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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2024.1338596</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Variations in species diversity patterns and community assembly rules among vegetation types in the karst landscape</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Meng</surname>
<given-names>Longchenxi</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Yong</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Luyao</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Sui</surname>
<given-names>Mingzhen</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Guangqi</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Qingfu</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Danmei</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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<contrib contrib-type="author">
<name>
<surname>Wu</surname>
<given-names>Yuhang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
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<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Zeyu</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Shiren</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Rui</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
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<contrib contrib-type="author" corresp="yes">
<name>
<surname>Zang</surname>
<given-names>Lipeng</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
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<aff id="aff1">
<sup>1</sup>
<institution>Research Center of Forest Ecology, College of Forestry, Guizhou University</institution>, <addr-line>Guiyang</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Guizhou Libo Karst Forest Ecosystem National Observation and Research Station, National Forestry and Grassland Administration</institution>, <addr-line>Libo</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Qing Zhang, Inner Mongolia University, China</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Sileshi Gudeta Weldesemayat, University of KwaZulu-Natal, South Africa</p>
<p>Gopal Shankar Singh, Banaras Hindu University, India</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Lipeng Zang, <email xlink:href="mailto:cafzanglp@163.com">cafzanglp@163.com</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>22</day>
<month>02</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1338596</elocation-id>
<history>
<date date-type="received">
<day>14</day>
<month>11</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>07</day>
<month>02</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Meng, Li, Chen, Sui, Zhang, Liu, Chen, Wu, Yang, Chen, Yang and Zang</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Meng, Li, Chen, Sui, Zhang, Liu, Chen, Wu, Yang, Chen, Yang and Zang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The various vegetation types in the karst landscape have been considered the results of heterogeneous habitats. However, the lack of a comprehensive understanding of regional biodiversity patterns and the underlying ecological processes limits further research on ecological management. This study established forest dynamic plots (FDPs) of the dominant vegetation types (shrubland, SL; mixed tree and shrub forest, MTSF; coniferous forest, CF; coniferous broadleaf mixed forest, CBMF; and broadleaf forest, BF) in the karst landscape and quantified the species diversity patterns and potential ecological processes. The results showed that in terms of diversity patterns, the evenness and species richness of the CF community were significantly lower than other vegetation types, while the BF community had the highest species richness. The other three vegetation types showed no significant variation in species richness and evenness. However, when controlling the number of individuals of FDPs, the rarefied species richness showed significant differences and ranked as BF &gt; SL &gt; MTSF &gt; CBMF &gt; CF, highlighting the importance of considering the impacts of abundance. Additionally, the community assembly of climax communities (CF or BF) was dominated by stochastic processes such as species dispersal or species formation, whereas deterministic processes (habitat filtering) dominated the secondary forests (SL, MTSF, and CBMF). These findings proved that community assembly differs mainly between the climax community and other communities. Hence, it is crucial to consider the biodiversity and of the potential underlying ecological processes together when studying regional ecology and management, particularly in heterogeneous ecosystems.</p>
</abstract>
<kwd-group>
<kwd>vegetation types</kwd>
<kwd>community assembly</kwd>
<kwd>karst landscape</kwd>
<kwd>species diversity</kwd>
<kwd>species abundance distribution</kwd>
</kwd-group>
<contract-num rid="cn001">32360380, 32360278</contract-num>
<contract-sponsor id="cn001">National Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content>
</contract-sponsor>
<counts>
<fig-count count="5"/>
<table-count count="1"/>
<equation-count count="4"/>
<ref-count count="76"/>
<page-count count="11"/>
<word-count count="5204"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Functional Plant Ecology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>As the global species extinction rate increases with habitat degradation, maintaining biodiversity has become a severe ecological issue, especially in extreme ecosystems (<xref ref-type="bibr" rid="B3">Butchart et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B26">Johnson et&#xa0;al., 2017</xref>). Previous studies suggested that biodiversity reflects the extent of the history of life on Earth and serves as an essential foundation for ecosystem sustainability (<xref ref-type="bibr" rid="B19">GE, 2017</xref>; <xref ref-type="bibr" rid="B38">Mi et&#xa0;al., 2021</xref>). The four levels of biodiversity include gene, species, ecosystem, and landscape, and species diversity is crucial for biodiversity conservation as it directly reflects the community structure, stability, and development stage (<xref ref-type="bibr" rid="B62">Wang et&#xa0;al., 2022</xref>). Numerous studies have explored large-scale species richness variations along elevation or latitude (<xref ref-type="bibr" rid="B8">Chen et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B18">Fontana et&#xa0;al., 2020</xref>). However, the regional diversity patterns and driving mechanisms among vegetation types are unclear, thus requiring academic attention.</p>
