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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2023.1120583</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Crop root system plasticity for improved yields in saline soils</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Shelden</surname>
<given-names>Megan C.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/47813"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Munns</surname>
<given-names>Rana</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2165643"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>School of Agriculture, Food and Wine, University of Adelaide</institution>, <addr-line>Urrbrae, SA</addr-line>, <country>Australia</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Australian Research Council (ARC) Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, University of Western Australia</institution>, <addr-line>Crawley, WA</addr-line>, <country>Australia</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Saoirse Tracy, University College Dublin, Ireland</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Nadia Bazihizina, University of Florence, Italy; Honghong Wu, Huazhong Agricultural University, China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Megan C. Shelden, <email xlink:href="mailto:megan.shelden@adelaide.edu.au">megan.shelden@adelaide.edu.au</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Crop and Product Physiology, a section of the journal Frontiers in Plant Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>24</day>
<month>02</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1120583</elocation-id>
<history>
<date date-type="received">
<day>10</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>06</day>
<month>02</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Shelden and Munns</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Shelden and Munns</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Crop yields must increase to meet the demands of a growing world population. Soil salinization is increasing due to the impacts of climate change, reducing the area of arable land for crop production. Plant root systems are plastic, and their architecture can be modulated to (1) acquire nutrients and water for growth, and (2) respond to hostile soil environments. Saline soils inhibit primary root growth and alter root system architecture (RSA) of crop plants. In this review, we explore how crop root systems respond and adapt to salinity, focusing predominately on the staple cereal crops wheat, maize, rice, and barley, that all play a major role in global food security. Cereal crops are classified as glycophytes (salt-sensitive) however salt-tolerance can differ both between species and within a species. In the past, due to the inherent difficulties associated with visualising and measuring root traits, crop breeding strategies have tended to focus on optimising shoot traits. High-resolution phenotyping techniques now make it possible to visualise and measure root traits in soil systems. A <italic>steep, deep and cheap</italic> root ideotype has been proposed for water and nitrogen capture. Changes in RSA can be an adaptive strategy to avoid saline soils whilst optimising nutrient and water acquisition. In this review we propose a new model for designing crops with a salt-tolerant root ideotype. The proposed root ideotype would exhibit root plasticity to adapt to saline soils, root anatomical changes to conserve energy and restrict sodium (Na<sup>+</sup>) uptake, and transport mechanisms to reduce the amount of Na<sup>+</sup> transported to leaves. In the future, combining high-resolution root phenotyping with advances in crop genetics will allow us to uncover root traits in complex crop species such as wheat, that can be incorporated into crop breeding programs for yield stability in saline soils.</p>
</abstract>
<kwd-group>
<kwd>salinity</kwd>
<kwd>root elongation</kwd>
<kwd>root system architecture</kwd>
<kwd>abiotic stress</kwd>
<kwd>wheat</kwd>
<kwd>barley</kwd>
<kwd>rice</kwd>
<kwd>crops</kwd>
</kwd-group>
<counts>
<fig-count count="3"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="132"/>
<page-count count="14"/>
<word-count count="8387"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Increasing soil salinization decreases plant growth and impacts crop productivity world-wide. Of particular concern is the salinization of irrigated land, as this provides nearly half of the world&#x2019;s food (<xref ref-type="bibr" rid="B30">Hopmans et&#xa0;al., 2021</xref>). An increase in the global demand for food for a growing population means that crops will increasingly be grown on salt-affected soils. Saline soils are defined as having an electrical conductivity (EC) greater than 4 dS m<sup>-1</sup> (40 mM NaCl), which can lead to a reduction in crop growth of 15 &#x2013; 20% (<xref ref-type="bibr" rid="B70">Munns and Tester, 2008</xref>). However, saline soils can be much higher than this; salt distribution in soils is never uniform across an area and will vary with depth making it difficult to precisely calculate crop yield losses (<xref ref-type="bibr" rid="B65">Munns et&#xa0;al., 2020a</xref>). Glycophytes are salt sensitive species, tolerating only low concentrations of salt and include our most staple food crops (ie. wheat, maize, rice and barley). Halophytes are highly salt tolerant, growing in NaCl concentrations up to 500 mM. Compared with glycophytic plants they can accumulate high concentrations of salt (Na<sup>+</sup> and Cl<sup>-</sup>) in their leaf tissues to balance water relations (<xref ref-type="bibr" rid="B14">Colmer et&#xa0;al., 2006</xref>). Salt tolerance varies in glycophytic species, with barley and wheat moderately salt-tolerant compared to both Arabidopsis and rice (<xref ref-type="bibr" rid="B70">Munns and Tester, 2008</xref>). Salt tolerance can also vary within a species.</p>
<p>In terms of global food production, the cereal crops wheat (<italic>Triticum</italic> sp. L.), maize (<italic>Zea mays</italic> L.), rice (<italic>Oryza sativa</italic> L.) and barley (<italic>Hordeum vulgare</italic> L.) are the four most important crops. Wheat, grown in temperate regions, is the largest food crop in the world, providing approximately 20% of human calories and protein (<xref ref-type="bibr" rid="B103">Tadesse et&#xa0;al., 2019</xref>). Maize is grown predominantly in the Americas for grain, fodder, and as raw materials for industry (production of biofuels) (<xref ref-type="bibr" rid="B98">Shiferaw et&#xa0;al., 2011</xref>). Rice is a dietary staple for more than half of the world&#x2019;s population. The Global Rice Science Partnership is predicting a 26% increase in rice production will be required in the next 25 years to meet global food demands (<xref ref-type="bibr" rid="B123">Zeigler and Dobermann, 2011</xref>). Together rice, wheat, and maize account for more than 50% human calorific consumption (<xref ref-type="bibr" rid="B16">FAO, 2022</xref>) and this is closer to 60% for developed countries (<xref ref-type="bibr" rid="B5">Awika, 2011</xref>). Barley is the fourth most important crop and is primarily grown for malting and livestock feed. It is the most salt-tolerant species out of the cereal crops, followed by wheat (moderately-tolerant), maize (moderately-sensitive) and rice (sensitive) (<xref ref-type="bibr" rid="B70">Munns and Tester, 2008</xref>), and is therefore an excellent model species for studying salt-tolerance mechanisms in crop plants.</p>
<p>Climate change is likely to accelerate soil salinization, because of the increased crop water requirements by elevated temperatures, through sea level rise, and the reduction in freshwater available for irrigation (<xref ref-type="bibr" rid="B30">Hopmans et&#xa0;al., 2021</xref>). The global impact of the changing climate is seen in interactions and feedbacks between climate, land degradation and food security. A significant increase in productivity of all cereal crops on salinized land is needed.</p>
<p>Plant roots have a pivotal role in providing anchorage, as well as the uptake of water and nutrients from the soil, for the maintenance of plant growth. The roots adapt to changes in the environment and soil conditions through many mechanisms, including the activity of membrane transporters that control the uptake of ions and water from the soil, their transport through the roots, and the loading into the xylem (<xref ref-type="bibr" rid="B88">Schroeder et&#xa0;al., 2013</xref>). In response to saline soils, the roots must exclude nearly all the salt from the soil solution (97 - 98%) whilst continuing to take up water by transpiration (<xref ref-type="bibr" rid="B68">Munns et&#xa0;al., 2020b</xref>). Plants exhibit root plasticity and can modulate their root system architecture (RSA) in response to their environment including hostile soils ie. drought, salt, flooding and extreme temperatures (<xref ref-type="bibr" rid="B38">Karlova et&#xa0;al., 2021</xref>). RSA also responds to soil nutrient deficiencies including nitrogen (N) and phosphorous (P) (<xref ref-type="bibr" rid="B57">Lynch, 2019</xref>). The <italic>steep, cheap and deep</italic> root ideotype, consists of physiological, anatomical and architecture traits for improved N acquisition in maize (<xref ref-type="bibr" rid="B57">Lynch, 2019</xref>).</p>
