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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2025.1663361</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Optimal row configuration in jujube-cotton intercropping systems increases cotton yield by enhancing growth characteristics and photosynthetically active radiation in arid region</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Jinbin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Peijuan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Xiaofei</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1469542/overview"/>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Cui</surname>
<given-names>Zhengjun</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Ling</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/3183524/overview"/>
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<contrib contrib-type="author">
<name>
<surname>Hu</surname>
<given-names>Qiang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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<contrib contrib-type="author">
<name>
<surname>Qiao</surname>
<given-names>Hang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Wei</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
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<contrib contrib-type="author" corresp="yes">
<name>
<surname>Wan</surname>
<given-names>Sumei</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
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<contrib contrib-type="author" corresp="yes">
<name>
<surname>Chen</surname>
<given-names>Guodong</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
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<aff id="aff1">
<sup>1</sup>
<institution>College of Agriculture, Tarim University</institution>, <addr-line>Alar</addr-line>,&#xa0;<country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Key Laboratory of Genetic Improvement and Efficient Production for Specialty Crops in Arid Southern Xinjiang of Xinjiang Corps, Tarim University</institution>, <addr-line>Alar</addr-line>,&#xa0;<country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>State Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences</institution>, <addr-line>Anyang</addr-line>,&#xa0;<country>China</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>College of Agriculture, Shihezi University</institution>, <addr-line>Shihezi</addr-line>,&#xa0;<country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2988201/overview">Bibi Rafeiza Khan</ext-link>, University of Scranton, United States</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/307033/overview">Hukum Singh</ext-link>, Forest Research Institute (FRI), India</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1107785/overview">Krishan K. Verma</ext-link>, Guangxi Academy of Agricultural Sciences, China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Sumei Wan, <email xlink:href="mailto:wansumei510@163.com">wansumei510@163.com</email>; Guodong Chen, <email xlink:href="mailto:guodongchen@taru.edu.cn">guodongchen@taru.edu.cn</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>26</day>
<month>09</month>
<year>2025</year>
</pub-date>
<pub-date pub-type="ecorrected">
<day>29</day>
<month>10</month>
<year>2025</year>
</pub-date>
<pub-date pub-type="collection">
<year>2025</year>
</pub-date>
<volume>16</volume>
<elocation-id>1663361</elocation-id>
<history>
<date date-type="received">
<day>10</day>
<month>07</month>
<year>2025</year>
</date>
<date date-type="accepted">
<day>08</day>
<month>09</month>
<year>2025</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2025 Wang, Wang, Li, Cui, Li, Hu, Qiao, Zhang, Wan and Chen.</copyright-statement>
<copyright-year>2025</copyright-year>
<copyright-holder>Wang, Wang, Li, Cui, Li, Hu, Qiao, Zhang, Wan and Chen</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Background</title>
<p>In southern Xinjiang, intercropping cotton with jujube trees improves resource use efficiency and boosts farmers' economic benefits compared to monoculture jujube systems. However, the optimal row configuration for cotton in jujube-cotton intercropping systems remain unclear. </p>
</sec>
<sec>
<title>Methods</title>
<p>This study investigated the effects of cotton row configurations [2 rows (IC2), 4 rows (IC4), and 6 rows (IC6)] on cotton growth characteristics, photosynthetically active radiation (PAR), yield, and land equivalent ratio (LER) in jujube-cotton intercropping systems.</p>
</sec>
<sec>
<title>Results</title>
<p>The leaf area index (LAI) and leaf area duration (LAD) followed the order of IC6 &gt; IC4 &gt; IC2. The intercepted PAR was improved with the increasing rows of cotton, while the transmitted PAR showed a decreasing trend. Dry matter accumulation (DMA) under IC2 and IC4 decreased by approximately 71% and 36% respectively, compared to IC6. While DMA under IC2 was 54.9% lower than that under IC4. Cotton yield under IC6 increased by approximately 98% and 31% compared to IC2 and IC4, respectively, which demonstrated a 51% significant improvement under IC4 compared to IC2. IC4 and IC6 exhibited a higher LER than IC2. However, the jujube yield under IC6 was lower compared to IC2 and IC4. The total yield under IC4 was higher than that under IC2 and IC6. As the number of cotton rows increased, the rate of improvement in cotton growth characteristics demonstrated a diminishing trend. Cotton yield was significantly correlated with LAI, PAR, and DMA. PAR showed significant relationships with LAI and DMA.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>Taken together, four rows' cotton planted between jujube trees is recommended for achieve high crop production in the jujube-cotton intercropping system of South Xinjiang region.</p>
</sec>
</abstract>
<kwd-group>
<kwd>jujube-cotton intercropping</kwd>
<kwd>four rows</kwd>
<kwd>photosynthetically active radiation</kwd>
<kwd>growth characteristics</kwd>
<kwd>total yield</kwd>
</kwd-group>
<counts>
<fig-count count="11"/>
<table-count count="0"/>
<equation-count count="6"/>
<ref-count count="51"/>
<page-count count="15"/>
