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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2022.872566</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Recent Advances for Drought Stress Tolerance in Maize (<italic>Zea mays</italic> L.): Present Status and Future Prospects</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Sheoran</surname> <given-names>Seema</given-names></name>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1593157/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Kaur</surname> <given-names>Yashmeet</given-names></name>
</contrib>
<contrib contrib-type="author">
<name><surname>Kumar</surname> <given-names>Sushil</given-names></name>
</contrib>
<contrib contrib-type="author">
<name><surname>Shukla</surname> <given-names>Shanu</given-names></name>
<uri xlink:href="http://loop.frontiersin.org/people/1739043/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Rakshit</surname> <given-names>Sujay</given-names></name>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Kumar</surname> <given-names>Ramesh</given-names></name>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1415088/overview"/>
</contrib>
</contrib-group>
<aff><institution>Indian Council of Agricultural Research-Indian Institute of Maize Research</institution>, <addr-line>Ludhiana</addr-line>, <country>India</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Amol N. Nankar, Center of Plant Systems Biology and Biotechnology, Bulgaria</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Olubukola Oluranti Babalola, North-West University, South Africa; Blanca E. Barrera-Figueroa, Universidad del Papaloapan, Mexico</p></fn>
<corresp id="c001">&#x002A;Correspondence: Ramesh Kumar, <email>rk.phagna@gmail.com</email></corresp>
<fn fn-type="present-address" id="fn002"><p><sup>&#x2020;</sup>Present address: Seema Sheoran, Indian Council of Agricultural Research-Indian Agricultural Research Institute, Regional Station, Karnal, India</p></fn>
<fn fn-type="other" id="fn004"><p>This article was submitted to Technical Advances in Plant Science, a section of the journal Frontiers in Plant Science</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>30</day>
<month>05</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>13</volume>
<elocation-id>872566</elocation-id>
<history>
<date date-type="received">
<day>09</day>
<month>02</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>26</day>
<month>04</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2022 Sheoran, Kaur, Kumar, Shukla, Rakshit and Kumar.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Sheoran, Kaur, Kumar, Shukla, Rakshit and Kumar</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Drought stress has severely hampered maize production, affecting the livelihood and economics of millions of people worldwide. In the future, as a result of climate change, unpredictable weather events will become more frequent hence the implementation of adaptive strategies will be inevitable. Through utilizing different genetic and breeding approaches, efforts are in progress to develop the drought tolerance in maize. The recent approaches of genomics-assisted breeding, transcriptomics, proteomics, transgenics, and genome editing have fast-tracked enhancement for drought stress tolerance under laboratory and field conditions. Drought stress tolerance in maize could be considerably improved by combining omics technologies with novel breeding methods and high-throughput phenotyping (HTP). This review focuses on maize responses against drought, as well as novel breeding and system biology approaches applied to better understand drought tolerance mechanisms and the development of drought-tolerant maize cultivars. Researchers must disentangle the molecular and physiological bases of drought tolerance features in order to increase maize yield. Therefore, the integrated investments in field-based HTP, system biology, and sophisticated breeding methodologies are expected to help increase and stabilize maize production in the face of climate change.</p>
</abstract>
<kwd-group>
<kwd>drought</kwd>
<kwd>genome editing</kwd>
<kwd>high-throughput phenotyping</kwd>
<kwd>maize</kwd>
<kwd>omics</kwd>
<kwd>QTL mapping</kwd>
</kwd-group>
<counts>
<fig-count count="2"/>
<table-count count="5"/>
<equation-count count="0"/>
<ref-count count="202"/>
<page-count count="18"/>
<word-count count="15286"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1" sec-type="intro">
<title>Introduction</title>
<p>The average global temperature is rising, and the environment is becoming more unpredictable, with severe drought occurring (<xref ref-type="bibr" rid="B71">IPCC, 2013</xref>; <xref ref-type="bibr" rid="B44">EPA, 2021</xref>). As per estimates, water scarcity is expected to affect 1.5&#x2013;1.7 billion people in South Asia by 2050 (<xref ref-type="bibr" rid="B177">World Bank Group, 2021</xref>). Agriculture is the most vulnerable sector to this rapid climate change. Among many unprecedented challenges, drought is the major menace to crop production, worldwide. Drought is one of the most serious abiotic stresses, affecting human health and crop productivity in about a third of the world&#x2019;s population. According to FAO estimates, drought caused a direct loss of USD 29 billion to agriculture in developing countries from 2005 to 2015 (<xref ref-type="bibr" rid="B46">FAO, 2021</xref>). As a result, it has become a major element in undermining the positive impacts of technological interventions, fertilization, and other contemporary developments made in recent past (<xref ref-type="bibr" rid="B94">Lobell et al., 2011</xref>). Hence, it is critical to develop crop varieties that, in addition to delivering higher yields, can withstand abiotic stresses like drought (<xref ref-type="bibr" rid="B51">Fita et al., 2015</xref>; <xref ref-type="bibr" rid="B126">Raza et al., 2019</xref>). Being the major biofuel and biotech (as 92% genetically modified corn in United States) crop of world, maize (<italic>Zea mays</italic> L.) has been anticipated to become the most important crop as its importance goes beyond food and feed (<xref ref-type="bibr" rid="B138">Schwietzke et al., 2009</xref>; <xref ref-type="bibr" rid="B181">Yadava et al., 2017</xref>). Drought is one of the major constraints in maize production as nearly 80% of wet-season maize is grown in rainfed conditions and dry season maize suffers severe water shortage (<xref ref-type="bibr" rid="B157">Trachsel et al., 2016</xref>). Depending on the intensity or duration of drought stress and crop stage, the maize yield losses vary from 30 to 90%, severely affecting the flowering and grain filling stages (<xref ref-type="bibr" rid="B133">Sah et al., 2020</xref>). In most of the countries, maize is cultivated under rainfed areas with 300&#x2013;500 mm of precipitation, which is lower than the critical level to obtain decent yield (<xref ref-type="bibr" rid="B133">Sah et al., 2020</xref>). Since, genetic solutions are unlikely to cover more than 30% of the gap between potential and realized yield under water stress hence, the understanding of genetics and further applying it to improve drought tolerance is a key component to stabilize global maize production. The advanced molecular breeding approaches like marker-assisted selection (MAS), transgenics, and genome-editing also holds great promises to improve maize production against drought stress.</p>
<p>Recent studies have projected that by 2050 the global average temperature will rise and probably exceed by 2&#x00B0;C under the current high emission scenario (<xref ref-type="bibr" rid="B152">Tesfaye et al., 2018</xref>). It will cause additional maize yield loss of 10 million tons per year with increasing temperature and changing rainfall patterns (<xref ref-type="bibr" rid="B152">Tesfaye et al., 2018</xref>). Hence, the novel molecular approaches in genomics era have mainly targeted the dissection and manipulation of drought stress related traits, genes/quantitative trait loci (QTLs), and molecular pathways (<xref ref-type="bibr" rid="B37">Deikman et al., 2012</xref>; <xref ref-type="bibr" rid="B81">Kumar A. et al., 2022</xref>). In addition, different omics platforms also facilitate the extensive mining of the transcriptomes, proteomes and metabolomes involved in drought tolerant mechanisms (<xref ref-type="bibr" rid="B184">Yu D. et al., 2021</xref>). Therefore, the objective of this review is to assess the recent progress and potential benefits of novel breeding technologies made in maize to develop drought tolerance. Untangling the molecular and physiological mechanisms for drought tolerant associated traits is essential to improve crops through integrating advanced breeding tools with biotechnology.</p>
</sec>
<sec id="S2">
<title>Morphological, Physiological, and Molecular Responses of Maize to Drought</title>
<p>Drought stress has a multifaceted impact on plant organization, resulting in complex and often spontaneous physiological and cellular responses. The vegetative, silking (flowering), and ear stages (grain filling) of maize are the most susceptible to drought stress, with yield losses of up to 25, 50, and 21%, respectively (<xref ref-type="bibr" rid="B133">Sah et al., 2020</xref>). It interferes with various molecular and physiological processes involved in plant growth and development, including photosynthetic activity, abscisic acid (ABA) accumulation, osmotic adjustment, and antioxidant capacity (<xref ref-type="bibr" rid="B55">Gong et al., 2014</xref>). Physiologically, when plants are stressed, they consume a large amount of adenosine triphosphate (ATP), draining their energy, and causing irreversible damage or even plant death. Plants, on the other hand, have certain adaptative mechanisms of &#x201C;metabolic flexibility&#x201D; that protect plants by activating apyrophosphate, which is required for transitioning poly (ADP-ribose) into ATP molecules (<xref ref-type="bibr" rid="B60">Hakme et al., 2008</xref>), or alternative glycolytic reactions override ATP-requiring steps, and finally the salvage pathways are induced to counteract the effects of ATP depletion (<xref ref-type="bibr" rid="B39">Dobrota, 2006</xref>). In response to a water deficit, adaptive traits such as osmotic adjustment, dehydration tolerance, and a reduction in photosynthetic activity emerge. Reduced photosynthetic activity results in stomatal closure and decreased photosynthetic enzyme production. Drought stress-related physiological changes at the cellular level include turgor loss and changes in membrane fluidity and composition. During drought stress, the ABA hormone concentration got increased which triggers an internal signal transduction cascade that led to reduce the osmotic potential of guard cells <italic>via</italic> loss of K<sup>+</sup> and Cl<sup>&#x2013;</sup>, resulting in stomatal closure (<xref ref-type="bibr" rid="B7">Anami et al., 2009</xref>).</p>