<p>Root traits have been studied less than shoot traits, mainly due to the inherent difficulties of imaging and quantifying root growth in soils. Modern root phenotyping technology has led to significant advancements in selecting root traits for improved crop productivity with promising root traits selected for abiotic stress tolerance incorporated into new germplasm for breeders. These include narrow xylem vessels to conserve water, shallow roots for surface P uptake, and longer roots for deep water capture (<xref ref-type="bibr" rid="B106">Tracy et&#xa0;al., 2020</xref>). Soil-surface roots (SOR) may also be beneficial for waterlogging tolerance in upland species such as rice to avoid hypoxic conditions (<xref ref-type="bibr" rid="B27">Hanzawa et&#xa0;al., 2013</xref>). Complex traits such as salinity tolerance are multigenic, therefore it is difficult to identify candidate genes for incorporation into breeding programs. Exploiting natural genetic diversity within a crop species by screening varieties, wild genotypes and landraces will be key for breeding more salt tolerant crops in the future (<xref ref-type="bibr" rid="B93">Shelden and Roessner, 2013</xref>). Genes for exclusion of Na<sup>+</sup> from the xylem stream flowing to leaves in saline soil have been transferred into roots of modern wheat (<xref ref-type="bibr" rid="B67">Munns et&#xa0;al., 2012</xref>), but no specific trait for RSA that enhance salt-tolerance have been reported.</p>
<p>In this review we highlight the mechanisms that control crop root growth and development in response to salinity. We explore how this knowledge can be used to improve root system architecture for crop growth and yield in saline conditions. With significant gains in high resolution spatial profiling technologies and phenotyping, these tools can be used to understand salt-tolerance mechanisms from the individual cell to the whole plant system. The discovery of traits for root system adaptation to salinity stress will provide an under-utilised trait for breeders to develop more salt-tolerant crops.</p>
</sec>
<sec id="s2">
<label>2</label>
<title>Structure of crop root systems</title>
<p>Cereal crops are monocots, and their root structure comprises both embryonic (primary and seminal) and post-embryonic (brace, nodal and lateral) roots (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Monocots and dicots are characterised by different root structures, with dicots having an embryonic primary root (PR), lateral roots (LR) and adventitious roots (AR) (<xref ref-type="bibr" rid="B99">Smith and De Smet, 2012</xref>). Monocots have a fibrous root system and shoot borne roots that overtake the embryonic PR and LR and are mostly responsible for water and nutrient uptake. Barley, wheat, and maize have a variable number of seminal roots (including the primary root), with up to seven in some barley cultivars (<xref ref-type="bibr" rid="B8">Bengough et&#xa0;al., 2004</xref>), however this number can vary within species, and can also be affected by abiotic stresses. In contrast, the rice root system is comprised of a single embryonic seminal root, crown, and lateral roots. In maize and sorghum, below-borne roots are often referred to as crown roots and above ground brace (or prop) roots (<xref ref-type="bibr" rid="B29">Hochholdinger et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B60">Maqbool et&#xa0;al., 2022</xref>). In other cereals such as barley and wheat the shoot-borne roots are referred to as nodal roots. In cereals, the seminal root system is only active early in the growing period (up to the 4-leaf stage in barley and wheat).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Schematic drawing of the components of a cereal (monocotyledon) root system. Cereal crops have a fibrous root system with primary and seminal embryonic roots (numbers can differ between species), lateral roots (also known as branch roots), and nodal roots.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-14-1120583-g001.tif"/>
</fig>
<p>Root hairs are specialised tubular structures that arise from epidermal cells. They are crucial for nutrient and water capture as they extend into the soil and increase the root surface area. The growth and development of root hairs are modulated by environmental signals, ensuring optimal acquisition of nutrients. The availability of less mobile nutrients such as inorganic P (Pi), iron (Fe), zinc (Zn) and magnesium (Mg) can all affect root hair morphogenesis (<xref ref-type="bibr" rid="B58">Lynch et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B87">Salazar-Henao et&#xa0;al., 2016</xref>). Root hairs are also important for the development and stabilization of the rhizosphere (<xref ref-type="bibr" rid="B62">McCully, 1999</xref>), and they can enhance penetration of high-strength soils (<xref ref-type="bibr" rid="B25">Haling et&#xa0;al., 2013</xref>). Root hair growth and development can also be affected by abiotic stresses, with saline soils shown to decrease both root hair length and density (<xref ref-type="bibr" rid="B111">Wang et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B85">Robin et&#xa0;al., 2016</xref>). In barley, root hairs also have been shown to contribute to drought tolerance and improved yield stability (<xref ref-type="bibr" rid="B61">Marin et&#xa0;al., 2020</xref>). Root hairs form part of the rhizosheath, along with soil particles bound to root hairs, mucilage and the root microbiome (<xref ref-type="bibr" rid="B62">McCully, 1999</xref>). Salt stress can influence the constitution of soil bacterial communities (<xref ref-type="bibr" rid="B79">Rath et&#xa0;al., 2019</xref>). Understanding the impact of saline soils on root-associated microbial communities will be important in generating crops with root systems adapted to salinity (<xref ref-type="bibr" rid="B76">Qin et&#xa0;al., 2016</xref>).</p>
</sec>
<sec id="s3">
<label>3</label>
<title>Primary and seminal root growth inhibition in response to salinity</title>
<p>Salinity inhibits root system growth less than shoot growth, and the root:shoot biomass ratio increases in most species including sorghum (<xref ref-type="bibr" rid="B113">Weimberg et&#xa0;al., 1984</xref>), wheat (<xref ref-type="bibr" rid="B31">Husain et&#xa0;al., 2004</xref>), and rice (<xref ref-type="bibr" rid="B51">Lin and Kao, 1996</xref>). At low salinity, root system growth may not decrease at all while shoot growth declines as in barley and sorghum, or it may even increase as in bermudagrass and Cynodon turf grass (reviewed by <xref ref-type="bibr" rid="B69">Munns and Termaat (1986)</xref>). This may be due to stimulation of the rate of individual root elongation, as reported for cotton (<italic>Gossypium hirsutum</italic> L.) plants in saline solution by <xref ref-type="bibr" rid="B45">Kurth et&#xa0;al. (1986)</xref>. In both barley and wheat, genetic variation has been observed in the primary root response to salinity (<xref ref-type="bibr" rid="B78">Rahnama et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B94">Shelden et&#xa0;al., 2013</xref>).</p>
<p>Elongation rate of the primary root was reduced by salinity up to 150 mM NaCl in <italic>Arabidopsis</italic> (<xref ref-type="bibr" rid="B116">Wu et&#xa0;al., 1996</xref>), barley (<xref ref-type="bibr" rid="B94">Shelden et&#xa0;al., 2013</xref>), wheat (<xref ref-type="bibr" rid="B78">Rahnama et&#xa0;al., 2011</xref>) and maize (<xref ref-type="bibr" rid="B9">Bernstein and Kafkafi, 2002</xref>). However, in cotton seedlings, the growth of the primary root was enhanced by moderate salinities (25 to 100 mM NaCl), and the cortical cells were longer than in control plants (<xref ref-type="bibr" rid="B127">Zhong and Lauchli, 1993</xref>). This increase occurred only when the Ca<sup>2+</sup> concentration in the solution was supplied at 10 mM Ca<sup>2+</sup> (<xref ref-type="bibr" rid="B127">Zhong and Lauchli, 1993</xref>). The rate of cell production in the presence of 10 mM Ca<sup>2+</sup> was not affected by salinities up to 150 mM NaCl (<xref ref-type="bibr" rid="B45">Kurth et&#xa0;al., 1986</xref>). These findings reinforce the importance of having sufficient Ca(NO<sub>3</sub>)<sub>2</sub> in the medium to prevent the Ca<sup>2+</sup> activity falling in the presence of NaCl. The addition of NaCl or any electrolyte decreases the activity (the concentration of the free Ca<sup>2+</sup> ion). For instance, addition of 150 mM NaCl to a solution containing 2 mM Ca(NO<sub>3</sub>)<sub>2</sub> (i.e. half-strength Hoagland solution) decreases the activity of free Ca<sup>2+</sup> to 0.64 mM (<xref ref-type="bibr" rid="B31">Husain et&#xa0;al., 2004</xref>). Raising the Ca<sup>2+</sup> activity from 0.64 to 3.15 mM by increasing the Ca(NO<sub>3</sub>)<sub>2</sub> from 2 to 10 mM in the presence of 150 mM NaCl resulted in a 50% increase in root system biomass in wheat (<xref ref-type="bibr" rid="B31">Husain et&#xa0;al., 2004</xref>). Calcium is an essential nutrient. It is a constituent of cell walls and affects many membrane functions including membrane permeability to cations such as Na<sup>+</sup> (<xref ref-type="bibr" rid="B115">White and Broadley, 2003</xref>). The Ca<sup>2+</sup> activity should be close to 1 mM (<xref ref-type="bibr" rid="B22">Genc et&#xa0;al., 2010</xref>). The Ca<sup>2+</sup> concentration in irrigation water and groundwater of saline soils is higher than this (<xref ref-type="bibr" rid="B80">Rengasamy, 2010</xref>); salt treatments in laboratory experiments should replicate the natural environment when possible.</p>
<sec id="s3_1">
<label>3.1</label>
<title>Root growing zone &#x2013; cell division versus cell elongation</title>
