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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2024.1480588</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Methods</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Screening method and metabolic analysis of plant anti-aging microorganisms via ammonia-induced senescence in the duckweed <italic>Wolffia microscopica</italic>
</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Tan</surname>
<given-names>Deguan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Fu</surname>
<given-names>Lili</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Yu</surname>
<given-names>Ying</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Sun</surname>
<given-names>Xuepiao</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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<contrib contrib-type="author" corresp="yes">
<name>
<surname>Zhang</surname>
<given-names>Jiaming</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
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<aff id="aff1">
<sup>1</sup>
<institution>National Key Laboratory for Tropical Crop Breeding, Institute of Tropical Bioscience and Biotechnology, Sanya Research Institute of Chinese Academy of Tropical Agricultural Sciences</institution>, <addr-line>Haikou</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Hainan Key Laboratory of Microbiological Resources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences</institution>, <addr-line>Haikou</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Xuming Li, Hugo Biotechnologies Co., Ltd., China</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Xiaolu Liu, University of Science and Technology Beijing, China</p>
<p>Zhongbao Zhang, Beijing Academy of Agricultural and Forestry Sciences, China</p>
<p>Chongrong Wang, Guangdong Academy of Agricultural Sciences (GDAAS), China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Jiaming Zhang, <email xlink:href="mailto:zhangjiaming@itbb.org.cn">zhangjiaming@itbb.org.cn</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>13</day>
<month>11</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1480588</elocation-id>
<history>
<date date-type="received">
<day>14</day>
<month>08</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>24</day>
<month>10</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Tan, Fu, Yu, Sun and Zhang</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Tan, Fu, Yu, Sun and Zhang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Ammonium is the preferred N nutrition over nitrate for some plant species, but it is toxic to many other plant species and induces senescence at high concentrations. The duckweed <italic>Wolffia microscopica</italic> (Griff.) Kurz is the smallest and fast-growing angiosperm. It is highly sensitive to ammonium and has a short lifespan on media containing 0.5 mM or higher ammonia. This feature makes it a potential model plant to screen for anti-aging microorganisms. By co-culturing <italic>W. microscopica</italic> with endophytic microorgainisms isolated from rubber tree, we screened out an <italic>Aspergillus sclerotiorum</italic> strain ITBB2-31 that significantly increased the lifespan and the biomass of <italic>W. microscopica</italic>. Interestingly, both filter-sterilized and autoclaved exudates of ITBB2-31 increased the lifespan of <italic>W. microscopica</italic> cultures from 1 month to at least 7 months. Meanwhile, the exudates also showed strong anti-aging effects on cassava and the rubber tree leaves and increased chlorophyll contents by 50% - 350%. However, high contents of filter-sterilized exudates inhibited the growth of <italic>W. microscopica</italic> while extending its lifespan, indicating that there were heat-sensitive growth-inhibiting agents in the exudates as well. Comparative metabolome analysis of the filter-sterilized and autoclaved exudates revealed multiple heat-stable anti-aging and heat-sensitive growth-inhibiting compounds. Our results suggest that <italic>W. microscopica</italic> can be served as a rapid and efficient model plant to screen for plant anti-aging microorganisms.</p>
</abstract>
<kwd-group>
<kwd>duckweeds</kwd>
<kwd>anti-aging microorganism</kwd>
<kwd>stay-green</kwd>
<kwd>screening model</kwd>
<kwd>endophytes</kwd>
<kwd>comparative metabolome</kwd>
</kwd-group>
<counts>
<fig-count count="7"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="94"/>
<page-count count="15"/>
<word-count count="6976"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Functional and Applied Plant Genomics</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Leaf aging is one of the important factors that influence crop yields. The stay-green characters of leaves extend the duration of active photosynthesis and are positively correlated with yields and stress tolerance in many crops, including maize, wheat, rice, soybean, sorghum, oats, and cassava (<xref ref-type="bibr" rid="B66">Rawson et&#xa0;al., 1983</xref>; <xref ref-type="bibr" rid="B70">Sasaki and Ishii, 1992</xref>; <xref ref-type="bibr" rid="B11">Bekavac et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B37">Joshi et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B43">Kusaba et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B81">Thomas and Ougham, 2014</xref>). The stay-green genotypes of maize, for example, do not lose the green color of their leaves until physiological maturity, while the non-stay-green genotypes start losing the green color of their leaves approximately 30 days after flowering (<xref ref-type="bibr" rid="B11">Bekavac et&#xa0;al., 2002</xref>). Stay-green alleles enhance grain yield in sorghum under drought by modifying canopy development and water uptake patterns (<xref ref-type="bibr" rid="B13">Borrell et&#xa0;al., 2014</xref>). Exogenous application of cytokinins on leaves of winter wheat improved stay-green characteristics and thus increased grain yield in heat stress (<xref ref-type="bibr" rid="B87">Yang et&#xa0;al., 2016</xref>). Therefore, stay-green traits have been used in breeding programs of many grain crops. Through intensive selection, varieties with both higher yields and longer duration of greenness in a range of grain crops have been commercialized (<xref ref-type="bibr" rid="B81">Thomas and Ougham, 2014</xref>). Stay-green is also important to root crops. For example, cassava plant ideally has a leaf life of 15&#x2013;20 weeks and an optimal leaf area index (LAI) of 4 to 6 according to a simulation model for substantially increased cassava yields with longer leaf life (<xref ref-type="bibr" rid="B21">Cock et&#xa0;al., 1979</xref>). In most cultivars, however, leaf life is much shorter, and replacement of leaves requires energy input and creates a competitive sink for photosynthetic assimilates, thus reducing root yields. Introduction of a senescence-inducible isopentyl transferase gene into cassava extended leaf greenness, and thus increased the yield (<xref ref-type="bibr" rid="B91">Zhang et&#xa0;al., 2010</xref>). The importance of stay-green in agriculture and the relevant molecular mechanisms that regulate stay-green traits have been well reviewed (<xref ref-type="bibr" rid="B43">Kusaba et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B81">Thomas and Ougham, 2014</xref>; <xref ref-type="bibr" rid="B1">Abdelrahman et&#xa0;al., 2017</xref>).</p>