<p>Morphologically, plant growth and development are hampered due to disruptions in the cell cycle machinery (<xref ref-type="bibr" rid="B29">Carneiro et al., 2021</xref>). The perception of abiotic stress activates signaling cascades that stimulate cell cycle checkpoints, resulting in an impaired G1 to S transition, slowed DNA replication, and/or delayed entry into mitosis (<xref ref-type="bibr" rid="B75">Kadota et al., 2005</xref>; <xref ref-type="bibr" rid="B123">Qi and Zhang, 2020</xref>). Water stress causes meristem shortening in wheat and maize leaves and increases cell cycle duration due to decreased CDK activity (<xref ref-type="bibr" rid="B56">Granier et al., 2000</xref>). Changes in root and shoot growth, leading to increased root/shoot ratio, tissue water storage capacity, cuticle thickness, and water permeability are also potentially important in the long run, with root growth changes being the most important for crop plants (<xref ref-type="bibr" rid="B164">Verslues et al., 2006</xref>). In early days, corn plants that are severely water-stressed (WS) respond by rolling their leaves. Spikelet development is delayed, resulting in higher anthesis-silking interval (ASI), silk senescence, and pollen abortion (<xref ref-type="bibr" rid="B97">Lu et al., 2011</xref>; <xref ref-type="bibr" rid="B41">Edmeades, 2013</xref>). Stomatal closure, which reduces transpiration and CO<sub>2</sub> absorption and subsequently leads to a decrease in photosynthetic activity, is one of the first reactions to drought stress (<xref ref-type="bibr" rid="B173">Wang et al., 2018</xref>). Severe stress during the flowering stage induces full ear abortion, and the plant becomes barren. Drought disrupts developmental stages by limiting leaf growth, plant height, and tassel architectural characteristics, which in turn reduce crop yield since plants require adequate photosynthate to acquire a necessary stature (<xref ref-type="bibr" rid="B13">Aslam et al., 2015</xref>). Many plants, including maize, respond to water scarcity by shifting growth and dry matter accumulation away from the shoot and toward the root (<xref ref-type="bibr" rid="B102">Maazou et al., 2016</xref>).</p>
<p>At metabolic level, many amino acids in the sap of WS plants increases transiently, and got accumulated only under severe water stress. Alterations in solute concentration, as well as protein&#x2013;protein and protein&#x2013;lipid interactions, are all metabolic changes linked to drought stress (<xref ref-type="bibr" rid="B161">Valliyodan and Nguyen, 2006</xref>). The synthesis of osmo-protectants and osmolytes is associated with the plant&#x2019;s defense response to drought stress. As a response to water scarcity, adaptation mechanisms such as phytoalexin production, activation of the general phenylpropanoid pathway, and induction of lignin biosynthesis have evolved. Salicylic acid, methyl salicylate, jasmonic acid, methyl jasmonate, and other small molecules produced as a result of stress can also function as signaling molecules stimulating systemic defense and adaptability retorts (<xref ref-type="bibr" rid="B111">Nadeem et al., 2019</xref>), whereas others protect plants from oxidative damage caused by a variety of stresses, such as ascorbic acid, glutathione, tocopherols, anthocyanins, and carotenoids by scrounging the active oxygen intermediates produced. Several genes and transcription factors (TFs) have been involved and altered in order to fine-tune plant cellular metabolism in response to stress, either through osmotic homeostasis or damage control or repair, or by regulating gene expression levels. The cellular ionic, osmotic, and hormonal (ABA) signaling activates a number of stress-responsive genes which regulate gene expression patterns and provide osmotolerance and protection to plants as well as play a role in signal transduction for stress response (<xref ref-type="bibr" rid="B83">Lata et al., 2015</xref>; <xref ref-type="fig" rid="F1">Figure 1</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Drought stress sensing, perception, and signaling modulate transcription factors (TFs) that enhances reactive oxygen species (ROS) scavenging, protein turnover, osmotic regulation, and photosynthesis processes. ABA, abscisic acid; AP2, APETALA; Apx, ascorbate peroxidase; CAT, catalase; CDPK1, calcium-dependent protein kinase 1; DREB, dehydration responsive element binding gene; ERF, ethylene responsive factor; GPx, glutathione peroxidase; JA, jasmonic acid; LEA, late embryogenesis abundant; MAPK, mitogen-activated protein kinase; MYB, myeloblastosis oncogene; NAC, (NAM, ATAF 1/2, and CUC2) domain proteins; PP2Cs, 2C-type protein phosphatases; ROS, reactive oxygen species; SnRK2, SNF-related protein kinase 2; SOD, superoxide dismutase; TF, transcription factor; WRKY, family denoted by protein domain composed of a conserved WRKYGQK motif and a zinc-finger domain.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-13-872566-g001.tif"/>
</fig>
</sec>
<sec id="S3">
<title>Selection Criteria for Drought Tolerance in Maize</title>
<p>Because drought is a multi-dimensional trait, phenotyping for drought tolerance traits is time-consuming and resource-intensive, requiring years of testing at multiple places to accurately portray the linked features (<xref ref-type="bibr" rid="B77">Khadka et al., 2020</xref>). Under drought stress, the direct selection for yield is often inefficient (<xref ref-type="bibr" rid="B202">Ziyomo and Bernardo, 2013</xref>). The practice of drought-controlled environments and deployment of secondary traits has been effective for accurate phenotyping to improve drought tolerance related traits.</p>
<p>The indirect selection <italic>via</italic> secondary traits with higher heritability and genetic correlation becomes more effective than direct selection (<xref ref-type="bibr" rid="B202">Ziyomo and Bernardo, 2013</xref>). The traits related to early vigor, root architecture, flowering time, carbon isotope discrimination, stomatal conductance, canopy temperature, ABA concentration, osmotic adjustment and stay green, etc., are the potential suitable secondary traits to be targeted to analyze drought stress tolerance (<xref ref-type="bibr" rid="B80">Kosova et al., 2014</xref>). ASI is an excellent key trait which is widely used as selection criteria in maize for drought tolerance. Generally, male and female flowering is usually synchronized within 2&#x2013;3 days while under stress conditions it may be prolonged due to delay in silking and ultimately reproductive failure. Therefore, there is need to select the genotypes which have shorter ASI in case of drought stress (<xref ref-type="bibr" rid="B10">Araus et al., 2012</xref>). To achieve large genetic gain, the testing environment must be specifically selected. In terms of soil qualities, rainfall distribution, water distribution profiles, and possible evapotranspiration rates, the testing environment should ideally be identical to the target environment (<xref ref-type="bibr" rid="B127">Ribaut et al., 2009</xref>). The use of a controlled environment, as well as rigorous experimental designs and statistical analysis, will aid to increase the precision of genotypic means. To assess the G &#x00D7; E interactions, which is crucial for drought tolerance breeding, a multi-location evaluation is required. Recently, molecular markers related with grain yield (GY) and other traits in response to stress tolerance have been used to identify critical genes/QTLs engaged in the metabolic pathway in order to make successful selection for drought stress (<xref ref-type="bibr" rid="B183">Younis et al., 2020</xref>).</p>
</sec>
<sec id="S4">
<title>Genetic Dissection of Drought Related Traits in Maize</title>
<p>The advancement in high-throughput genotyping and the release of reference genome dataset has made a substantial increment in conducting studies to dissect economically important traits. There are mainly two methods, i.e., linkage mapping and association mapping to widely identify complex traits associated with drought tolerance. However, detecting candidate genes remain a challenge, which has led to the development of new methods such as Mendelian randomization (MR) analysis and transcriptome-wide association studies (TWAS) to evaluate expression-trait associations and identify candidate genes linked to a trait based on gene expression variation (<xref ref-type="bibr" rid="B201">Zhu et al., 2016</xref>).</p>
<sec id="S4.SS1">
<title>Rapid Trait/Quantitative Trait Locus Mapping Through Linkage Mapping</title>
<p>Identification of the QTLs is an important strategy for effective selection through MAS. Since last decades, numerous studies have been undertaken to map genes or QTL associated to drought tolerance in maize (<xref ref-type="bibr" rid="B129">Ribaut et al., 1997</xref>; <xref ref-type="bibr" rid="B160">Tuberosa et al., 2002</xref>; <xref ref-type="bibr" rid="B96">Lu et al., 2006</xref>; <xref ref-type="bibr" rid="B93">Liu et al., 2011</xref>; <xref ref-type="bibr" rid="B125">Rahman et al., 2011</xref>; <xref ref-type="bibr" rid="B200">Zhu et al., 2011</xref>; <xref ref-type="bibr" rid="B198">Zhao et al., 2018</xref>). The advanced sequencing tools have enabled the revelation of ultra-high density genetic maps to discover massive molecular markers and precisely locate the position of QTLs. There have been multiple reports of QTLs linked to distinct phenotypes in maize under drought stress across various mapping populations (<xref ref-type="table" rid="T1">Table 1</xref>). In the series, long back <xref ref-type="bibr" rid="B52">Frova et al. (1999)</xref> detected QTLs for blooming time and plant height under both well-watered (WW) and WS circumstances. <xref ref-type="bibr" rid="B115">Nikoli&#x0107; et al. (2011)</xref> identified 43 QTLs for GY and morphological characteristics on all maize chromosomes except chromosome 9. They identified five QTLs for GY, which explained 0.1&#x2013;15.86% of the variation. A total of 12 QTLs affecting leaf width were identified while 15 QTLs for plant height, ear height and only 1 QTL for leaf number was detected on chromosome 6. <xref ref-type="bibr" rid="B5">Almeida et al. (2013)</xref>, identified 83 and 62 genomic regions responsible for GY and ASI, respectively, across multiple environments and diverse genetic backgrounds. <xref ref-type="bibr" rid="B198">Zhao et al. (2018)</xref> identified 69 QTLs for plant height, ear height, ASI, ear weight, cob weight, 100-kernel weight, and ear length under both drought-stressed and control conditions, explaining 4.0&#x2013;17.2% of the phenotypic variation. Linkage mapping is a well-known method to locate QTLs but only a few QTLs are usually detected <italic>via</italic> this approach. Additionally, for QTL fine mapping and cloning of the genes present within it, generally large populations are required to get high map resolution (<xref ref-type="bibr" rid="B38">Dinka et al., 2007</xref>), making it more resource- and time-consuming process as well as the 85% of maize repetitive sequences (<xref ref-type="bibr" rid="B137">Schnable et al., 2009</xref>) further slows down the QTL fine mapping and cloning. The genetic dissection of drought tolerance in maize have been broadly reported but accounts of successful application of these identified QTL in maize improvement programs have been scarce. It is due to lack of validation of identified QTLs across genetic and environmental backgrounds, including genetic complexity, epistasis, profound QTL &#x00D7; environment interactions (QEI), population-specific QTLs, and use of agronomically poor donor lines (<xref ref-type="bibr" rid="B162">Vargas et al., 2006</xref>; <xref ref-type="bibr" rid="B93">Liu et al., 2011</xref>). Hence, meta-QTL (MQTL) analysis is adopted as another innovative tool to detect real and large effect QTL across different populations and environment. It enables the identification of genomic areas responsible for GY under both WS and WW circumstances in a variety of genotypes (<xref ref-type="bibr" rid="B149">Swamy et al., 2011</xref>). <xref ref-type="bibr" rid="B198">Zhao et al. (2018)</xref> reported 36 MQTLs in 26 populations under WW and WS conditions, as well as 39 candidate genes within those regions. <xref ref-type="bibr" rid="B5">Almeida et al. (2013)</xref> used MQTL analysis to find seven genomic regions for GY and one for ASI on chromosomes 1, 4, 5, 7, and 10, which were constitutively expressed in both WS and WW environments.</p>