<p>A growing body of studies showed that species richness depends heavily on abundance (<xref ref-type="bibr" rid="B66">Xue et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B14">Feng et&#xa0;al., 2022</xref>), emphasizing the importance of considering the confusing impacts of abundance accumulation. However, researchers prefer to correct rather than quantifying confusing impacts of sample sizes. Consequently, the current challenges under confusing impacts of sample sizes leads to a misunderstanding of species diversity patterns in ecological researches (<xref ref-type="bibr" rid="B14">Feng et&#xa0;al., 2022</xref>). Despite its intuitiveness and universality, species richness is oversimplifying as it is determined by combining the total numbers of species (<xref ref-type="bibr" rid="B5">Chao et&#xa0;al., 2014</xref>), and it increases nonlinearly with the increasing sampling size (<xref ref-type="bibr" rid="B7">Chase et&#xa0;al., 2018</xref>). Therefore, in addition to the traditional richness index, more convictive indices such as the rarefied species richness should be employed to address the impact of varying sample sizes when exploring species diversity pattern differences (<xref ref-type="bibr" rid="B50">Roswell et&#xa0;al., 2021</xref>). Although species richness and species evenness are both important components of species diversity, previous studies focused mainly on species richness while seldom considering species evenness (<xref ref-type="bibr" rid="B23">Huang et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B59">Villa et&#xa0;al., 2018</xref>). Since the mono diversity index can not account for various community components and almost all ecological factors or processes in a community can potentially affect species abundance or regulate species relative abundances (<xref ref-type="bibr" rid="B15">Feng et&#xa0;al., 2021</xref>), the species diversity patterns must be explored based on comprehensive, multi-index measurements rather than a single component.</p>
<p>Species abundance distribution (SAD) effectively reflects the species richness and evenness as it directly quantifies the species and its dominance in the community (<xref ref-type="bibr" rid="B37">McGill et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B1">Baldridge et&#xa0;al., 2016</xref>). However, the multiple dimensions and components of biodiversity render it difficult to identify the model fitting the SADs best and, in turn, reveal species diversity patterns (<xref ref-type="bibr" rid="B14">Feng et&#xa0;al., 2022</xref>). In addition to revealing the biodiversity patterns, determining the ecological process driving the observed biodiversity patterns is another crucial unsolved issue. Traditional niche theory holds that species coexist and maintain diversity over time only if specific factors, such as niche differentiation, prevail during community construction (<xref ref-type="bibr" rid="B21">Haegeman and Loreau, 2011</xref>). However, this theory faces a vital challenge in explaining why so many species with similar niche spaces coexist at the local scale. Neutral theory proposed by <xref ref-type="bibr" rid="B24">Hubbell (2001)</xref> suggests that species exhibit similar population dynamics due to shared characteristics. Stochastic processes control community construction, including birth, death, colonization, and speciation (<xref ref-type="bibr" rid="B76">Zhou and Ning, 2017</xref>). Numerous studies indicated that both deterministic and stochastic processes contributed to community construction (<xref ref-type="bibr" rid="B60">Vilmi et&#xa0;al., 2021</xref>). Various deterministic and stochastic processes acting across scales form the actual community (<xref ref-type="bibr" rid="B70">Yuan et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B56">Su et&#xa0;al., 2023</xref>). Normally, species diversity pattern variations are primarily affected by dispersal limitations, local species pools, habitat filtering, and species interactions at local scales (<xref ref-type="bibr" rid="B51">Sabatini et&#xa0;al., 2022</xref>). However, the processes maintaining the species diversity patterns and the extent are still under debate. Previous research indicated that species dispersal limitations and habitat filtering played distinct roles in the plant community across the environmental gradients (<xref ref-type="bibr" rid="B17">Flinn et&#xa0;al., 2010</xref>). <xref ref-type="bibr" rid="B54">Sperry et&#xa0;al. (2019)</xref> found that species migrated from high-diversity areas to low-diversity areas, and species with greater dispersal abilities were more likely to spread from high-diversity areas to low-diversity areas. A study by <xref ref-type="bibr" rid="B44">Parra-Tabla et&#xa0;al. (2018)</xref> concluded that habitat filtering constitute a major driver of plant diversity and species composition.</p>
<p>Constructing suitable models to fit SAD curves can well reflect various community structures and the underlying ecological processes (<xref ref-type="bibr" rid="B57">Tan et&#xa0;al., 2020</xref>). For example, the most common lognormal and logseries methods depict different scenarios of the relative abundance of species relative to the size and structure of an assemblage (<xref ref-type="bibr" rid="B33">Magurran, 2021</xref>). The logseries distribution derives from Poisson sampling of a gamma distribution, while the lognormal distribution represents a situation in which the logarithms of the different species&#x2019; abundances follow a Gaussian distribution (<xref ref-type="bibr" rid="B36">Matthews and Whittaker, 2014b</xref>). Previous studies suggested three steps for fitting and evaluating SAD models: 1) fitting the model and estimating the parameters; 2) determining the goodness of fit of the model; and 3) comparing the goodness of fit of the model with that of other models (<xref ref-type="bibr" rid="B35">Matthews and Whittaker, 2014a</xref>). In recent years, many studies have attempted to describe the shape of the SAD distribution, and quantifying the shape of SAD facilitates the detection of SAD differences and the identification of their drivers (<xref ref-type="bibr" rid="B1">Baldridge et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B15">Feng et&#xa0;al., 2021</xref>). For example, <xref ref-type="bibr" rid="B69">Yin et&#xa0;al. (2018)</xref> found that the SADs of the log Cauchy model could better reveal the inherent features of community structure and dynamics. <xref ref-type="bibr" rid="B46">Qiao et&#xa0;al. (2015)</xref> fitted a non-neutral model of community assembly to these SADs, calculated the fitted deviation from neutrality, and observed the correlations between the fitted deviation from neutrality and geographical and environmental variations. The neutral community model (NCM) has been considered a convictive local-scale model to predict the SADs and reveal the ecological processes (<xref ref-type="bibr" rid="B35">Matthews and Whittaker, 2014a</xref>). By comparing the actual SAD with the zero-sum multinomial distribution, a most important hypothesis of neutral theory, the dominant ecological process can be determined. However, NCM allows species to have a competitive advantage or disadvantage, and the nearly neutral model transforms the model into a continuous form (<xref ref-type="bibr" rid="B53">Sloan et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B9">Chen et&#xa0;al., 2019</xref>).</p>