<p>The stay-green characters are usually obtained by natural mutation and/or artificial engineering. An alternative way may be the application of beneficial microorganisms to plants. Beneficial microorganisms have been isolated from many plants as endophytes. The interactions between hosts and endophytes involve flows of various compounds, of which some are highly toxic to the hosts (<xref ref-type="bibr" rid="B63">Powell and Petroski, 1992</xref>), however, in many cases, the endophytes are beneficial to hosts by increasing abiotic and biotic stress resistances, and thus improve the adaptation of the plants (<xref ref-type="bibr" rid="B71">Schardl et&#xa0;al., 2004</xref>). Some grass species from coastal and geothermal habitats require symbiotic fungal endophytes for salt and heat tolerance (<xref ref-type="bibr" rid="B67">Rodriguez and Redman, 2008</xref>). The ability of symbiotic microorganisms to confer stress tolerance to plants may provide a novel strategy to cope with the problems in modern agriculture. In this paper, we report a rapid and efficient method for screening of anti-aging microorganisms, based on an early aging duckweed species <italic>Wolffia microscopica</italic> using <italic>in vitro</italic> culture system.</p>
<p>Duckweeds belong to a globally distributed family Lemnaceae. They are free floating monocots and are currently classified into 5 genera and 37 species (<xref ref-type="bibr" rid="B44">Landolt, 1986</xref>; <xref ref-type="bibr" rid="B5">Appenroth et&#xa0;al., 2013</xref>). Duckweed clones are collected from all over the world and are maintained at Duckweed Stock Collection Centers situated in Zurich, Switzerland; Jena, Germany; Rutgers, New Brunswick, USA; and Chengdu and Haikou, China. The most accepted maintenance media is the modified Hoagland medium (<xref ref-type="bibr" rid="B33">Hoagland and Arnon, 1950</xref>), N, E, and SH media supplemented with 1% sucrose and solidified with 0.6% agar (<xref ref-type="bibr" rid="B4">Appenroth, 2015</xref>; <xref ref-type="bibr" rid="B77">Sree and Appenroth, 2016</xref>). While most clones can be stored for three months before subculture, some clones should be subcultured more often, such as <italic>W. microscopica</italic>.</p>
<p>
<italic>W. microscopica</italic> is one of the fast growing duckweed species with a biomass doubling time of only one day (<xref ref-type="bibr" rid="B94">Ziegler et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B6">Appenroth et&#xa0;al., 2017</xref>). Its plant body is simplified into a tiny frond with a size of only around 1 mm (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). However, its axenic stock cultures senesce more rapidly, resulting in a shorter maintenance cycle compared to the other species in the duckweed family, thus requiring to be subcultured more often. This species was once lost completely from all duckweed collections in the year 2009; however, it was rediscovered in 2013 (<xref ref-type="bibr" rid="B76">Sree and Appenroth, 2014</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Dorsal <bold>(A)</bold> and side <bold>(B)</bold> views of typical two-fronds plant of <italic>W. microscopica</italic> 2001. White arrows indicate the pistils and red arrows indicate the stamens.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1480588-g001.tif"/>
</fig>
<p>The rubber tree (<italic>Hevea brasiliensis</italic>) is widely cultivated in tropical areas (<xref ref-type="bibr" rid="B32">Heng and Joo, 2017</xref>) where there exist rich environmental microorganisms, and its trunk bark is regularly cut for harvesting latex, thus making it more susceptible to external microbial invasion. In addition, the rubber tree mainly reproduces through bud grafting (<xref ref-type="bibr" rid="B32">Heng and Joo, 2017</xref>), which keeps the spread of endophytes among its offsprings. These make the rubber tree abundant in endophytic microorganisms. Many endophytic fungal strains from the rubber tree have been discovered, among which <italic>Ascomycota</italic> species accounts for 97%, and the sapwood has a greater diversity of endophytes than the leaves (<xref ref-type="bibr" rid="B25">Gazis and Chaverri, 2010</xref>). Our research team has also isolated many endophytic fungi from the rubber tree, and found that some strains can remarkably inhibit the growth of the pathogenic fungus <italic>Colletotrichum gloeosporioides</italic> Penz. Sace and <italic>Fusarium oxysporum</italic> Cubense (<xref ref-type="bibr" rid="B92">Zheng et&#xa0;al., 2009a</xref>), and another strain called ITBB2-1 exhibited high salt tolerance (<xref ref-type="bibr" rid="B93">Zheng et&#xa0;al., 2009c</xref>). These findings indicate that endophytic fungi of the rubber tree have some unique biological functions.</p>
<p>In this study, we found that <italic>W. microscopica</italic> is sensitive to ammonia-induced senescence. The early-aging phenomena can be served as a reporter to screen for anti-aging microorganisms by co-culturing it with candidate microorganisms or by supplementation of the fermented medium of microorganisms into the culture medium of the plant.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Plant materials and culture media</title>
<p>The axenic <italic>Wolffia microscopica</italic> (Griff.) Kurz clones 2001 and 2008 were provided by Prof. Klaus-J. Appenroth at University of Jena, Germany and Dr. K. Sowjanya Sree at Central University of Kerala, India. The clones are maintained at the Institute of Tropical Bioscience and Biotechnology (ITBB), Chinese Academy of Tropical Agricultural Sciences (CATAS). The basic subculture medium was a modified Hoagland medium (MH) originally designated by <xref ref-type="bibr" rid="B33">Hoagland and Arnon (1950)</xref> supplemented with 29 mM sucrose and 6 g L<sup>-1</sup> agar (Biotechnology grade, Beijing Solarbiao Science &amp; Technology co., Ltd, Beijing, China) for solidification. The components of the MH medium was previously described (<xref ref-type="bibr" rid="B23">Fu et&#xa0;al., 2017</xref>). Other media that were tested in this research include N (<xref ref-type="bibr" rid="B7">Appenroth et&#xa0;al., 1996</xref>), E (<xref ref-type="bibr" rid="B20">Cleland and Briggs, 1967</xref>), and SH (<xref ref-type="bibr" rid="B72">Schenk and Hildebrandt, 1972</xref>) media (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S1</bold>
</xref>). The media were autoclaved at 121&#xb0;C for 20 min.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Stay-green verification of the stock cultures of <italic>W. microscopia</italic>
</title>
<p>Ten plants of <italic>W. microscopia</italic> clones 2001 and 2008, respectively, were inoculated in the centre of each 6-cm plate containing MH medium solidified with 6 g L<sup>-1</sup> agar at 5 d intervals, 6 plates were inoculated each time for each clone. The plates were incubated in a growth chamber (BIC-250, Boxun Instrument, Shanghai, China) with 16 h photoperiod at 100 &#x3bc;mol&#xb7;m<sup>-2</sup>&#xb7;s<sup>-1</sup> photosynthetic active radiation (PAR) and 25 &#xb1; 1&#xb0;C. The status of the plants was examined every other day until two months, and then fronds were harvested and weighed. Three parallel experiments were performed.</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Screening of anti-aging fungal strains by coculturing <italic>W. microscopica</italic> with candidate fungi</title>
<p>The endophytic fungal strains were previously isolated from the rubber tree (<xref ref-type="bibr" rid="B92">Zheng et&#xa0;al., 2009a</xref>). The fungi were maintained on Potato Dextrose and Agar (PDA) medium at room temperature. Ten fronds of <italic>W. microscopia</italic> clone 2001 were inoculated in the centre of each 6-cm plate containing MH medium. Fungal spores and/or mycelia were co-cultured on the edge of the same plate. The plates that were only inoculated with <italic>W. microscopia</italic> were used as control. All plates were incubated in the growth chamber (BIC-250, Boxun, Shanghai) with 16 h photoperiod at 100 &#x3bc;mol&#xb7;m<sup>-2</sup>&#xb7;s<sup>-1</sup> photosynthetic active radiation (PAR) and 25 &#xb1; 1&#xb0;C for 30 d. The status of the plants was examined every other day.</p>
</sec>
<sec id="s2_4">
<label>2.4</label>
<title>Temperature-dependence of growth-promoting effect of fungal strain ITBB2-31</title>