<table-wrap position="float" id="T1">
<label>TABLE 1</label>
<caption><p>Genetic dissection for drought tolerance related traits in maize.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">S. No.</td>
<td valign="top" align="left">Parents</td>
<td valign="top" align="center">Population type</td>
<td valign="top" align="left">Marker</td>
<td valign="top" align="center">QTL identified</td>
<td valign="top" align="left">QTL identified per traits</td>
<td valign="top" align="left">PVE (%)</td>
<td valign="top" align="left">References</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">1.</td>
<td valign="top" align="left">SD34 &#x00D7; SD35</td>
<td valign="top" align="center">F<sub>3</sub></td>
<td valign="top" align="left">RFLP</td>
<td valign="top" align="center">11</td>
<td valign="top" align="left">Grain yield (5), anthesis silking interval (3), number of ears per plants (3)</td>
<td valign="top" align="left">9.4&#x2013;49.6</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B3">Agrama and Moussa, 1996</xref></td>
</tr>
<tr>
<td valign="top" align="left">2.</td>
<td valign="top" align="left">Ac7643 &#x00D7; Ac7729/TZSRW</td>
<td valign="top" align="center">F<sub>2</sub></td>
<td valign="top" align="left">RFLP</td>
<td valign="top" align="center">20</td>
<td valign="top" align="left">Male flowering (10), female flowering (10)</td>
<td valign="top" align="left">4.19&#x2013;12.9</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B129">Ribaut et al., 1997</xref></td>
</tr>
<tr>
<td valign="top" align="left">3.</td>
<td valign="top" align="left">Zong 3 &#x00D7; 87-1</td>
<td valign="top" align="center">RIL</td>
<td valign="top" align="left">SSR</td>
<td valign="top" align="center">17</td>
<td valign="top" align="left">Ear length (6), kernel number per row (5), 100-kernal weight (2), kernel weight per plant (4)</td>
<td valign="top" align="left">1.94&#x2013;10.32</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B96">Lu et al., 2006</xref></td>
</tr>
<tr>
<td valign="top" align="left">4.</td>
<td valign="top" align="left">Ac7643 &#x00D7; Ac7729/TZSRW</td>
<td valign="top" align="center">F<sub>2:3</sub></td>
<td valign="top" align="left">RFLP</td>
<td valign="top" align="center">6</td>
<td valign="top" align="left">Anthesis silking interval (6)</td>
<td valign="top" align="left">1.91&#x2013;7.02</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B162">Vargas et al., 2006</xref></td>
</tr>
<tr>
<td valign="top" align="left">5.</td>
<td valign="top" align="left">Zong 3 &#x00D7; 87-1</td>
<td valign="top" align="center">RIL</td>
<td valign="top" align="left">SSR</td>
<td valign="top" align="center">9</td>
<td valign="top" align="left">Relative shoot fresh weight (5), leaf temperature difference (4)</td>
<td valign="top" align="left">6.2&#x2013;13.1</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B93">Liu et al., 2011</xref></td>
</tr>
<tr>
<td valign="top" align="left">6.</td>
<td valign="top" align="left">D5 &#x00D7; 7924</td>
<td valign="top" align="center">F<sub>2:3</sub></td>
<td valign="top" align="left">SSR</td>
<td valign="top" align="center">25</td>
<td valign="top" align="left">Anthesis silking interval (4), grain yield (8), plant height (5), ear height (4), ear setting (4)</td>
<td valign="top" align="left">5.39&#x2013;15.64</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B200">Zhu et al., 2011</xref></td>
</tr>
<tr>
<td valign="top" align="left">7.</td>
<td valign="top" align="left">DTP79 &#x00D7; B73</td>
<td valign="top" align="center">F<sub>2:3</sub></td>
<td valign="top" align="left">SSR</td>
<td valign="top" align="center">21</td>
<td valign="top" align="left">Sugar concentration (1), grain yield (3), leaf abscisic acid content (1), osmotic potential (4), relative water content (1), root density (1), root dry weight (1), total biomass (1), leaf surface area (8)</td>
<td valign="top" align="left">0.2&#x2013;52.2</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B125">Rahman et al., 2011</xref></td>
</tr>
<tr>
<td valign="top" align="left">8.</td>
<td valign="top" align="left">DTP79 &#x00D7; B73</td>
<td valign="top" align="center">F2</td>
<td valign="top" align="left">SSR</td>
<td valign="top" align="center">45</td>
<td valign="top" align="left">Grain yield (5), number of rows per ear (5), number of kernels per row (7), kernel weight (5), ear length (5), ear diameter (5), kernel length (2), Kernel width (6), kernel thickness (5)</td>
<td valign="top" align="left">0.1&#x2013;32.08</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B116">Nikoli&#x0107; et al., 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left">9.</td>
<td valign="top" align="left">Langhuang &#x00D7; TS141</td>
<td valign="top" align="center">F<sub>2:3</sub></td>
<td valign="top" align="left">SSR</td>
<td valign="top" align="center">16</td>
<td valign="top" align="left">Plant height (1), ear height (4), anthesis silking interval (2), ear weight (4), cob weight (3), 100-kernal weight (1), ear length (1)</td>
<td valign="top" align="left">4&#x2013;15.77</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B198">Zhao et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left">10.</td>
<td valign="top" align="left">Chang 7-2 &#x00D7; TS141</td>
<td valign="top" align="center">F<sub>2:3</sub></td>
<td valign="top" align="left">SSR</td>
<td valign="top" align="center">17</td>
<td valign="top" align="left">Plant height (1), ear height (4), anthesis silking interval (1), ear weight (3), cob weight (3), 100-kernal weight (2), ear length (3)</td>
<td/>
<td/>
</tr>
</tbody>
</table></table-wrap>
</sec>
<sec id="S4.SS2">
<title>Genome-Wide Association Studies for Drought Stress Tolerance in Maize</title>
<p>Conventional methods captured limited allelic variation for drought tolerance traits hence, genome-wide association studies (GWAS) approach has been practiced to identify favorable alleles for drought tolerance in maize. Unlike linkage mapping, it utilizes diverse populations for QTL fine mapping by harnessing the historical recombination (<xref ref-type="bibr" rid="B135">Schaid et al., 2018</xref>). GWAS was first applied as a candidate gene association study in maize at the beginning of the 21st century (<xref ref-type="bibr" rid="B155">Thornsberry et al., 2001</xref>; <xref ref-type="bibr" rid="B17">Bel&#x00F3; et al., 2008</xref>). Presently, with the release of the reference genome (<xref ref-type="bibr" rid="B137">Schnable et al., 2009</xref>), it has been widely utilized to dissect numerous economically important traits under drought stress as mentioned in <xref ref-type="table" rid="T2">Table 2</xref>. The recent advances suggest GWAS as a prevailing tool to effectively and efficiently categorize genotype and phenotype associations. It also facilitates mapping of expression QTL (eQTL) using the transcriptomic variation, and has demonstrated the genetic basis for gene expression traits by capturing the large proportion of phenotypic variation. <xref ref-type="bibr" rid="B53">Fu et al. (2013)</xref>, analyzed the expression of total 14,375 genes with averagely more than 15% of phenotypic variance explained by each trait per eQTL. Drought being a highly complex and influential trait makes it difficult to dissect using GWAS also. Hence, researchers use the correlated metabolic traits or seedling survival rate under drought stressed conditions and a number of association studies to detect genes involved in imparting drought tolerance in maize (<xref ref-type="bibr" rid="B139">Setter et al., 2011</xref>; <xref ref-type="bibr" rid="B91">Liu et al., 2013</xref>; <xref ref-type="bibr" rid="B180">Xue et al., 2013</xref>; <xref ref-type="bibr" rid="B47">Farfan et al., 2015</xref>; <xref ref-type="bibr" rid="B104">Mao et al., 2015</xref>; <xref ref-type="bibr" rid="B194">Zhang X. et al., 2016</xref>). In this direction, several studies have been carried to identify the loci significantly associated with tolerance related traits/genes such as accumulation of carbohydrates and ABA metabolites (<xref ref-type="bibr" rid="B139">Setter et al., 2011</xref>) functional dehydration responsive element binding gene (DREB) genes and other stress related genes (<xref ref-type="bibr" rid="B91">Liu et al., 2013</xref>; <xref ref-type="bibr" rid="B154">Thirunavukkarasu et al., 2014</xref>; <xref ref-type="bibr" rid="B167">Wallace et al., 2016</xref>) under drought. <xref ref-type="bibr" rid="B171">Wang et al. (2016)</xref> identified 83 genetic variants for drought resistance and located the <italic>ZmVPP1</italic> gene through GWAS which is demonstrated to confer drought resistance.</p>
<table-wrap position="float" id="T2">
<label>TABLE 2</label>
<caption><p>Genome wide associated studies (GWAS) carried out in maize to dissect drought tolerant traits.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Population</td>
<td valign="top" align="left">Sample size</td>
<td valign="top" align="left">Traits</td>
<td valign="top" align="left">Markers</td>
<td valign="top" align="left">Marker-trait associations (MTAs) identified</td>
<td valign="top" align="left">References</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">95</td>
<td valign="top" align="left">Agronomic traits-7</td>
<td valign="top" align="left">1K</td>
<td valign="top" align="left">29 SNPs</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B61">Hao et al., 2011</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">368</td>
<td valign="top" align="left">Agronomic traits-14</td>
<td valign="top" align="left">525K</td>
<td valign="top" align="left">83 genetic variants, 42 candidate genes, and 1 peak SNP located on <italic>ZmVPP1</italic> gene</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B171">Wang et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">513</td>
<td valign="top" align="left">Agronomic traits-17</td>
<td valign="top" align="left">560K</td>
<td valign="top" align="left">1 candidate gene</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B104">Mao et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">318</td>
<td valign="top" align="left">Agronomic, metabolic, and physiological traits</td>
<td valign="top" align="left">157K</td>
<td valign="top" align="left">123 significant SNPs</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B194">Zhang X. et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">368</td>
<td valign="top" align="left">Seedling stage traits</td>
<td valign="top" align="left">525K</td>
<td valign="top" align="left">1 candidate gene</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B91">Liu et al., 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">346</td>
<td valign="top" align="left">Agronomic traits</td>
<td valign="top" align="left">60K</td>
<td valign="top" align="left">10 QTVs</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B47">Farfan et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">240</td>
<td valign="top" align="left">Agronomic traits-7</td>
<td valign="top" align="left">30K</td>
<td valign="top" align="left">61 SNPs</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B154">Thirunavukkarasu et al., 2014</xref></td>
</tr>
<tr>
<td valign="top" align="left">MAGIC</td>
<td valign="top" align="left">420</td>
<td valign="top" align="left">Seedling and germination traits</td>
<td valign="top" align="left">0.95K</td>