<p>Karst landform is an exceptionally distinctive geological phenomenon, rising to vegetation types that are entirely distinct from subtropical evergreen broadleaf forests at the same latitudes, normally characterized by subtropical mixed evergreen and deciduous broad-leaved forests (<xref ref-type="bibr" rid="B11">Dai et&#xa0;al., 2023</xref>). Due to shallow soil layers and poor water retention and fertility capabilities, the karst forest is vulnerable to various anthropogenic disturbances such as logging, commercial exploitation and shifting cultivation (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 2023</xref>). During the last century, it facing various degradation to shrubland or other vegetation types, even degradation of rocky desertification, with biodiversity lost and ecosystem functioning disordered (<xref ref-type="bibr" rid="B68">Yao et&#xa0;al., 2023</xref>). Balancing environmental quality and societal development has been a fundamental issue for regional environmental management. Previous studies have focused on soil properties and microbial community structure under various vegetation types (<xref ref-type="bibr" rid="B67">Yan et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B20">Guan et&#xa0;al., 2022</xref>; <xref ref-type="bibr" rid="B31">Lu et&#xa0;al., 2022</xref>). However, as the basis for understanding regional environment management, the plant biodiversity pattern and its underlying ecological processes among various vegetation types have received less consideration, which should be the scientific basis of regional environmental management. Thus, by establishing FDPs in dominant vegetation types and quantifying the species biodiversity patterns, this study aimed to solve the following questions: (1) How do species diversity patterns vary among vegetation types in karst landscape? (2) What process determines the variations in diversity patterns?</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Study area and data collection</title>
<p>This study was conducted at Maolan National Nature Reserve (107&#xb0;52&#x2019;E to 108&#xb0;05&#x2019;E and 25&#xb0;09&#x2019;N to 25&#xb0;20&#x2019;N) (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>), with a total area of 21,285 hectares. It is the only remaining, original, stable karst forest system at the same latitude worldwide, with a mean elevation of 800&#xa0;m. The rocks in the region consist predominantly of pure carbonate limestone and dolomite, while the soil is primarily weakly alkaline black lime soil. The region has an average annual temperature of 15.3&#xb0;C, averaging 5.2&#xb0;C in January and 23.5&#xb0;C in July. The growing period spans 237 days, while the frost-free period totals 10 days. The annual precipitation is 1752&#xa0;mm, typically from May to October. Additionally, the annual average relative humidity is 83% (<xref ref-type="bibr" rid="B73">Zhang et&#xa0;al., 2012</xref>). The most widely distributed vegetation types in the nature reserve include SL, MTSF, CF, CBMF, and BF. The SL communities are mainly dominated by <italic>Cornus parviflora</italic> and <italic>Celtis sinensis</italic>, while <italic>Liquidambar formosana</italic> and <italic>Castanopsis fargesii</italic> were the dominant species in CF. <italic>Pinus kwangtungensis</italic> was the constructive species in the CF, and <italic>Pinus massoniana</italic> was the dominant species in CBMF. In addition, <italic>Acer wangchii</italic> and <italic>Boniodendron minus</italic> were the dominant species in BF.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Geographic location and sampling site of the study areas. SL, shrubland; MTSF, mixed tree and shrub forest; CF, coniferous forest; CBMF, coniferous broadleaf mixed forest; BF, broadleaf forest.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1338596-g001.tif"/>
</fig>
<p>According to the standard raised by <xref ref-type="bibr" rid="B10">Condit (1998)</xref> for the standard handbook of forest dynamic plots (FDPs) establishment, we established 9 to 10 FDPs for each of five dominant vegetation types: shrubland (SL), mixed tree and shrub forest (MTSF), coniferous forest (CF), coniferous broadleaf mixed forest (CBMF), and broadleaf forest (BF) (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). The distance between every two plots is greater than 50&#xa0;m to avoid the confusing impacts of spatial autocorrelation and ecotone and all the woody individuals with DBH &gt; 1&#xa0;cm in the FDPs were tagged, measured, and identified to species (<xref ref-type="bibr" rid="B10">Condit, 1998</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Basic information of the established plots: shrubland (SL), mixed tree and shrub forest (MTSF), coniferous forest (CF), coniferous broadleaf mixed forest (CBMF), and broadleaf forest (BF).</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Vegetation types</th>
<th valign="middle" align="center">Number</th>
<th valign="middle" align="center">Area (m<sup>2</sup>)</th>
<th valign="middle" align="center">Elevation(m)</th>
<th valign="middle" align="center">Slope</th>
<th valign="middle" align="center">Latitude</th>
<th valign="middle" align="center">Longitude</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="center">SL</td>
<td valign="middle" align="center">10</td>
<td valign="middle" align="center">100</td>
<td valign="middle" align="center">762-866</td>
<td valign="middle" align="center">10&#xb0;-30&#xb0;</td>
<td valign="middle" align="center">25&#xb0;09&#x2032;55&#x2033;-25&#xb0;26&#x2032;19&#x2033;</td>
<td valign="middle" align="center">107&#xb0;46&#x2032;56&#x2033;-107&#xb0;56&#x2032;19&#x2033;</td>
</tr>
<tr>
<td valign="middle" align="center">MTSF</td>
<td valign="middle" align="center">10</td>
<td valign="middle" align="center">400</td>
<td valign="middle" align="center">334-870</td>
<td valign="middle" align="center">5&#xb0;-45&#xb0;</td>
<td valign="middle" align="center">25&#xb0;28&#x2032;02&#x2033;-25&#xb0;32&#x2032;06&#x2033;</td>
<td valign="middle" align="center">107&#xb0;50&#x2032;26&#x2033;-108&#xb0;16&#x2032;30&#x2033;</td>
</tr>
<tr>
<td valign="middle" align="center">CF</td>
<td valign="middle" align="center">9</td>
<td valign="middle" align="center">400</td>
<td valign="middle" align="center">851-950</td>
<td valign="middle" align="center">20&#xb0;-60&#xb0;</td>
<td valign="middle" align="center">25&#xb0;35&#x2032;35&#x2033;-25&#xb0;36&#x2032;16&#x2033;</td>
<td valign="middle" align="center">107&#xb0;42&#x2032;21&#x2033;-107&#xb0;42&#x2032;31&#x2033;</td>
</tr>
<tr>
<td valign="middle" align="center">CBMF</td>
<td valign="middle" align="center">9</td>
<td valign="middle" align="center">400</td>