<word-count count="5749"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Crop and Product Physiology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Southern Xinjiang is a typical arid region in China, characterized by abundant sunlight and ample thermal resources. However, its ecologically environment faces severe challenges, including soil desertification, impoverishment, and salinization, which significantly limit sustainable agricultural development in the area (<xref ref-type="bibr" rid="B45">Yu et&#xa0;al., 2022</xref>). The jujube tree (<italic>Ziziphus jujuba</italic> Mill.) is a heliophilous species with high light requirements, which exhibits strong adaptability to diverse soil types, tolerancing poor, saline, and alkaline soils (<xref ref-type="bibr" rid="B22">Liu et&#xa0;al., 2020</xref>). In recent years, Xinjiang&#x2019;s jujube cultivation industry has witnessed remarkable growth, emerging as a key pillar of the region&#x2019;s economy (<xref ref-type="bibr" rid="B21">Li et&#xa0;al., 2023</xref>). However, due to the limited availability of arable land (<xref ref-type="bibr" rid="B47">Zhang et&#xa0;al., 2022</xref>), expanding the jujube trees cultivation area will inevitably lead to a reduction in the planting area for other crops. Moreover, during the sapling stage of jujube trees (less than 10 years), the jujube yield is relatively low, leading to underutilization of land resources (<xref ref-type="bibr" rid="B33">Wang et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B49">Zhang et&#xa0;al., 2019</xref>). Cotton (<italic>Gossypium hirsutum</italic> L.) is an salt-alkali tolerant crop, studies demonstrate that intercropping cotton with jujube trees enhances resource use efficiency and productivity (<xref ref-type="bibr" rid="B2">Ai et&#xa0;al., 2021b</xref>; <xref ref-type="bibr" rid="B20">Li et&#xa0;al., 2014</xref>), while mitigating wind erosion and stabilizing sand (<xref ref-type="bibr" rid="B35">Wang X. et&#xa0;al., 2022</xref>), thus promoting sustainable agricultural production.</p>
<p>The jujube-cotton intercropping system represents a primary eco-agroforestry model in southern Xinjiang. This composite system demonstrates remarkable capabilities in optimizing interspecific relationships, improving microclimates, enhancing micro-ecosystems, and boosting economic returns (<xref ref-type="bibr" rid="B35">Wang X. et&#xa0;al., 2022</xref>). It plays a vital role in ecological restoration and agricultural development in the arid regions of southern Xinjiang, particularly in areas challenged by saline-alkali soils, sandy winds, and poor soil conditions (<xref ref-type="bibr" rid="B3">Cao et&#xa0;al., 2025</xref>; <xref ref-type="bibr" rid="B37">Wang et&#xa0;al., 2017</xref>). Jujube-cotton intercropping can reduce evaporation-induced water loss, increase cotton yield, and improve land use efficiency, thereby increasing farmers&#x2019; income (<xref ref-type="bibr" rid="B2">Ai et&#xa0;al., 2021b</xref>; <xref ref-type="bibr" rid="B32">Wang et&#xa0;al., 2024</xref>, <xref ref-type="bibr" rid="B33">2016</xref>). Optimizing crop management measures in jujube-cotton intercropping system synergistically balances productivity, greenhouse gas mitigation, and soil carbon sequestration (<xref ref-type="bibr" rid="B3">Cao et&#xa0;al., 2025</xref>). However, In the jujube-cotton intercropping system, the root systems of jujube trees and cotton plants inevitably exhibit ecological niche overlap, leads to competition for nutrients and water, consequently altering nutrient cycling within the system (<xref ref-type="bibr" rid="B1">Ai et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B12">Homulle et&#xa0;al., 2022</xref>). Moreover, the canopy overlap between jujube trees and cotton creates competition for photosynthetic characteristics and PAR, which reduces light energy utilization efficiency, ultimately resulting in declined cotton yield (<xref ref-type="bibr" rid="B50">Zhang et&#xa0;al., 2014</xref>). Therefore, in the jujube-cotton intercropping system, improper cotton row configuration or inadequate planting density management can intensify intercropping competition.</p>
<p>Optimizing the row spacing configuration and planting density increases the leaf area index, improves PAR distribution within the crop canopy, enhances photosynthetic efficiency, and promotes dry matter accumulation, and achieves high crop yields (<xref ref-type="bibr" rid="B14">Hu et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B51">Zuo et&#xa0;al., 2024</xref>). <xref ref-type="bibr" rid="B51">Zuo et&#xa0;al. (2024)</xref> found that a uniform row spacing configuration of 76&#xa0;cm with high density optimized the spatial distribution of leaves and bolls, resulting in a higher photosynthetic efficiency and yield. Meanwhile, <xref ref-type="bibr" rid="B11">Gao et&#xa0;al. (2024)</xref> showed that a three-row planting pattern under one film (with a row spacing of 76&#xa0;cm and plant spacing of 7&#xa0;cm) improved the microenvironment of the cotton canopy and enhanced the light energy utilization rate in the middle and lower layers but did not increase the cotton yield. <xref ref-type="bibr" rid="B48">Zhang et&#xa0;al. (2021)</xref> demonstrated that optimizing light energy transmission to the lower canopy enhanced light interception in this region, thereby promoting the development of reproductive structure, thus increased both boll number and weight in the lower canopy, ultimately enhancing yields. However, the optimal light interception rate in intercropping systems is different from with monoculture systems (<xref ref-type="bibr" rid="B24">Mao et&#xa0;al., 2016</xref>). Light interception is primarily influenced by row spacing in intercropping cropping systems, followed by plant population density (<xref ref-type="bibr" rid="B24">Mao et&#xa0;al., 2016</xref>). Additionally, in jujube-cotton intercropping systems, improper arrangement of cotton planting rows may reduce light energy utilization efficiency due to the shading effect of jujube trees (<xref ref-type="bibr" rid="B50">Zhang et&#xa0;al., 2014</xref>). Therefore, the optimal row configuration for cotton in jujube-cotton intercropping systems remain unclear.</p>
<p>We hypothesized that an optimal number of cotton rows would increase leaf area index, reduce canopy light transmittance, and enhance light interception, thereby promoting dry matter accumulation and improving yield. Based on this hypothesis, the main objectives of this study were to investigate the following in the jujube-cotton intercropping system: 1) the effects of row configurations on the leaf area index (LAI) and PAR in cotton; 2) the impacts of row configurations on cotton growth characteristics and yield; and 3) the relationships of cotton yield with growth characteristics and PAR under different row configurations. This study systematically investigated the effects of different row configurations on cotton growth characteristics and yield in jujube-cotton intercropping. The present results provide theoretical and technological support for high-yield and high-efficiency production in the jujube-cotton intercropping system in southern Xinjiang.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Site description</title>
