign="top" align="center">1</td>
<td/>
<td valign="top" align="center"><bold>88</bold></td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">Linezolid</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="center"><bold>89</bold></td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TN1"><p>MIC, minimal inhibitory concentration.</p></fn>
<fn id="TN2"><p><sup>&#x0002A;</sup>MIC values were shown in the table for Trimethoprim, corresponding to the MIC of Trimethoprim/sulfamethoxazole 0.5/9.5, 1/19, 2/38, 4/76 (mg/L). The bold values are the frequencies for the values of MIC90, the concentration at which 90% of bacterial strains are inhibited.</p></fn>
</table-wrap-foot>
</table-wrap>
<table-wrap position="float" id="T5">
<label>Table 5</label>
<caption><p>MIC breakpoints according to CLSI in 2021 and MIC<sub>50</sub>; MIC<sub>90</sub> of antibiotics for isolated <italic>Streptococcus pneumoniae</italic>.</p></caption> 
<table frame="box" rules="all">
<thead>
<tr style="background-color:#8f9496">
<th valign="top" align="left"><bold>Antibiotics</bold></th>
<th valign="top" align="center" colspan="3"><bold>MIC breakpoints according to CLSI in 2021 (mg/L)</bold></th>
<th valign="top" align="center"><bold>MIC<sub>50</sub> (mg/L)</bold></th>
<th valign="top" align="center"><bold>MIC<sub>90</sub> (mg/L)</bold></th>
</tr>
<tr style="background-color:#8f9496">
<th/>
<th valign="top" align="center"><bold>S</bold></th>
<th valign="top" align="center"><bold>I</bold></th>
<th valign="top" align="center"><bold>R</bold></th>
<th/>
<th/>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Trimethoprim/sulfamethoxazole</td>
<td valign="top" align="center"> &#x02264; 0.5/9.5</td>
<td valign="top" align="center">1/19&#x02013;2/38</td>
<td valign="top" align="center">&#x02265;4/76</td>
<td valign="top" align="center">4/76</td>
<td valign="top" align="center">4/76</td>
</tr> <tr>
<td valign="top" align="left">Clindamycin</td>
<td valign="top" align="center"> &#x02264; 0.25</td>
<td valign="top" align="center">0,5</td>
<td valign="top" align="center">&#x02265;1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
</tr> <tr>
<td valign="top" align="left">Erythromycin</td>
<td valign="top" align="center"> &#x02264; 0.25</td>
<td valign="top" align="center">0,5</td>
<td valign="top" align="center">&#x02265;1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
</tr> <tr>
<td valign="top" align="left">Clarithromycin</td>
<td valign="top" align="center"> &#x02264; 0.25</td>
<td valign="top" align="center">0,5</td>
<td valign="top" align="center">&#x02265;1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
</tr> <tr>
<td valign="top" align="left">Penicillin (non-meningitis)</td>
<td valign="top" align="center"> &#x02264; 2</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">&#x02265;8</td>
<td valign="top" align="center">64</td>
<td valign="top" align="center">64</td>
</tr> <tr>
<td valign="top" align="left">Ceftriaxone (non-meningitis)</td>
<td valign="top" align="center"> &#x02264; 1</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">&#x02265;4</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">6</td>
</tr> <tr>
<td valign="top" align="left">Chloramphenicol</td>
<td valign="top" align="center"> &#x02264; 4</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02265;8</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">8</td>
</tr> <tr>
<td valign="top" align="left">Ciprofloxacin</td>
<td valign="top" align="center">NT</td>
<td valign="top" align="center">NT</td>
<td valign="top" align="center">NT</td>
<td valign="top" align="center">1.5</td>
<td valign="top" align="center">12</td>
</tr> <tr>
<td valign="top" align="left">Levofloxacin</td>
<td valign="top" align="center"> &#x02264; 2</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">&#x02265;8</td>
<td valign="top" align="center">0.75</td>
<td valign="top" align="center">8</td>
</tr> <tr>
<td valign="top" align="left">Vancomycin</td>
<td valign="top" align="center"> &#x02264; 1</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center"><bold>&#x02013;</bold></td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
</tr>
<tr>