<td valign="middle" align="center">400-799</td>
<td valign="middle" align="center">10&#xb0;-35&#xb0;</td>
<td valign="middle" align="center">25&#xb0;25&#x2032;57&#x2033;-25&#xb0;33&#x2032;25&#x2033;</td>
<td valign="middle" align="center">107&#xb0;42&#x2032;10&#x2033;-108&#xb0;13&#x2032;47&#x2033;</td>
</tr>
<tr>
<td valign="middle" align="center">BF</td>
<td valign="middle" align="center">10</td>
<td valign="middle" align="center">400</td>
<td valign="middle" align="center">743-840</td>
<td valign="middle" align="center">7&#xb0;-32&#xb0;</td>
<td valign="middle" align="center">25&#xb0;11&#x2032;46&#x2033;-25&#xb0;14&#x2032;03&#x2033;</td>
<td valign="middle" align="center">107&#xb0;54&#x2032;55&#x2033;-107&#xb0;56&#x2032;02&#x2033;</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Statistical approaches</title>
<sec id="s2_2_1">
<label>2.2.1</label>
<title>Variations in species &#x3b1;-diversity patterns among vegetation types</title>
<p>In this study, &#x3b1;-diversity was quantified based on Margalef&#x2019;s index (<xref ref-type="disp-formula" rid="eq1">Equation 1</xref>) and Pielou&#x2019;s index (<xref ref-type="disp-formula" rid="eq2">Equation 2</xref>) (<xref ref-type="bibr" rid="B34">Margalef, 1957</xref>; <xref ref-type="bibr" rid="B29">Levins, 1970</xref>). To eliminate the influence of sample size on the diversity index, the Rarefied species richness index (<xref ref-type="disp-formula" rid="eq3">Equation 3</xref>) (Rarefied SR) was used as an auxiliary parameter for diversity comparison (<xref ref-type="bibr" rid="B25">Hurlbert, 1971</xref>). One-way ANOVA was adopted to reveal the significance of the differences among vegetation types. The specific formula is as follows:</p>
<disp-formula id="eq1">
<label>(1)</label>
<mml:math display="block" id="M1">
<mml:mrow>
<mml:mi>M</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>r</mml:mi>
<mml:mi>g</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>l</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>f</mml:mi>
<mml:mo>'</mml:mo>
<mml:mi>s</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>i</mml:mi>
<mml:mi>n</mml:mi>
<mml:mi>d</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>x</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>=</mml:mo>
<mml:mfrac bevelled="true">
<mml:mrow>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:mi mathvariant="italic">ln</mml:mi>
<mml:mi>N</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<disp-formula id="eq2">
<label>(2)</label>
<mml:math display="block" id="M2">
<mml:mrow>
<mml:mi>P</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>l</mml:mi>
<mml:mi>o</mml:mi>
<mml:msup>
<mml:mi>u</mml:mi>
<mml:mo>&#x2032;</mml:mo>
</mml:msup>
<mml:mi>s</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>i</mml:mi>
<mml:mi>n</mml:mi>
<mml:mi>d</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>x</mml:mi>
<mml:mo>=</mml:mo>
<mml:mfrac bevelled="true">
<mml:mi>H</mml:mi>
<mml:mrow>
<mml:mi>l</mml:mi>
<mml:mi>n</mml:mi>
<mml:mi>S</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<disp-formula id="eq3">
<label>(3)</label>
<mml:math display="block" id="M3">
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>r</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>f</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>d</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>S</mml:mi>
<mml:mi>R</mml:mi>
<mml:mo>=</mml:mo>
<mml:msubsup>
<mml:mo>&#x2211;</mml:mo>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mi>S</mml:mi>
</mml:msubsup>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>N</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>x</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mi>n</mml:mi>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:mfrac>
<mml:mi>N</mml:mi>
<mml:mi>n</mml:mi>
</mml:mfrac>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>S</italic> is the number of species, <italic>N</italic> is the total number of individuals of all species, and <italic>n</italic> is the size of samples taken during the sparsity process. In this study, <italic>n</italic> = 10, <italic>x<sub>i</sub>
</italic> is the abundance of species <italic>i</italic>, <inline-formula>
<mml:math display="inline" id="im1">
<mml:mrow>
<mml:mi>H</mml:mi>
<mml:mo>=</mml:mo>
<mml:msubsup>
<mml:mo>&#x2211;</mml:mo>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mi>s</mml:mi>
</mml:msubsup>
<mml:msub>
<mml:mi>P</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>l</mml:mi>
<mml:mi>n</mml:mi>
<mml:msub>
<mml:mi>P</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>, and <italic>P<sub>i</sub>
</italic> is the relative abundance of species <italic>i</italic>.</p>
<p>The plant importance value (IV) index (<xref ref-type="disp-formula" rid="eq4">Equation 4</xref>) is calculated with the following formulas (<xref ref-type="bibr" rid="B52">Skeen, 1973</xref>):</p>
<disp-formula id="eq4">
<label>(4)</label>
<mml:math display="block" id="M4">
<mml:mrow>
<mml:mtext>IV</mml:mtext>
<mml:mo>=</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mi>f</mml:mi>
</mml:msub>
<mml:mi>&#xff0b;</mml:mi>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mi>d</mml:mi>
</mml:msub>
<mml:mi>&#xff0b;</mml:mi>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>d</mml:mi>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo stretchy="false">/</mml:mo>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:math>
</disp-formula>
<p>In the formula <inline-formula>
<mml:math display="inline" id="im2">
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mi>f</mml:mi>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mi>s</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mi>f</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</inline-formula>, <italic>R<sub>f</sub>
</italic> is the relative frequency, <italic>F<sub>s</sub>
</italic> is the frequency of species occurrence, and <italic>T<sub>f</sub>
</italic> is the total frequency of all species. In <inline-formula>
<mml:math display="inline" id="im3">
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mi>d</mml:mi>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>D</mml:mi>
<mml:mi>s</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mi>s</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</inline-formula>, <italic>R<sub>d</sub>
</italic> is the relative density, <italic>D<sub>s</sub>
</italic> is the species density, and <italic>T<sub>s</sub>
</italic> is the total species density. In the formula <inline-formula>
<mml:math display="inline" id="im4">
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>d</mml:mi>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>D</mml:mi>
<mml:mrow>
<mml:mi>o</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mi>d</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</inline-formula>, <italic>R<sub>do</sub>
</italic> is the relative significance, <italic>D<sub>os</sub>
