<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.3 20210610//EN" "JATS-journalpublishing1-3-mathml3.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" article-type="brief-report" dtd-version="1.3" xml:lang="EN">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title-group>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2025.1740879</article-id>
<article-version article-version-type="Version of Record" vocab="NISO-RP-8-2008"/>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Perspective</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Microbial strategies for drought stress mitigation- a sustainable frontier in plant resilience</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Gahlot</surname><given-names>Kumar D.</given-names></name>
<xref ref-type="corresp" rid="c001"><sup>*</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1864239/overview"/>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="methodology" vocab-term-identifier="https://credit.niso.org/contributor-roles/methodology/">Methodology</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Formal analysis" vocab-term-identifier="https://credit.niso.org/contributor-roles/formal-analysis/">Formal analysis</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Writing &#x2013; review &amp; editing" vocab-term-identifier="https://credit.niso.org/contributor-roles/writing-review-editing/">Writing &#x2013; review &amp; editing</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="validation" vocab-term-identifier="https://credit.niso.org/contributor-roles/validation/">Validation</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Project-administration" vocab-term-identifier="https://credit.niso.org/contributor-roles/project-administration/">Project administration</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="supervision" vocab-term-identifier="https://credit.niso.org/contributor-roles/supervision/">Supervision</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Data curation" vocab-term-identifier="https://credit.niso.org/contributor-roles/data-curation/">Data curation</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Writing &#x2013; original draft" vocab-term-identifier="https://credit.niso.org/contributor-roles/writing-original-draft/">Writing &#x2013; original draft</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="investigation" vocab-term-identifier="https://credit.niso.org/contributor-roles/investigation/">Investigation</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="software" vocab-term-identifier="https://credit.niso.org/contributor-roles/software/">Software</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="conceptualization" vocab-term-identifier="https://credit.niso.org/contributor-roles/conceptualization/">Conceptualization</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Funding acquisition" vocab-term-identifier="https://credit.niso.org/contributor-roles/funding-acquisition/">Funding acquisition</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="visualization" vocab-term-identifier="https://credit.niso.org/contributor-roles/visualization/">Visualization</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="resources" vocab-term-identifier="https://credit.niso.org/contributor-roles/resources/">Resources</role>
</contrib>
</contrib-group>
<aff id="aff1"><institution>Department of Molecular Biology and Ume&#xe5; Centre for Microbial Research (UCMR), Ume&#xe5; University</institution>, <city>Ume&#xe5;</city>,&#xa0;<country country="se">Sweden</country></aff>
<author-notes>
<corresp id="c001"><label>*</label>Correspondence: Kumar D. Gahlot, <email xlink:href="mailto:dharmender.kumar.gahlot@umu.se">dharmender.kumar.gahlot@umu.se</email></corresp>
</author-notes>
<pub-date publication-format="electronic" date-type="pub" iso-8601-date="2026-01-06">
<day>06</day>
<month>01</month>
<year>2026</year>
</pub-date>
<pub-date publication-format="electronic" date-type="collection">
<year>2025</year>
</pub-date>
<volume>16</volume>
<elocation-id>1740879</elocation-id>
<history>
<date date-type="received">
<day>06</day>
<month>11</month>
<year>2025</year>
</date>
<date date-type="accepted">
<day>08</day>
<month>12</month>
<year>2025</year>
</date>
<date date-type="rev-recd">
<day>25</day>
<month>11</month>
<year>2025</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2026 Gahlot.</copyright-statement>
<copyright-year>2026</copyright-year>
<copyright-holder>Gahlot</copyright-holder>
<license>
<ali:license_ref start_date="2026-01-06">https://creativecommons.org/licenses/by/4.0/</ali:license_ref>
<license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License (CC BY)</ext-link>. The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p>
</license>
</permissions>
<abstract>