<td valign="top" align="left">Linezolid</td>
<td valign="top" align="center"> &#x02264; 2</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">2</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>MIC, Minimal Inhibitory Concentration; MIC<sub>50</sub>, concentration at which 50% of bacterial strains were inhibited; MIC<sub>90</sub>, concentration at which 90% of bacterial strains were inhibited; CLSI, clinical and laboratory standards institute; S, susceptible; I, intermediate; R, resistant; NT, not tested.</p>
</table-wrap-foot>
</table-wrap></sec></sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>Bacterial culture is the &#x02018;gold standard&#x00027; for the identification of pneumonia pathogens (<xref ref-type="bibr" rid="B17">17</xref>). In this study, the rate of isolation of bacterial agents of pneumonia was 67.1%, which is in agreement with others (<xref ref-type="bibr" rid="B18">18</xref>) and higher than others, with rates of 35% and 42% (<xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B20">20</xref>). However, the rate reported here was lower than the one reported by Olwagen et al. (<xref ref-type="bibr" rid="B21">21</xref>) of 71%. Obviously, the rate of positive bacterial cultures varies widely by studies and countries and is dependent on sampling techniques, storage, culture, incubation, and temperature used, for which standardized techniques are required when working with such specimens (<xref ref-type="bibr" rid="B17">17</xref>). In addition, the present study was conducted with patients with severe pneumonia, which explains why the rate of isolated bacteria was so high.</p>
<p>The present study showed that severe CAP caused by <italic>S. pneumoniae</italic> (and other microorganisms) was common, mainly in children under 2 years of age, and followed by 2&#x02013;5 years. This finding is consistent with what is in literature, with many studies recognizing that children under 5 years of age are more susceptible to pneumonia than older children, and tend to suffer a worse prognosis of the disease (<xref ref-type="bibr" rid="B18">18</xref>, <xref ref-type="bibr" rid="B22">22</xref>). The proportion of boys with severe CAP due to <italic>pneumococci</italic> was higher than in girls, a finding which is in agreement with other studies (<xref ref-type="bibr" rid="B23">23</xref>, <xref ref-type="bibr" rid="B24">24</xref>). Of the children with severe CAP, 93.3% did not have pneumococcal immunization status and only three (1.3%) were vaccinated. However, all these three were infected with <italic>pneumococci</italic>, which begs the question of which <italic>S. pneumoniae</italic> serotypes infected the children in the study group and that matched the serotypes of the vaccine used? This is also a limitation of this study, which is being implemented as a follow-up study in this area. A study in a northern province of Vietnam identified eight serotypes of <italic>S. pneumoniae</italic> isolated from unvaccinated children under 5 years of age with pneumonia, including 19F, 23F, 19A, 6A/B, 15A, 9V, 11A, and 14 (<xref ref-type="bibr" rid="B25">25</xref>).</p>
<p>The present study showed that most children with CAP caused by <italic>S. pneumoniae</italic> had peripheral blood oxygen saturation (SpO<sub>2</sub>) &#x02264; 96%. Some recent studies have shown that there are no signs or symptoms sufficient to confirm pneumonia in children, but diagnostic specificity can be improved when some clinical features, such as tachypnoea, fever, and hypoxia, are present (<xref ref-type="bibr" rid="B26">26</xref>, <xref ref-type="bibr" rid="B27">27</xref>). A decline in SpO<sub>2</sub> is also a valuable parameter for diagnosing pneumonia. According to Shah et al. (<xref ref-type="bibr" rid="B28">28</xref>), the presence of moderate hypoxaemia and increased breathing effort are the most relevant signs of pneumonia. In the present study, wheezing was less common in children infected with <italic>S. pneumoniae</italic> than in those infected by other microorganisms. A previous study demonstrated that wheezing was more common in atypical or viral pneumonia than in typical bacterial pneumonia (<xref ref-type="bibr" rid="B29">29</xref>).</p>