<p>This study was conducted in 2020 and 2021 at the Horticultural Experimental Station of Tarim University in Alar, Xinjiang (N40&#xb0;32&#x2019;34&#x201d;, E81&#xb0;18&#x2019;07&#x201d;, elevation 1015&#xa0;m). The experimental area features a warm temperate extreme continental arid desert climate, with an annual solar radiation ranging from 5594.0 to 6121.2 MJ m<sup>&#x2013;2</sup> and annual sunshine duration of 2556.3 to 2991.8&#xa0;h, corresponding to a sunshine percentage of 58.69%. The frost-free period lasts 180&#x2013;224 d. Characterized by scarce rainfall, minimal winter snowfall, and intense surface evaporation, the region receives an average annual precipitation of 40.1-82.5&#xa0;mm and experiences an annual evaporation of 1876.6-2558.9&#xa0;mm. During the 2020 and 2021 cotton growing seasons, rainfall measured 17.7 and 50.6&#xa0;mm, respectively, with total solar radiation reaching 3606.8 and 3718.69 MJ m<sup>&#x2013;2</sup>, respectively (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). The soil properties were as follows: pH 7.90; organic matter content, 11.20&#xa0;g kg<sup>&#x2013;1</sup>; total nitrogen, 1.51&#xa0;g kg<sup>&#x2013;1</sup>; available phosphorus, 58.70 mg kg<sup>&#x2013;1</sup>; and available potassium, 107.34 mg kg<sup>&#x2013;1</sup>.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Precipitation and global radiation at experimental site in 2020 and 2021.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1663361-g001.tif">
<alt-text content-type="machine-generated">Two line graphs compare precipitation and global radiation for 2020 and 2021. The left graph shows precipitation in millimeters, with higher peaks in 2021. The right graph displays global radiation in megajoules per square meter, with similar patterns for both years, but 2020 having slightly higher values.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Experimental design</title>
<p>This study adopted a single-factor randomized block design with five treatments: monoculture jujube (MJ), monoculture cotton (MC), and three intercropping systems of jujube with two rows (IC2), four rows (IC4), and six rows (IC6) of cotton. The experiment included three replicates, with each plot covering an area of 120 m<sup>2</sup>. The experimental jujube orchard was established in 2012 by direct seeding of wild jujube (<italic>Ziziphus jujuba</italic> var. <italic>spinosa</italic>) that was grafted with Huizao jujube (<italic>Ziziphus jujuba</italic> &#x2018;Huizao&#x2019;) in 2014 and underwent stumping treatment in 2019. The jujube trees were arranged with a planting spacing of 3&#xa0;m &#xd7; 1&#xa0;m. The cotton variety was &#x2018;Tahe No. 2&#x2019;, with a distance between plants of 11.5&#xa0;cm, with sowing dates on April 23, 2020, and April 11, 2021. Topping operations were conducted on July 14, 2020, and July 10, 2021, and harvesting occurred on October 23, 2020, and October 17, 2021, respectively. Jujube trees initiate leaf emergence in early May and were harvested in mid-October.</p>
<p>Fertilizer application and irrigation methods involved the setup of drip irrigation tape in both monoculture and intercropping systems, with irrigation and fertilization carried out simultaneously. During the two-year experiment, the fertilization rates and irrigation schedules remained consistent across all crop growth stages. Compound fertilizer (N:P<sub>2</sub>O<sub>5</sub>:K<sub>2</sub>O = 26:13:0) was utilized at a rate of 1305&#xa0;kg ha<sup>&#x2013;1</sup>, and over 80% of the water consumed during the crop growth period was supplied through irrigation.</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Measurements</title>
<sec id="s2_3_1">
<label>2.3.1</label>
<title>LAI and LAD</title>
<p>The LAI of cotton was measured using an LAI 2200C plant canopy analyzer (Li-COR Company of the United States) during the seedling, budding, flowering&#x2013;boll, and boll opening stages in 2020 and 2021. Based on the LAI, the leaf area duration (LAD) was calculated as follows (<xref ref-type="bibr" rid="B36">Wang et&#xa0;al., 2021</xref>):</p>
<disp-formula id="eq1">
<mml:math display="block" id="M1">
<mml:mrow>
<mml:mtext>LAD</mml:mtext>
<mml:mo>=</mml:mo>
<mml:munderover>
<mml:mo>&#x2211;</mml:mo>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mi>n</mml:mi>
</mml:munderover>
<mml:mo stretchy="false">(</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mtext>LAI</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>+</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mtext>LAI</mml:mtext>
</mml:mrow>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:mfrac>
<mml:mo>&#xd7;</mml:mo>
<mml:mtext>D</mml:mtext>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where LAD represents the total leaf area duration of cotton throughout the entire growth period; LAI<sub>i</sub> and LAI<sub>(i+1)</sub> denote the LAI of cotton at the (i)-th and (i+1)-th sampling events, respectively; and D indicates the number of days between two consecutive samplings.</p>
</sec>
<sec id="s2_3_2">
<label>2.3.2</label>
<title>PAR, Tr, and IN</title>
<p>In 2020 and 2021, the PAR distribution was measured within different canopy layers of experimental plots using a LI-COR 250A linear quantum sensor at the cotton budding and flowering-boll stages, respectively. Measurements were conducted under clear and windless weather conditions between 12:00 and 13:00 in areas of the plots with uniform growth. The horizontal measurement distance spanned 0&#x2013;165 cm in all plots, and the vertical measurement distance covered 0&#x2013;60 cm during the squaring stage and 0&#x2013;100 cm during the flowering&#x2013;boll stage. Horizontal measurements were taken at 15-cm intervals from left to right, and vertical measurements at 20-cm intervals from bottom to top.</p>
<p>To address potential errors in PAR measurements caused by transient weather variations during the observation period, which could lead to incomplete synchronization of PAR measurements across treatments, this study employed relative values (transmitted PAR rate (Tr) and intercepted PAR rate (IN)) to mitigate such discrepancies. Tr and IN were calculated using the following equations (<xref ref-type="bibr" rid="B40">Xue et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B48">Zhang et&#xa0;al., 2021</xref>).</p>
<disp-formula id="eq2">
<mml:math display="block" id="M2">
<mml:mrow>
<mml:mtext>Tr</mml:mtext>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mtext>PAR</mml:mtext>
</mml:mrow>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mtext>PAR</mml:mtext>
</mml:mrow>
<mml:mi>I</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<disp-formula id="eq3">
<mml:math display="block" id="M3">
<mml:mrow>
<mml:mtext>IN</mml:mtext>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mtext>PAR</mml:mtext>
</mml:mrow>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mtext>PAR</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mtext>PAR</mml:mtext>
</mml:mrow>