<p>Root growth is limited to a small region of the root tip comprising the root apical meristem, cell division zone and elongation zone (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). In barley and rye (<italic>Secale cereale</italic> L.), the meristematic zone extends to about 1&#xa0;mm from the tip, and the elongating zone another 2&#xa0;mm from the tip (<xref ref-type="bibr" rid="B74">Ogawa et&#xa0;al., 2006</xref>, <xref ref-type="bibr" rid="B91">Shelden et&#xa0;al., 2016</xref>). In rye, moderate salt stress up to 100 mM NaCl did not inhibit cell division nor the elongation rate of the root (note that Ca(NO<sub>3</sub>)<sub>2</sub> was supplied at 4 mM which would be sufficient to maintain the Ca<sup>2+</sup> activity above 1 mM), but at 250 mM NaCl cell division ceased (<xref ref-type="bibr" rid="B74">Ogawa et&#xa0;al., 2006</xref>). In barley cv. Clipper the length of the cell division zone was unaffected by salt, however the elongation zone was shorter accounting for a reduced elongation rate (<xref ref-type="bibr" rid="B91">Shelden et&#xa0;al., 2016</xref>). In contrast, in the barley landrace Sahara 3771, cell division was inhibited and was primarily responsible for the reduction in root elongation rate (<xref ref-type="bibr" rid="B91">Shelden et&#xa0;al., 2016</xref>). In Arabidopsis, salinity results in an inhibition of cell production, cell cycle progression and a reduction in meristem size (<xref ref-type="bibr" rid="B114">West et&#xa0;al., 2004</xref>). Kinematic analysis revealed that the growth reduction of the stressed roots (83 mM NaCl) was due to a decrease in cell production and a smaller mature cell length. The average cell cycle duration was not affected (<xref ref-type="bibr" rid="B114">West et&#xa0;al., 2004</xref>). In cotton and maize, the length of the growing zones is intrinsically longer, up to 10&#xa0;mm from the tip (<xref ref-type="bibr" rid="B127">Zhong and Lauchli, 1993</xref> for cotton) (<xref ref-type="bibr" rid="B86">Rodriguez et&#xa0;al., 1997</xref> for maize). Kinematic analysis showed that the decrease in root growth is due to an inhibition of both cell division and elongation (<xref ref-type="bibr" rid="B127">Zhong and Lauchli, 1993</xref>; <xref ref-type="bibr" rid="B9">Bernstein and Kafkafi, 2002</xref>). The length of the elongation zone is shortened in response to salinity in maize (<xref ref-type="bibr" rid="B131">Zidan et&#xa0;al., 1990</xref>), cotton (<xref ref-type="bibr" rid="B127">Zhong and Lauchli, 1993</xref>), barley (<xref ref-type="bibr" rid="B91">Shelden et&#xa0;al., 2016</xref>) and sorghum (<italic>Sorghum bicolor</italic> L.) (<xref ref-type="bibr" rid="B43">Koyro, 1997</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Longitudinal view of root tip showing the zones of cell division (the meristem), elongation, and maturation. Cell division defines the apical meristem. Root hairs begin to develop in the maturation zone. Adapted from &#x201c;Root Meristem Anatomy&#x201d; by <uri xlink:href="https://www.biorender.com">BioRender.com</uri> (2022). Retrieved from <uri xlink:href="https://app.biorender.com/biorender-templates">https://app.biorender.com/biorender-templates</uri>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-14-1120583-g002.tif"/>
</fig>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Osmotic and ionic stress</title>
<p>The ionic (salt-specific) effect of external concentrations of Na<sup>+</sup> and Cl<sup>-</sup> on root growth is considered secondary in time to the initial osmotic effect of salinity, which cause the same rapid decrease in root growth as do non-ionic osmotica such as mannitol and polyethylene glycol. That is, the initial effects are from the salt outside the roots, not on the inside (<xref ref-type="bibr" rid="B64">Munns, 2002</xref>). High concentrations of Na<sup>+</sup> and Cl<sup>-</sup> ions in the soil make it more &#x2018;difficult&#x2019; (that is, require more energy) for roots to extract water, resulting in an &#x2018;osmotic stress&#x2019; similar to that occurring with water deficit (<xref ref-type="bibr" rid="B86">Rodriguez et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B120">Yamaguchi and Sharp, 2010</xref>).</p>
<p>In barley, root elongation rate decreased within hours of exposure to NaCl, suggesting that the initial effect of NaCl on the root is due to an osmotic stress (<xref ref-type="bibr" rid="B94">Shelden et&#xa0;al., 2013</xref>). After three days growth on 150 mM NaCl, root and shoot Na<sup>+</sup> concentrations increased up to 17-fold compared to control conditions and the K<sup>+</sup>/Na<sup>+</sup> ratio significantly decreased. However, root (and shoot) ion concentrations did not correlate with root elongation rates, showing that the Na<sup>+</sup> and K<sup>+</sup> concentrations in the mature zones of roots were not influencing root growth, at least during the early phase of salt stress (<xref ref-type="bibr" rid="B94">Shelden et&#xa0;al., 2013</xref>). In maize plants treated with high concentrations of NaCl in a single step &#x2018;shock&#x2019; treatment, there was a rapid decrease in root growth, however this was not seen in a salt acclimation treatment when the NaCl was increased incrementally (<xref ref-type="bibr" rid="B86">Rodriguez et&#xa0;al., 1997</xref>), also suggesting osmotic stress is important. A link between root growth and root ion content was also reported in tomato (<italic>Solanum lycopersicum L.</italic>); the most salt-sensitive genotypes (with respect to root growth) had the highest root Na<sup>+</sup> content and lowest K<sup>+</sup>/Na<sup>+</sup> ratio (<xref ref-type="bibr" rid="B20">Gandullo et&#xa0;al., 2021</xref>). This contrasts with barley, where no correlation between root growth and K<sup>+</sup>/Na<sup>+</sup> ratio was observed (<xref ref-type="bibr" rid="B94">Shelden et&#xa0;al., 2013</xref>).</p>
<p>Ion concentrations in plants subject to salinity stress have routinely been measured in whole plant tissues (roots, leaves, and even whole shoots). To understand the direct impact of cellular Na<sup>+</sup> concentration on root cell division and elongation, high resolution spatial profiling of root ion concentrations is needed, as done using quantitative cryo-analytical scanning electron microscopy with X-ray microanalysis in wheat roots (<xref ref-type="bibr" rid="B46">Lauchli et&#xa0;al., 2008</xref>) and in barley roots (<xref ref-type="bibr" rid="B42">Kotula et&#xa0;al., 2015</xref>). Differences in cellular root Na<sup>+</sup> were reported in aerated saline conditions in barley at 10&#xa0;mm and 50&#xa0;mm behind the root apex (<xref ref-type="bibr" rid="B42">Kotula et&#xa0;al., 2015</xref>). Closer to the root tip, Na<sup>+</sup> was higher in the outer tissues (epidermis, outer cortex) and lower in the inner cells and xylem vessels. In contrast, at 50&#xa0;mm from the apex, Na<sup>+</sup> and Cl<sup>-</sup> were high in the pericycle and lower in the outer tissues.</p>
<p>The fluorescent dye CoroNa green has been used to determine intracellular cytosol and vacuolar Na<sup>+</sup> however as the dye is non-ratio metric measurements cannot by quantified (<xref ref-type="bibr" rid="B75">Park et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B119">Wu et&#xa0;al., 2015</xref>). In barley, laser ablation inductively coupled proton mass spectrometry (LA-ICP-MS) was used to show that Na<sup>+</sup> concentrations in the root meristem and elongation zone remained relatively low when plants were exposed to salt stress (<xref ref-type="bibr" rid="B92">Shelden et&#xa0;al., 2020</xref>). This indicated that in the moderately salt-tolerant crop barley, internal cellular concentrations of Na<sup>+</sup> in the meristem do not directly inhibit cell division; instead, as in water stress, cell division may be regulated by a process involving abscisic acid and the properties of the expanding primary cell wall (<xref ref-type="bibr" rid="B120">Yamaguchi and Sharp, 2010</xref>). A number of studies have shown the ability of glycophytes to exclude Na<sup>+</sup>, but not Cl<sup>-</sup>, from the root meristem including in maize (<xref ref-type="bibr" rid="B86">Rodriguez et&#xa0;al., 1997</xref>).</p>
<p>Na<sup>+</sup> and Cl<sup>-</sup> is taken up from the soil into the epidermis, transported across the root and loaded into the xylem <italic>via</italic> membrane transporters. The active removal of Na<sup>+</sup> and Cl<sup>-</sup> from the cytoplasm into the vacuoles allows cells and tissues to tolerate higher internal concentrations of Na<sup>+</sup> (tissue tolerance). In most higher plants including crop species, Na<sup>+</sup> appears to reach toxic concentrations before Cl<sup>-</sup> and therefore is thought to be more damaging to the plant (<xref ref-type="bibr" rid="B70">Munns and Tester, 2008</xref>). In some species such as citrus (<italic>Citrus</italic> sp.) and grapevine (<italic>Vitis vinifera</italic> L<italic>.)</italic>, Cl<sup>-</sup> concentrations in the leaf blades rise faster than Na<sup>+</sup> (Na<sup>+</sup> is retained in stems and petioles) and so Cl<sup>-</sup> is considered as the more toxic ion (<xref ref-type="bibr" rid="B100">Storey and Walker, 1998</xref>; <xref ref-type="bibr" rid="B129">Zhou-Tsang et&#xa0;al., 2021</xref>). Loading of Cl<sup>-</sup> into the vacuole of root cortical cells plays a role in Cl<sup>-</sup> exclusion from the shoots (<xref ref-type="bibr" rid="B104">Teakle and Tyerman, 2010</xref>). Salt-treatment of plants also affects the cellular concentrations of other ions. The uptake of potassium (K<sup>+</sup>) is reduced which has potentially negative effects on cellular metabolism and signalling (<xref ref-type="bibr" rid="B118">Wu et&#xa0;al., 2018b</xref>).</p>