<td valign="top" align="left">28 significant SNPs</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B132">Rida et al., 2021</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">300</td>
<td valign="top" align="left">Grain yield and secondary traits</td>
<td valign="top" align="left">381K</td>
<td valign="top" align="left">1549 significant SNPs, 46 candidate genes</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B186">Yuan et al., 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">224</td>
<td valign="top" align="left">Agronomic traits</td>
<td valign="top" align="left">1288K</td>
<td valign="top" align="left">73,573 eQTL and 97 candidate genes</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B90">Liu et al., 2020</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">350</td>
<td valign="top" align="left">Agronomic traits-9</td>
<td valign="top" align="left">56K</td>
<td valign="top" align="left">42 SNPs</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B180">Xue et al., 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">166</td>
<td valign="top" align="left">Seedling traits</td>
<td valign="top" align="left">&#x2013;</td>
<td valign="top" align="left">1 candidate gene</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B193">Zhang et al., 2020</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">209</td>
<td valign="top" align="left">Seedling trait&#x2013;seminal root length</td>
<td valign="top" align="left">56K</td>
<td valign="top" align="left">7 candidate genes</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B58">Guo et al., 2020</xref></td>
</tr>
<tr>
<td valign="top" align="left">IAP</td>
<td valign="top" align="left">309</td>
<td valign="top" align="left">Grain yield and related traits</td>
<td valign="top" align="left">58K</td>
<td valign="top" align="left">22 significant trait&#x2013;marker associations for grain yield per plant and yield-related traits</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B101">Ma and Cao, 2021</xref></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p><italic>eQTLs, expression quantitative trait loci; IAP, inbred association panel; MAGIC, multi-parent advanced generation inter-cross; QTVs, quantitative trait variants.</italic></p></fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="S4.SS3">
<title>Omics Approaches to Dissect Drought Tolerance in Maize</title>
<p>Recent advancements in plant omics, including genomics, epigenomics, transcriptomics, proteomics, and metabolomics have facilitated decryption of the complex mechanisms of drought stress tolerance (<xref ref-type="bibr" rid="B26">Budak et al., 2015</xref>; <xref ref-type="fig" rid="F2">Figure 2</xref>). As drought tolerant related traits are complex involving several regulations at gene, post-translational modifications, and protein interactions. The omics studies help to get more valuable and quality information to develop drought-tolerant crop cultivars (<xref ref-type="bibr" rid="B178">Wu et al., 2017</xref>). It has been used to identify the genes/QTLs, gene networks, and the regulatory pathways associated with drought stress tolerance in maize (<xref ref-type="table" rid="T3">Table 3</xref>). Genomics tools have been utilized to detect gene functions and their interactions in regulatory networks. The information related to RNA (transcriptomics), protein (proteomics), and metabolite (metabolomics) can be measured to map traits of interest onto a segregating population. Utilizing omics tools, the drought responses of maize in seeds, leaves, and roots has been extensively studied. <xref ref-type="bibr" rid="B69">Huang et al. (2012)</xref> investigated into maize seed desiccation tolerance and revealed differentially expressed proteins (HSP3, EMB564, and stress response protein) that could play a role in drought resistance during embryogenesis and germination. To better understand how ABA modulates the maize proteome in response to drought, <xref ref-type="bibr" rid="B64">Hu et al. (2011</xref>, <xref ref-type="bibr" rid="B67">2012)</xref> compared the proteomic differences between the ABA-deficient maize mutant vp5 and the wild-type Vp5 under drought stress. Furthermore, several QTLs or genes associated with kernel desiccation were discovered to be involved in ABA synthesis using QTL mapping (<xref ref-type="bibr" rid="B28">Capelle et al., 2010</xref>) and oligo-microarray (<xref ref-type="bibr" rid="B99">Luo et al., 2010</xref>) analyses. Many drought tolerance related proteins or genes, such as <italic>ZmTPA</italic> (<xref ref-type="bibr" rid="B69">Huang et al., 2012</xref>), <italic>ZmRFP1</italic> (<xref ref-type="bibr" rid="B179">Xia et al., 2012</xref>), and <italic>ZmCPK4</italic> (<xref ref-type="bibr" rid="B73">Jiang et al., 2013</xref>), were also found to be induced by ABA or in an ABA-dependent manner. In the series, <xref ref-type="bibr" rid="B24">Bonhomme et al. (2012)</xref> also identified 3664 unique phosphorylation sites on 2496 proteins that influence epigenetic control, transcriptional regulation, cell cycle-dependent processes, phytohormone-mediated responses, cell cycle control, histone modification, DNA methylation, and ABA-, ethylene-, auxin-, or jasmonate-related responses under drought. <xref ref-type="bibr" rid="B18">Bene&#x0161;ov&#x00E1; et al. (2012)</xref> studied the drought-induced changes in the maize leaf proteome. <xref ref-type="bibr" rid="B190">Zhang et al. (2021)</xref> detected the role of <italic>Bx12</italic> and <italic>ZmGLK44</italic> genes in regulating metabolite biosynthesis and drought tolerance in maize while <xref ref-type="bibr" rid="B54">Gaffney et al. (2021)</xref> revealed several drought related biomarkers such as neophaseic acid, hydroxyabscisic acid, methyl itaconate, several phospholipids and lysolecithin, etc. The omics studies revealed that the proteins involved in maize drought response mainly include protective proteins (such as heat shock proteins, HSPs) (<xref ref-type="bibr" rid="B63">Hu et al., 2010</xref>; <xref ref-type="bibr" rid="B18">Bene&#x0161;ov&#x00E1; et al., 2012</xref>; <xref ref-type="bibr" rid="B172">Wang X. et al., 2019</xref>), stress response-related proteins (such as NBS LRR resistance-like protein) (<xref ref-type="bibr" rid="B64">Hu et al., 2011</xref>), 14-3-3-like proteins (<xref ref-type="bibr" rid="B88">Li et al., 2009</xref>; <xref ref-type="bibr" rid="B69">Huang et al., 2012</xref>), late embryogenesis abundant proteins (LEAs) (<xref ref-type="bibr" rid="B69">Huang et al., 2012</xref>; <xref ref-type="bibr" rid="B172">Wang X. et al., 2019</xref>), phytohormone-related proteins, and signaling proteins (such as auxin repressed protein and serine/threonine protein kinase) (<xref ref-type="bibr" rid="B99">Luo et al., 2010</xref>; <xref ref-type="bibr" rid="B64">Hu et al., 2011</xref>; <xref ref-type="bibr" rid="B24">Bonhomme et al., 2012</xref>; <xref ref-type="bibr" rid="B40">Dong et al., 2020</xref>; <xref ref-type="bibr" rid="B87">Li H. et al., 2021</xref>). Most of the omics studies are carried out in laboratory conditions only but there are huge differences in protein markers involved in similar metabolic pathways under field and lab conditions. Furthermore, the majority of stress treatments did not take into account the drought responses mechanism of adaptation, injury, and recovery in crops which is a major concern in such experimental designs (<xref ref-type="bibr" rid="B100">Lyon et al., 2016</xref>). As a result, many studies contribute only little to knowledge beyond adding some species to the list of previously discovered stress responsive proteins. Therefore, due to a lack of system biology data from field trials and huge G &#x00D7; E interactions in complex and unknown ways, the systematic mechanism of drought responses in crops and its application in drought tolerance development remain mainly unknown. Omics have been a valuable approach to discover the gene expressions, TFs, proteins, and pathways involved to improve drought tolerance. But the huge omics data developed for any crop drought tolerance has yet to be practically utilized at field level from laboratory. Hence, there is need to investigate the omics related data for drought responses under field conditions.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>System biology-based omics approaches to strategies future basic research to decipher and develop drought tolerance maize cultivars.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-13-872566-g002.tif"/>
</fig>
<table-wrap position="float" id="T3">
<label>TABLE 3</label>
<caption><p>List of studies using transcriptomics/proteomics/metabolomics approaches to unravel drought stress tolerance mechanism in maize.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Genotype</td>
<td valign="top" align="left">Tissue and developmental stage</td>
<td valign="top" align="left">Technique</td>
<td valign="top" align="left">Comments</td>
<td valign="top" align="left">References</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">209 maize inbred lines</td>
<td valign="top" align="left">Seminal roots</td>
<td valign="top" align="left">RNA-seq, qRT-PCR</td>
<td valign="top" align="left">343 differentially expressed genes (DEGs) were identified</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B58">Guo et al., 2020</xref></td>
</tr>
<tr>
<td valign="top" align="left">Two maize RILs</td>
<td valign="top" align="left">Leaves</td>
<td valign="top" align="left">qRT-PCR</td>
<td valign="top" align="left">Total 613 DEGs identified at different stages in drought tolerant RIL in addition the stable expression observed of cell cycle genes, ABA-, and programmed cell death-related genes</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B108">Min et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left">YE8112 (tolerant) and MO17 (sensitive)</td>
<td valign="top" align="left">Three-leaf-stage seedlings</td>
<td valign="top" align="left">RNA-seq, qRT-PCR</td>
<td valign="top" align="left">Upregulated LEA proteins, heat stress transcriptional factor B-2b, MYB-related TF96, pyrophosphate fructose-6-phosphate 1-phosphotransferase subunit alpha 1 (PFP ALPHA 1), chaperons, etc.</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B188">Zenda et al., 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left">287M (tolerant), 753F (sensitive)</td>
<td valign="top" align="left">Four-leaf stage</td>
<td valign="top" align="left">RNA-seq</td>
<td valign="top" align="left">Upregulated carotenoid cleavage dioxygenase 8, MYB-IF35, WRKY70, WRKY35, and ZFP2</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B199">Zheng et al., 2020</xref></td>
</tr>
<tr>
<td valign="top" align="left">Zhongdi 175</td>
<td valign="top" align="left">Seedling stage</td>
<td valign="top" align="left">RNA-seq, qRT-PCR</td>
<td valign="top" align="left">7837 DEGs identified for drought tolerance including for sucrose metabolism and cell growth, MYB-flavonoid or MYB-bHLH-flavonoid biosynthetic pathways, ARF-Aux/IAA, bZIP/NAC-ABA, and GRAS-GA/auxin pathways</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B87">Li H. et al., 2021</xref></td>
</tr>
<tr>
<td valign="top" align="left">Zhengdan 958</td>
<td valign="top" align="left">Eight-leaf stage</td>
<td valign="top" align="left">Multiplex iTRAQ and LC-MS/MS</td>
<td valign="top" align="left">Upregulated superoxide dismutase, ascorbate peroxidase, and glutathione reductase enzymes activity</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B197">Zhao et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left">ND476 (tolerant), ZX978 (sensitive)</td>
<td valign="top" align="left">Kernel</td>