<p>The growth-promoting experiments of <italic>Aspergillus sclerotiorum</italic> strain ITBB2-31 was carried out as described above. The plates were incubated in growth chambers (BIC-250, Boxun, Shanghai) with 16&#xa0;h photoperiod at 100 &#x3bc;mol&#xb7;m<sup>-2</sup>&#xb7;s<sup>-1</sup> photosynthetic active radiation (PAR) for 30 d at 20&#xb0;C, 25&#xb0;C, and 30&#xb0;C, respectively. The fronds in each plate was wrapped in tinfoil and dried at 105&#xb0;C overnight and weighed. The significance of weight differences was analyzed using IBM SPSS Statistics Version 24 (IBM Corporation, New York, USA).</p>
</sec>
<sec id="s2_5">
<label>2.5</label>
<title>Anti-aging effects of ITBB2-31 fermented broth on <italic>W. microscopica</italic>
</title>
<p>The fungal strain ITBB2-31 was inoculated in MH liquid medium supplemented with 29 mM sucrose and incubated at 28&#xb0;C in the dark for 10 d. The fermented broth was filtered with 50 &#xb5;m nylon membrane to remove the mycelium. The filtrate was then passed through filter paper, and filter-sterilized with 0.22 &#xb5;m filter units (Millipore, Bedford, USA), and then added into the sterilized MH medium with concentrations of 10%, 20%, 30%, and 50% (v/v), respectively. To test whether the functional element in the exudate was temperature resistant, the filtrate was added into MH medium with above concentrations and autoclaved at 121&#xb0;C for 20 min. The autoclaved media were poured into 6-cm plates. <italic>W. microscopia</italic> clones 2001 and 2008 were inoculated in the centre of the plates and incubated in the growth-chamber with 16 h photoperiod at 100 &#x3bc;mol&#xb7;m<sup>-2</sup>&#xb7;s<sup>-1</sup> photosynthetic active radiation (PAR) and 25&#xb0;C for one month. The plants in each plate were separately wrapped in tinfoil and dried at 105&#xb0;C overnight and weighed. The significance of weight differences between treatments was analyzed using IBM SPSS Statistics Version 24.</p>
</sec>
<sec id="s2_6">
<label>2.6</label>
<title>Anti-aging effect of ITBB2-31 on the rubber tree and cassava leaves</title>
<p>The anti-aging effect of ITBB2-31 was tested using the leaves of test-tube plants of rubber tree and cassava following the method described by Zhang et&#xa0;al (<xref ref-type="bibr" rid="B91">Zhang et&#xa0;al., 2010</xref>). Fully expanded, green, and healthy leaves collected from rubber tree plants grown in the greenhouse were also used. The leaves were put in 15-cm petri-dishes on filter paper wetted with MH medium supplemented by 0%, 10%, 20%, and 30% fermented MH broth of ITBB2-31. Dark-induced senescence was performed by incubating the leaves in the dark at 25&#xb0;C for two weeks. The leaf aging status was recorded by photography every day. To quantify the anti-senescence effect, leaf samples were homogenized in liquid nitrogen and dissolved in 100% (v/v) acetone as described in a method (<xref ref-type="bibr" rid="B48">Lichtenthaler, 2010</xref>). The samples were incubated at room temperature for 30 min and centrifuged to remove cell debris. Chlorophyll <italic>a</italic> and <italic>b</italic> content of the supernatants was determined by spectrophotometer and calculated according to the equation as previously described (<xref ref-type="bibr" rid="B47">Lichtenthaler, 1987</xref>). The significance of the differences between treatments was tested by one-way ANOVA and LSD test using IBM SPSS Statistics Version 24.0 (IBM Corporation, New York, USA).</p>
</sec>
<sec id="s2_7">
<label>2.7</label>
<title>DNA extraction and polymerase chain reaction and phylogenetic analysis</title>
<p>Genomic DNA of fungal strain ITBB2-31 was isolated using a fungal DNA isolation kit (Tiangen Biotech, Beijing, China). The internal transcribed spacer (ITS) sequence was amplified as previously described (<xref ref-type="bibr" rid="B93">Zheng et&#xa0;al., 2009c</xref>) with two primers HNP76 (5&#x2032;-TCCGTAGGTGAACCTGCGG-3&#x2032;) and HNP77 (5&#x2032;-TCCTCCGCTTATTGATATGC-3&#x2032;). The amplified fragment was sequenced on both strands at BGI (Beijing Genomic Institute), Shenzhen, China. For phylogenetic analysis, reference sequences were downloaded from GenBank. The sequences were aligned with MacVector 15.0.2, the unaligned 5&#x2032; and 3&#x2032; sequences were removed. Phylogenetic tree was generated using Mega7 (<xref ref-type="bibr" rid="B41">Kumar et&#xa0;al., 2016</xref>). The evolutionary history was inferred by using the Maximum Likelihood method based on the Tamura-Nei model (<xref ref-type="bibr" rid="B79">Tamura and Nei, 1993</xref>). The tree with the highest log likelihood is shown. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. All positions containing gaps and missing data were eliminated, and there was a total of 453 positions in the final dataset.</p>
</sec>
<sec id="s2_8">
<label>2.8</label>
<title>LC-ESI-MS/MS analysis of the fermented media</title>
<p>Both filter-sterilized and autoclaved fermented media of ITBB2-31 were respectively analyzed using liquid chromatography electrospray ionization tandem mass spectrometry (LC-ESI-MS/MS). For liquid chromatograph (LC), an Agilent 1290 (Agilent Technologies, CA) with a Waters column ACQUITY UPLCBEH Amide (1.8 &#x3bc;m, 2.1 mm &#xd7; 100 mm) was used. The column temperature was set to 35&#xb0;C, and 2 &#x3bc;L of sample was injected. The elution buffers for positive ion model were 0.1% formic acid in water (buffer A) and 0.1% formic acid in acetonitrile (buffer B); 95% of buffer A was supplied for the first minute of run, then the profile of buffer B was increased gradually until reaching 95% of the elution buffer at 16 minutes, and reduced to 5% at 18 minutes. For negative ion model, 2 mM ammonia acetate (buffer A) and acetonitrile (buffer B) were used, following the same elution schedule as above. The flow rate was 0.4 mL/min. For mass spectrometry, an Agilent 6545QTOF with control software LC/MS Data Acquisition, Version B.08.00 was used. The ion source temperature was 320&#xb0;C. The nitrogen gas flow and sheath gas flow were 8 L/min and 12 L/min, respectively. Sheath gas temperature was 350&#xb0;C. The auxiliary pressure was set to 3500 V and 4000 V for negative and positive models, respectively. Mass spectra of the parent ions and the subsequent fragmented ions were scanned over the range of 50&#x2013;1100 m/z. The data was analyzed using software MSDIAL (version 2.54) and the identities of the metabolites were determined by searching against the in-built MS/MS reference libraries including metlin, MassBank, MoNA, and HMDB. Relative abundance of a compound was calculated using the equation: the area of the compound/the total area of all compounds &#xd7; the number of compounds.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<sec id="s3_1">
<label>3.1</label>
<title>Ammonium-induced senescence observed by <italic>in vitro</italic> culture of <italic>W. microscopica</italic>
</title>
<p>The MH medium is one of the commonly used media to retain the axenic stock cultures of duckweed species. However, one species, <italic>W. microscopica</italic> did not perform well on MH medium. This species grew at the beginning, and reached a colony size of approximately 0.8-1.3 cm in diameter in two weeks, and then approached senescence (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>). Most colonies died within one month with a few exceptions in some colonies, and all plants died without exceptions in two months (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>). Therefore, the lifespan of <italic>in vitro</italic> cultures of <italic>W. microscopica</italic> on MH medium was only one month. In contrast, the other species in the duckweed family can be subcultured at three-month intervals on MH medium. This is probably the reason why <italic>W. microscopica</italic> was easy lost from the duckweed stock collections (<xref ref-type="bibr" rid="B76">Sree and Appenroth, 2014</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Ammonia-induced senescence of <italic>W. microscopica</italic> 2001. <bold>(A)</bold> Growth status on MH medium at different time points as indicated on the plates; <bold>(B)</bold> Growth status on different culture media as indicated on the plates; <bold>(C)</bold> Growth status on E and N media supplemented with different types and concentrations of ammonia salts; <bold>(D)</bold> Fresh weight analysis of plant colonies in <bold>(C)</bold>; <bold>(E)</bold> Chlorophyll content analysis of plant colonies in <bold>(C)</bold>. The culture temperature was 25&#xb0;C and the culture time was four weeks if not indicated. The significance of data was analyzed with one-way ANOVA and LSD test. Different letters on columns indicate significance at 1% level.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1480588-g002.tif"/>