<p>In durum wheat grown at 50 mM NaCl, X-ray microanalysis of mature roots showed that the Na<sup>+</sup> concentration declined across the cortex, being highest in the epidermal and subepidermal cells (48 mM) and lowest in the inner cortical cells (22 mM) (<xref ref-type="bibr" rid="B46">Lauchli et&#xa0;al., 2008</xref>). Na<sup>+</sup> was high in the pericycle (85 or 150 mM, depending on genotype) and low in the xylem parenchyma (34 mM). The K<sup>+</sup> profiles were generally inverse to those of Na<sup>+</sup>. Chloride was only detected in the epidermis. These data suggest that the epidermal and cortical cells removed most of the Na<sup>+</sup> and Cl<sup>-</sup> from the transpiration stream before it reached the endodermis, and that the endodermis is not the control point for salt uptake by the plant. The pericycle as well as the xylem parenchyma may be important in the control of net Na<sup>+</sup> loading of the xylem, their vacuoles acting as sites for storage.</p>
<p>Osmotic adjustment is an essential adaptation to saline soil. Plants growing in saline soils regulate the uptake of Na<sup>+</sup> and Cl<sup>-</sup> to avoid ion toxicity, while ensuring sufficient solutes for osmotic adjustment. Root cells accumulate sufficient solutes to match, in osmolarity, the increased ion concentrations in the soil solution. This &#x2018;osmotic adjustment&#x2019; maintains cell turgor and the volume of organelles within the cells of the growing plant. Taking up just 2% of the NaCl allows a plant to osmotically adjust the Na<sup>+</sup> and Cl<sup>&#x2013;</sup> in vacuoles, while organic solutes provide the balancing osmotic pressure in the cytoplasm (<xref ref-type="bibr" rid="B68">Munns et&#xa0;al., 2020b</xref>). Osmotic adjustment through the synthesis of compatible solutes in roots has been observed in maize (<xref ref-type="bibr" rid="B86">Rodriguez et&#xa0;al., 1997</xref>) and barley (<xref ref-type="bibr" rid="B91">Shelden et&#xa0;al., 2016</xref>). The maintenance of cell division and root elongation in barley in response to salt stress, was linked to the synthesis of compatible solutes for osmotic adjustment and restoration of cell turgor (<xref ref-type="bibr" rid="B91">Shelden et&#xa0;al., 2016</xref>).</p>
</sec>
</sec>
<sec id="s4">
<label>4</label>
<title>Plant roots sense changes in osmolarity and sodium</title>
<p>How plant roots &#x201c;sense&#x201d; Na<sup>+</sup> in the soil and initiate the salt-specific response is still unknown. In animals, distinct protein receptors have been shown to be involved in sensing salt, with several ion channels found to act as salt sensing taste receptors (<xref ref-type="bibr" rid="B12">Chatzigeorgiou et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B126">Zhang et&#xa0;al., 2013</xref>). In roots, the sensor may be external to the epidermal cells, and detected by the proteins or lipids on the cell membrane. Alternatively, it could be within the cell and respond to small increases in cytosolic Na<sup>+</sup>. It is also assumed that plants must have mechanisms to detect both osmotic (water deficit) and ionic (salt-specific) stress. However, limited progress has been made because of the common usage of &#x2018;salt shock&#x2019;, a transfer of plants growing in non-saline hydroponic solutions to very high concentrations of NaCl or mannitol. This immediately causes a very large but transient rise in the concentration of cytosolic Ca<sup>2+</sup>. In Arabidopsis, OSCA1 is a hyperosmolality-gated calcium-permeable channel that results in increased cytosolic Ca<sup>2+</sup> (<xref ref-type="bibr" rid="B122">Yuan et&#xa0;al., 2014</xref>). Structural analysis of OSCA family members have shown these belong to a mechanosensitive ion channel. In rice, cryo-electron microscopy (Cryo-EM) structure and function have shown how the rice homolog OSCA1 can mediate hyperosmolality sensing and transport pathway gating (<xref ref-type="bibr" rid="B59">Maity et&#xa0;al., 2019</xref>). Homologs of OSCA1 have been identified in the genome of rice (<xref ref-type="bibr" rid="B50">Li et&#xa0;al., 2015</xref>), maize (<xref ref-type="bibr" rid="B11">Cao et&#xa0;al., 2020</xref>), wheat (<xref ref-type="bibr" rid="B105">Tong et&#xa0;al., 2022</xref>) and soybean (<xref ref-type="bibr" rid="B53">Liu et&#xa0;al., 2022a</xref>). However, the role of OSCA1 as an &#x2018;osmosensor&#x2019; is not yet proven as most experiments were done with very high concentrations of NaCl or mannitol which would cause plasmolysis, that is, extensive shrinkage of the protoplast with stretching of the plasma membrane between the sites where it remains tethered to the cell walls (<xref ref-type="bibr" rid="B64">Munns, 2002</xref>).</p>
<p>Salt stress sensors include both osmotic stress and Na<sup>+</sup> sensors and may include pectin in cell walls, ion transporters, mechanosensory proteins, purine receptors, annexins and voltage-gated channels (<xref ref-type="bibr" rid="B90">Shabala et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B109">Wang et&#xa0;al., 2022</xref>). In the model plant Arabidopsis<italic>, AtIPUT1</italic> that encodes an inositol phosphorylceramide glucuronosyltransferase, is required for the synthesis of glycosyl inositol phosphorylceramide (GIPC) sphingolipids, that is proposed as a potential salt sensor (<xref ref-type="bibr" rid="B36">Jiang et&#xa0;al., 2019</xref>). GIPCs are a class of glycosylated sphingolipids that are highly enriched in the outer leaflet of the plasma membrane (<xref ref-type="bibr" rid="B63">Mortimer and Scheller, 2020</xref>). GIPCs have been detected in barley using lipodomics (<xref ref-type="bibr" rid="B121">Yu et&#xa0;al., 2018</xref>), and in cotton, GIPC profiles change in response to salinity (<xref ref-type="bibr" rid="B55">Liu et&#xa0;al., 2022c</xref>). GIPCs are anchored in the plasma membrane and are activated by Ca<sup>2+</sup> influx, leading to the up-regulation of Na<sup>+</sup>/H<sup>+</sup> antiporters. Overexpression of <italic>IbIPUT1</italic> in sweet potato (<italic>Ipomoea batatas</italic> (L.) Lam), resulted in a decrease in the accumulation of Na<sup>+</sup> in root cells in response to salt stress (<xref ref-type="bibr" rid="B54">Liu et&#xa0;al., 2022b</xref>).</p>
<p>The highly conserved salt overly sensitive (SOS) pathway, first discovered in Arabidopsis is undoubtedly critical for salt tolerance (<xref ref-type="bibr" rid="B96">Shi et&#xa0;al., 2000</xref>). The SOS pathway consists of SOS1, a plasma membrane localised Na<sup>+</sup>/H<sup>+</sup> antiporter (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>); SOS2, a CBL-interacting protein kinase (CIPK) family kinase, and SOS3, a calcineurinB-like (CBL) family Ca<sup>2+</sup>-binding protein. The SOS pathway is well characterised in Arabidopsis and is thought to confer salt tolerance by regulating net Na<sup>+</sup> uptake at the soil-root interface. Although it has been extensively studied in Arabidopsis there is still relatively little known in crop plants. <italic>HvSOS1</italic> expression has been shown in the root stele and epidermis of barley roots (<xref ref-type="bibr" rid="B130">Zhu et&#xa0;al., 2016</xref>). In maize, a 4-bp frame-shifting deletion was identified in <italic>ZmSOS1</italic> impairing the function of SOS1, leading to a salt hypersensitive phenotype. A decrease in transcript level of <italic>ZmCBL8</italic> (a CBL/SOS3 component of maize SOS pathway) also led to increased shoot Na<sup>+</sup> content under salt conditions, indicating that the SOS pathway is crucial for salt tolerance (<xref ref-type="bibr" rid="B128">Zhou et&#xa0;al., 2022</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Crop root adaption for salt tolerance. Schematic diagram showing potential targets for designing a crop with a <italic>salt-tolerant</italic> root ideotype; <italic>root anatomical traits</italic> that prevent Na<sup>+</sup> entry into the xylem and use less energy, <italic>root system architecture</italic> (RSA) plasticity to avoid salt whilst optimizing nutrient and water uptake, and <italic>transport mechanisms for Na<sup>+</sup> exclusion</italic> from the root and retrieval from xylem, preventing accumulation of Na<sup>+</sup> in the shoot. SOS1 (Salt Overly Sensitive 1) is a sodium/proton antiporter (Na<sup>+</sup>/H<sup>+</sup>) that facilitates export of Na<sup>+</sup> out of the root and HKT1 (High affinity K Transporter 1) retrieves Na<sup>+</sup> from the xylem. Adapted from &#x201c;Wheat (grain filling stage)&#x201d; by <uri xlink:href="https://www.biorender.com">BioRender.com</uri> (2022).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-14-1120583-g003.tif"/>
</fig>
</sec>
<sec id="s5">
<label>5</label>
<title>Root system architecture</title>
<p>Root system architecture (RSA) refers to the spatial arrangement of the whole root system in the soil medium, modulated by root angle, type and rate of growth (<xref ref-type="bibr" rid="B41">Koevoets et&#xa0;al., 2016</xref>). The root surface area is also dependent on the development of root hairs and root diameter. RSA is complex and is considerably diverse among species, genotypes, and in space and time (<xref ref-type="bibr" rid="B56">Lynch, 1995</xref>). RSA is a plastic trait and responsible for establishing plant anchorage, optimising water and nutrient acquisition for plant growth, and avoiding unfavourable soil conditions (<xref ref-type="bibr" rid="B99">Smith and De Smet, 2012</xref>). Although there is significant research conducted on RSA in Arabidopsis, there is still limited research on the effect of salinity and other abiotic stresses on RSA in crop plants. One of the main limitations for understanding RSA is the difficulty in visualising root systems in soil.</p>