<td valign="top" align="left">iTRAQ, tandem mass spectrometry (MS/MS), qRT-PCR</td>
<td valign="top" align="left">Upregulated oxidoreductase, peroxidase and hydrolytic enzyme activities, and elevated expression of stress defense proteins</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B40">Dong et al., 2020</xref></td>
</tr>
<tr>
<td valign="top" align="left">YE8112 (tolerant), MO17 (sensitive)</td>
<td valign="top" align="left">Kernel filling stage</td>
<td valign="top" align="left">iTRAQ Analysis, Strong Cation Exchange (SCX) and LC-MS/MS, qRT-PCR</td>
<td valign="top" align="left">11 up-regulated proteins under drought stress including HSPs, chaperons, late embryogenesis abundant (LEA) protein, defensin-like protein, and catalase</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B172">Wang X. et al., 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left">YE8112 (tolerant), MO17 (sensitive)</td>
<td valign="top" align="left">Seedling stage</td>
<td valign="top" align="left">iTRAQ Analysis, qRT-PCR</td>
<td valign="top" align="left">Total 721 differentially abundant proteins (DAPs) identified, up-regulated chlorophyll <italic>a</italic>&#x2013;<italic>b</italic> binding proteins, lipid metabolism related proteins, abscisic acid stress ripening 1 (ASR1) protein</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B187">Zenda et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left">B73</td>
<td valign="top" align="left">Leaves at seedling stage</td>
<td valign="top" align="left">iTRAQ, qRT-PCR, antioxidants assays</td>
<td valign="top" align="left">200 DAPS involved in drought signal transduction, ROS scavenging, osmotic regulation, protein synthesis, cell structure modulation, as well as other metabolisms were identified</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B74">Jiang et al., 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left">Chang 7-2 (tolerant), TS141 (sensitive)</td>
<td valign="top" align="left">Three-leaf stage and roots at seedling</td>
<td valign="top" align="left">iTRAQ with LC-MS/MS, qRT-PCR</td>
<td valign="top" align="left">1243 significantly differentially expressed proteins associated with associated with ribosome pathway, glycolysis/gluconeogenesis pathway, and amino sugar, and nucleotide sugar metabolism were identified</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B189">Zeng et al., 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left">10 maize hybrids</td>
<td valign="top" align="left">Leaves</td>
<td valign="top" align="left">Gas chromatography-mass spectroscopy</td>
<td valign="top" align="left">AA-glycine and myoinositol key metabolite for drought tolerance</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B119">Obata et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left">DY 606</td>
<td valign="top" align="left">Leaves</td>
<td valign="top" align="left"><sup>1</sup>H NMR spectroscopy</td>
<td valign="top" align="left">AA-alanine, lipids-triacylglyceride and OM: malate, glutamate, formate involved as key metabolites</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B148">Sun et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left">385 inbred</td>
<td valign="top" align="left">Leaves</td>
<td valign="top" align="left">LC-MS</td>
<td valign="top" align="left">Detected <italic>Bx12</italic> and <italic>ZmGLK44</italic> gene&#x2019;s role in regulating metabolite biosynthesis and drought tolerance in maize</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B190">Zhang et al., 2021</xref></td>
</tr>
<tr>
<td valign="top" align="left">B73</td>
<td valign="top" align="left">Whole plant tissues</td>
<td valign="top" align="left">LC-MS, high-resolution mass spectrometry</td>
<td valign="top" align="left">Neophaseic acid, hydroxyabscisic acid, methyl itaconate, several phospholipids, and lysolecithin detected as drought related biomarkers</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B54">Gaffney et al., 2021</xref></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p><italic>AA, amino acid; 1H-NMR, nuclear magnetic resonance; iTRAQ, isobaric tags for relative and absolute quantitation; LC-MS, liquid chromatography&#x2013;mass spectrometry; OM, other metabolites; qRT-PCR, quantitative real time polymerase chain reaction.</italic></p></fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="S4.SS4">
<title>Phenomics: High-Throughput and Precision Phenotyping for Drought Stress Traits</title>
<p>Phenomics is a new transdisciplinary area for obtaining extensive measurements of large number of plants that result in phenotypic variations over the course of their life span (<xref ref-type="bibr" rid="B43">Egea-Cortines and Doonan, 2018</xref>). High-throughput phenotyping (HTP) enables accelerated accurate, labor-, and cost-effective phenotyping of complex morpho-physiological traits to detect drought stress at preliminary stage (<xref ref-type="bibr" rid="B77">Khadka et al., 2020</xref>). According to <xref ref-type="bibr" rid="B182">Yang et al. (2020)</xref>, advanced plant phenomics will allow for more efficient use of genetic data, leading to novel gene discovery and improved crop output and quality in the field. To make genetic progress for drought tolerance, managed stress environments (MSEs) are required, in which the severity and timing of drought stress are controlled in a way that is relevant to target environment conditions. In the absence of rain, precise water management allows stress intensity to be adjusted, maximizing the expression of genetic variability for essential secondary traits and repeating the stress pattern, which is targeted at appropriate growth phases (<xref ref-type="bibr" rid="B174">White et al., 2012</xref>).</p>
<p>The phenotypes under drought stress are dynamic and clearly defined by a series of response curves to environmental stimuli (<xref ref-type="bibr" rid="B151">Tardieu, 2012</xref>). The HTP systems enable the smooth running and standardization of reliable phenotypic data in glasshouse conditions by automating procedures (<xref ref-type="bibr" rid="B85">Li D. et al., 2021</xref>). The phenomics tools such as digital imaging, robotics and computing equipment facilitate uninterrupted measurements of thousands of plants automatically and non-destructively (<xref ref-type="bibr" rid="B158">Tuberosa, 2012</xref>; <xref ref-type="bibr" rid="B45">Fahlgren et al., 2015</xref>). For various traits such as canopy features (<xref ref-type="bibr" rid="B49">Fiorani et al., 2012</xref>), root architectural traits (<xref ref-type="bibr" rid="B23">Blouin et al., 2007</xref>), digital imaging can be used as it provides inexpensive and rapid analysis of plant features (<xref ref-type="bibr" rid="B131">Richardson et al., 2018</xref>). In addition, it allows to accurately analyze the root growth process at higher resolutions (<xref ref-type="bibr" rid="B11">Armengaud et al., 2009</xref>; <xref ref-type="bibr" rid="B57">Guimar&#x00E3;es et al., 2017</xref>). Through remote-sensing <italic>via</italic> near-infrared spectroscopy and spectral reflectance, integrative traits should be collected with high temporal resolution (<xref ref-type="bibr" rid="B14">Bai et al., 2019</xref>). It helps to quantify the agronomic parameters like leaf area, yield, crop cover, biomass, etc., with evolving understanding about leaf reflectance, leaf emittance, leaf thickness, canopy shape, leaf age, nutrient status and, importantly, water status (<xref ref-type="bibr" rid="B82">Kumar S. et al., 2022</xref>). <xref ref-type="bibr" rid="B35">Dar et al. (2021)</xref> utilized HTP technique to identify drought tolerant maize lines possessing favorable traits for drought stress tolerance. Under stress, the data revealed a robust link between canopy temperature and above-ground biomass. Recent improvements in low-cost field HTPPs, high-capacity data recording, scoring, and processing, and non-invasive remote sensing approaches, together with automated environmental data gathering, aid in evaluating maize yield and other quality characteristics in drought-stricken conditions. The study of essential plant components and traits may supplement direct phenotyping in the field and advancements in user-friendly data management strategies with a more powerful interpretation of results, which have expanded the usage of field HTPPs for bumper maize production. As a result, enhancing the efficiency of crop genetic modification to fulfill the needs of future generations&#x2019; foods is based on the principles and comprehensive set of references suitable for phenotyping practices management. However, the installation of phenomics facility is highly expensive and still in infancy stage in developing countries.</p>
</sec>
<sec id="S4.SS5">
<title>Epigenetic Modifications to Improve Drought Tolerance in Maize</title>
<p>Epigenetics has emerged as a novel research area to detect the biochemical changes in DNA that modulate gene expression without any change in the DNA sequence. Epigenetic changes are particularly common in response to environmental changes such as drought, and these changes can be long-lasting being heritable and through plant stress memory.</p>
<p>Epigenetic modifications <italic>via</italic> small RNA (miRNA or siRNA) for post-transcriptional gene silencing, DNA methylation, and histone changes affect gene activity and play an important role in gene expression to cope with environmental stresses (<xref ref-type="bibr" rid="B153">Thiebaut et al., 2019</xref>; <xref ref-type="bibr" rid="B176">Wojtyla et al., 2020</xref>). These modifications improve stress resistance in plants by upregulating and downregulating sRNAs (miRNAs, siRNAS) to downregulate negative regulators, upregulate positive regulators, and regulate plant hormones, reactive oxygen species (ROS), and transcriptional factors (<xref ref-type="bibr" rid="B15">Banerjee et al., 2017</xref>). Many advances have been made in the quantification of epigenetic variations and their impact on plant growth and development, resulting in increased yield and quality (<xref ref-type="bibr" rid="B34">Cortijo et al., 2014</xref>). Post-translational and post-transcriptional changes such as phosphorylation, ubiquitination, sumoylation, DNA methylation, RNA interference, histone posttranslational modifications, functional proteins, and chromatin modifications are examples of epigenetic regulation (<xref ref-type="bibr" rid="B153">Thiebaut et al., 2019</xref>). Using traditional breeding principles, the selection of epigenetic phenotypes can be beneficial for breeding stress-tolerant plants at various levels (metabolites, simple traits, and polygenic). Regulatory and epigenetic factors play an important role in gene expression and multi-trait development in selection process for genotype yield and quality (<xref ref-type="bibr" rid="B163">Verkest et al., 2015</xref>). Epigenetic changes can alter gene transcription and are an important mechanism for controlling gene expression during development in response to environmental stimulation. Basic mechanistic studies of these modifications will provide proper insight into the various genes and specific regions within them that are responsible for adapting to different abiotic stresses, resulting in a better understanding of the pathway to be targeted for crop improvement (<xref ref-type="bibr" rid="B147">Sun et al., 2021</xref>).</p>