<p>Drought stress is a major constraint on global agriculture, exacerbated by climate change and increasing water scarcity. Conventional strategies such as breeding and genetic engineering have improved drought tolerance in crops, yet their scalability and adaptability remain limited. Microbial interventions, particularly those involving beneficial plant-associated microorganisms, offer a sustainable and complementary approach to enhance plant resilience under water-deficit conditions. This opinion article explores microbial strategies for drought mitigation, emphasizing the role of <italic>Rhizobium</italic> strains, digested distillery spent wash, and multi-omics technologies. Recent studies demonstrate that developed <italic>Rhizobium</italic> strains significantly improve soil fertility, nodulation, and nitrogen fixation in legumes, contributing to higher yields and better soil health in drought-prone regions. Similarly, the application of digested distillery spent wash in chickpea (<italic>Cicer arietinum</italic>) enhances nutrient uptake, photosynthetic activity, and drought tolerance. Advances in genomics, transcriptomics, proteomics, and metabolomics have revealed complex plant&#x2013;microbe interactions, identifying microbial metabolites and signaling pathways that activate drought-responsive genes and osmo-protective mechanisms. Despite these promising findings, challenges persist in translating laboratory results to field conditions due to soil heterogeneity and microbial competition. Precision microbiome engineering, informed by multi-omics data, and the development of tailored microbial consortia represent a transformative frontier for sustainable agriculture. By integrating ecological complexity with technological innovation, microbial strategies can reduce chemical inputs, promote regenerative practices, and build resilient agroecosystems. This article advocates elevating microbes from supporting roles to central players in addressing drought stress and ensuring global food security.</p>
</abstract>
<kwd-group>
<kwd>microbial strain development</kwd>
<kwd>microbial diversity</kwd>
<kwd>multi-omics analysis</kwd>
<kwd>signaling pathways</kwd>
<kwd>sustainable agricultural applications</kwd>
</kwd-group>
<funding-group>
<award-group id="gs1">
<funding-source id="sp1">
<institution-wrap>
<institution>Ume&#xe5; Universitet</institution>
<institution-id institution-id-type="doi" vocab="open-funder-registry" vocab-identifier="10.13039/open_funder_registry">10.13039/501100004885</institution-id>
</institution-wrap>
</funding-source>
</award-group>
<funding-statement>The author(s) declared that financial support was received for this work and/or its publication. Ume&#xe5; University, Sweden, will provide APC.</funding-statement>
</funding-group>
<counts>
<fig-count count="1"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="8"/>
<page-count count="3"/>
<word-count count="578"/>
</counts>
<custom-meta-group>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Plant Symbiotic Interactions</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Perspective</title>
<p>As climate change worsens drought stress across agricultural landscapes, the urgency to develop resilient cropping systems has never been greater. While traditional breeding and genetic engineering have helped create drought-tolerant crops, microbial strategies- especially those involving beneficial plant-associated microorganisms- offer a complementary and sustainable solution (<xref ref-type="bibr" rid="B8">Vurukonda et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B5">Naylor et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B1">Allito et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B6">Shah et&#xa0;al., 2024</xref>; <xref ref-type="bibr" rid="B7">Sharma et&#xa0;al., 2025</xref>). In my opinion, integrating microbial interventions, particularly those guided by multi-omics approaches (<xref ref-type="bibr" rid="B4">Kumar et&#xa0;al., 2023</xref>; <xref ref-type="bibr" rid="B3">Jain et&#xa0;al., 2024</xref>), represents a transformative frontier in drought mitigation.</p>
<p>Recent studies have shown the effectiveness of developed <italic>Rhizobium</italic> strains in enhancing soil fertility and legume yields, especially in regions like Haryana, India (<xref ref-type="bibr" rid="B6">Shah et&#xa0;al., 2024</xref>). These strains not only boost nodulation and nitrogen fixation but also improve overall soil health, which is vital during drought conditions when nutrients are less available. Additionally, the use of digested distillery spent wash has demonstrated encouraging effects on chickpea (<italic>Cicer arietinum</italic>), enhancing nodulation, nutrient absorption, and photosynthesis- key traits that support drought tolerance (<xref ref-type="bibr" rid="B2">Gahlot et&#xa0;al., 2011</xref>).</p>
<p>What excites me most is the increasing adoption of multi-omics technologies- such as genomics, transcriptomics, proteomics, and metabolomics- to explore the complex molecular dialogue between plants and microbes. These tools offer a comprehensive view of how microbial communities impact plant stress responses, nutrient cycling, and immune regulation (<xref ref-type="bibr" rid="B4">Kumar et&#xa0;al., 2023</xref>; <xref ref-type="bibr" rid="B3">Jain et&#xa0;al., 2024</xref>). For instance, transcriptomic analyses have shown how microbial inoculants can activate drought-responsive genes, while metabolomics has identified microbial metabolites that function as osmo-protectants or signaling molecules.</p>
<p>Despite these advances, converting lab-based findings into practical field applications remains challenging. Soil heterogeneity, microbial competition, and environmental variability often reduce the effectiveness of inoculants. However, tailored microbial consortia- designed using omics-informed selection- could surmount these barriers by providing synergistic benefits across various agroecological zones.</p>