<sec id="s5_1">
<label>5.1</label>
<title>Root phenotyping tools</title>
<p>Most research has been conducted on Arabidopsis using 2D systems such on rhizotrons, growth pouches, or transparent artificial growth media (agar). Non-destructive 2D high-throughput root phenotyping platforms include GrowScreen-Rhizo (<xref ref-type="bibr" rid="B71">Nagel et&#xa0;al., 2012</xref>), Phytomorph (<xref ref-type="bibr" rid="B102">Subramanian et&#xa0;al., 2013</xref>), GrowScreen-PaGe (<xref ref-type="bibr" rid="B23">Gioia et&#xa0;al., 2016</xref>), RADIX (<xref ref-type="bibr" rid="B47">Le Mari&#xe9; et&#xa0;al., 2016</xref>) and RhizoTubes (<xref ref-type="bibr" rid="B35">Jeudy et&#xa0;al., 2016</xref>) (reviewed in <xref ref-type="bibr" rid="B4">Atkinson et&#xa0;al., 2019</xref>). Phenotyping of crop RSA in response to salinity has included both non-soil based methods such as growing roots vertically on agar plates (barley, Arabidopsis) (<xref ref-type="bibr" rid="B18">Galvan-Ampudia et al., 2013</xref>; <xref ref-type="bibr" rid="B94">Shelden et&#xa0;al., 2013</xref>), pouches (maize, tomato) (<xref ref-type="bibr" rid="B110">Wang et&#xa0;al., 2020</xref>), paper rolls in PVC tubes (wheat) (<xref ref-type="bibr" rid="B78">Rahnama et&#xa0;al., 2011</xref>) and soil-based methods such as the clear pot method (wheat; sodicity) (<xref ref-type="bibr" rid="B2">Anzooman et&#xa0;al., 2019</xref>) and rhizotrons (tomato) (<xref ref-type="bibr" rid="B20">Gandullo et&#xa0;al., 2021</xref>) (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). Wheat root systems have been extensively studied in the field using <italic>shovel-omics</italic> techniques (<xref ref-type="bibr" rid="B73">Ober et&#xa0;al., 2021</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Arabidopsis and crop root phenotypic responses to salinity.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Species</th>
<th valign="top" align="center">Root Phenotype</th>
<th valign="top" align="center">NaCl concentration (mM)</th>
<th valign="top" align="center">Growth media</th>
<th valign="top" align="center">References</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="3" align="left">Arabidopsis</td>
<td valign="top" align="left">Primary root length decreased, and lateral root growth promoted</td>
<td valign="top" align="center">50</td>
<td valign="top" align="center">Agar</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B132">Zolla et&#xa0;al. (2010)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Redistribution of biomass from main root to lateral roots</td>
<td valign="top" align="center">75 &#x2013; 125</td>
<td valign="top" align="center">Agar</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B37">Julkowska et&#xa0;al. (2017)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Halotropism &#x2013; root bending away from salt</td>
<td valign="top" align="center">50 &#x2013; 250</td>
<td valign="top" align="center">Agar</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B18">Galvan-Ampudia et&#xa0;al. (2013)</xref>
</td>
</tr>
<tr>
<td valign="top" rowspan="4" align="left">Barley</td>
<td valign="top" align="left">Reduction in number and length of seminal roots, reduced elongation rate</td>
<td valign="top" align="center">100 &#x2013; 150</td>
<td valign="top" align="center">Agar</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B93">Shelden et&#xa0;al. (2013)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Increased cortical cell length</td>
<td valign="top" align="center">100</td>
<td valign="top" align="center">Agar</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B91">Shelden et&#xa0;al. (2016)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Apoplastic barriers in endodermis; suberin deposition in cortical cells in elongation zone</td>
<td valign="top" align="center">100</td>
<td valign="top" align="center">Agar</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B28">Ho et&#xa0;al. (2020)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Reduced root hair density and root length</td>
<td valign="top" align="center">1 &#x2013; 100</td>
<td valign="top" align="center">Hydroponics</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B89">Shabala et&#xa0;al. (2003)</xref>
</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">Cotton</td>
<td valign="top" align="left">Primary root growth reduced above 75 mM, elongation rate decreased and shortened growth zone</td>
<td valign="top" align="center">1&#x2013;150</td>
<td valign="top" align="center">Germination paper rolls</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B127">Zhong and Lauchli (1993)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Length and weight enhanced of primary root, thinner roots</td>
<td valign="top" align="center">25 &#x2013; 100</td>
<td valign="top" align="center">Hydroponics</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B45">Kurth et&#xa0;al. (1986)</xref>
</td>
</tr>
<tr>
<td valign="top" rowspan="3" align="left">Maize</td>
<td valign="top" align="left">Elongation rate reduced in the primary root and cell division inhibited</td>
<td valign="top" align="center">80</td>
<td valign="top" align="center">Hydroponics</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B9">Bernstein and Kafkafi (2002)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Changes in RSA, reduced root growth</td>
<td valign="top" align="center">100</td>
<td valign="top" align="center">Soil - CT Scanning</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B101">Subramanian et&#xa0;al. (2015)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Root biomass reduced; salt tolerance positively correlated with primary root depth</td>
<td valign="top" align="center">50 &#x2013; 100</td>
<td valign="top" align="center">Semi-hydroponics</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B110">Wang et&#xa0;al. (2020)</xref>
</td>
</tr>
<tr>
<td valign="top" rowspan="4" align="left">Rice</td>
<td valign="top" align="left">Formation of apoplastic barriers</td>
<td valign="top" align="center">100 &#x2013; 200</td>
<td valign="top" align="center">Hydroponics</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B44">Krishnamurthy et&#xa0;al. (2011)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Lateral root density reduced in tolerant genotype</td>
<td valign="top" align="center">50 &#x2013; 250</td>
<td valign="top" align="center">Hydroponics</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B32">Ijaz et&#xa0;al. (2019)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Root biomass decreased, root: shoot biomass increased</td>
<td valign="top" align="center">50 &#x2013; 150</td>
<td valign="top" align="center">Filter paper</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B51">Lin and Kao (1999)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Shallow root growth angle</td>
<td valign="top" align="center">EC = 9 dS/m <sup>*</sup>
</td>
<td valign="top" align="center">Field (saline paddies)</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B39">Kitomi et&#xa0;al. (2020)</xref>
</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">Rye</td>
<td valign="top" align="left">Cell division decreased and cell death increased</td>
<td valign="top" align="center">250</td>
<td valign="top" align="center">Hydroponics</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B74">Ogawa et&#xa0;al. (2006)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Cell division increased</td>
<td valign="top" align="center">50 &#x2013; 100</td>
<td valign="top" align="center">Hydroponics</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B74">Ogawa et&#xa0;al. (2006)</xref>
</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">Sorghum</td>
<td valign="top" align="left">Halotropism &#x2013; root bending away from salt</td>
<td valign="top" align="center">300<break/>500</td>
<td valign="top" align="center">Agar<break/>Soil</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B18">Galvan-Ampudia et&#xa0;al. (2013)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Root: shoot biomass increased</td>
<td valign="top" align="center">- 0.8 MPa <sup>*</sup>
</td>
<td valign="top" align="center">Hydroponics</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B113">Weimberg et&#xa0;al. (1984)</xref>
</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">Tomato</td>
<td valign="top" align="left">Main root length decreased on agar and in pouches (not rhizotrons)</td>
<td valign="top" align="center">120</td>
<td valign="top" align="center">Rhizotrons, Pouches, Agar, Pots</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B20">Gandullo et&#xa0;al. (2021)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Halotropism &#x2013; root bending away from salt</td>
<td valign="top" align="center">300<break/>500</td>
<td valign="top" align="center">Agar<break/>Soil</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B18">Galvan-Ampudia et&#xa0;al. (2013)</xref>
</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">Wheat (Durum)</td>
<td valign="top" align="left">Seminal root growth inhibited</td>
<td valign="top" align="center">50 &#x2013; 200</td>