<p>DNA methylation is a critical epigenetic modification that has been linked to plant development and stress responses (<xref ref-type="bibr" rid="B68">Huang et al., 2019</xref>). Various enzymes (DNA methyltransferase) that are targeted by different plant regulatory pathway systems participate in the process of catalyzing DNA methylation for a better and faster response to biotic and abiotic stresses (<xref ref-type="bibr" rid="B191">Zhang et al., 2018</xref>). <xref ref-type="bibr" rid="B169">Wang et al. (2021)</xref> generated MeDIP-Seq data to profile the DNA methylation map of four inbred lines and results showed that there were distinct drought stress responses of DNA methylation among drought-tolerant and drought-sensitive inbred lines. It was also observed that DNA methylation is involved in not only gene expression inhibition but also alternative splicing in response to drought stress. Under water stress, there was an increase in DNA methylation levels and the methylome of drought-tolerant inbred lines was much more stable than those of drought-sensitive inbred lines. Taken together, our findings may aid in deciphering the roles of DNA methylation in plant drought tolerance variations and emphasizing its role in alternative splicing.</p>
</sec>
</sec>
<sec id="S5">
<title>Breeding for Drought Stress Tolerance in Maize</title>
<sec id="S5.SS1">
<title>Conventional Breeding for Drought Stress Tolerance</title>
<p>It has been really challenging to improve drought tolerance through conventional breeding. Various drought tolerance cultivars such as Oh605, 16 tropically adapted inbred lines (TZEI 1 to TZEI 16), ND2005 and ND2006, TZE-W Pop DT STR C4, and TZE-Y Pop DT STR C4 have been successfully developed using conventional breeding methods such as recurrent selection, inbreeding, pedigree breeding, backcrossing, and hybridization (<xref ref-type="bibr" rid="B12">Ashraf, 2010</xref>). The success of conventional breeding depends on the germplasm diversity availability and identification of a suitable donor for tolerant genes. Hence, various germplasm sources tolerant to drought stress have been identified in maize (<xref ref-type="bibr" rid="B27">Cairns et al., 2013</xref>). However, the implementation of conventional breeding is highly time-consuming and cost- and labor-intensive approach. It requires repetitive number of selection and breeding cycles. In addition, it also transfers some undesirable genes causing linkage drag. The multiple genes controlling drought tolerance and their strong interactions with yield related traits make the conventional breeding methods limitedly accessible (<xref ref-type="bibr" rid="B4">Ahmar et al., 2020</xref>). Hence, now with progressions in next-generation sequencing, a number of advanced approaches have been implemented successfully to tailor maize for enhanced drought tolerance.</p>
</sec>
<sec id="S5.SS2">
<title>Molecular Breeding Approaches for Drought Stress Tolerance</title>
<p>The application of molecular markers has improved the efficiency of breeding drought tolerant crops significantly (<xref ref-type="bibr" rid="B9">Andjelkovi&#x0107; and Ignjatovi&#x0107;-Mici&#x0107;, 2011</xref>; <xref ref-type="bibr" rid="B110">Mwamahonje et al., 2021</xref>). Unlike conventional methods, genomics provides broader chances for dissecting quantitative traits into specific genetic determinants, paving the door for MAS and, eventually, cloning QTLs and manipulating them directly through genetic engineering (<xref ref-type="bibr" rid="B159">Tuberosa and Salvi, 2006</xref>; <xref ref-type="bibr" rid="B120">Oladosu et al., 2019</xref>).</p>
<p>Advanced genomics-assisted breeding techniques including MAS, marker-assisted back crossing (MABC), marker-assisted recurrent selection (MARS), and genomic selection (GS) have opened up new possibilities for drought tolerance enhancement. Under WS circumstances, <xref ref-type="bibr" rid="B130">Ribaut and Ragot (2007)</xref> employed MABC to introduce five QTLs associated to GY and flowering traits into a drought-prone maize line, observing increased grain and lower ASI. Only large effect QTLs that have been identified and validated across a wide range of genetic backgrounds are introduced into an elite variety through MABC (<xref ref-type="bibr" rid="B19">Bernardo, 2008</xref>). Unlike MABC, MARS uses a subset of markers that are significantly related with target traits to accumulate a high number of medium effect QTLs in a given population (<xref ref-type="bibr" rid="B19">Bernardo, 2008</xref>; <xref ref-type="bibr" rid="B128">Ribaut et al., 2010</xref>). <xref ref-type="bibr" rid="B21">Beyene et al. (2016)</xref> studied the genetic gains in maize GY using 10 biparental MARS populations and demonstrated its potential in increasing genetic gain under WS conditions. Another marker-based approach, i.e., GS utilizes all available significant or insignificant marker information simultaneously to envisage the genetic value of progenies for selection (<xref ref-type="bibr" rid="B95">Lorenz, 2013</xref>). Using GS, <xref ref-type="bibr" rid="B20">Beyene et al. (2015)</xref> assessed genetic gains in GY from eight bi-parental maize populations under managed drought stress environments. The study showed that GS is a more effective method for enhancing genetic gains under drought stress in tropical maize than pedigree-based traditional phenotypic selection. Through &#x201C;breeding by design&#x201D; strategy, all identified QTLs and trans genes relevant to yield and drought tolerance traits can be accumulated into elite genotypes. Breeders would be able to strategize new ideotype crops by analyzing allelic variations and the genetic basis of secondary traits involved in regulating drought tolerance.</p>
<p>The cloning of genes associated to drought tolerant QTLs is another important application of molecular breeding. By mapping of known stress responsive genes, different techniques are being employed to clone candidate genes (<xref ref-type="bibr" rid="B134">Salvi and Tuberosa, 2005</xref>; <xref ref-type="bibr" rid="B156">Tondelli et al., 2006</xref>). <xref ref-type="bibr" rid="B106">Masle et al. (2005)</xref>, for example, cloned the ERECTA gene in <italic>Arabidopsis thaliana</italic>, which is a DNA sequence that is beyond a QTL for transpiration efficiency. However, there is no report in the literature on the cloning of genes underlying QTLs in any crop species, or determining a suitable QTL for gene cloning is still difficult (<xref ref-type="bibr" rid="B66">Hu et al., 2021</xref>). By compiling all of the aforementioned data, it is clear that molecular breeding research has not progressed beyond the detection of a specific trait under drought stressed conditions. However, to evaluate whether QTLs found in a mapping population can improve drought tolerance in high yielding elite genotypes after introduction remains a difficult task for researchers. Although the application of MAS appears to be more promising and meaningful but its contribution to the development of drought-tolerant cultivars has been modest so far with only a few successful studies available (<xref ref-type="bibr" rid="B196">Zhao et al., 2008</xref>; <xref ref-type="bibr" rid="B21">Beyene et al., 2016</xref>).</p>
</sec>
<sec id="S5.SS3">
<title>Transgenic Approaches to Develop Drought Tolerance in Maize</title>
<p>The rapid advancement in biotechnology with genome sequencing has resulted in a diverse set of techniques for manipulating and identifying genes of interest involved in certain processes, such as drought responses. The current research on engineering drought-tolerant plants is primarily based on the transferring of one or more genes involved in signaling and regulatory pathways, or that encode enzymes involved in pathways leading to the synthesis of functional and structural protectants like osmolytes and antioxidants or stress tolerance conferring proteins (<xref ref-type="bibr" rid="B165">Vinocur and Altman, 2005</xref>; <xref ref-type="bibr" rid="B79">Khan et al., 2019</xref>). Genetic engineering facilitates wider range of solutions to improve drought tolerance more rapidly with reduced time (<xref ref-type="bibr" rid="B105">Martignago et al., 2020</xref>). Through genetic engineering techniques, a number of natural and synthetic genes and TFs have been incorporated into maize to enhance drought tolerance (<xref ref-type="bibr" rid="B122">Parmar et al., 2017</xref>; <xref ref-type="table" rid="T4">Table 4</xref>). A large number of drought responsive genes and TFs have been identified such as <italic>TsVP</italic> and <italic>BetA</italic> from <italic>Thellungiella halophila</italic> and <italic>Escherichia coli</italic>, <italic>ZmPLC1</italic>, <italic>ZmVPP1</italic>, <italic>ZmTIP1</italic>, and <italic>ZmNAC111</italic> from maize (<xref ref-type="bibr" rid="B168">Wang et al., 2008</xref>, <xref ref-type="bibr" rid="B171">2016</xref>; <xref ref-type="bibr" rid="B104">Mao et al., 2015</xref>; <xref ref-type="bibr" rid="B193">Zhang et al., 2020</xref>), <italic>SbER1&#x2013;1</italic> and <italic>SbER2&#x2013;1</italic> from sorghum (<xref ref-type="bibr" rid="B86">Li et al., 2019</xref>), <italic>LOS5</italic> from <italic>Arabidopsis</italic> (<xref ref-type="bibr" rid="B98">Lu et al., 2013</xref>), <italic>TsCBF1</italic> from <italic>T. halophila</italic> (<xref ref-type="bibr" rid="B192">Zhang et al., 2010</xref>), and many more, whose overexpression result in drought tolerance development in maize <italic>via</italic> transgenic approach (<xref ref-type="bibr" rid="B72">Jia et al., 2020</xref>; <xref ref-type="bibr" rid="B109">Muppala et al., 2021</xref>; <xref ref-type="bibr" rid="B185">Yu H. et al., 2021</xref>). Generally, the DREB proteins, i.e., a subfamily of APETALA 2/ethylene-responsive element binding factor (AP2/ERF) family and mitogen activated proteins are targeted for maize drought tolerance (<xref ref-type="bibr" rid="B22">Bidhan et al., 2011</xref>). <xref ref-type="bibr" rid="B143">Shou et al. (2004)</xref> incorporated Nicotiana Protease Kinase (NPK1) <italic>via</italic> genetic transformation to develop transgenic maize which induces HSPs and glutathione-<italic>S</italic>-transferases (GSTs) to protect photosynthetic machinery during drought stress conditions. <xref ref-type="bibr" rid="B124">Quan et al. (2004)</xref> transformed an elite maize inbred line DH4866 with a key <italic>E. coli</italic> enzyme encoding choline dehydrogenase, which has been linked to maize abiotic stress. At the germination and young seedling stage, transgenic maize plants accumulated more glycine betaine and exhibited improved GY and drought resistance than non-transgenic plants. <xref ref-type="bibr" rid="B6">Amara et al. (2013)</xref> improved drought tolerance in transgenic maize plants by over-expressing the group LEA Rab28 candidate gene, which leads to increased Rab28 protein accumulation and stability and improved water stress tolerance. <xref ref-type="bibr" rid="B62">He et al. (2018)</xref> reported that the overexpression of <italic>ZmPYL3</italic>, <italic>ZmPYL9</italic>, <italic>ZmPYL10</italic>, and <italic>ZmPYL13</italic> genes played important role to impart drought resistance in transgenic plants by enhancing ABA signaling, proline, and other drought related marker genes. A transgenic gene-silencing approach was used to modulate the ethylene biosynthesis in maize and determine its effect on GY under drought stress. The results showed that there was significantly higher GY, decreased and an increase in kernel number/ear in transgene-positive events compared to nulls (<xref ref-type="bibr" rid="B59">Habben et al., 2014</xref>). Similarly, <xref ref-type="bibr" rid="B92">Liu et al. (2015)</xref> cloned maize <italic>ZmSDD1</italic> gene and dissected its functions and performance to drought stress. The over-expression of <italic>ZmSDD1</italic> in transformed maize lines converts these lines in drought-resistant lines. The expression level of <italic>ZmSDD1</italic> in transgenic plants was 6.68 times higher than that in wild types with reduction of stomatal density and 80% higher survival rate than that of wild type. In this direction, Monsanto company in alliance with BASF, developed the first biotechnology-derived drought tolerant maize variety, i.e., MON 87460 expressing bacterial cold shock protein B (CspB) and obtained 6% increased GY under drought conditions (<xref ref-type="bibr" rid="B114">Nemali et al., 2015</xref>). In maize ZmNF-YB2, the homolog of AtNF-YB, was found to be constitutively expressed in transgenic plants and outperformed <italic>Arabidopsis</italic> NF-YBs in terms of survival. Transgenic plants were also drought resistant in field trials, due to a number of higher stomatal conductance, cooler leaf temperatures, higher chlorophyll content, and delayed onset of senescence (<xref ref-type="bibr" rid="B113">Nelson et al., 2007</xref>). Recently, <xref ref-type="bibr" rid="B109">Muppala et al. (2021)</xref> has introduced <italic>rpk and nced</italic> genes into elite maize inbred lines from LeaP and SalT promoters to develop stable transgenic lines. The results showed more accumulation of ABA in transgenic plants and significant survival capacity over the control plants under stress. The improvement of drought stress tolerance is a multi-tool approach by integrating breeding, biotechnological and agronomic practices. Hence, in an attempt to develop drought tolerant maize cultivars, the research conducted utilizing transgenics declares it as one of the potential tools to manage drought stress associated risks.</p>