<mml:mi>I</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where PAR<sub>I</sub> is the incident PAR at the top of the canopy (&#x3bc;mol m<sup>&#x2013;2</sup> s<sup>&#x2013;1</sup>), and PAR<sub>i</sub> and PAR<sub>i-1</sub> are the incident PAR at canopy heights i-th and (i-1)-th of the canopy, respectively. At the budding stage, i represents 60, 40, and 20&#xa0;cm, and i-1 represents 40&#xa0;cm, 20&#xa0;cm, and the surface. At the flowering&#x2013;boll stage, i represents 100, 80, 60, 40, and 20&#xa0;cm, and i-1 represents 80, 60, 40, and 20&#xa0;cm and the surface.</p>
</sec>
<sec id="s2_3_3">
<label>2.3.3</label>
<title>Dry matter accumulation and distribution</title>
<p>Dry matter accumulation was determined by the method described by <xref ref-type="bibr" rid="B6">Dai et&#xa0;al. (2015)</xref>. In 2020 and 2021, five cotton plants were randomly selected from each plot during the seedling, budding, flowering-boll, and boll opening stages. The samples were transported to the laboratory, where they were initially deactivated in a 105&#xb0;C oven for 30&#xa0;min and then dried at 80&#xb0;C until reaching a constant weight. After weighing, the dry matter accumulation was converted to per hectare values. At the cotton boll opening stage, the dry matter accumulation in leaves, stems, bolls, and lint were measured, and the dry matter distribution rate for each organ was calculated.</p>
</sec>
<sec id="s2_3_4">
<label>2.3.4</label>
<title>Crop growth rate and net assimilation rate</title>
<p>The crop growth rate refers to the increase in dry matter weight per unit time (kg ha<sup>&#x2212;1</sup> d<sup>&#x2212;1</sup>). The net assimilation rate represents the dry matter accumulation per unit leaf area during a specific growth period (kg ha<sup>&#x2212;1</sup> d<sup>&#x2212;1</sup>). The specific calculation equations were as follows (<xref ref-type="bibr" rid="B44">Yin et&#xa0;al., 2017</xref>):</p>
<disp-formula id="eq4">
<mml:math display="block" id="M4">
<mml:mrow>
<mml:mtext>CGR</mml:mtext>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mtext>D</mml:mtext>
<mml:mn>2</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mtext>D</mml:mtext>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mtext>T</mml:mtext>
<mml:mn>2</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mtext>T</mml:mtext>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<disp-formula id="eq5">
<mml:math display="block" id="M5">
<mml:mrow>
<mml:mtext>NAR</mml:mtext>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mtext>D</mml:mtext>
<mml:mn>2</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mtext>D</mml:mtext>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mtext>T</mml:mtext>
<mml:mn>2</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mtext>T</mml:mtext>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#xd7;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mtext>Ln</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mtext>Ln</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mtext>L</mml:mtext>
<mml:mn>2</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mtext>L</mml:mtext>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where CGR and NAR represent the crop growth rate and net assimilation rate of cotton, respectively; D1 and D2 denote the dry matter accumulation of cotton during the T1 and T2 stages, respectively; and L1 and L2 indicate the leaf area of cotton at the T1 and T2 stages, respectively.</p>
</sec>
<sec id="s2_3_5">
<label>2.3.5</label>
<title>Yield and LER</title>
<p>Cotton and jujube were harvested by plot at the physiological maturity stage, and the yield was determined, with the final results converted to kg ha<sup>&#x2013;1</sup>. The total yield in the intercropping system was equal to the sum of the jujube and cotton yields.</p>
<p>The land equivalent ratio (LER) is used to evaluate land productivity in intercropping systems. The specific calculation equation was as follows (<xref ref-type="bibr" rid="B38">Wiley, 1979</xref>):</p>
<disp-formula id="eq6">
<mml:math display="block" id="M6">
<mml:mrow>
<mml:mtext>LER</mml:mtext>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mtext>Y</mml:mtext>
<mml:mrow>
<mml:mtext>IC</mml:mtext>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mtext>Y</mml:mtext>
<mml:mrow>
<mml:mtext>MC</mml:mtext>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:mo>+</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mtext>Y</mml:mtext>
<mml:mrow>
<mml:mtext>IJ</mml:mtext>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mtext>Y</mml:mtext>
<mml:mrow>
<mml:mtext>MJ</mml:mtext>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where YIC and YIJ represent the yields of cotton and jujube, respectively, in the intercropping system, and YMC and YMJ denote the yields of cotton and jujube, respectively, in the monoculture systems. LER &gt; 1 indicates that intercropping has a yield advantage; LER&lt; 1 indicates no intercropping advantage.</p>
</sec>
</sec>
<sec id="s2_4">
<label>2.4</label>
<title>Data analysis</title>
<p>Statistical analysis was performed using SPSS 20.0 (SPSS Inc., Chicago, IL, USA) for analysis of variance (ANOVA). The least significant difference (LSD) method at the P&lt; 0.05 level was applied to identify significant differences among treatments. Pearson correlation analysis and principal component analysis were used to evaluate the relationship between cotton yield and LAI, LAD, PAR, dry matter accumulation, growth rate, and net assimilation rate. Figures were plotted using Sigmaplot 12.5 and Origin 21.0.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Result</title>
<sec id="s3_1">
<label>3.1</label>
<title>Response of LAI and LAD to row configuration</title>
<p>As cotton developed, LAI initially increased then decreased, peaking at the flowering-boll stage (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). The mean LAI under IC2, IC4, and IC6 decreased by approximately 50%, 22%, and 9%in 2020 and by 42%, 23%, and 13%in 2021, compared to the MC treatment, respectively. In the intercropping system, LAI under IC6 increased by 83% and 13% in 2020 and by 51% and 13% in 2021, compared to IC4 and IC2, respectively. LAI under IC4 improved by 62% in 2020 and 33% in 2021compared to IC2, respectively. The mean LAD under IC2, IC4, and IC6 decreased by 49%, 19%, and 8% in 2020 and by 44%, 28%, and 18%in 2021, compared to MC, respectively. LAD under IC6 increased by 80% and 60% in 2020 and by 45% and 28% in 2021 compared to IC4 and IC2, respectively. LAD under IC4 showed increases of 13% both in 2020 and 2021compared to IC2, respectively. Therefore, as planting rows increased, both the LAI and LAD of cotton rose, though the increments observed between IC2 and IC4 were greater than those between IC4 and IC6.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Leaf area index (LAI) and at different growth stages leaf area duration (LAD) under different treatments in 2020 and 2021. IC2, IC4, and IC6 represent jujube intercropped with two, four, and six rows of cotton; MC, monoculture cotton. Different lowercase letters indicate significant differences among treatments at <italic>p&lt;</italic> 0.05.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1663361-g002.tif">