<p>The future of microbial drought mitigation depends on embracing ecological complexity and integrating technology. We need to move beyond single-strain inoculants and focus on precision microbiome engineering, backed by long-term field trials and farmer-participatory research. Microbial strategies are not a cure-all, but they align with regenerative agriculture principles, decrease reliance on chemicals, and build resilience in both plants and ecosystems.</p>
<p>As we face the realities of climate change, it is time to elevate microbes from supporting roles to leading players in the story of drought resilience. My conceptual overview of microbial strategies for drought resilience in various cropping systems for sustainable agriculture is shown in <xref ref-type="fig" rid="f1"><bold>Figure&#xa0;1</bold></xref>.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Conceptual overview of microbial strategies for drought resilience. The illustration emphasizes key themes: (i) the urgency of addressing climate change-induced drought stress in agriculture; (ii) microbial interventions as sustainable solutions; (iii) drought-tolerant legumes supported by <italic>Rhizobium</italic> strains; (iv) the role of digested distillery spent wash in enhancing chickpea nodulation and nutrient uptake; (v) integrating multi-omics approaches (genomics, transcriptomics, proteomics, metabolomics) to understand plant&#x2013;microbe interactions; and (vi) precision microbiome engineering for improved crop resilience under water-deficit conditions.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1740879-g001.tif">
<alt-text content-type="machine-generated">Illustration depicting the impact of climate change on agriculture and solutions. Top left shows a dry, barren plant with a sun, labeled &#x201c;Climate change worsens drought stress.&#x201d; Top right illustrates a healthy plant with a label about microbial interventions. Middle left features drought-tolerant legumes. Bottom left shows a plant with icons, labeled &#x201c;Multi-omics approaches for sustainable agriculture.&#x201d; Bottom right describes precision microbiome engineering with illustrations of bacteria around a plant.</alt-text>
</graphic></fig>
</sec>
</body>
<back>
<sec id="s2" sec-type="data-availability">
<title>Data availability statement</title>
<p>Publicly available datasets were analyzed in this study. This data can be found here: Cited References are Open-Access.</p></sec>
<sec id="s3" sec-type="author-contributions">
<title>Author contributions</title>
<p>KDG: Methodology, Formal Analysis, Writing &#x2013; review &amp; editing, Validation, Project administration, Supervision, Data curation, Writing &#x2013; original draft, Investigation, Software, Conceptualization, Funding acquisition, Visualization, Resources.</p></sec>
<sec id="s5" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p></sec>
<sec id="s6" sec-type="ai-statement">
<title>Generative AI statement</title>
<p>The author(s) declared that generative AI was not used in the creation of this manuscript.</p>
<p>Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.</p></sec>
<sec id="s7" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p></sec>
<ref-list>
<title>References</title>
<ref id="B1">
<mixed-citation publication-type="journal">
<person-group person-group-type="author">
<name><surname>Allito</surname> <given-names>B. B.</given-names></name>
<name><surname>Ewusi-Mensah</surname> <given-names>N.</given-names></name>
<name><surname>Logah</surname> <given-names>V.</given-names></name>
<name><surname>Hunegnaw</surname> <given-names>D. K.</given-names></name>
</person-group> (<year>2021</year>). 
<article-title>Legume-rhizobium specificity effect on nodulation, biomass production and partitioning of faba bean (<italic>Vicia faba</italic> L.)</article-title>. <source>Sci. Rep-Uk</source> <volume>11</volume>, <page-range>1&#x2013;13</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/s41598-021-83235-8</pub-id>, PMID: <pub-id pub-id-type="pmid">33574503</pub-id>
</mixed-citation>
</ref>
<ref id="B2">
<mixed-citation publication-type="journal">
<person-group person-group-type="author">
<name><surname>Gahlot</surname> <given-names>D. K.</given-names></name>
<name><surname>Kukreja</surname> <given-names>K.</given-names></name>
<name><surname>Suneja</surname> <given-names>S.</given-names></name>
<name><surname>Dudeja</surname> <given-names>S. S.</given-names></name>
</person-group> (<year>2011</year>). 
<article-title>Effect of digested distillery spent wash on nodulation, nutrient uptake and photosynthetic activity in chickpea (<italic>Cicer arietinum</italic>)</article-title>. <source>Acta Agronomica Hungarica</source> <volume>59</volume>, <fpage>73</fpage>&#x2013;<lpage>85</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1556/AAgr.59.2011.1</pub-id>
</mixed-citation>
</ref>
<ref id="B3">
<mixed-citation publication-type="journal">
<person-group person-group-type="author">
<name><surname>Jain</surname> <given-names>A.</given-names></name>
<name><surname>Sarsaiya</surname> <given-names>S.</given-names></name>
<name><surname>Singh</surname> <given-names>R.</given-names></name>
<name><surname>Gong</surname> <given-names>Q. H.</given-names></name>
<name><surname>Wu</surname> <given-names>Q.</given-names></name>
<name><surname>Shi</surname> <given-names>J. S.</given-names></name>
</person-group> (<year>2024</year>). 