<p>The present study suggests that WBC is not a reliable indicator of the severity of the disease (<xref ref-type="table" rid="T1">Table 1</xref>), which is consistent with a previous study showing that WBC was a poor indicator of the etiology and severity of pneumonia (<xref ref-type="bibr" rid="B24">24</xref>). Esposito et al. (<xref ref-type="bibr" rid="B30">30</xref>) highlighted that WBC count had the lowest positive predictive value compared to procalcitonin and CRP. The present study found that up to 65.2% of children with severe CAP due to <italic>S. pneumoniae</italic> had an increase in CRP levels &#x0003E;10 mg/L. CRP is also considered an acute-phase reactant associated with disease severity in children with bacterial infection (<xref ref-type="bibr" rid="B31">31</xref>).</p>
<p>In this study, the majority of <italic>S. pneumoniae</italic> isolates were identified as MDR, with 98.9% of the isolates completely non-susceptible to penicillin and others. In recent years, the proportion of penicillin non-susceptible <italic>pneumococci</italic> has increased to over 60% (<xref ref-type="bibr" rid="B7">7</xref>&#x02013;<xref ref-type="bibr" rid="B9">9</xref>). Consequently, penicillin is no longer the first-line antibiotic for children with severe CAP in many countries; clinicians are using cefotaxime and ceftriaxone, a third-generation cephalosporin, instead (<xref ref-type="bibr" rid="B32">32</xref>, <xref ref-type="bibr" rid="B33">33</xref>). In this study, the rate of <italic>S. pneumoniae</italic> resistant to ceftriaxone was only 16.9%; however, the percentage of intermediate resistance was 46.0%. This result raises great concern about the likelihood of first-line antibiotic failure. When comparing the sensitivity of antibiotics between the two groups of ceftriaxone-susceptible and ceftriaxone-non-susceptible <italic>S. pneumoniae</italic>, ceftriaxone-non-susceptible strains were still sensitive to vancomycin (100%), linezolid (100%), and chloramphenicol (93.8%). A previous study on antimicrobial susceptibility testing for isolated <italic>S. pneumoniae</italic> also showed a low susceptibility rate to all antibiotics except vancomycin (100%), linezolid (100%), and levofloxacin (89.5%) (<xref ref-type="bibr" rid="B34">34</xref>). According to the results of a study conducted by Sweden et al., the proportion of MDR <italic>S. pneumoniae</italic> susceptible to vancomycin and levofloxacin was 100% (<xref ref-type="bibr" rid="B16">16</xref>). However, chloramphenicol is rarely used orally and intravenously in Vietnamese children due to its common side effects such as blood dyscrasias, aplastic anemia, and leukemia (<xref ref-type="bibr" rid="B35">35</xref>, <xref ref-type="bibr" rid="B36">36</xref>). Therefore, vancomycin and linezoild may be suitable alternative antibiotics for severe MDR pneumococcal pneumonia.</p>
<p>Macrolide antibiotics have become less effective against <italic>S. pneumoniae</italic>, with high resistance rates reported in the present study for erythromycin (96.6%) and clarithromycin (88.8%). Other studies have found that <italic>S. pneumoniae</italic> is more resistant to macrolides and does not support the routine combination of &#x003B2;-lactam antibiotics with macrolides (<xref ref-type="bibr" rid="B16">16</xref>, <xref ref-type="bibr" rid="B37">37</xref>). However, in contrast, other studies have suggested that macrolide combination therapy is more effective than &#x003B2;-lactam monotherapy, especially in children &#x0003E;5 years of age or in atypical bacterial co-infections with pathogens such as <italic>Mycoplasma pneumoniae</italic> (<xref ref-type="bibr" rid="B38">38</xref>, <xref ref-type="bibr" rid="B39">39</xref>).</p>