</italic> is the species significance, and <italic>T<sub>d</sub>
</italic> is the total significance of all species.</p>
<p>Community composition was evaluated by applying a <italic>Bray-Curtis</italic> dissimilarity index to an untransformed abundance matrix for each vegetation types, and then a nonmetric multidimensional scaling method (NMDS) using the &#x2018;metaMDS&#x2019; function of the &#x2018;vegan&#x2019; package in R statistical software was adopted to illustrated results (<xref ref-type="bibr" rid="B41">Murray-Stoker and Murray-Stoker, 2020</xref>). The function has a stable solution with several random starts and standardizes the scaling in the results through principal component rotation. In this way, the variance of the points along the first axis is maximized so that the configurations are easier to interpret. Whether the graph accurately reflects the actual data ordering distribution can be determined based on the stress values. A stress value closer to 0 indicates a better dimensionality reduction effect. The number of dimensions was set to 2 to minimize the stress (<xref ref-type="bibr" rid="B42">Norden et&#xa0;al., 2009</xref>).</p>
</sec>
<sec id="s2_2_2">
<label>2.2.2</label>
<title>Variation in first-order community assembly among vegetation types</title>
<p>The SAD curves usually represent the species richness and evenness. The horizontal axis is ranking of species number, while the vertical axis is the actual abundance value. Species richness denotes the number of varied species in the diagram, whereas species evenness is represented by the slope of the curve (<xref ref-type="bibr" rid="B1">Baldridge et&#xa0;al., 2016</xref>). The species accumulation curve reflects the cumulative changes in the number of recorded species as the sample size increases within a specific environment. It helps to assess the total number of species in a given area and compare species diversity among different communities.</p>
<p>To estimate the effects of stochastic processes on the plant community assembly among vegetation types, <xref ref-type="bibr" rid="B53">Sloan et&#xa0;al. (2006)</xref> constructed an NCM, applying non-linear least-squares to generate the best fit between the frequency of species occurrence and their relative abundance. The R<sup>2</sup> value indicates the goodness of fit of the model and is calculated with the &#x201c;&#xd6;stman&#x2019;s method&#x201d; (<xref ref-type="bibr" rid="B43">&#xd6;stman et&#xa0;al., 2010</xref>). When R<sup>2</sup> is close to 1, the community assembly is fully consistent with stochastic processes. When not describing the community composition, R<sup>2</sup> can be &#x2264; 0. Here, Nm represented the relationship between the probability of occurrence and the relative abundance in the region (<xref ref-type="bibr" rid="B9">Chen et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B39">Mo et&#xa0;al., 2021</xref>).</p>
<p>All data were analyzed using &#x201c;Hmisc&#x201d;, &#x201c;stats4&#x201d;, &#x201c;minpack.lm&#x201d;, &#x201c;vegan&#x201d;, and other packages in R 4.2.2 (<xref ref-type="bibr" rid="B49">R Core Team, 2022</xref>).</p>
</sec>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Result</title>
<sec id="s3_1">
<label>3.1</label>
<title>Species composition among vegetation types</title>
<p>The NMDS show the stress is less than 2, the result is meaningful, furthermore significant differences between CF and other vegetation types on one axis, and its most concentrated on two-axis. Therefore, significant species composition differences between CF and other vegetation types, and the species composition of CBMF was similar to that of MTSF and significantly different from that of BF and CF. (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). The dominant species varies among vegetation types. SL is dominated by <italic>C. parviflora</italic>, with an IV of 6.92, while MTSF is dominated by <italic>L. formosana</italic>, with an IV of 10.27. As for CF, <italic>P. kwangtungensis</italic> is the dominant species, with an IV of 43.03, and <italic>P. massoniana</italic> dominates CBMF, with an IV of 23.73.&#xa0;A<italic>. wangchii</italic>, <italic>B. minus</italic> (6.03), and <italic>Platycarya strobilacea</italic> (4.69) are the dominant species in BF (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S1</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Non-metric multidimensional scaling (NMDS) ordination based on Bray-Curtis dissimilarity showing the community composition variations of the five vegetation types. SL, shrubland; MTSF, mixed tree and shrub forest; CF, coniferous forest; CBMF, coniferous broadleaf mixed forest; BF, broadleaf forest.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1338596-g002.tif"/>
</fig>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Species &#x3b1;-diversity index variations among vegetation types</title>
<p>BF had the highest Margalef&#x2019;s index of species richness among the five vegetation types, indicating the most species in plots. No significant variation was found among the other four vegetation types in Margalef&#x2019;s index (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). The Pielou&#x2019;s index of species evenness of CF was significantly lower than those of the other four vegetation types, indicating a significant species dominance trend compared with other vegetation types (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>). The rarefied species richness results showed significant observed variations among all five vegetation types after controlling the confusing impacts of abundance. Besides, the BF still had the highest richness and significantly different from other vegetation types, and the CF is the lowest and significantly different from SL and MTSF (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3C</bold>
</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Variations in Margalef&#x2019;s index of species richness <bold>(A)</bold>, Pielou&#x2019;s index of species evenness <bold>(B)</bold>, and Rarefied species richness <bold>(C)</bold> among vegetation types. Multiple comparison tests were performed to determine the statistical significance, with <italic>p</italic> &lt; 0.05 indicating significance. Scales labeled with identical letters have insignificant differences in their community feature values, and scales labeled with different letters have significant differences in their community feature values.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1338596-g003.tif"/>
</fig>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>SADs and first-order assembly processes among vegetation types in karst landscape</title>