</fig>
<p>To investigate the reason of early senescence in <italic>W. microscopica</italic> stock cultures, four commonly used media including MH, SH, E, and N media were used to culture <italic>W. microscopica</italic> clone 2001. The plants grew the fastest on E medium, followed by N medium, and slowest on SH and MH media. In the meantime, the plants on MH and SH media began senescence rapidly and mostly turned pale white within three weeks and could not resume growth on fresh medium, while the plants on E and N media were still prosperous (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>). By comparing the components in the four media, we found that both MH and SH media contained ammonia nitrogen (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S1</bold>
</xref>), which were 1 mM NH<sub>4</sub>NO<sub>3</sub> and 1.3 mM (NH<sub>4</sub>)H<sub>2</sub>PO<sub>4</sub> in MH and SH media, respectively, while E and N media contained only nitrate.</p>
<p>Ammonia-induced senescence has been reported in both mammals and plants (<xref ref-type="bibr" rid="B50">Lin et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B27">Gorg et&#xa0;al., 2015</xref>). To investigate whether the early senescence of <italic>W. microscopica</italic> on MH and SH media was caused by ammonia-induced senescence, <italic>W. microscopica</italic> clones 2001 and 2008 were cultured on E and N media supplemented with different concentrations of ammonium ion. Results indicated that supplementation of 0.5 mM NH<sub>4</sub>
<sup>+</sup> in both E and N media was enough to drive <italic>W. microscopica</italic> to die within four weeks (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>), the higher the NH<sub>4</sub>
<sup>+</sup> concentration, the quicker for <italic>W. microscopica</italic> to die. The fresh weights were reduced by 73% - 85% in E medium and 83% - 88% in N medium depending on the concentration of ammonium salts (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2D</bold>
</xref>). The chlorophyll contents were reduced by 81% - 92% in the E and N media after addition of ammonium salts (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2E</bold>
</xref>). These results indicated that the early senescence of <italic>W. microscopica</italic> was induced by ammonia ion.</p>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Screening of anti-aging microorganisms</title>
<p>Twenty-five endophytic microbial strains isolated from rubber tree (<xref ref-type="bibr" rid="B92">Zheng et&#xa0;al., 2009a</xref>) were tested for their anti-aging effect on <italic>W. microscopica</italic>. One strain designated as ITBB2-31 showed strong anti-aging activity. When <italic>W. microscopia</italic> clones was co-cultured with ITBB2-31, its growth was significantly promoted, and the co-cultured plant colonies grew to a larger diameter and kept growing after one month of inoculation at all tested temperatures (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). In contrast, the control colonies that were not co-cultured had stopped growth in approximately two weeks and died in one month (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). The dry weight of co-cultured colonies was 3.5-4.5 times the weights of the controls depending on the culture temperatures, and the highest dry weight (45.6 mg) was obtained at 25&#xb0;C (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Anti-aging effects of endophytic fungal strain ITBB2-31 by co-culture with <italic>W. micoscopica</italic> 2001. <bold>(A)</bold> Representative plates of co-culture and control after incubation for one month under different temperatures; <bold>(B)</bold> Statistic analysis of the dry weights of <italic>W. micorscopica</italic> colonies. The significance of differences was tested by one-way ANOVA and LSD test. Different letters above columns indicate significant differences at 5% level.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1480588-g003.tif"/>
</fig>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Molecular identification of ITBB2-31</title>
<p>The internal transcribed spacer sequence (ITS) of strain ITBB2-31 was amplified by PCR method. The amplified product was 609 bp. BLAST searches against the NCBI database resulted in best hit to <italic>Aspergillus sclerotiorum</italic> Huber strain ATCC16892, which is the type strain of <italic>A. sclerotiorum</italic> and was isolated from fruit of apple (<italic>Malus sylvestris</italic>) by G.A. Huber in Oregon, USA (<xref ref-type="bibr" rid="B34">Huber, 1933</xref>). Phylogenetic analysis indicated that ITBB2-31 belonged to the yellow aspergilli, the <italic>Aspergillus</italic> section <italic>Circumdati</italic> (<xref ref-type="bibr" rid="B82">Visagie et&#xa0;al., 2014</xref>), and formed a clade with <italic>A. sclerotiorum</italic> strains and <italic>A. subramanianii</italic>, <italic>A. bridgeri</italic>, <italic>A. persii</italic>, <italic>A. salwaensis</italic> and <italic>A. roseoglobulosus</italic> strains with 98% bootstrap support (<xref ref-type="supplementary-material" rid="SF1">
<bold>Supplementary Figure S1</bold>
</xref>). Pairwise alignments indicated that the ITS sequence of strain ITBB2-31 had 100% identities with strains ATCC16892, NW3, NRRL35202, NRRL415, NRRL35024, DTO129-F5, and CCF3434; and 99.6% - 99.8% identities compared to <italic>A. scelrotiorum</italic> strain ANDEF08, <italic>A. subramanianii</italic> strains DTO129G4, NRRL6161 and DTO245E4, <italic>A. bridgeri</italic> strain NRRL1300, and <italic>A. persii</italic> strain CBS112795. The next closely related strains in the same clade were <italic>A. salwaensis</italic> DTO297B3T with 99.2% identities and <italic>A. roseoglobulosus</italic> strain CBS112800 with 97.1% identities. The sequence identities compared to the strains in other clades were less than 92.3%. Taken together, ITBB2-31 is an <italic>A.&#xa0;scelrotiorum</italic> strain.</p>
</sec>
<sec id="s3_4">
<label>3.4</label>
<title>The fermented broth of ITBB2-31 presents anti-aging activity for <italic>W. microscopia</italic>
</title>
<p>It is obvious that the anti-aging and growth-promoting activity of ITBB2-31 did not require physical contact between the plants and fungal colonies (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>), because the fungus and plants were inoculated far away, and in most cases the fungus and plants remained separated in one month. Therefore, there must be some components secreted into the medium or some volatiles released to the air by the fungus. We tested the medium in this research, either autoclaved or filter-sterilized fermented MH medium (FM hereafter) was added to the fresh MH medium in different proportions before inoculation of the plants. Results indicated that both autoclaved and filter-sterilized FM prevented senescence and promoted the growth of <italic>W. microscopia</italic>. The plants of both clones 2001 and 2008 kept alive and continued to grow at all tested FM concentrations (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>). In contrast, the plants of both clones that grew on the control medium died in one month (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>). Therefore, the anti-aging factor was thermo-stable and was secreted into the culture medium.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Anti-aging effects of the exudates of fungal strain ITBB2-31 on <italic>W. microscopica</italic> clones 2001 and 2008. Both autoclaved and filter-sterilized fermented MH broth (FM) were supplemented to the MH medium with different proportions as indicated in the figure. <bold>(A)</bold> growth status of the two strains after one month of culture at 25&#xb0;C; <bold>(B, C)</bold> statistical analysis of dry weights of clones 2001 <bold>(B)</bold> and 2008 <bold>(C)</bold>. The significance of differences among the proportions of filter-sterilized (lower case letters) and the autoclaved (Upper case letters) FM was tested by one-way ANOVA and LSD methods. Different letters above columns indicate significant differences at 5% level of significance. The differences between the filter-sterilized and the autoclaved FM at the same proportion was tested with Independent-Samples T-test, and (*) above the columns indicates significance at 5% level.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1480588-g004.tif"/>