<table-wrap position="float" id="T4">
<label>TABLE 4</label>
<caption><p>Application of transgenic and genome editing tools to improve drought tolerance in maize.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Targeted genes</td>
<td valign="top" align="left">Source organism</td>
<td valign="top" align="left">Gene expression</td>
<td valign="top" align="left">Traits</td>
<td valign="top" align="left">Status</td>
<td valign="top" align="left">References</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" colspan="6"><bold>Transgenics</bold></td>
</tr>
<tr>
<td valign="top" align="left"><italic>CspA</italic>, <italic>CspB</italic></td>
<td valign="top" align="left"><italic>Escherichia coli</italic></td>
<td valign="top" align="left">Overexpression</td>
<td valign="top" align="left">High chlorophyll content, improved photosynthetic rate, and reduced leaf area during vegetative growth</td>
<td valign="top" align="left">Best performing lines commercialized as Genuity DroughtGard</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B114">Nemali et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>NF-YB1</italic>, <italic>NF-YB2</italic></td>
<td valign="top" align="left"><italic>Arabidopsis</italic>, maize</td>
<td valign="top" align="left">Overexpression</td>
<td valign="top" align="left">Higher stomatal conductance and chlorophyll content, and delayed senescence</td>
<td valign="top" align="left">50% yield increment under severe drought conditions. These lines not assessed in the field and never introduced to the market</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B113">Nelson et al., 2007</xref></td>
</tr>
<tr>
<td valign="top" align="left">TPS/TPP (T6P phosphatase, TPP)</td>
<td valign="top" align="left">Rice</td>
<td valign="top" align="left">Overexpression</td>
<td valign="top" align="left">Altered carbon allocation and improved yield in both well-watered and water-limited field trials</td>
<td valign="top" align="left">Drought tolerance effects assessed in extensive field trials with yield improvement under severe drought</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B118">Nuccio et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>TsVP</italic></td>
<td valign="top" align="left"><italic>Thellungiella halophila</italic></td>
<td valign="top" align="left">Constitutive expression</td>
<td valign="top" align="left">Increased total soluble sugars and proline under osmotic stress. Improvements in dehydration tolerance</td>
<td valign="top" align="left">In a small-scale field experiment, these transgenic plants showed a higher yield under drought conditions than the control plants</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B84">Li et al., 2008</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Zm-ARGOS1 a</italic>, <italic>Zm-ARGOS8</italic></td>
<td valign="top" align="left">Maize</td>
<td valign="top" align="left">Overexpression</td>
<td valign="top" align="left">Improve dehydration avoidance in both plant species by reducing ethylene sensitivity</td>
<td valign="top" align="left">Reduced ethylene sensitivity and enhanced maize yields under both drought stress and well-watered conditions</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B142">Shi et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>nced</italic> and <italic>rpk</italic></td>
<td valign="top" align="left">Maize</td>
<td valign="top" align="left">Overexpression</td>
<td valign="top" align="left">Play key roles in the abscisic acid pathway and upstream component in ABA signaling</td>
<td valign="top" align="left">Introducing two genes involved in the ABA pathway and developed stable transgenic plants with desired characters</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B109">Muppala et al., 2021</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>sod</italic>, <italic>apx</italic>, <italic>gr</italic>, <italic>dhar</italic>, and <italic>mdhar</italic></td>
<td valign="top" align="left">&#x2013;</td>
<td valign="top" align="left">Overexpression</td>
<td valign="top" align="left">Play key roles in the ascorbate&#x2013;glutathione pathway</td>
<td valign="top" align="left">Fertile putative transgenic maize plants produced</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B146">Sreenu et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left" colspan="6"><bold>Genome editing</bold></td>
</tr>
<tr>
<td valign="top" align="left"><italic>ARGOS8</italic></td>
<td valign="top" align="left"><italic>Arabidopsis</italic></td>
<td valign="top" align="left">Constitutive expression CRISPR/Cas9</td>
<td valign="top" align="left">Improved drought tolerance in a field trial under stress conditions without affecting yield in well-watered control experiments</td>
<td valign="top" align="left">Commercialization of these lines is under evaluation</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B141">Shi et al., 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>ahb2</italic></td>
<td valign="top" align="left">Maize</td>
<td valign="top" align="left">Gene knockout</td>
<td valign="top" align="left">Quicker stomatal closure in response to dehydration stress</td>
<td valign="top" align="left">Three independent homozygous lines (i1, d2, and d35) tolerant to drought stress obtained</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B90">Liu et al., 2020</xref></td>
</tr>
</tbody>
</table></table-wrap>
</sec>
<sec id="S5.SS4">
<title>Genome Editing: Recent Progress to Improve Drought Tolerance in Maize</title>
<p>Recently, the genome editing technologies have emerged that enable rapid and precise manipulation of DNA sequences by editing major genes for development of drought-tolerant germplasm. The genome editing tools such as mega nucleases, zinc-finger nucleases (ZFN), transcription activator-like effector nucleases (TALEN), and the clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated nuclease protein 9 (Cas9) system, have provided targeted gene modification in plants (<xref ref-type="bibr" rid="B89">Li et al., 2013</xref>; <xref ref-type="bibr" rid="B30">&#x010C;erm&#x00E1;k et al., 2015</xref>; <xref ref-type="bibr" rid="B78">Khalil, 2020</xref>). The CRISPR-Cas9 system has revolutionized both basic and applied research of plants and animals as a powerful genome editing tool (<xref ref-type="bibr" rid="B140">Shan et al., 2013</xref>; <xref ref-type="bibr" rid="B170">Wang T. et al., 2019</xref>). The approach of genome editing has been widely adopted in many plant species, such as <italic>Arabidopsis</italic> (<xref ref-type="bibr" rid="B48">Fauser et al., 2014</xref>), rice (<xref ref-type="bibr" rid="B65">Hu et al., 2016</xref>), wheat (<xref ref-type="bibr" rid="B195">Zhang Y. et al., 2016</xref>), potato (<xref ref-type="bibr" rid="B8">Andersson et al., 2018</xref>), tomato, and many fruit crops (<xref ref-type="bibr" rid="B170">Wang T. et al., 2019</xref>) to improve various traits like yield improvement, biotic and abiotic stress management. CRISPR/Cas9 based genome editing has been applied to increase crop disease resistance and also to improve tolerance to major abiotic stresses like drought and salinity (<xref ref-type="bibr" rid="B170">Wang T. et al., 2019</xref>). It helps to identify the important role/function of genes under different biotic and abiotic stresses through creating the particular gene knock-out or knock-down. In maize, recently a few studies have been carried out to improve drought tolerance by utilizing CRISPR-Cas technology (<xref ref-type="table" rid="T4">Table 4</xref>). <xref ref-type="bibr" rid="B141">Shi et al. (2017)</xref> employed a CRISPR-Cas aided advanced breeding technology to generate novel variants of maize <italic>ARGOS8</italic> which is a negative regulator of ethylene responses. The results showed that in comparison to wild types, the <italic>ARGOS8</italic> variants increased GY under drought stressed conditions. It demonstrated that modifying the expression patterns of a single native gene responsible for drought tolerance under stressed conditions can maintain yield potential. Plants derived from this method could be classified as non-GM crops. To engineer drought tolerance, multiple genes associated with complex metabolic pathways needs to be manipulated. As a result, the practical realization of drought tolerance is dependent on the use of molecular techniques capable of manipulating multiple genes at the same time. Recently, using Golden Gate cloning or the Gibson assembly method, multiple sgRNAs driven by independent promoters have been multiplexed into a single CRISPR/Cas9 expression vector (<xref ref-type="bibr" rid="B144">Silva and Patron, 2017</xref>). In combination with haploid induction, genome editing will be another important development in improving the breeding speed of stress tolerant maize variants in the future. In this method, the HI-Edit (haploid induction editing technology) or IMGE (haploid-inducer mediated genome editing), i.e., the haploid inducer line is also the editor line. Following the HI inducer cross, the desired genome edit occurs in the zygote, which is followed by a uniparental genome elimination (haploidization) (<xref ref-type="bibr" rid="B103">Malenica et al., 2021</xref>). This strategy generates edits to elite breeding lines faster, avoiding selfing or backcrossing if necessary to eliminate the transgene encoding the editing machinery. CRISPR-edited crops, on the other hand, confront socio-political obstacles, such as public acceptability and government regulation (<xref ref-type="bibr" rid="B136">Scheben and Edwards, 2017</xref>).</p>
</sec>
</sec>
<sec id="S6">
<title>Progress to Develop Drought Tolerant Maize Cultivars: Mega Projects</title>