<p>CF has the highest decline rate and similar trends were observed on the species rank-abundance curves of MTSF and CBMF. BF and SL has slow decline rate on the species rank-abundance curves, which had lower species evenness than CF, MTSF and CBMF (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>). On the species accumulation curve, MTSF showed a similar trend to that of CBMF, and the species accumulation rate of CF was lower than other vegetation types and BF was largest (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Species abundance distribution among vegetation types: <bold>(A)</bold> Species rank-abundance distribution curves. <bold>(B)</bold> Species-abundance accumulation curves.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1338596-g004.tif"/>
</fig>
<p>The NCM results showed that the <italic>R<sup>2</sup>
</italic> of CF (0.679) and BF (0.533) were significantly higher than the other three vegetation types, suggesting that the neutral process dominated the community assembly in BF and CF, while the niche process dominated the community assembly of the other three vegetation types (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>). In addition, the highest <italic>Nm</italic> value in BF suggested a greater degree of species diffusion than other communities.</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Fit of neutral community models(NCM) of community assembly among vegetation types. <bold>(A)</bold> NCM of shrubland. <bold>(B)</bold> NCM  of mixed tree and shrub forest. <bold>(C)</bold> NCM  of coniferous forest . <bold>(D)</bold> NCM  of coniferous broadleaf mixed forest. <bold>(E)</bold> NCM  of broadleaf forest. The predicted occurrence frequencies for the variations among vegetation types, plants, and communities, representing the differences in community ecological processes. The solid blue line is the best fit for the neutral community model (NCM) by <xref ref-type="bibr" rid="B53">Sloan et&#xa0;al. (2006)</xref>, and the dashed blue line indicates 95% confidence intervals around the NCM prediction. Plants occurring more or less frequently than the NCM predictions are shown in green and red, respectively. <italic>R<sup>2</sup>
</italic> represents the fit of this model. <italic>Nm</italic> indicates the community size times immigration.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-15-1338596-g005.tif"/>
</fig>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<p>This study compared the patterns of species diversity and potential community assembly of five vegetation types within the Maolan National Nature Reserve. The findings indicated that the CF community within the reserve exhibited strong uniqueness, with significant differences in species &#x3b1;-diversity and species composition. In terms of community assembly, significant differences were observed between the climax communities of CF and BF and the secondary SL, MTSF, and CBMF in the karst landscape.</p>
<sec id="s4_1">
<label>4.1</label>
<title>Biodiversity patterns among vegetation types</title>
<p>As the comprehensive component of biodiversity, species composition can reflect the ecosystem structure and function (<xref ref-type="bibr" rid="B48">Rahman et&#xa0;al., 2022</xref>). Since the species diversity pattern involves the number of species and the species evenness, any changes in both components can lead to species composition variations (<xref ref-type="bibr" rid="B5">Chao et&#xa0;al., 2014</xref>). Our results showed significant variations among vegetation types in the karst landscape (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). Among all the five vegetation types, BF had the highest species richness, and CF had the lowest Pielou&#x2019;s index of species evenness (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>).</p>
<p>As a single dominant species in CF communities, <italic>P. kwangtungensis</italic> significantly controls the vegetation type structure and the community environment formation, with no obvious subdominant species and numerous rare species with low species evenness (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>; <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S1</bold>
</xref>). CF is normally distributed in habitats with higher altitudes or deeper slopes, where fewer species could colonize (<xref ref-type="bibr" rid="B63">Wang and Cui, 2023</xref>). Additionally, the aggregation strength of <italic>P. kwangtungensis</italic> increases with increasing elevation, thus occupying the niche space of other species. This could explain the lower species richness and evenness in CF than other vegetation types. On the other hand, the higher migration rate of rare species in CF inhibits the increase of species richness, leading to a pattern with a lower species richness and slower species accumulation rate (<xref ref-type="bibr" rid="B55">Stanley Harpole and Tilman, 2006</xref>; <xref ref-type="bibr" rid="B65">Xu et&#xa0;al., 2019</xref>). <xref ref-type="bibr" rid="B58">Thorn et&#xa0;al. (2020)</xref> found that rare species were the main factor of species composition differences. A higher rare species proportion in CF might be the main reason for its species composition variation compared with others (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). Consistent with the results of <xref ref-type="bibr" rid="B73">Zhang et&#xa0;al. (2012)</xref>, our results showed that BF had the highest species richness and fastest species accumulation rate, with no obvious dominant species. BF in this study was established in subtropical evergreen deciduous broadleaf mixed forest, considered the climax in the karst landscape. Such a community normally features a complex community structure and a higher species richness (<xref ref-type="bibr" rid="B45">Qi et&#xa0;al., 2021</xref>). BF is used to considered in a relatively favorable environment. The relatively higher soil quality results in more individuals or abundance, possibly leading to a pattern with higher species richness (<xref ref-type="bibr" rid="B72">Zhang et&#xa0;al., 2022b</xref>). In addition, the stronger habitat heterogeneity at local scales supports various micro-habitats, which helps feed more species (<xref ref-type="bibr" rid="B2">B&#xe1;tori et&#xa0;al., 2023</xref>). Thus, the relatively higher quality of habitat conditions and the stronger habitat heterogeneity might be the main reason for high species richness and evenness.</p>
<p>However, the species richness differed greatly among the five vegetation types after controlling the confusing impacts of abundance. A significant trend of BF &gt; SL &gt; MTSF &gt; CBMF &gt; CF was found in terms of rarefied species richness, which emphasized the importance of considering the impacts of sample size. In other words, individual variations among vegetation types could lead to a misunderstanding of species richness in the karst landscape. The species richness of SL was significantly higher than MTSF and CBMF after removing the influence of abundance on species richness (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3C</bold>