</fig>
<p>Besides the anti-aging and growth-promoting effect, supplementation with 30% or higher concentrations of the filter-sterilized FM resulted in lower growth-rate of <italic>W. microscopia</italic> as compared to 10% filter-sterilized FM, although the plants stayed green (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>). This inhibition effect was significant when the proportion of the filter-sterilized FM was increased to 50% (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4B, C</bold>
</xref>). However, the autoclaved FM present very weak inhibition effect and the decrease of dry weight at high concentrations was not statistically significant (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4B, C</bold>
</xref>), and the dry weights of plant colonies grown on 50% of autoclaved FM were significantly higher than those grown on 50% filter-sterilized FM for both clones 2001 and 2008 (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4B, C</bold>
</xref>). These results indicated that the components that inhibited plant growth were sensitive to high temperatures (e.g. 121&#xb0;C).</p>
<p>Moreover, the exudates of ITBB2-31 presented anti-aging activity to <italic>W. microscopica</italic> for many months. <italic>W. microscopica</italic> clones 2001 and 2008 were successfully retained on MH medium supplemented with 10% autoclaved FM for more than 7 months at 25&#xb0;C without subculture (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Long lasting anti-aging effects of the exudates of fungal strain ITBB2-31 on <italic>W. microscopica</italic> clones 2001 and 2008. Representative plates of <italic>M. microscopica</italic> clones 2001 and 2008 incubated on MH medium supplemented with 10% FM at 25&#xb0;C for seven months. The medium without addition of FM was used as control.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1480588-g005.tif"/>
</fig>
</sec>
<sec id="s3_5">
<label>3.5</label>
<title>Anti-aging activity of ITBB2-31 against dark-induced senescence of the rubber tree and cassava leaves</title>
<p>The FM of fungal strain ITBB2-31 presented strong anti-aging effects to detached leaves of <italic>in vitro</italic> plantlets of the rubber tree (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6A</bold>
</xref>) and cassava (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>), and the rubber tree leaves collected from the field (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6C</bold>
</xref>). Obvious senescence was shown on the control leaves of <italic>in vitro</italic> rubber tree and cassava after 15 days of dark treatment, and the chlorophyll contents of the leaves were only 0.79 mg/g and 0.70 mg/g FW for the rubber tree and cassava, respectively. Adding 10% FM significantly reduced senescence and increased chlorophyll contents by 53.6% and 106% for <italic>in vitro</italic> rubber tree and cassava leaves, respectively. The higher the concentration of FM, the higher the anti-aging effect (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6D</bold>
</xref>).</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Anti-aging effect of ITBB2-31 on detached leaves of rubber tree and cassava. Leaves were detached from <italic>in vitro</italic> plantlets of rubber tree variety Reyan7-33-97 <bold>(A)</bold> and cassava variety SC5 <bold>(B)</bold> and from field plants of rubber tree Reyan7-33-97 <bold>(C)</bold>; The leaves were incubated on different concentrations of autoclaved FM at 25&#xb0;C for 15 days in the dark; <bold>(D)</bold> Statistical analysis of chlorophyll contents in the leaves. Different letters above columns indicate significant difference at 5% significance level.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1480588-g006.tif"/>
</fig>
<p>The anti-aging effect of ITBB2-31 on the rubber tree leaves collected from the field was also significant. The control leaves turned brown with chlorophyll content of 1.40 mg/g FW after 15 days of dark treatment. The leaves treated with 10% FM of ITBB2-31 had 50% green area, and the total chlorophyll content was 1.94 mg/g FW, significantly higher than that of control leaves (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6D</bold>
</xref>). When the FM concentration was increased to 20%, the anti-aging effect increased significantly, and the chlorophyll content increased to 2.51 mg/g FW. Further increasing of FM concentration did not significantly increase the chlorophyll content further. Taken together, the anti-aging strain ITBB2-31 screened by <italic>W. microscopica</italic>-ammonia system is effective to other plants.</p>
</sec>
<sec id="s3_6">
<label>3.6</label>
<title>Comparative metabolome analysis reveals both anti-aging and growth-inhibiting agents in the fermented medium of ITBB2-31</title>
<p>LC-ESI-MS/MS identified 470 compounds in the filter-sterilized FM (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S2</bold>
</xref>), among which 368 compounds disappeared after autoclaving (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7A</bold>
</xref>), while 1141 new compounds that were supposed to be driven from heat-degradation were identified in the autoclaved FM (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7A</bold>
</xref>; <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S3</bold>
</xref>). The anti-aging agents are heat-stable (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>) and are supposed to present in both filter-sterilized and autoclaved FMs with similar abundances. In total, 102 compounds are shared by both treatments (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7A</bold>
</xref>; <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S4</bold>
</xref>). They are classified into ten subgroups, including lipids and lipid-like molecules (<xref ref-type="bibr" rid="B23">Fu et&#xa0;al., 2017</xref>), organic acids and derivatives (<xref ref-type="bibr" rid="B4">Appenroth, 2015</xref>), Organoheterocyclic compounds (<xref ref-type="bibr" rid="B77">Sree and Appenroth, 2016</xref>), Benzenoids (<xref ref-type="bibr" rid="B91">Zhang et&#xa0;al., 2010</xref>), and others (<xref ref-type="bibr" rid="B93">Zheng et&#xa0;al., 2009c</xref>) (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7B</bold>
</xref>). Seventeen compounds have similar relative abundances in both treatments (0.75 &lt; Rf/Ra &lt; 1.5, Rf (Relative abundance of Filter-sterilized FM), Ra (Relative abundance of Autoclaved FM), <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S4</bold>