<p>There are a number of international and national level initiatives undertaken to develop drought tolerant maize cultivars such as drought tolerant maize for Africa (DTMA), water efficient maize for Africa (WEMA), and affordable, accessible Asian (AAA) drought tolerance maize project. Under DTMA project nearly 160 drought tolerant maize varieties superior to the commercial maize varieties have been released between 2007 and 2013. These cultivars have been tested in experimental trails at farmers&#x2019; fields, and disseminated among farmers in 13 African countries through different national agricultural research systems and private seed companies (<xref ref-type="bibr" rid="B50">Fisher et al., 2015</xref>). As per reports, more than 2 million farmers in sub-Saharan Africa are growing these new varieties and reporting 20&#x2013;30% higher yield than traditional varieties, even under moderate drought conditions. It benefited 30&#x2013;40 million people and gained &#x0024;160&#x2013;200 million worth by increased grain production each year in drought-affected areas of sub-Saharan Africa (<xref ref-type="bibr" rid="B33">CIMMYT, 2021</xref>).</p>
<p>Another project, WEMA was in pipeline from 2008 to 2018 to develop drought-tolerant maize for smallholder farmers in Asia. Similarly, a project is ongoing at Indian Council of Agricultural Research (ICAR)-Indian Institute of Maize Research (IIMR), India for genetic enhancement of maize for the development of high yielding and climate resilient hybrids with the objective to develop drought tolerance new productive inbreds and hybrids (<xref ref-type="bibr" rid="B70">IIMR, 2019</xref>). Various seed companies have also released drought tolerant hybrids utilizing both traditional and transgenic breeding technologies such as Pioneer Optimum AQUAmax&#x2122;, Syngenta Artesian&#x2122;, and DroughtGard&#x2122; (<xref ref-type="bibr" rid="B2">Adee et al., 2016</xref>). Since, last few decades considering the severity of drought stress, a number of drought tolerant maize varieties have been developed under such projects throughout the globe (<xref ref-type="table" rid="T5">Table 5</xref>).</p>
<table-wrap position="float" id="T5">
<label>TABLE 5</label>
<caption><p>Drought tolerant maize cultivars/genotypes developed utilizing conventional and molecular breeding tools.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">S. No.</td>
<td valign="top" align="left">Germplasm/variety for drought tolerance</td>
<td valign="top" align="left">Strategy/method</td>
<td valign="top" align="left">Traits targeted</td>
<td valign="top" align="left">References</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">1.</td>
<td valign="top" align="left">CML 562, CML 563, CML 564, CML 565, CML 566, CML 567</td>
<td valign="top" align="left">Inbred evaluation and doubled haploidy</td>
<td valign="top" align="left">Drought tolerance traits</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B32">CIMMYT, 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left">3.</td>
<td valign="top" align="left">GDRM-187</td>
<td valign="top" align="left">Participatory plant breeding</td>
<td valign="top" align="left">Extra-early maturity</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B175">Witcombe et al., 2003</xref></td>
</tr>
<tr>
<td valign="top" align="left">4.</td>
<td valign="top" align="left">ZM 309, 401, 423, 521, 623, 625, 721, KDVI 1, 4, 6, WS 103, Melkassa 4, WH 403, 502, 504, and ZMS 402, 737</td>
<td valign="top" align="left">Conventional breeding</td>
<td valign="top" align="left">&#x2013;</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B36">Dar et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left">6.</td>
<td valign="top" align="left">KSC720, KSC 710GT, and KSC 700</td>
<td valign="top" align="left">Field screening</td>
<td valign="top" align="left">Grain yield and drought tolerant indices</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B112">Naghavi et al., 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left">7.</td>
<td valign="top" align="left">TZEE Y POP STR QPM C0 and EVDT W 99 STR QPM CO</td>
<td valign="top" align="left">Mother and baby trials at field</td>
<td valign="top" align="left">Yield related traits</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B25">Buah et al., 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left">9.</td>
<td valign="top" align="left">M1227-17, M0826-3, and M1124-18</td>
<td valign="top" align="left">Field screening</td>
<td valign="top" align="left">Grain yield, ASI</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B107">Meseka et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left">11.</td>
<td valign="top" align="left">La Posta Sequia, Pool 26 Sequia, Pool 18 Sequia, Pool 16 Sequia, DTPW, DTPY, TuxpenoSequia</td>
<td valign="top" align="left">FS/S1/S2 breeding schemes breeding schemes</td>
<td valign="top" align="left">&#x2013;</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B42">Edmeades et al., 1997</xref></td>
</tr>
<tr>
<td valign="top" align="left">26.</td>
<td valign="top" align="left">Malawi hybrids 30, 31, and 32</td>
<td valign="top" align="left">Conventional breeding</td>
<td valign="top" align="left">High grain yield and flint grains</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B31">CIMMYT, 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left">14.</td>
<td valign="top" align="left">AMDROUT1(DT-Tester) c1F2, AMDROUT2(Ac)c1F2, AMDROUT3, AMDROUT4, AMDROUT (5 &#x00D7; 6), MARS7 to MARS12, G16BNSEQ-C3, DTPY-C9</td>
<td valign="top" align="left">Genomic selection</td>
<td valign="top" align="left">Genetic gains per year</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B166">Vivek et al., 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left">15.</td>
<td valign="top" align="left">70 May 80, Aaccel, and Indaco</td>
<td valign="top" align="left">Drought indices</td>
<td valign="top" align="left">Grain yield</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B16">Barutcular et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left">16.</td>
<td valign="top" align="left">ADL47 &#x00D7; EXL15, ADL41 &#x00D7; EXL15, and EXL02 &#x00D7; ADL47</td>
<td valign="top" align="left">Evaluation under drought stress</td>
<td valign="top" align="left">Grain yield</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B1">Adebayo and Menkir, 2014</xref></td>
</tr>
<tr>
<td valign="top" align="left">17.</td>
<td valign="top" align="left">9011-30, STR-EV-IWD, and IYFD-C0</td>
<td valign="top" align="left">Evaluation under drought stress</td>
<td valign="top" align="left">Ears/plant and kernels/ear</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B76">Kamara et al., 2003</xref></td>
</tr>
<tr>
<td valign="top" align="left">18.</td>
<td valign="top" align="left">SAMMAZ-26 (DTSTR WC1)</td>
<td valign="top" align="left">Improvement breeding</td>
<td valign="top" align="left">High grain yield</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B117">NSPI, 2022</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">TL 98, 99, and 01</td>
<td valign="top" align="left">MABC</td>
<td valign="top" align="left">ASI, flowering traits, yield</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B130">Ribaut and Ragot, 2007</xref></td>
</tr>
<tr>
<td valign="top" align="left">19.</td>
<td valign="top" align="left">Hybrid TA5084</td>
<td valign="top" align="left">Gene introgression</td>
<td valign="top" align="left">Yield</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B150">Syngenta Foundation, 2021</xref></td>
</tr>
<tr>
<td valign="top" align="left">20.</td>
<td valign="top" align="left">MON87460</td>
<td valign="top" align="left">Transgenic</td>
<td valign="top" align="left">Yield</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B114">Nemali et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left">21.</td>
<td valign="top" align="left">2004 TZE-WDT STR C4, 2013 DTE STR-Y Syn, DT-Y STR Synthetic, 2009 TZE-WDT STR, 2008 DTMA-Y STR, 2012 TZE-WDT C4 STR C5, 2014 TZE-WDT STR, 2011 TZE-Y DT STR</td>
<td valign="top" align="left">Genetic improvement breeding</td>
<td valign="top" align="left">Ear height, plant height, kernel row number, ear weight, grain yield</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B121">Oluwaranti and Ajani, 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left">25.</td>
<td valign="top" align="left">Longe 1, Longe 4, Longe 5, MM3, Longe 7H, Longe 9H, Longe 10H, Longe 11H, UH5051, UH5052, UH5053, PAN 67, WE 2101, WE 2103, WE 2104, WE 2106, WE 2114, WE 2115</td>
<td valign="top" align="left">Modern conventional methods</td>
<td valign="top" align="left">Early maturity, yield</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B145">Simtowe et al., 2019</xref></td>
</tr>
</tbody>
</table></table-wrap>
</sec>
<sec id="S7" sec-type="conclusion">
<title>Conclusion and Future Perspectives</title>
<p>Currently, the agriculture sector is facing the biggest challenge of climatic change with frequent spells of drought. In addition, drought being a complex trait further complicates the speedily development of drought tolerant maize cultivars. A number of advanced QTL mapping, genomic-assisted breeding methods, genetic engineering, and genome editing tools have been implemented successfully to harness the commercial stress-tolerant maize varieties. With the deployment of recent advanced technologies, researchers have provided some insight on the genetic architecture and regulatory pathways of drought tolerance mechanism in maize. The rapid trait mining has detected several genomic regions regulating drought-associated traits that can be utilized for direct selection. But still the candidate genes involved to create genetic variants for these traits are unexplored. Hence, it is highly important to execute the multi-omics studies, genetic designs, and pertinent analytical methods in integration to clearly understand the molecular regulatory mechanisms of drought response. The other approaches <italic>viz</italic>., transgenics and genome editing have widened the range to improve desired traits in shortest period of time. Among crop plants, <italic>Arabidopsis</italic>, <italic>Brachypodium distachyon</italic>, and rice are the excellent model plants to study the drought stress responses. It provides a useful heterologous system to test new genes discovered in cereal crops like maize and their relative molecular responses. As a wild grass, <italic>Brachypodium</italic> has never been subjected to human selection, which is why it has a very promising framework for tracking drought-tolerance mechanisms in grasses that may have been lost during temperate cereal crop&#x2019;s domestication. Hence, the research work done in these model plants should be transferred to maize by using an accurate experimental design, including high throughput phenotyping platforms to thoroughly investigate tissue- and cell type-specific drought responses. It is crucial to strengthen the coordination among different research groups and institutions working to develop drought tolerance in maize. In addition, partnership among public and private sector could not only prove instrumental to provide promising results, but also help in designing potential drought-tolerant strategies that might have a huge impact on global maize production.</p>
</sec>
<sec id="S8">
<title>Author Contributions</title>
<p>SeS and YK wrote the manuscript. SK and ShS contributed in structuring the manuscript. RK conceptualized the idea. RK and SR edited the manuscript thoroughly. All authors read and finalized the manuscript.</p>
</sec>
<sec id="conf1" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="pudiscl1" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
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