<article-title>Omics approaches in understanding the benefits of plant-microbe interactions</article-title>. <source>Front. Microbiol.</source> <volume>15</volume>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmicb.2024.1391059</pub-id>, PMID: <pub-id pub-id-type="pmid">38860224</pub-id>
</mixed-citation>
</ref>
<ref id="B4">
<mixed-citation publication-type="journal">
<person-group person-group-type="author">
<name><surname>Kumar</surname> <given-names>U.</given-names></name>
<name><surname>Raj</surname> <given-names>S.</given-names></name>
<name><surname>Sreenikethanam</surname> <given-names>A.</given-names></name>
<name><surname>Maddheshiya</surname> <given-names>R.</given-names></name>
<name><surname>Kumari</surname> <given-names>S.</given-names></name>
<name><surname>Han</surname> <given-names>S.</given-names></name>
<etal/>
</person-group>. (<year>2023</year>). 
<article-title>Multi-omics approaches in plant-microbe interactions hold enormous promise for sustainable agriculture</article-title>. <source>Agronomy-Basel.</source> <volume>13</volume>, <page-range>1&#x2013;16</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/agronomy13071804</pub-id>
</mixed-citation>
</ref>
<ref id="B5">
<mixed-citation publication-type="journal">
<person-group person-group-type="author">
<name><surname>Naylor</surname> <given-names>D.</given-names></name>
<name><surname>DeGraaf</surname> <given-names>S.</given-names></name>
<name><surname>Purdom</surname> <given-names>E.</given-names></name>
<name><surname>Coleman-Derr</surname> <given-names>D.</given-names></name>
</person-group> (<year>2017</year>). 
<article-title>Drought and host selection influence bacterial community dynamics in the grass root microbiome</article-title>. <source>Isme J.</source> <volume>11</volume>, <fpage>2691</fpage>&#x2013;<lpage>2704</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ismej.2017.118</pub-id>, PMID: <pub-id pub-id-type="pmid">28753209</pub-id>
</mixed-citation>
</ref>
<ref id="B6">
<mixed-citation publication-type="journal">
<person-group person-group-type="author">
<name><surname>Shah</surname> <given-names>I. K.</given-names></name>
<name><surname>Sarim</surname> <given-names>K. M.</given-names></name>
<name><surname>Sikka</surname> <given-names>V. K.</given-names></name>
<name><surname>Dudeja</surname> <given-names>S. S.</given-names></name>
<name><surname>Gahlot</surname> <given-names>D. K.</given-names></name>
</person-group> (<year>2024</year>). 
<article-title>Developed rhizobium strains enhance soil fertility and yield of legume crops in Haryana, India</article-title>. <source>J. Basic Microb.</source> <volume>64</volume>, <page-range>1&#x2013;14</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1002/jobm.202400327</pub-id>, PMID: <pub-id pub-id-type="pmid">39021277</pub-id>
</mixed-citation>
</ref>
<ref id="B7">
<mixed-citation publication-type="journal">
<person-group person-group-type="author">
<name><surname>Sharma</surname> <given-names>A.</given-names></name>
<name><surname>Das</surname> <given-names>N.</given-names></name>
<name><surname>Pandey</surname> <given-names>P.</given-names></name>
<name><surname>Shukla</surname> <given-names>P.</given-names></name>
</person-group> (<year>2025</year>). 
<article-title>Plant-microbiome responses under drought stress and their metabolite-mediated interactions towards enhanced crop resilience</article-title>. <source>Curr. Plant Biol.</source> <volume>43</volume>, <page-range>1&#x2013;22</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.cpb.2025.100513</pub-id>
</mixed-citation>
</ref>
<ref id="B8">
<mixed-citation publication-type="journal">
<person-group person-group-type="author">
<name><surname>Vurukonda</surname> <given-names>S. S. K. P.</given-names></name>
<name><surname>Vardharajula</surname> <given-names>S.</given-names></name>
<name><surname>Shrivastava</surname> <given-names>M.</given-names></name>
<name><surname>SkZ</surname> <given-names>A.</given-names></name>
</person-group> (<year>2016</year>). 
<article-title>Enhancement of drought stress tolerance in crops by plant growth promoting rhizobacteria</article-title>. <source>Microbiol. Res.</source> <volume>184</volume>, <fpage>13</fpage>&#x2013;<lpage>24</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.micres.2015.12.003</pub-id>, PMID: <pub-id pub-id-type="pmid">26856449</pub-id>
</mixed-citation>
</ref>
</ref-list>
<fn-group>
<fn id="n1" fn-type="custom" custom-type="edited-by">
<p>Edited by: <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/755930">Shixiao Yu</ext-link>, Sun Yat-sen University, China</p></fn>
<fn id="n2" fn-type="custom" custom-type="reviewed-by">
<p>Reviewed by: <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/3278658">Yulia Makova</ext-link>, Siberian Institute of Plant Physiology and Biochemistry SB RAS, Russia</p></fn>
</fn-group>
</back>
</article>