</xref>) and are potentially the anti-aging candidates, out of which, some have been reported to have anti-aging effects in animals and/or plants, including 3-(2,4-dihydroxypentyl)-8-hydroxy-6-methoxyisochromen-1-one (an isocoumarin derivative) (<xref ref-type="bibr" rid="B64">Powers et&#xa0;al., 1989</xref>), indole-3-acetaldehyde (<xref ref-type="bibr" rid="B54">McClerklin et&#xa0;al., 2018</xref>), leupeptin (<xref ref-type="bibr" rid="B15">Carlin et&#xa0;al., 1994</xref>), muramic acid (<xref ref-type="bibr" rid="B46">Lehtonen et&#xa0;al., 1997</xref>), alpha-lapachone (<xref ref-type="bibr" rid="B18">Cho et&#xa0;al., 2006</xref>), and fatty acyls (<xref ref-type="bibr" rid="B89">Yu et&#xa0;al., 2020</xref>). Therefore, the anti-aging effects may come from a combination of compounds.</p>
<fig id="f7" position="float">
<label>Figure&#xa0;7</label>
<caption>
<p>Classification of metabolites in the filter-sterilized and autoclaved FM. <bold>(A)</bold> numbers of shared and distinct compounds in the filter-sterilized and autoclaved FM; <bold>(B)</bold> classification of compounds shared by two media.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1480588-g007.tif"/>
</fig>
<p>Compounds that inhibited the growth of <italic>W. microscopica</italic> are sensitive to heat-treatment and presented weak inhibition effect in the autoclaved FM (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>), therefore, the growth-inhibiting agents are supposed to have significantly reduced abundance in the autoclaved FM. We set a cutoff value of 90% reduction of relative abundance in the autoclaved FM, which is equivalent to Rf/Ra &gt; 9. Among the compounds that are shared in both treatments, 13 compounds mainly organic acids, alkaloid derivatives, and nucleoside analogues, have a reduction of &gt; 90% in the autoclaved FM (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S4</bold>
</xref>), some of which have been reported to have toxic and/or growth-inhibiting effects, including S-adenosyl-L-homocysteine (<xref ref-type="bibr" rid="B58">Penyalver et&#xa0;al., 2009</xref>), 4-hydroxyquinoline (<xref ref-type="bibr" rid="B19">Chung et&#xa0;al., 1989</xref>; <xref ref-type="bibr" rid="B36">Inderjit, Bajpai and Rajeswari, 2010</xref>), ginkgolide A (<xref ref-type="bibr" rid="B84">Weakley et&#xa0;al., 2011</xref>), phenylalanine (<xref ref-type="bibr" rid="B55">Nguyen et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B14">Cao et&#xa0;al., 2019</xref>), sparteine-15-carboxylic acid (<xref ref-type="bibr" rid="B8">Ashcroft et&#xa0;al., 1991</xref>), 3-hydroxypropanoic acid (<xref ref-type="bibr" rid="B90">Yung et&#xa0;al., 2016</xref>), and 2-hydroxyglutaric acid (<xref ref-type="bibr" rid="B12">Bjugstad et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B38">Keyser et&#xa0;al., 2008</xref>). Therefore, the growth-inhibiting effect of strain ITBB2-31 may come from a combination of compounds, similar to the anti-aging effect.</p>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<sec id="s4_1">
<label>4.1</label>
<title>
<italic>W. microscopica</italic> is the duckweed species most sensitive to ammonium-induced senescence</title>
<p>
<italic>W. microscopia</italic> is distributed in the Indian subcontinent. It was first named <italic>Grantia microscopica</italic> (Griff. Ex Voigt) (<xref ref-type="bibr" rid="B83">Voigt, 1845</xref>; <xref ref-type="bibr" rid="B28">Griffith, 1851</xref>), and was later identified as a member of the genus Wolffia Horkel (<xref ref-type="bibr" rid="B42">Kurz, 1866</xref>). Many investigations have been carried out on this plant since its identification (<xref ref-type="bibr" rid="B31">Hegelmaier, 1885</xref>; <xref ref-type="bibr" rid="B52">Maheshwari SC and Chauhan OS, 1963</xref>; <xref ref-type="bibr" rid="B53">Maheshwari SC and Venkataraman, 1966</xref>; <xref ref-type="bibr" rid="B68">Roy and Dutt, 1967</xref>; <xref ref-type="bibr" rid="B10">Bakshi et&#xa0;al., 1979</xref>; <xref ref-type="bibr" rid="B40">Khurana et&#xa0;al., 1986</xref>; <xref ref-type="bibr" rid="B44">Landolt, 1986</xref>). However, this species could have been causing trouble since its discovery (<xref ref-type="bibr" rid="B31">Hegelmaier, 1885</xref>), and could not be found for decades at places where it was discovered (<xref ref-type="bibr" rid="B78">Sree et&#xa0;al., 2015</xref>). The axenic clones of <italic>W. microscopica</italic> were once lost completely from all duckweed collections in the year 2009 (<xref ref-type="bibr" rid="B76">Sree and Appenroth, 2014</xref>), however, rediscovered from the lakes at Patan, Ambapur, Sughad and Vadasma in Gujarat, India and from that at Jessore, Bangladesh in 2013 (<xref ref-type="bibr" rid="B76">Sree and Appenroth, 2014</xref>). We obtained two of the newly collected clones 2001 and 2008 from K-J Appenroth in 2014, and immediately realized that they were more difficult to maintain than the other duckweed species.</p>
<p>In this research, we tested four commonly used duckweed culture media and found that MH and SH were not good media to keep <italic>W. microscopia</italic> alive for as long time as the other duckweed species. <italic>W. microscopica</italic> clones 2001 and 2008 performed similarly on these media and grew rapidly in the beginning, and then stopped growth and died within one month (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). In contrast, the other species can be subcultured at three-month intervals without problem. By comparing the components in the four media, we found that both MH and SH media contained ammonium ion, while E and N media that did not facilitate early senescence did not contain ammonium ion. Therefore, ammonia was supposed to be the inducer for the early-senescence in <italic>W. microscopica</italic>. This hypothesis was further confirmed to be right by supplementing ammonia in the E and N media that do not contain ammonium ion (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>). A concentration of 0.5 mM of ammonia was enough to induce early senescence in both strains of <italic>W. microscopica</italic> (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2D, E</bold>
</xref>).</p>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>The high sensitivity of <italic>W. microscopica</italic> to ammonia-induced senescence makes it a useful tool to screen for plant anti-aging microorganisms</title>
<p>There have been many reports on plant growth-promoting effects of endophytic microorganisms, which has been well reviewed (<xref ref-type="bibr" rid="B3">Aly et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B51">Ma et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B69">Santoyo et&#xa0;al., 2016</xref>). These endophytes are highly diverged and include both fungi (<xref ref-type="bibr" rid="B30">Harzallah et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B45">Larriba et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B39">Khan et&#xa0;al., 2017</xref>) and bacteria (<xref ref-type="bibr" rid="B73">Shi et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B57">Paz et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B65">Quecine et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B88">You et&#xa0;al., 2012</xref>). Some endophytic strains previously isolated from the rubber tree have been shown to have antifungal activities (<xref ref-type="bibr" rid="B92">Zheng et&#xa0;al., 2009a</xref>), and have a potential in biological control of plant pathogenic diseases (<xref ref-type="bibr" rid="B80">Tan et&#xa0;al., 2015</xref>).</p>
<p>In this research, we used <italic>W. microscopica</italic> to screen the endophytic fungal strains isolated from rubber tree (<xref ref-type="bibr" rid="B92">Zheng et&#xa0;al., 2009b</xref>; <xref ref-type="bibr" rid="B80">Tan et&#xa0;al., 2015</xref>) for plant anti-aging microorganisms, and found one of the strains, ITBB2-31 that strongly postponed aging and promoted the growth of <italic>W. microscopica</italic> (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2</bold>
</xref>-<xref ref-type="fig" rid="f5">
<bold>5</bold>