<alt-text content-type="machine-generated">Bar charts showing LAI and LAD measurements for cotton plants under different treatments in 2020 and 2021. Top chart compares LAI during seeding, budding, flowering-boll, and boll opening stages for IC2, IC4, IC6, and MC treatments. Bottom chart compares LAD across the same treatments in both years. Bars are color-coded and labeled with letters indicating statistical significance.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Response of PAR to the row configuration</title>
<p>Compared to MC, the Tr at the cotton budding stage under IC2, IC4, and IC6 decreased by 5.5%, 24.9%, and 47.1% in 2020, respectively (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>), increased by 27.5% and 5.8% under IC2 and IC4 but decreased by 10.0% under IC6 in 2021, respectively. In the intercropping system, the Tr following the pattern of IC2 &gt; IC4 &gt; IC6. Compared to MC, the Tr at the flowering-boll stage under IC2, IC4, and IC6 increased by 61.0%, 47.5%, and 7.1% in 2020, respectively, IC2 and IC4 showed increases of 53.9% and 18.5%, respectively, while IC6 exhibited an 11.5% decrease in 2021(<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). Compared to IC6, the Tr under IC2 and IC4 showed increases of 50.3% and 37.6% in 2020, of 73.9% and 33.9% in 2021, respectively. Additionally, the Tr under IC2 was increased by 9.2% in 2020 and 29.9% in 2021, compared to IC4 respectively.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Transmitted PAR rate (%) at the budding stage under different treatments in 2020 and 2021. IC2, IC4, and IC6 represent jujube intercropped with two, four, and six rows of cotton; MC, monoculture cotton.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1663361-g003.tif">
<alt-text content-type="machine-generated">Six contour plots display vertical and horizontal positions in centimeters, comparing data from 2020 and 2021. Each plot, labeled IC2, IC4, IC6, and MC, uses a color gradient from red (high values) to blue (low values). The color distribution indicates variations across different positions and years.</alt-text>
</graphic>
</fig>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Transmitted PAR rate (%) at the flowering-boll stage under different treatments in 2020 and 2021. IC2, IC4, and IC6 represent jujube intercropped with two, four, and six rows of cotton; MC, monoculture cotton.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1663361-g004.tif">
<alt-text content-type="machine-generated">Contour plots showing vertical position in centimeters against horizontal position in centimeters for different sites (IC2, IC4, IC6, MC) over two years, 2020 and 2021. Color gradients indicate varying levels, with red denoting higher values and blue lower values, highlighting changes in distribution across the sites and years.</alt-text>
</graphic>
</fig>
<p>IN at the budding stage exhibited the pattern of IC6 &gt; IC4 &gt; IC2 in both 2020 and 2021 (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>). The IN under IC6 increased by approximately 77% and 6% in 2020 and by 71% and 26% in 2021 compared to IC2 and IC4, respectively. The IN under IC4 showed increases of 67% in 2020 and 36% in 2021, compared to IC2, respectively. Compared to MC, the IN under IC2, IC4, and IC6 at the flowering-boll stage decreased by 43%, 35%, and 5%in 2020, respectively; these showed reductions of 41%, 10.0%, and &#x2212;4% in 2021, respectively (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>). Compared to IC2 and IC4, the IN under IC6 increased by 66% and 40%in 2020 and by 44% and 13%in 2021, respectively. Additionally, the IN under IC4 demonstrated improvements of 13% in 2020 and 35% in 2021 compared to IC2, respectively.</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Intercepted PAR rate (%) at the budding stage under different treatments in 2020 and 2021. IC2, IC4, and IC6 represent jujube intercropped with two, four, and six rows of cotton; MC, monoculture cotton.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1663361-g005.tif">
<alt-text content-type="machine-generated">Contour plots comparing changes over 2020 and 2021 for IC2, IC4, IC6, and MC, with horizontal positions in centimeters on the x-axis and vertical positions in centimeters on the y-axis. Color gradients range from red to blue, indicating differing value concentrations.</alt-text>
</graphic>
</fig>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Intercepted PAR rate (%) at the flowering-boll stage under different treatments in 2020 and 2021. IC2, IC4, and IC6 represent jujube intercropped with two, four, and six rows of cotton; MC, monoculture cotton.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1663361-g006.tif">
<alt-text content-type="machine-generated">Contour plots showing vertical and horizontal positions in centimeters with color gradients indicating different values. The left column represents data from 2020, and the right column represents data from 2021. Locations labeled IC2, IC4, IC6, and MC display variations in measurements using a spectrum from red to blue, where red represents lower values and blue represents higher values. Each plot highlights changes over the two years at each location.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Response of dry matter accumulation and distribution to the row configuration</title>
<p>Compared to MC, the mean DMA under IC2, IC4, and IC6 showed significant decreases of 79.0%, 52.0%, and 28.8%, in 2020 and 78.6%, 53.1%, and 25.2%, in 2021, respectively (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>). Across both years, the mean DMA under IC2 and IC4 was significantly reduced by 71.0% and 35.6% compared to IC6, under IC2 showed a significant decrease of 54.9% compared to IC4. Compared to MC, IC2, IC4, and IC6 reduced stem and leaf allocation at the boll opening stage of cotton but increased the boll allocation ratio in 2020. In 2021, boll allocation under IC2 significantly increased by 30.5%, 28.4%, and 32.5%, compared to the MC, IC4, and IC6 treatments, respectively. Concurrently, the stem and leaf allocation under IC2 significantly decreased by 28.1%, 27.0%, and 29.1% compared to the MC, IC4, and IC6 treatments, respectively.</p>
<fig id="f7" position="float">
<label>Figure&#xa0;7</label>
<caption>
<p>Dry matter accumulation at different growth stages and dry matter distribution at the boll opening stage under different treatments in 2020 and 2021. IC2, IC4, and IC6 represent jujube intercropped with two, four, and six rows of cotton; MC, monoculture cotton. Different lowercase letters indicate significant differences among treatments at <italic>p&lt;</italic> 0.05.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1663361-g007.tif">