<td valign="top" align="center">PVC tubes &amp; filter paper</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B78">Rahnama et&#xa0;al. (2011)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Reduction in biomass, root: shoot biomass increased</td>
<td valign="top" align="center">1 &#x2013; 150</td>
<td valign="top" align="center">Pots (sand/ perlite)</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B31">Husain et&#xa0;al. (2004)</xref>
</td>
</tr>
<tr>
<td valign="top" rowspan="4" align="left">Wheat (Bread)</td>
<td valign="top" align="left">Seminal root growth decreased, lateral root growth enhanced, seminal root angle decreased</td>
<td valign="top" align="center">50 &#x2013; 200</td>
<td valign="top" align="center">PVC tubes &amp; filter paper</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B77">Rahnama et&#xa0;al. (2019)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Narrower seminal root angle</td>
<td valign="top" align="center">ESP = 17 % <sup>*</sup>
</td>
<td valign="top" align="center">Clear pot method</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B2">Anzooman et&#xa0;al. (2019)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Reduced root hair density and length</td>
<td valign="top" align="center">100</td>
<td valign="top" align="center">Hydroponics</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B85">Robin et&#xa0;al. (2016)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">Root biomass increased</td>
<td valign="top" align="center">EC &lt; 9 ds/m <sup>*</sup>
</td>
<td valign="top" align="center">Soil</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B72">Nuttall et&#xa0;al. (2006)</xref>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>* Electrical Conductivity (EC): 1 dS/m = 10 mM NaCl (<xref ref-type="bibr" rid="B65">Munns et al, 2020a</xref>); Osmotic Potential (MPa): - 0.1 MPa approximates 23 mM NaCl (<xref ref-type="bibr" rid="B113">Weimberg et&#xa0;al., 1984</xref>); Exchangeable Sodium Percentage (ESP) &gt; 17 % = strongly sodic soil.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>The development of non-destructive 3D phenotyping technologies such as X-ray computed tomography (CT), magnetic resonance imaging (MRI) and positron emission tomography (PET) (reviewed in <xref ref-type="bibr" rid="B4">Atkinson et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B60">Maqbool et&#xa0;al., 2022</xref>), will be extremely beneficial for future studies on root plasticity in crop species in response to environmental stresses such as salinity. X-ray CT scanning had been successfully employed to measure hydro-patterning in rice, maize and Arabidopsis (<xref ref-type="bibr" rid="B6">Bao et&#xa0;al., 2014</xref>) and salt stress in maize (<xref ref-type="bibr" rid="B101">Subramanian et&#xa0;al., 2015</xref>). To fully understand salt tolerance mechanisms in crops plants, measuring root traits non-invasively, and simultaneously with shoot traits will be crucial. Whole plant phenotyping capabilities such as the automated rhizotron platform GrowScreen-Rhizo provides the ability to simultaneous sense shoot and root growth (<xref ref-type="bibr" rid="B71">Nagel et&#xa0;al., 2012</xref>). 3D scanning can help to capture details of root systems such as lateral root growth and orientation that cannot be studied using traditional 2D methods. Differences in the structural complexity and space occupancy of the developing root system of corn seedlings in response to salinity has been reported using 3D images acquired from CT scanning (<xref ref-type="bibr" rid="B101">Subramanian et&#xa0;al., 2015</xref>). Improvements in root phenotyping platforms will enable screening for genetic diversity in crop species, allowing the selection of salt-tolerant genotypes that can be incorporated into breeding programs and evaluated in saline field conditions.</p>
</sec>
<sec id="s5_2">
<label>5.2</label>
<title>Changes in root system architecture in response to salinity</title>
<p>Many plants will exhibit changes in RSA in response to low soil moisture and salinity with the effect largely dependent on the type and severity of the stress, and the crop species. Salinity often occurs in arid and semi-arid lands, therefore crop plants have evolved mechanisms to cope with low water potential caused by salinity and drought (<xref ref-type="bibr" rid="B70">Munns and Tester, 2008</xref>). In wheat, the allocation of primary roots and lateral roots are strongly influenced by soil conditions including the soil moisture profile (<xref ref-type="bibr" rid="B82">Rich and Watt, 2013</xref>). A subsequent study found that wheat varieties developed for high yield on stored soil moisture have deep and vigorous root systems (<xref ref-type="bibr" rid="B81">Rich et&#xa0;al., 2016</xref>). This work was done in field soils in Australia and India, but most studies have been carried out in the laboratory in pots filled with soil or on media with artificial substrates (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). In the next two sections, we compare studies evaluating changes in RSA in response to salinity conducted using non-soil-based methods and pot studies.</p>
<p>In both barley and wheat, seminal root growth was inhibited by NaCl concentrations in the root medium in a dose dependent manner (<xref ref-type="bibr" rid="B78">Rahnama et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B94">Shelden et&#xa0;al., 2013</xref>). In a study on bread wheat (<italic>Triticum aestivum</italic> L.), root growth and branching patterns were modified in response to salinity with primary root growth inhibited and branch root elongation promoted (<xref ref-type="bibr" rid="B77">Rahnama et&#xa0;al., 2019</xref>). In durum wheat (<italic>Triticum turgidum</italic> L. ssp <italic>durum</italic>), seminal root growth was inhibited more than branch roots in three out of four genotypes examined (<xref ref-type="bibr" rid="B78">Rahnama et&#xa0;al., 2011</xref>).</p>
<p>In Arabidopsis, primary and lateral root length, and lateral root number, were consistently reduced due to salinity stress (<xref ref-type="bibr" rid="B38">Karlova et&#xa0;al., 2021</xref>). Salt stress reduced primary root length more severely than elongation of lateral roots (<xref ref-type="bibr" rid="B37">Julkowska et&#xa0;al., 2017</xref>), and lateral root growth emergence was promoted in response to salt stress (<xref ref-type="bibr" rid="B132">Zolla et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B19">Galvan-Ampudia and Testerink, 2011</xref>). Natural variation in RSA has been observed in Arabidopsis accessions, which was linked to the expression of HKT1 (a transporter that removes Na<sup>+</sup> from the xylem) in the roots (<xref ref-type="bibr" rid="B37">Julkowska et&#xa0;al., 2017</xref>). Also in Arabidopsis, it was observed that emerging and young lateral roots were less likely than primary roots to undergo programmed cell death at the lethal salt concentration of 200 mM NaCl (<xref ref-type="bibr" rid="B1">Ambastha et&#xa0;al., 2020</xref>).</p>
<p>In the tolerant rice genotype KS-282, the lateral root density was reduced in response to salt stress, compared to the sensitive genotype (<xref ref-type="bibr" rid="B32">Ijaz et&#xa0;al., 2019</xref>). In tomato, phenotypic analysis using rhizotrons showed that the distribution of lateral roots changed in response to salt stress with lateral root formation inhibited primarily at the soil surface (<xref ref-type="bibr" rid="B20">Gandullo et&#xa0;al., 2021</xref>). Overall, these observations suggest that the pattern of root system architecture might change in favour of deeper roots with fewer lateral roots, maximising the opportunity to access deeper and less saline water tables. However, the total root mass is still reduced in comparison to plants in non-saline soils.</p>
</sec>
<sec id="s5_3">
<label>5.3</label>
<title>Field studies</title>
<p>Phenotyping root traits in the field, although possible, is constrained by laborious sampling methods that are time-consuming, costly and require significant inputs of labour. This is usually done when crops reach maturity as sampling in the field is destructive and done at the same time as harvest. Field sites can also experience yearly variations due to changing environmental conditions, influencing the mature root systems (<xref ref-type="bibr" rid="B81">Rich et&#xa0;al., 2016</xref>). High-throughout, automated and affordable field phenotyping is still in development (<xref ref-type="bibr" rid="B81">Rich et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B112">Wasson et&#xa0;al., 2016</xref>). <xref ref-type="bibr" rid="B112">Wasson et&#xa0;al. (2016)</xref> developed a portable fluorescence imaging system (BlueBox) to automate root counting in soil cores with image analysis software directly in the field. Controlled-environment screens are aimed at circumventing the problems associated with field phenotyping, however these mostly focus on seedling and immature plants due to constraints with pot size and glasshouse facilities. Given this, there are relatively few studies that measure root traits in saline soils in field conditions.</p>
<p>Soil cores taken from the field and placed in pots in controlled environment conditions provide a representative experimental system. Plants were grown in cores from saline soils and compared to cores taken from benign soils (<xref ref-type="bibr" rid="B72">Nuttall et&#xa0;al., 2006</xref>). Root growth of durum wheat and lentil (both moderately salt-sensitive species) was reduced at depths of 0.3&#xa0;m in the hostile soil. The root system of barley adapted so that root biomass was greater in soil to a depth of 0.4&#xa0;m, however at deeper positions in the soil profile there were fewer roots resulting in less extraction of water at depth.</p>