</xref>). The stay-green period of the axenic stock cultures was extended from less than one month to at least seven months (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>). This strain also extended the lifespan of the other duckweed strains in the genus Wolffia. Interestingly, besides the anti-aging and growth promoting effects, the fermented broth of ITBB2-31 inhibited the growth of <italic>W. microscopica</italic> at high concentrations, which was detoxified by autoclaving (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>), suggesting that ITBB2-31 has both promotion and inhibition effects on plant growth.</p>
</sec>
<sec id="s4_3">
<label>4.3</label>
<title>Anti-aging activity of microorganisms sreened by the <italic>W. microscopica-</italic>Ammonia system is effective to inhibit senescence of the other plant species</title>
<p>The anti-aging microorganism ITBB2-31 was screened using the <italic>W. microscopica-</italic>ammonia system. To test whether it is effective to inhibit the senescence of other plant species, we used a dark-detached system to induce senescence of the leaves of rubber tree and cassava. Darkness is an extreme light condition and is often used to induce rapid and synchronous senescence in detached leaves (<xref ref-type="bibr" rid="B85">Weaver and Amasino, 2001</xref>), and the dark-detached system has been widely used as a senescence model to study the age-triggered senescence (<xref ref-type="bibr" rid="B75">Song et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B86">Wei et&#xa0;al., 2017</xref>). Our results indicated that the exudates of ITBB2-31 was effective to inhibit dark-induced senescence of detached leaves of rubber tree and cassava (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>), suggesting that ammonia-induced senescence and dark-induced senescence may have shared signal transduction pathway.</p>
</sec>
<sec id="s4_4">
<label>4.4</label>
<title>Potential anti-aging and growth-inhibiting agents in ITBB2-31</title>
<p>Multiple compounds with either anti-aging or growth-inhibiting activities were identified through comparative metabolome analysis of filter-sterilized and autoclaved media of strain ITBB2-31. Both activities are suggested to come from a combination of compounds, since multiple compounds in the metabolites have been reported to have anti-aging or growth-inhibiting activities. In this research, a total of 1188 compounds were identified by LC-ESI-MS/MS analysis, and 102 compounds were shared by both filter-sterilized and autoclaved FMs (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7A</bold>
</xref>; <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S4</bold>
</xref>). To narrow down our search for the anti-aging compounds, we supposed the anti-aging agents to have similar relative abundance in both treatments, and set a cutoff value of 0.75 &lt; Rf/Ra &lt; 1.5, since the anti-aging agents are heat-stable (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). Seventeen compounds lay in the search scope, and biological functions of them were mined in literatures. Results indicated that some of them have been reported to have anti-aging effects in animals and/or plants, including 3-(2,4-dihydroxypentyl)-8-hydroxy-6-methoxyisochromen-1-one (an isocoumarin derivative) (<xref ref-type="bibr" rid="B64">Powers et&#xa0;al., 1989</xref>), indole-3-acetaldehyde (<xref ref-type="bibr" rid="B54">McClerklin et&#xa0;al., 2018</xref>), leupeptin (<xref ref-type="bibr" rid="B15">Carlin et&#xa0;al., 1994</xref>), muramic acid (<xref ref-type="bibr" rid="B46">Lehtonen et&#xa0;al., 1997</xref>), alpha-lapachone (<xref ref-type="bibr" rid="B18">Cho et&#xa0;al., 2006</xref>), and fatty acyls (<xref ref-type="bibr" rid="B89">Yu et&#xa0;al., 2020</xref>). Therefore, the anti-aging effects may come from a combination of compounds. Isocoumarin and derivatives have been shown to inhibit the activity of a variety of serine proteases (<xref ref-type="bibr" rid="B64">Powers et&#xa0;al., 1989</xref>), and potentially inhibit senescence. Indole-3-acetaldehyde is a precursor of indole-3-acetic acid (IAA) in Arabidopsis and is converted to IAA through a novel pathway (<xref ref-type="bibr" rid="B54">McClerklin et&#xa0;al., 2018</xref>). Leupeptin specifically inhibit the proteolytic activity in senescent cell lysates and potentially inhibit senescence of plants (<xref ref-type="bibr" rid="B15">Carlin et&#xa0;al., 1994</xref>). Muramic acid interacts with lectin in plants (<xref ref-type="bibr" rid="B9">Ayouba et&#xa0;al., 1991</xref>), and were detected in more percentage in young people than in the olds (<xref ref-type="bibr" rid="B46">Lehtonen et&#xa0;al., 1997</xref>). A plant alpha-lapachone has been proven to have antivascular activity in animal cells (<xref ref-type="bibr" rid="B24">Garkavtsev et&#xa0;al., 2011</xref>) and antifungal activity in plants (<xref ref-type="bibr" rid="B18">Cho et&#xa0;al., 2006</xref>). Benzoic acid derivatives from <italic>Bjerkandera adusta</italic> has been shown to modulate the proteostasis network, and likely to be anti-aging agents (<xref ref-type="bibr" rid="B26">Georgousaki et&#xa0;al., 2020</xref>). Fatty acyls are potential biomarkers related to the anti-aging effect of ginsenoside Rb1 (GRb1), an active ingredient of traditional Chinese medicine <italic>Panax ginseng</italic> C. A. Meyer (<xref ref-type="bibr" rid="B89">Yu et&#xa0;al., 2020</xref>).</p>
<p>To narrow down our search for potential growth-inhibiting agents, we set a cutoff value of 90% reduction of relative abundance in the autoclaved FM compared to that in the filter-sterilized FM, which is equivalent to Rf/Ra &gt; 9, since compounds that inhibited the growth of <italic>W. microscopica</italic> are sensitive to heat-treatment and presented only weak inhibition effect in the autoclaved FM (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). Among the compounds shared in both treatments, 13 compounds lay in our search scope, some of which have been reported to have toxic and/or growth-inhibiting effects, including S-adenosyl-L-homocysteine (<xref ref-type="bibr" rid="B58">Penyalver et&#xa0;al., 2009</xref>), 4-Hydroxyquinoline (<xref ref-type="bibr" rid="B19">Chung et&#xa0;al., 1989</xref>; <xref ref-type="bibr" rid="B36">Inderjit, Bajpai and Rajeswari, 2010</xref>), Ginkgolide A (<xref ref-type="bibr" rid="B84">Weakley et&#xa0;al., 2011</xref>), Phenylalanine (<xref ref-type="bibr" rid="B55">Nguyen et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B14">Cao et&#xa0;al., 2019</xref>), sparteine-15-carboxylic acid (<xref ref-type="bibr" rid="B8">Ashcroft et&#xa0;al., 1991</xref>), 3-hydroxypropanoic acid (<xref ref-type="bibr" rid="B90">Yung et&#xa0;al., 2016</xref>), and 2-hydroxyglutaric acid (<xref ref-type="bibr" rid="B12">Bjugstad et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B38">Keyser et&#xa0;al., 2008</xref>). S-adenosyl-L-homocysteine is a nucleotide analogue, its hydrolase gene ahcY is required for optimal growth of <italic>Agrobacterium radiobacter</italic> K84 (<xref ref-type="bibr" rid="B58">Penyalver et&#xa0;al., 2009</xref>), suggesting that S-adenosyl-L-homocysteine is a growth inhibitor. In our research, S-Adenosyl-L-homocysteine has a high content before autoclaving, but only 4% left after autoclaving, suggesting that it may take part in the growth inhibition of <italic>W. microscopica</italic>. 4-Hydroxyquinoline is an inhibitor of NADH-ubiquinone reductase in the respiratory chain of mitochondria (<xref ref-type="bibr" rid="B19">Chung et&#xa0;al., 1989</xref>); a similar compound, 8-hydroxyquinoline (HQ) is exuded from the roots of <italic>Centaurea diffusa</italic>, and reduce growth of the other plants (<xref ref-type="bibr" rid="B36">Inderjit, Bajpai and Rajeswari, 2010</xref>). Ginkgolide A inhibits vascular smooth muscle proliferation and reduces neointimal hyperplasia in a mouse model (<xref ref-type="bibr" rid="B84">Weakley et&#xa0;al., 2011</xref>). Phenylalanine inactivates kinases (<xref ref-type="bibr" rid="B55">Nguyen et&#xa0;al., 2014</xref>) and intestinal digestive enzymes (<xref ref-type="bibr" rid="B14">Cao et&#xa0;al., 2019</xref>) activities, and thus inhibits development. Sparteine derivatives are well known toxic alkaloids (<xref ref-type="bibr" rid="B62">Pothier et&#xa0;al., 1998</xref>), and have been shown to inhibit growth of monocots (<xref ref-type="bibr" rid="B56">Parmaki et&#xa0;al., 2018</xref>). 3-hydroxypropanoic acid has been shown to inhibit the growth of <italic>Escherichia coli</italic> (<xref ref-type="bibr" rid="B90">Yung et&#xa0;al., 2016</xref>).</p>