<alt-text content-type="machine-generated">Two bar graphs show dry matter accumulation (DMA) and distribution in different plant parts during 2020 and 2021. The top graphs illustrate DMA across growth stages for four treatments: IC2, IC4, IC6, and MC. The bottom graphs display the percentage distribution in leaf, stem, boll, and flock. Differences across treatments and years are indicated by letter labels.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s3_4">
<label>3.4</label>
<title>Response of the CGR and NAR to the row configuration</title>
<p>Compared to MC, the CGR under IC2, IC4, and IC6 treatments significantly decreased by approximately 79%, 54%, and 27% in 2020 and by 79%, 51%, and 24%in 2021, respectively (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8</bold>
</xref>). Similarly, the NAR significantly decreased by 59%, 42%, and 19% in 2020and by 61%, 39%, and 14% in 2021, respectively. Compared to IC6, CGR was significantly reduced by 71% and 37% in 2020 and by 73% and 36% in 2021 under IC2 and IC4 treatments, respectively; NAR was significantly reduced by 48% and 28% in 2020, by 55% and 29% in 2021, respectively. In addition, the CGR and NAR under IC2 were significantly lower than those under IC4 by 55% and 29% in 2020, by 57% and 37%in 2021, respectively.</p>
<fig id="f8" position="float">
<label>Figure&#xa0;8</label>
<caption>
<p>Crop growth rate (CGR) and net assimilation rate (NAR) at different period in 2020 and 2021. So-Se, Sowing to Seeding; Se-Bu, Seeding to Budding; Bu-Fb, Budding to Flowering&#x2013;boll, Fb-Bp, Flowering and boll to Boll opening. IC2, IC4, and IC6 represent jujube intercropped with two, four, and six rows of cotton; MC, monoculture cotton. Different lowercase letters indicate significant differences among treatments at <italic>p&lt;</italic> 0.05.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1663361-g008.tif">
<alt-text content-type="machine-generated">Bar charts compare growth characteristics ratios (GCR) and net assimilation rates (NAR) for four treatments: IC2, IC4, IC6, and MC across two years, 2020 and 2021. The categories, So-Se, Se-Bu, Bu-Fb, Fb-Bp, show varying performances of each treatment, with MC generally having higher values, particularly in Fb-Bp for both GCR and NAR. The letters a, b, c, and d indicate statistical significance.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s3_5">
<label>3.5</label>
<title>Response of crop yield and LER to the row configuration</title>
<p>The yields of cotton and jujube in the intercropping system were lower than those in the corresponding monocropping treatments (<xref ref-type="fig" rid="f9">
<bold>Figure&#xa0;9</bold>
</xref>). cotton yield under IC2, IC4, and IC6 treatments were approximately 59%, 40%, and 19% lower in 2020, and were 62%, 41%, and 25% lower in 2021 compared to MC. Compared to MJ, jujube yield was 21%, 35%, and 62% lower in 2020, was12%, 22%, and 44% lower in 2021 under IC2, IC4, and IC6, respectively. Compared to IC2 and IC4, IC6 significantly increased cotton yield by 98% and 31%, while significantly decreased jujube yield by 43% and 34%, respectively. IC4 significantly increased cotton yield by 51%, but decreased jujube yield by 13% compared to IC2. The total yield under IC4 was increased by 5% and 4% in 2020 and by 11% and 4% in 2021 compared to the IC2 and IC4 treatments, respectively. IC4 and IC6 significantly increased the LER by 10% and 5%, compared to IC2 in 2021, respectively.</p>
<fig id="f9" position="float">
<label>Figure&#xa0;9</label>
<caption>
<p>Yield and land equivalent ratio (LER) under different treatments in 2020 and 2021. IC2, IC4, and IC6 represent jujube intercropped with two, four, and six rows of cotton; MC, monoculture cotton. MJ, monoculture jujube. Different lowercase letters indicate significant differences among treatments at <italic>p</italic>&#xa0;&lt;&#xa0;0.05.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1663361-g009.tif">
<alt-text content-type="machine-generated">Four bar graphs showing comparison of crop yields and land equivalent ratio (LER) for IC2, IC4, IC6, and MC/MJ treatments in 2020 and 2021. Top left graph shows cotton yield, with MC having the highest in 2021. Top right shows jujube yield, with MJ highest in both years. Bottom left shows total yield, consistent across treatments in 2020. Bottom right shows LER, with IC4 highest in 2021. Bars are color-coded to match treatment types.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s3_6">
<label>3.6</label>
<title>Cotton yield in relation to LAI, PAR, and growth characteristics</title>
<p>Correlation analysis showed that cotton yield was significantly correlated with LAI, LAD, CGR, NAR, and PAR (Tr and IN at the flowering-boll stage) (<xref ref-type="fig" rid="f10">
<bold>Figure&#xa0;10</bold>
</xref>). PAR was significantly correlated with LAI and LAD; DRA and CGR were significantly correlated with PAR. Principal component analysis revealed that cotton yield was similarly related to LAI, PAR, and growth characteristics (<xref ref-type="fig" rid="f11">
<bold>Figure&#xa0;11</bold>
</xref>). 71.1% and 16.5% of the variability was explained by PC1 and PC2, respectively. LAI, Tr, DMA, and yield were positively correlated with PC1, while Tr was negatively correlated with PC1. These indicated that an appropriate increase in the number of cotton rows in jujube-cotton intercropping enhanced dry matter accumulation and yield by improving the LAI and increasing PAR.</p>
<fig id="f10" position="float">
<label>Figure&#xa0;10</label>
<caption>
<p>Relationships among cotton yield, growth characteristics, and photosynthetically active radiation. LAI, leaf area index; LAD, leaf area duration; CGR, crop growth rate; NAR, net assimilation rate; DMA, dry matter accumulation; Tr(B), Transmitted PAR rate at the boll stage; LN (B), Intercepted PAR rate at the boll stage; Tr (FB), Transmitted PAR rate at the flowering&#x2013;boll stage; LN(B), Intercepted PAR rate at the flowering&#x2013;boll stage. *<italic>p</italic>&#xa0;&lt;&#xa0;0.05; **<italic>p</italic>&#xa0;&lt;&#xa0;0.01.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1663361-g010.tif">
<alt-text content-type="machine-generated">Heatmap displaying correlation coefficients among various agricultural metrics such as Yield, LAI, LAD, CGR, NAR, DMA, and others. Positive correlations are highlighted in darker shades, while negative correlations are lighter. Strong correlations are marked with asterisks.</alt-text>
</graphic>
</fig>
<fig id="f11" position="float">
<label>Figure&#xa0;11</label>
<caption>
<p>Principal component analysis among cotton yield, growth characteristics, and photosynthetically active radiation. LAI, leaf area index; LAD, leaf area duration; CGR, crop growth rate; NAR, net assimilation rate; DMA, dry matter accumulation; Tr (B), Transmitted PAR rate at the budding stage; LN (B), Intercepted PAR rate at the budding stage; Tr (FB), Transmitted PAR rate at the flowering&#x2013;boll stage; LN (FB), Intercepted PAR rate at the flowering&#x2013;boll stage.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-16-1663361-g011.tif">