<p>Sodicity is a common occurrence in saline soils. Using the clear pot method, seedling coleoptile length and root angle were measured in different bread wheat genotypes grown in sodic soils (<xref ref-type="bibr" rid="B83">Richard et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B2">Anzooman et&#xa0;al., 2019</xref>). Genetic variation in seminal root angle was observed, with genotypes that had a narrower root angle having greater root depth, potentially allowing the roots to obtain soil moisture from deeper layers.</p>
<p>In rice, the <italic>qSOR1</italic> gene (responsible for the surface rooting phenotype) was identified to be a <italic>DRO1</italic> homolog in rice (deep rooting allele) and appears to be involved in the root gravitropic response (<xref ref-type="bibr" rid="B39">Kitomi et&#xa0;al., 2020</xref>). In saline paddies, near-isogenic lines carrying the qSOR1 loss-of-function allele had soil-surface roots (SOR) that enabled rice to avoid the reducing stresses of saline soils, resulting in increased yields compared to the parental cultivars without SOR.</p>
<p>Although both salt and drought stress result in a water deficit stress around the roots, changes to RSA are quite distinct between the two stresses (<xref ref-type="bibr" rid="B108">Viana et&#xa0;al., 2022</xref>). The root response may be dependent on how the stress is imposed, for example, water stress induced by withholding water from pots filled with clay-based soil will result in soil compaction, whereas use of a substrate like vermiculite (<xref ref-type="bibr" rid="B120">Yamaguchi and Sharp, 2010</xref>) or perlite avoids this. Salinity stress is usually applied in hydroponics or sand culture and can be kept at a constant degree. Drought is unavoidably a gradual change over time; the use of liquid media containing osmolytes is not recommended. The addition of NaCl will impose an initial osmotic stress. Primary root growth is often maintained in response to both water deficit and salinity and root: shoot ratio is increased. In maize, genotypes with fewer but longer lateral roots had increased rooting depth (<xref ref-type="bibr" rid="B124">Zhan et&#xa0;al., 2015</xref>). In contrast, in Arabidopsis, there was a redistribution of biomass from the main root to lateral roots (<xref ref-type="bibr" rid="B37">Julkowska et&#xa0;al., 2017</xref>).</p>
</sec>
</sec>
<sec id="s6">
<label>6</label>
<title>Halotropism: A strategy to avoid salt</title>
<p>Gravitropism is central to root growth as it is the gravity stimulus that drives the direction of root growth, with gravity sensing known to occur in the columella cells in the root tip. Salinity can interfere with the gravitropic response. Negative halotropism is the response of roots to grow away from salt. This could be a trait that is specific for salt-sensitive species, since in the halophytes (salt-tolerant species) <italic>Bassia indica</italic> and <italic>Limonium bicolor</italic>, the opposite phenotype &#x2013; where roots grow towards salt, termed &#x201c;positive halotropism&#x201d;, has been observed (<xref ref-type="bibr" rid="B95">Shelef et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B48">Leng et&#xa0;al., 2019</xref>). Whether halotropism exists in crops, rather than root growth being inhibited by decreased water potential of the soil (due to drought or salinity), is unknown, and the costs to the plant modifying root architecture are unexplored (<xref ref-type="bibr" rid="B66">Munns and Gilliham, 2015</xref>). For roots to grow away from salt at depth, the exposure to salt must challenge or modify the plants response to gravity, causing the root growth direction to change. In the salt-sensitive species, tomato and sorghum, root bending away from salt is a strategy to avoid stress (<xref ref-type="bibr" rid="B18">Galvan-Ampudia et&#xa0;al., 2013</xref>). Root bending was only seen at &gt; 300 mM NaCl concentrations indicating that the salt concentration needs to be relatively high to induce a halotropic root response.</p>
<p>Much of the research conducted on halotropism and root system architecture traits have been in the model plant, Arabidopsis. In Arabidopsis, the negative halotropic response was shown to be salt-specific ie. the roots did not change direction due to an equivalent osmotic gradient (induced by mannitol or KCl). The molecular mechanism for halotropism is due to the redistribution of the hormone auxin through the regulation of the auxin protein PIN2 (<xref ref-type="bibr" rid="B18">Galvan-Ampudia et&#xa0;al., 2013</xref>). Halotropism is dependent on the asymmetric redistribution of the hormone auxin from the side of the root closest to the salt, to the side of the root furthest from the salt. The salt-specific response involves changes in expression and localisation of the two auxin transporters, PIN2 (influx) and AUX1 (efflux) in the root tip (<xref ref-type="bibr" rid="B107">van den Berg et&#xa0;al., 2016</xref>). Arabidopsis plants overexpressing SOS1, showed a reduced halotropic response and Arabidopsis <italic>sos1</italic> and <italic>sos2</italic> mutants showed halotropic responses at lower thresholds of NaCl (<xref ref-type="bibr" rid="B18">Galvan-Ampudia et&#xa0;al., 2013</xref>). Taken together, these observations provide evidence that high internal concentrations of cellular Na<sup>+</sup> may trigger the directional root growth, however, this has been unexplored experimentally. Differences in Na<sup>+</sup> sequestration in the roots of durum and bread wheat, have been linked with differences in salt tolerance, however it is unknown if internal salt concentrations correlate with the halotropic response (<xref ref-type="bibr" rid="B117">Wu et&#xa0;al., 2018a</xref>). Whether other crop species, such as barley and wheat, have similar halotropic responses and share the same regulatory mechanisms is unknown.</p>
<p>Soil salinity, in both natural and managed environments (rain-fed and irrigated), is highly heterogeneous, and understanding how plants respond to this spatial and temporal heterogeneity is important for sustainable agriculture in more marginal lands. Split-root studies have shown how plants compensate for water and or nutrient deficiency, by optimizing root-foraging in the most favourable parts of the soil. This also applies to a saline soil. A review of halophytes grown with roots split between low and high salinity media, versus uniformly saline media, showed that water uptake from the least saline part of the soil or solution was the key factor driving shoot growth. Plants with part of the root at low salinity (0&#x2013;10 mM NaCl) had 3- to 10-fold higher shoot dry mass than plants with roots in uniformly saline (50&#x2013;800 mM NaCl) media (<xref ref-type="bibr" rid="B7">Bazihizina et&#xa0;al., 2012</xref>).</p>
<p>Plants exclude 97-98% of the salt, as remarked in the Introduction, so unless the soil receives frequent rainfall, or irrigation, the salt will build up to concentrations that prevent uptake further uptake of water. This implies that roots in saline soils without irrigation must continually forage for low-salt patches while balancing the need for nutrients. The root system architecture must be flexible enough to continue <italic>in situ</italic> if there is a history or &#x2018;memory&#x2019; of frequent rain or irrigation that dilutes the salt that builds up around the roots or continue the exploration for low salt patches. The latter could become very expensive in terms of carbon cost.</p>
</sec>
<sec id="s7">
<label>7</label>
<title>Salinity induces root anatomical changes</title>
<p>Apoplastic barriers such as suberin lamellae and casparian bands are thought to limit the movement of salt transversely across the root by mass flow. In barley, salt stress reduces the hydraulic conductivity in the system by reducing water flow along the transcellular path (<xref ref-type="bibr" rid="B40">Knipfer et&#xa0;al., 2021</xref>). Transcriptomic and metabolomic analyses showed over-representation of genes and metabolites involved in the phenylpropanoid biosynthesis pathway in barley roots (<xref ref-type="bibr" rid="B28">Ho et&#xa0;al., 2020</xref>). Genetic differences have been observed in the formation of apoplastic barriers in barley genotypes (<xref ref-type="bibr" rid="B28">Ho et&#xa0;al., 2020</xref>) and rice (<xref ref-type="bibr" rid="B44">Krishnamurthy et&#xa0;al., 2011</xref>). Salt stress resulted in an increase in the production and abundance of apoplastic barriers in the endodermis of the Australian domesticated cultivar Clipper (<xref ref-type="bibr" rid="B28">Ho et&#xa0;al., 2020</xref>). In contrast, high levels of suberin synthesis-related gene expression and localization of suberin in cortical cells was observed in the elongation zone of the landrace Sahara, most likely restricting apoplastic transport of Na<sup>+</sup> (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). At 100 mM NaCl, Clipper accumulated higher concentrations of Na<sup>+</sup> in the root maturation zone compared to the landrace Sahara (<xref ref-type="bibr" rid="B94">Shelden et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B92">Shelden et&#xa0;al., 2020</xref>). In both genotypes, K<sup>+</sup> strongly correlated with Na<sup>+</sup> concentration. A similar result was found in a transcript and proteomics analysis by <xref ref-type="bibr" rid="B120">Yamaguchi and Sharp (2010)</xref> with maize roots grown at low water potentials in vermiculite (low water content), suggesting that the formation of apoplastic barriers due to suberin and lignin deposition in cell walls of the stele was a response to low water potential. The deposition of suberised barriers in rice roots correlated with a sharp reduction in the uptake of Na<sup>+</sup> in the shoot (<xref ref-type="bibr" rid="B44">Krishnamurthy et&#xa0;al., 2011</xref>).</p>