<p>Besides the compounds mentioned above, some other metabolites in the fermented media may have also taken part in either the anti-aging or the growth-inhibiting activities, since the cutoff values we used in the comparative analysis were relatively arbitrary to narrow down the search, however, they contribute only to a larger combination of the compounds.</p>
</sec>
<sec id="s4_5">
<label>4.5</label>
<title>Possible mechanism of ammonia-induced senescence in plants</title>
<p>Ammonium is often the preferred form of N nutrition for some higher plants such as eucalyptus (<xref ref-type="bibr" rid="B59">Pfautsch et&#xa0;al., 2009</xref>) and rice (<xref ref-type="bibr" rid="B74">Song et&#xa0;al., 2013</xref>), and to some extent delays leaf aging (<xref ref-type="bibr" rid="B22">Diaz et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B2">Aguera et&#xa0;al., 2010</xref>). However, ammonium inhibits the growth of many other plant species, including <italic>Arabidopsis thaliana</italic> (<xref ref-type="bibr" rid="B60">Podgorska et&#xa0;al., 2017</xref>). The toxicity of ammonium is associated with changes in the cellular redox state (<xref ref-type="bibr" rid="B61">Podgorska et&#xa0;al., 2015</xref>), and uncoupling of electron transport and respiration inhibition (<xref ref-type="bibr" rid="B29">Hachiya and Noguchi, 2011</xref>). The duckweed species <italic>W. microscopica</italic> is extremely sensitive to ammonium toxicity. In this study, a concentration of 0.5 mM of ammonium was enough to inhibit the growth of <italic>W. microscopica</italic> and induce its senescence. Moreover, the ammonium-induced senescence seemed to be associated with dark-induced senescence. The exudates of fungal strain ITBB2-31 that inhibited ammonia-induced senescence, inhibited dark-induced senescence of the rubber tree and cassava leaves (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>). Therefore, ammonia- and dark-induced senescence must have shared their signal transduction pathway. Ammonia-induced senescence has been reported in both mammals and plants (<xref ref-type="bibr" rid="B16">Chen and Kao, 1996</xref>; <xref ref-type="bibr" rid="B27">Gorg et&#xa0;al., 2015</xref>). Dark-induced senescence of detached maize leaves and water-stress induced senescence of detached rice leaves were associated with accumulation of ammonium ion (<xref ref-type="bibr" rid="B16">Chen and Kao, 1996</xref>; <xref ref-type="bibr" rid="B49">Lin and Kao, 1998</xref>). A decrease of glutamine synthase GS activity attributed to ammonium accumulation in maize and rice leaves (<xref ref-type="bibr" rid="B16">Chen and Kao, 1996</xref>; <xref ref-type="bibr" rid="B49">Lin and Kao, 1998</xref>; <xref ref-type="bibr" rid="B17">Chien and Kao, 2000</xref>), which in turn, increased tissue sensitivity to ethylene and accelerated leaf senescence (<xref ref-type="bibr" rid="B49">Lin and Kao, 1998</xref>). However, a later report showed that ammonia accumulation in detached rice leaves did not change tissue sensitivity to ethylene, and ruled out the possible involvement of ethylene in ammonia-induced senescence (<xref ref-type="bibr" rid="B50">Lin et&#xa0;al., 2002</xref>). Calcium effectively reduced ammonium-promoted senescence of detached rice leaves, suggesting that ammonium-induced senescence may be mediated through blocking the entrance of calcium ions into the cytosol (<xref ref-type="bibr" rid="B35">Hung and Kao, 1998</xref>).</p>
</sec>
</sec>
<sec id="s5" sec-type="conclusions">
<label>5</label>
<title>Conclusions</title>
<p>
<italic>W. microscopica</italic> was showed to be highly sensitive to ammonia-induced senescence, and can be served as a model plant to screen for plant anti-aging microorganisms. By co-culturing <italic>W. microscopica</italic> with endophytic microorgainisms isolated from rubber tree, an <italic>Aspergillus sclerotiorum</italic> strain ITBB2-31 that dramatically increased the lifespan and the biomass of <italic>W. microscopica</italic> was selected. Interestingly, both filter-sterilized and autoclaved exudates of this fungal strain prolonged the lifespan of <italic>W. microscopica</italic> cultures from 1 month to at least 7 months. Moreover, the anti-aging effect of this fungal exudate on the rubber tree and cassava leaves was significant, with an increase of chlorophyll contents by 50% - 350%. Additionally, high contents of filter-sterilized exudates remarkably restrained the growth of <italic>W. microscopica</italic> while extending its lifespan, but high contents of autoclaved exudates presented a weak inhibition effect of its growth. These results indicated that there were both heat-sensitive growth-inhibiting and heat-stable anti-aging agents in the exudates. Comparative metabolome analysis of the filter-sterilized and autoclaved exudates revealed multiple heat-stable anti-aging and heat-sensitive growth-inhibiting compounds. Our findings will be useful in large scale screening of microbes and compounds with anti-aging function, and will be beneficial to agriculture.</p>
</sec>
</body>
<back>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material.</bold>
</xref>
</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>DT: Investigation, Methodology, Validation, Writing &#x2013; original draft. LF: Investigation, Validation, Writing &#x2013; original draft. YY: Investigation, Validation, Writing &#x2013; original draft. XS: Methodology, Validation, Writing &#x2013; original draft. JZ: Conceptualization, Funding acquisition, Resources, Supervision, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing.</p>
</sec>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This research was supported in part by the Natural Science Foundation of China (32271932, 32271913), the Project of National Key Laboratory for Tropical Crop Breeding (NKLTCB202322), the Natural Science Foundation of Hainan Province (322RC761), and the Central Public-Interest Scientific Institution Basal Research Fund for Chinese Academy of Tropical Agricultural Sciences (1630052020020, 1630052020022).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We are thankful to Prof. Klaus-J. Appenroth at University of Jena, Germany and Dr. K. Sowjanya Sree at Central University of Kerala, India for providing the duckweed strains 2001 and 2008. Thanks also to Mr. Zhiwei Xu at the Hainan Entry-Exit Inspection and Quarantine Bureau and Dr. Fandong Kong at the Institute of Tropical Bioscience and Biotechnology, CATAS for their technical help in Mass spectrometry. Mr. Long Xu, Mr. Zhenyu Zhang, and Miss Yuepan Ren provided technical help in some of the research.</p>
</ack>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fpls.2024.1480588/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fpls.2024.1480588/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Table1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document"/>
<supplementary-material xlink:href="Table2.xlsx" id="SM2" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet"/>
<supplementary-material xlink:href="Image1.jpeg" id="SF1" mimetype="image/jpeg"/>
</sec>
<fn-group>
<title>Abbreviations</title>
<fn fn-type="abbr" id="abbrev1">
<p>MH, Modified Hoagland medium; FM, fermented MH broth; MS, Mass spectrometry; LC-MS/MS, Liquid chromatography tandem mass spectrometry; Rf, Relative abundance in the filter-sterilized medium; Ra, Relative abundance in the autoclaved medium.</p>
</fn>
</fn-group>
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