<alt-text content-type="machine-generated">Biplot showing PCA with PC1 (71.1%) and PC2 (16.5%). Different shapes indicate groups: IC2 (squares), IC4 (circles), IC6 (triangles), MC (inverted triangles). Colored ellipses represent clusters. Blue arrows show variable loadings, labeling traits like NAR, CGR, Yield, DMA, LAI, IN(FB), IN(B), with their directions and influence on the principal components.</alt-text>
</graphic>
</fig>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<sec id="s4_1">
<label>4.1</label>
<title>Effect of the row configuration on the LAI and LAD</title>
<p>LAI and LDA reflect the size of the crop&#x2019;s photosynthetic organs and are key indicators of canopy community structure (<xref ref-type="bibr" rid="B9">Fang et&#xa0;al., 2019</xref>), which directly affects the crop&#x2019;s photosynthetic production potential. The intensity of photosynthetic capacity is closely correlated with crop yield (<xref ref-type="bibr" rid="B18">Li et&#xa0;al., 2022a</xref>). Typically, the Leaf Area Index (LAI) presents a trend of initially increasing and then decreasing as the growth process advances (<xref ref-type="bibr" rid="B19">Li et&#xa0;al., 2022b</xref>). In the present study, LAI of cotton showed a tendency of increasing and then decreasing, reached the maximum value at the boll stage, consistent with the results of previous study (<xref ref-type="bibr" rid="B18">Li et&#xa0;al., 2022a</xref>). The LAI and LAD are susceptible to regulation through anthropogenic measures (e.g., planting density, tillage practices, fertilization, and irrigation), with planting density and row spacing configurations being the most significant factors affecting crop LAI (<xref ref-type="bibr" rid="B16">Kalogeropoulos et&#xa0;al., 2024</xref>). Optimized plant spacing configuration improves leaf spatial distribution, enhances photosynthetic efficiency, and boosts yield (<xref ref-type="bibr" rid="B51">Zuo et&#xa0;al., 2024</xref>). The present study found that cotton LAI and LAD under the intercropping system followed the pattern IC6 &gt; IC4 &gt; IC2, indicating that the LAI and LAD decreased with smaller populations and increased with larger populations. This study also found that the increase between IC2 and IC4 was greater than that between IC4 and IC6, this may be due to the fact that cotton plants and leaves rose with the increasing of planting density, but intraspecific competition occurred when the density became too high, which reduced the nutrients absorbed by individual plants, and reduced the cotton leaf area and thus weakened the increase in the LAI (<xref ref-type="bibr" rid="B29">Srinivasan et&#xa0;al., 2017</xref>).</p>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>Effect of row configuration on the PAR</title>
<p>The canopy structure significantly affects the photosynthetic productivity of cotton populations (<xref ref-type="bibr" rid="B10">Feng et&#xa0;al., 2016</xref>). LAI as an important indicator of crop canopy structure, affects light energy interception and DMA (<xref ref-type="bibr" rid="B28">Rogers et&#xa0;al., 2021</xref>). For cotton, light transmittance and interception rates directly influence the photosynthetic rate, thereby affecting the photosynthesis of lower and middle leaves and ultimately altering yield (<xref ref-type="bibr" rid="B4">Chapepa et&#xa0;al., 2020</xref>). In this study, the Tr of cotton showed the trend of IC6&lt; IC4&lt; IC2, and the IN showed the opposite trend. Tr and IN were significantly correlated with LAD and LAI, optimizing the cotton planting population improves the canopy structure, enhances the cotton population LAI, improves the PAR distribution within the canopy, and increases light energy use efficiency (<xref ref-type="bibr" rid="B39">Wu et&#xa0;al., 2023</xref>). In addition, Shading imposed by taller crops over shorter ones can become the dominant form of competition under conditions of sufficient water and high light intensity (<xref ref-type="bibr" rid="B30">Valladares et&#xa0;al., 2016</xref>). Taller-statured crops, benefiting from ample sunlight, exhibit robust photosynthesis and vigorous growth, typically developing extensive root systems, this enhances their capacity for water and nutrient uptake, thereby intensifying competitive pressure on shorter-statured crops (<xref ref-type="bibr" rid="B15">Iqbal et&#xa0;al., 2019</xref>). Conversely, shaded shorter crops experience reduced photosynthetic output, leading to diminished carbon allocation to their root systems. Increases in IN declined as number of cotton rows increased, suggesting that overly dense planting group shaded cotton leaves, thereby reducing the Tr (<xref ref-type="bibr" rid="B13">Hou et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B25">Niinemets, 2010</xref>; <xref ref-type="bibr" rid="B30">Valladares et&#xa0;al., 2016</xref>). Therefore, when cotton plant density is too low, the canopy intercepts less PAR, wasting light energy and reducing yield potential.</p>
</sec>
<sec id="s4_3">
<label>4.3</label>
<title>Effect of the row configuration on the DMA and yield</title>
<p>Crop population biomass is the direct product of photosynthesis, together with CGR reflect the functional capacity of photosynthetic organs and their production capacity, ultimately determining crop yield (<xref ref-type="bibr" rid="B31">Wang et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B44">Yin et&#xa0;al., 2017</xref>). The crop population size and row spacing configuration significantly affected CGR and NAR, thereby altering dry matter accumulation (<xref ref-type="bibr" rid="B17">Kuai et&#xa0;al., 2022</xref>). An appropriate planting density can optimize ventilation and light transmission within the population, improving its micro-meteorological environment (<xref ref-type="bibr" rid="B46">Yu et&#xa0;al., 2013</xref>), especially the enhancement of light energy utilization (<xref ref-type="bibr" rid="B27">Raza et&#xa0;al., 2019</xref>), thereby increase yield. Reasonable row spacing configuration regulates the cotton growing environment and shapes an efficient canopy, thereby promoting population dry matter accumulation and enhancing crop yield (<xref ref-type="bibr" rid="B8">Dong et&#xa0;al., 2025</xref>; <xref ref-type="bibr" rid="B39">Wu et&#xa0;al., 2023</xref>). In this study, DMA and CGR under IC6 were higher than those under IC4 and IC2and DMA were significantly correlated with LAI and PAR. This suggests that higher planting rows increased population dry matter accumulation by enhancing LAI and PAR interception, additionally, the increased planting density enhanced population dominance, which compensated for the reduced dry matter accumulation per plant (<xref ref-type="bibr" rid="B6">Dai et&#xa0;al., 2015</xref>). In addition, optimizing the row spacing configuration intercepts more light energy and stimulates stomatal conductance to open (<xref ref-type="bibr" rid="B23">Lu et&#xa0;al., 2023</xref>). Canopy light interception provides the energy foundation, while stomatal conductance acts as a key physiological regulatory valve controlling CO<sub>2</sub> supply (<xref ref-type="bibr" rid="B26">Pang et&#xa0;al., 2023</xref>). Together, they influence and ultimately determine the photosynthetic efficiency at both the leaf and canopy levels, thereby promoting the conversion of carbon assimilation products into dry matter and increasing yield (<xref ref-type="bibr" rid="B42">Yao et&#xa0;al., 2017</xref>). Despite this, the growth rate increase exhibited a declining trend from IC2 to IC6, suggesting that further increases in planting rows may not lead to additional yield gains (<xref ref-type="bibr" rid="B7">Deng et&#xa0;al., 2012</xref>).</p>