<p>An increase in cortical cell diameter was shown to occur in response to drought in wheat and is believed to lead to a reduction in energy usage (<xref ref-type="bibr" rid="B15">Colombi et&#xa0;al., 2019</xref>). Decreasing the number of cortical cell files by one or two can also reduce the energy costs associated with Na<sup>+</sup> exclusion (<xref ref-type="bibr" rid="B17">Foster and Miklavcic, 2019</xref>; <xref ref-type="bibr" rid="B65">Munns et&#xa0;al., 2020a</xref>). Enlargement of root cortical cells in response to salt stress has been reported in barley (<xref ref-type="bibr" rid="B91">Shelden et&#xa0;al., 2016</xref>), maize (<xref ref-type="bibr" rid="B49">Li et&#xa0;al., 2014</xref>), cotton (<xref ref-type="bibr" rid="B45">Kurth et&#xa0;al., 1986</xref>) and halophytes (<xref ref-type="bibr" rid="B24">Hajibagheri et&#xa0;al., 1985</xref>) and may be due to increased vacuolation. Vacuolation is an adaptive mechanism to facilitate osmotic adjustment by the compartmentalisation of Na<sup>+</sup> and Cl<sup>-</sup>.</p>
<p>Plasticity in the development of root epidermal cells and differentiation of root hairs is thought to be a response to sensing environmental signals and adjusting to the stress response. In Arabidopsis, root hair density and length decreased in a dose dependant manner in primary roots (<xref ref-type="bibr" rid="B111">Wang et&#xa0;al., 2008</xref>). In both barley and wheat, root hair density and length were significantly reduced by salinity (<xref ref-type="bibr" rid="B89">Shabala et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B85">Robin et&#xa0;al., 2016</xref>), however osmotic stress has been shown to increase root hair density (<xref ref-type="bibr" rid="B84">Robin et&#xa0;al., 2021</xref>). <xref ref-type="bibr" rid="B65">Munns et&#xa0;al. (2020a)</xref> speculated that root hair cells may sequester salt into vesicles that are moved to the cell surface and extruded into the soil like what occurs in epidermal bladder cells of halophytes.</p>
</sec>
<sec id="s8">
<label>8</label>
<title>Root tissue-specific expression of salt and water transporters</title>
<p>Membrane transporters located in the root tissues are responsible for the uptake of both Na<sup>+</sup> and Cl<sup>-</sup> ions from the soil, and for the uptake of water by aquaporins (<xref ref-type="bibr" rid="B13">Chaumont and Tyerman, 2014</xref>). Understanding the spatial and temporal expression of salt and water transporters is important to gain a complete understanding of salinity tolerance and root adaptation. It is also necessary to gain insights into how we can engineer crops to have improved root systems adapted to specific environments. At any point in time there are changes in the cell-specific spatial response to stress. Our ability to measure these changes are now enhanced by having access to high resolution &#x2018;omic technologies for spatial profiling of metabolites, gene transcripts, proteins and ions (<xref ref-type="bibr" rid="B93">Shelden and Roessner, 2013</xref>).</p>
<p>The spatial and temporal variation in the expression of different transporters involved in water and nutrient transport in crop root tissues has been previously reported by <xref ref-type="bibr" rid="B3">Arsova et&#xa0;al. (2020)</xref>, however our knowledge in this area is still limited, especially in crop plants. Salt overly sensitive (SOS1), a Na<sup>+</sup>/H<sup>+</sup> antiporter, has previously been shown to be expressed in the epidermal cells surrounding the root apex in Arabidopsis (<xref ref-type="bibr" rid="B97">Shi et&#xa0;al., 2002</xref>) and barley (<xref ref-type="bibr" rid="B130">Zhu et&#xa0;al., 2016</xref>). Root epidermal cells contain Na<sup>+</sup> transporters such as HvHKT1;1 in barley (<xref ref-type="bibr" rid="B26">Han et&#xa0;al., 2018</xref>). The distribution of membrane transporters associated with salt and water transport varies with both root age and space however mapping of transporters is biased towards Arabidopsis and young roots as information is lacking from other species and older roots (<xref ref-type="bibr" rid="B3">Arsova et&#xa0;al., 2020</xref>).</p>
<p>There are several genes encoding membrane transporters that have proven potential for increasing salt tolerance in crops. These include <italic>Nax2</italic> from wheat (<xref ref-type="bibr" rid="B67">Munns et&#xa0;al., 2012</xref>), <italic>SKC1</italic> (<italic>OsHKT1;5</italic>) from rice (<xref ref-type="bibr" rid="B33">Ismail and Horie, 2017</xref>) and the HAK family in maize seedlings (<xref ref-type="bibr" rid="B125">Zhang et&#xa0;al., 2019</xref>). Na<sup>+</sup> exclusion genes, <italic>Nax1</italic> (<italic>TmHKT1;4-A2)</italic> and <italic>Nax2</italic> (<italic>TmHKT1;5-A)</italic> from the diploid wheat ancestor <italic>Triticum monococcum</italic> were introgressed into durum wheat Tamaroi and have both been shown to remove Na<sup>+</sup> from the xylem in roots (<xref ref-type="bibr" rid="B67">Munns et&#xa0;al., 2012</xref>). <italic>Nax2</italic> is expressed in the stele, specifically in the plasma membrane of the parenchyma cells lining the xylem vessels (<xref ref-type="bibr" rid="B67">Munns et&#xa0;al., 2012</xref>) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). <italic>Nax1</italic> can also remove Na<sup>+</sup> from the xylem flowing through leaf sheaths (<xref ref-type="bibr" rid="B34">James et&#xa0;al., 2011</xref>). <italic>Nax2</italic> in Tamaroi resulted in higher grain yields in response to both salinity (<xref ref-type="bibr" rid="B67">Munns et&#xa0;al., 2012</xref>) and sodicity (<xref ref-type="bibr" rid="B21">Genc et&#xa0;al., 2016</xref>). <italic>TaHKT1;5-D Kna1</italic> locus is localised on the plasma membrane of the root stele of bread wheat (<italic>Triticum aestivum</italic> L.) and retrieves Na<sup>+</sup> from the xylem (<xref ref-type="bibr" rid="B10">Byrt et&#xa0;al., 2014</xref>).</p>
</sec>
<sec id="s9">
<label>9</label>
<title>Future perspectives: Breeding crops with root traits for salt-tolerance</title>
<p>Whilst there is a significant amount of research on root adaptation to salinity in the model plant Arabidopsis, we now need to focus our efforts on expanding our knowledge in crop species. Many of our major crop species are monocotyledons (ie. wheat, barley, rice, and maize) and have different root types and anatomical features compared to the dicot Arabidopsis. It is therefore likely they will have different mechanisms to adapt to saline soils. Understanding the root response to salt stress is complicated as it is dependent on species, genotype, plant age, and the intensity and duration of the stress. Many root studies have also been carried out in the laboratory in pots filled with soil or on media with artificial substrates, with very limited field studies. The advent of new high-throughput phenotyping platforms and technologies will help us to gain a better understanding of the diversity of root responses to saline soils across species. In the future, it will also be imperative to assess root traits in the field, and capture root responses to heterogenous soils.</p>
<p>Exploiting root traits with specific ideotypes in crop breeding has been shown to be successful for nitrogen acquisition and water capture in maize (<xref ref-type="bibr" rid="B57">Lynch, 2019</xref>). Salinity is a multigenic trait and identifying a specific root ideotype for salinity tolerance will be more challenging. We propose a <italic>salt-tolerant</italic> root ideotype for designing a root system adapted to saline soils. The <italic>salt-tolerant</italic> root ideotype would include root plasticity to allow roots to avoid highly saline soils whilst maximising water and nutrient uptake, transport mechanisms to exclude Na<sup>+</sup> from the root and root anatomical traits to restrict Na<sup>+</sup> movement into the xylem and conserve energy (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). The identification of specific root traits adapted to saline soils and with current advances in crop genetics, these traits can be incorporated into crop breeding programs, leading to improved yields on saline soils.</p>
</sec>
<sec id="s10" sec-type="author-contributions">
<title>Author contributions</title>
<p>MS and RM both contributed to writing the article. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s11" sec-type="funding-information">
<title>Funding</title>
<p>MS acknowledges financial support from the Australian Research Council (DP200103168, DP220102785) and University of Adelaide Mortlock Bequest. RM and MS acknowledge financial support from the Australian Research Council Centre of Excellence in Plant Energy Biology (CE140100008).</p>
</sec>
<sec id="s12" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s13" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
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