<p>Analysis of the distribution of MIC, MIC<sub>50</sub>, and MIC<sub>90</sub> among the studied <italic>S. pneumoniae</italic> isolates revealed that penicillin had an eight-fold increase in MIC<sub>90</sub> (64 mg/L). This finding suggests that ceftriaxone is more suitable than penicillin for the initial treatment of severe CAP caused by <italic>S. pneumoniae</italic>. However, based on our study findings, an increase in the dose of ceftriaxone is needed, as evidenced by the 1.5-fold increase in MIC<sub>90</sub> for this antibiotic in this study. Recommendations for how much to increase the dose depends on the pharmacokinetic/pharmacodynamic (pK/pD) breakpoint, which is another interesting follow-up to this study. In recent years, many recommendations have been made to increase the therapeutic dose of ceftriaxone to 100 mg/kg/day for severe infections or in places with insignificant penicillin resistance (&#x02265;25%) (<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B40">40</xref>).</p>
<p>In the present study, the fluoroquinolones, ciprofloxacin and levofloxacin, had a fairly wide MIC range of 0.18&#x02013;128 and 0.18&#x02013;24 mg/L, respectively. These results suggest that it may be difficult to choose a therapeutic dose of ciprofloxacin. Moreover, if a strain of <italic>S. pneumoniae</italic> was not susceptible to ceftriaxone, it was likely that it would not be susceptible to ciprofloxacin, although the rate of ciprofloxacin susceptibility to <italic>S. pneumoniae</italic> was 59.6%. Although there have been very few reports of treatment failure with ciprofloxacin, this antibiotic was not considered a &#x0201C;respiratory fluoroquinolone&#x0201D; in the United States (<xref ref-type="bibr" rid="B41">41</xref>). Indeed, the CLSI does not provide ciprofloxacin breakpoints for <italic>S. pneumoniae</italic> (<xref ref-type="bibr" rid="B14">14</xref>). Furthermore, ciprofloxacin is not recommended for the treatment of respiratory tract infections in most treatment guidelines (<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B42">42</xref>). In fact, the systemic use of fluoroquinolones in patients under 18 years is not recommended in many countries due to eventual adverse musculoskeletal effects (<xref ref-type="bibr" rid="B43">43</xref>). Therefore, extreme caution should be exercised when using ciprofloxacin to treat children with severe CAP.</p></sec>
<sec sec-type="conclusions" id="s5">
<title>Conclusion</title>
<p>Our study showed a high prevalence rate of <italic>S. pneumoniae</italic> strains resistant to many antibiotics, including penicillin-resistant strains with high MICs, among strains from children with severe CAP. Therefore, penicillin should not be the first-line antibiotic of choice, and ceftriaxone at an enhanced dose should be used instead.</p></sec>
<sec sec-type="data-availability" id="s6">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/supplementary material, further inquiries can be directed to the corresponding author.</p></sec>
<sec sec-type="ethics-statement" id="s7">
<title>Ethics statement</title>
<p>The studies involving human participants were reviewed and approved by Review Board Committee for Ethics Committee in Biomedical Research of Hanoi Medical University, Hanoi, Vietnam (No. 89/GCN-HDDDNCYSH-DHYHN). Written informed consent to participate in this study was provided by the participants&#x00027; legal guardian/next of kin.</p></sec>
<sec sec-type="author-contributions" id="s8">
<title>Author contributions</title>
<p>Conceptualization, resources, and investigation: KT-Q, TN-T-D, HT-D, and VP-H. Software: HT-D, BT-X, ML, and SD-Q. Formal analysis: TN-T-D, SD-Q, HT-D, TN-V, BT-X, and ML. Manuscript writing, review, and editing: KT-Q, TN-T-D, HT-D, TN-V, BT-X, ML, and SD-Q. All authors have read, commented upon, and approved the final manuscript.</p></sec>
</body>
<back>
<sec sec-type="funding-information" id="s9">
<title>Funding</title>
<p>This work was partially supported by the International Research of the Gene and Immunology Institute, Laboratory of Nam Khoa Biotek Company, Ho Chi Minh City, Vietnam.</p>
</sec>
<ack><p>The authors would like to thank Can Tho University of Medicine and Pharmacy, Can Tho&#x00027;s Children Hospital, and Mr. Van Hung Pham from the International Research of Gene and Immunology Institute for their technical support.</p>
</ack>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x00027;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>

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