<p>There was a significant effect between the cotton population size and row spacing configuration on yield components. Furthermore, an appropriate planting density facilitates establishing a rational population structure, enhancing dry matter accumulation, balancing bolls number and weight, and ultimately improving cotton yield (<xref ref-type="bibr" rid="B5">Chen et&#xa0;al., 2025</xref>). A major factor influencing cotton yield and yield components is PAR (<xref ref-type="bibr" rid="B14">Hu et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B41">Yang et&#xa0;al., 2022</xref>). In the present study, cotton yield under IC6 was significantly higher than that under IC4 and IC2 and was significantly correlated with LAI, PAR, CGR, and DMA. This further suggests that increasing cotton planting rows in the jujube-cotton intercropping system improves yield may by increasing the cotton LAI, enhancing the PAR, and promoting the accumulation and translocation of assimilated substances. However, in the jujube-cotton intercropping system, competition for soil nutrients and water also exists between the two plants (<xref ref-type="bibr" rid="B33">Wang et&#xa0;al., 2016</xref>). An increase in the yield of one crop inevitably decreases the yield of another (<xref ref-type="bibr" rid="B50">Zhang et&#xa0;al., 2014</xref>). The same trend was found in the present study, as the cotton planting rows increased, cotton yield increased but jujube yield decreased in the intercropping system. This may be due to the increase in the number of cotton populations in the intercropping system, which results in competition between cotton and jujube for resources such as light, water, and nutrients (<xref ref-type="bibr" rid="B43">Yin et&#xa0;al., 2020</xref>), increased competition may lead to earlier occurrence of light and water stress in plants, thereby affecting stomatal conductance, transpiration rate, and growth rate (<xref ref-type="bibr" rid="B34">Wang W. et&#xa0;al., 2022</xref>), and ultimately reducing the yield of jujube. In addition, this study also found that LER was greater under IC4 and IC6 than under IC2, but there was no difference between IC2 and IC6. Furthermore, the total yield under IC4 was higher than under IC2 and IC6. Therefore, the co-development of cotton and jujube requires coordination to optimize the total yield of the intercropping system. We recommend IC4 as the optimal treatment for the jujube-cotton intercropping system.</p>
</sec>
</sec>
<sec id="s5" sec-type="conclusions">
<label>5</label>
<title>Conclusion</title>
<p>In this study, the LAI, PAR, CGR, dry matter accumulation, and yield were showed the pattern of IC6 &gt; IC4 &gt; IC2. Cotton yield was positively correlated with LAI, PAR, CGR, and dry matter accumulation. The LER under IC4 and IC6 were greater than that under IC2.The total yield under IC4 was higher than that under IC2 and IC6. Therefore, to synthesize the total yield of the intercropping system, four rows&#x2019; cotton planted between jujube trees is recommended for farmers to improve economic benefits. However, it is worth that water and fertilizer management and mechanized production in this system make it a challenge for production today. Further research should focus on integrated water and fertilizer management to reduce inputs while enhancing efficiency in the jujube-cotton intercropping system.</p>
</sec>
</body>
<back>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The data analyzed in this study is subject to the following licenses/restrictions: The entire set of raw data presented in this study is available from the corresponding author upon request. Requests to access these datasets should be directed to <email xlink:href="mailto:guodongchen@taru.edu.cn">guodongchen@taru.edu.cn</email>.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>JW: Conceptualization, Writing &#x2013; original draft. PW: Data curation, Investigation, Writing &#x2013; original draft. XL: Resources, Writing &#x2013; review &amp; editing. ZC: Data curation, Formal Analysis, Writing &#x2013; review &amp; editing. LL: Data curation, Investigation, Writing &#x2013; review &amp; editing. QH: Investigation, Validation, Writing &#x2013; review &amp; editing. HQ: Methodology, Writing &#x2013; review &amp; editing. WZ: Resources, Writing &#x2013; review &amp; editing. SW: Conceptualization, Funding acquisition, Methodology, Writing &#x2013; review &amp; editing. GC: Conceptualization, Funding acquisition, Project administration, Supervision, Visualization, Writing &#x2013; review &amp; editing.</p>
</sec>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research and/or publication of this article. This research was funded by the National Natural Science Foundation of China (31601272, 32060449), the National Key R&amp;D Program of China (2016YFC0501400), Guiding Science and Technology Program Project of Xinjiang Production and Construction Corps (2023ZD103), President&#x2019;s Fund at Tarim University (TDZKBS202421), Tarim University Presidential Fund Innovative Research Team Project (TDZKCX202309), and Projects of &#x2018;Tianchi Excellence&#x2019;.</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be constructed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="correction-statement">
<title>Correction note</title>
<p>A correction has been made to this article. Details can be found at: <ext-link xlink:href="https://doi.org/10.3389/fpls.2025.1717089" ext-link-type="uri">10.3389/fpls.2025.1717089</ext-link>.</p>
</sec>
<sec id="s11" sec-type="ai-statement">
<title>Generative AI statement</title>
<p>The author(s) declare that no Generative AI was used in the creation of this manuscript.</p>
<p>Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.</p>
</sec>
<sec id="s12" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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