</xref>). In addition, the species richness of MTSF was significantly higher than that of CBMF, SL and MTSF are common secondary forests in karst areas, dominated by species such as <italic>C. parviflora</italic>, <italic>L. formosana</italic>, and <italic>C. sinensis</italic> (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S1</bold>
</xref>). The lack of human disturbance allows shrubs to persist, with small-diameter tree species being the mainstay, leading to a scattered community advantage. Therefore, their species accumulation rates are second only to that of BF (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>), with high species evenness and no significant differences in species composition from other vegetation types except CF. <xref ref-type="bibr" rid="B64">Xiao et&#xa0;al. (2023)</xref> also suggested that high habitat heterogeneity of rocks increased shrub richness. In the MTSF community, tall deciduous trees gradually closed the canopy, limiting the understory light conditions (<xref ref-type="bibr" rid="B30">Li et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B32">Lu et&#xa0;al., 2016</xref>). Those heliophilous shrub species can not adapt to such poor light conditions and are excluded, thus exhibiting decreased species richness. However, the occurrence of tall deciduous trees facilitates the decomposition of fallen leaves and litter and promotes soil function recovery (<xref ref-type="bibr" rid="B71">Zeng et&#xa0;al., 2020</xref>). As a result, the immigration of shade-tolerant tree species, such as <italic>Machilus nanmu</italic>, <italic>Quercus glauca</italic>, and <italic>Cornus kousa</italic>, is promoted, leading to a higher species richness relative to CBMF. Like CF, CBMF was strongly dominated by extremely few species, such as <italic>P. massoniana</italic> and <italic>L. formosana</italic>. Such a monodominant community often leads to higher dominance and lower evenness. Consistent with the results of <xref ref-type="bibr" rid="B75">Zhang et&#xa0;al. (2022a)</xref> that <italic>P. massoniana &#x2013; L. formosana</italic> mixed forest has higher species richness than CF, this study also showed a similar trend after controlling the sample size. The main reason is that adding broadleaf trees can increase the number of plant species and provide different types of litter for forest soil, thereby improving the physical and chemical properties of the soil (<xref ref-type="bibr" rid="B75">Zhang et&#xa0;al., 2022a</xref>). Moreover, adding broadleaf tree species also changes the resource acquisition strategies of the plants. <xref ref-type="bibr" rid="B47">Qin and Shangguan (2019)</xref> reported that compared with <italic>P. massoniana</italic> plantations, <italic>P. massoniana &#x2013; L. formosana</italic> mixed forests show the most significant increase in leaf nutrient content and the best resource acquisition strategy to adapt to different environmental conditions.</p>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>Community assembly among vegetation types</title>
<p>The stochastic spread of species mainly depends on the difference between local species richness and diversity and the degree of diffusion restrictions. As a neutral-based process model, NCM is a valid approach for inferring stochastic processes acting on community assembly (<xref ref-type="bibr" rid="B9">Chen et&#xa0;al., 2019</xref>). This study used neutral models to simulate different vegetation types and found that both CF and BF communities were primarily governed by neutral processes, with CF being more strongly influenced by neutrality (R<sup>2&#xa0;</sup>=&#xa0;0.68, explained by NCM), indicating that stochastic processes dominate the community assembly of CF (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>). The main reason is that in the CF community, <italic>P. kwangtungensis</italic> occupies an absolutely dominant position, with no obvious co-occurring species and relatively high rarity of other species (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>; <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S1</bold>
</xref>). In contrast, the species are more susceptible to stochastic processes due to their small population size, high migration rate, and limited geographical range (<xref ref-type="bibr" rid="B65">Xu et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B74">Zhang et&#xa0;al., 2022c</xref>). Additionally, the <italic>P. kwangtungensis</italic> population is large as it is adapted to high altitudes with low survival pressure. Coniferous trees often have allelopathic effects that inhibit the occurrence of other species and compress the ecological niche of other species within the community (<xref ref-type="bibr" rid="B13">Ehlers et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B63">Wang and Cui, 2023</xref>), resulting in strong randomness in species occurrence and stochastic processes dominating the community.</p>
<p>As the typical climax community in this landscape, BF communities have higher species richness and diversity than CF (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). Rare species are fewer within the communities, and the species distribution is relatively uniform. Therefore, the R<sup>2</sup> value of the NCM is slightly lower than that of CF (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5C, E</bold>
</xref>). However, according to the calculated Nm values, species dispersal between plots in BF is higher than that in CF, indicating species dispersal as one of the important mechanisms of species coexistence in BF communities. Contradicting the findings of this research, however, <xref ref-type="bibr" rid="B56">Su et&#xa0;al. (2023)</xref> found that humidity and soil significantly impact species composition in karst BFs, indicating the effects of environmental filtering on ecological processes in the community. The reason may be that in the current study, dominant species in the karst BF community have adapted to the moisture stress and regulated their water use strategies by root plasticity and leaf shedding, adapting to the severe karstic habitat (<xref ref-type="bibr" rid="B12">Ding et&#xa0;al., 2023</xref>).</p>
<p>Previous studies suggested that secondary forests driven by deterministic processes could recover their community structure to the state before disturbance (<xref ref-type="bibr" rid="B16">Finegan, 1996</xref>; <xref ref-type="bibr" rid="B28">Letcher and Chazdon, 2009</xref>; <xref ref-type="bibr" rid="B42">Norden et&#xa0;al., 2009</xref>). In this study, the dominant ecological process in SL, MTSF, and CBMF tends to be the niche process, indicating that deterministic processes dominate the community assembly of these forests, which was consistent with the studies of tropical secondary forests by <xref ref-type="bibr" rid="B42">Norden et&#xa0;al. (2009)</xref>, <xref ref-type="bibr" rid="B4">Cequinel et&#xa0;al. (2018)</xref> and others, where deterministic processes drove the composition of forest species. Previous studies have also reported that the colonization and extinction processes in forest communities are primarily determined by environmental heterogeneity and species competition (<xref ref-type="bibr" rid="B22">He et&#xa0;al., 2022</xref>). SL, MTSF, and CBMF are karstic secondary forest communities. The biological and non-biological filtering frameworks may be important in its ecological process (<xref ref-type="bibr" rid="B40">M&#xfc;nkem&#xfc;ller et&#xa0;al., 2020</xref>).</p>
<p>Despite the abundant rainfall in the karst landscape with a subtropical monsoon climate, the aboveground and underground dual-structure hydrological system often causes severe precipitation leakage, resulting in severe surface drought and frequent temporary droughts (<xref ref-type="bibr" rid="B12">Ding et&#xa0;al., 2023</xref>). Moreover, the karst surface is steep and irregular, with low and discontinuous soil coverage (<xref ref-type="bibr" rid="B45">Qi et&#xa0;al., 2021</xref>). <xref ref-type="bibr" rid="B6">Chase (2007)</xref> found that the community species composition similarities increased after drought treatment, possibly due to the strong drought-induced environmental filtering that filters out species with weak competitiveness and increases species similarity between communities. Therefore, environmental filtering may affect the construction of secondary forest communities. Among the three secondary forest communities, SL has the lowest R<sup>2</sup> (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>), mainly because environmental filtering often has a smaller impact on larger species (<xref ref-type="bibr" rid="B27">Kristiansen et&#xa0;al., 2012</xref>). The SL communities are mostly dominated by small shrubs with a higher resource utilization efficiency than large trees and, therefore, a tendency to receive the most effects of ecological niche processes. As the typical dominant community in the karst landscapes, BF has high species diversities. Although CF communities&#x2019; species diversity is lower than BF communities, they are both dominant communities with stable community structures in karst areas. Thus, it can be indirectly inferred that the different developmental stages of karst communities may be governed by different community assembly mechanisms.</p>
</sec>
</sec>
<sec id="s5" sec-type="conclusions">
<label>5</label>
<title>Conclusion</title>
<p>By quantifying the species diversity patterns and community assembly mechanisms among five vegetation types in the Maolan karst area, we found that the CF community had lower species evenness and richness, while the BF community had higher species richness. However, after controlling the sample size, a significant rarefied species richness trend of BF &gt; SL &gt; MTSF &gt; CBMF &gt; CF was found, which emphasized the importance of considering the confusing impacts of abundance. In addition, stochastic processes drove the community assembly of CF and BF, particularly species dispersal or formation, the climax communities in the karst landscape, while deterministic processes determined the community assembly of secondary communities such as SL, MTSF, or CBMF. At local scales, the difference among vegetation types was manifested in the potential community assembly rules in addition to the diversity patterns and community structure. Besides aboveground biomass and diversity, attention should also be directed to sorting ecological processes in regional forest ecology and management.</p>
<p>Our study provided clear evidence that the seeming different BF and CF were dominated by stochastic process, which emphasized the totally difference between climax communities and other communities. These findings improve understanding of species diversity patterns and community assembly rules in the karst landscape. However, we only examined the biodiversity patterns and community assembly rules at a given plot scale. Further study might benefit from performing relative study across spatial scales. In addition, further research also should consider more important explanatory deterministic factors and their relative importance such as unmeasured environmental conditions and species interactions. Furthermore, a focus should be placed on comparing the contributions of subterranean microorganisms in climax communities and other communities to the species diversity pattern and community assembly of above-ground vegetations communities.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>LM: Conceptualization, Methodology, Visualization, Writing &#x2013; original draft. LZ: Funding acquisition, Methodology, Project administration, Supervision, Writing &#x2013; review &amp; editing. YL: Investigation, Writing &#x2013; review &amp; editing. LC: Investigation, Writing &#x2013; review &amp; editing. MS: Project administration, Supervision, Writing &#x2013; review &amp; editing. GZ: Project administration, Supervision, Writing &#x2013; review &amp; editing. QL: Project administration, Supervision, Writing &#x2013; review &amp; editing. DC: Project administration, Supervision, Writing &#x2013; review &amp; editing. YW: Investigation, Writing &#x2013; review &amp; editing. ZY: Investigation, Writing &#x2013; review &amp; editing. SC: Investigation, Writing &#x2013; review &amp; editing. RY: Resources, Writing &#x2013; review &amp; editing.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This work was supported by the Basic Research Program in Guizhou Province (Foundation-ZK [2021] General 094, ZK [2022] General 098, ZK [2022] General 036, ZK [2022] General 079), the Guizhou Provincial Key Technology R&amp;D Program (General [2023]111) and the National Natural Science Fund (32360380, 32360278) and the Guizhou University Talent Introduction project ([2019]45).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We would like to express our gratitude to the students and teachers of the karst restoration ecosystem for their contribution to establishing these FDPs, as well as Jiawei Mo and Huiyuan Qin from Maolan National Nature Reserve of Guizhou Province for their invaluable assistance during our fieldwork. We thank Essentialslink Language Services (<ext-link ext-link-type="uri" xlink:href="http://www.essentialslink.cn">www.essentialslink.cn</ext-link>) for its linguistic assistance during the preparation of this manuscript. Lastly, we extend our appreciation to the reviewers for providing valuable feedback on the manuscript.</p>
</ack>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fpls.2024.1338596/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fpls.2024.1338596/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Table_1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document"/>
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