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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2022.1107224</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>ROS-mediated plasmodesmal regulation requires a network of an Arabidopsis receptor-like kinase, calmodulin-like proteins, and callose synthases</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Vu</surname>
<given-names>Minh Huy</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1267991"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hyun</surname>
<given-names>Tae Kyung</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2137436"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bahk</surname>
<given-names>Sungwha</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Jo</surname>
<given-names>Yeonhwa</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/353945"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kumar</surname>
<given-names>Ritesh</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn004">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1936920"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Thiruppathi</surname>
<given-names>Dhineshkumar</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn004">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/573156"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Iswanto</surname>
<given-names>Arya Bagus Boedi</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1074807"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chung</surname>
<given-names>Woo Sik</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/802835"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Shelake</surname>
<given-names>Rahul Mahadev</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/74523"/>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2021;</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Kim</surname>
<given-names>Jae-Yean</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/76379"/>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2021;</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Division of Applied Life Science (BK21 Four Program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University</institution>, <addr-line>Jinju</addr-line>, <country>Republic of Korea</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Industrial Plant Science and Technology, College of Agricultural, Life and Environmental Sciences, Chungbuk National University</institution>, <addr-line>Cheongju</addr-line>, <country>Republic of Korea</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>College of Biotechnology and Bioengineering, Sungkyunkwan University</institution>, <addr-line>Suwon</addr-line>, <country>Republic of Korea</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Division of Life Science, Gyeongsang National University</institution>, <addr-line>Jinju</addr-line>, <country>Republic of Korea</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Research and Development Center, Nulla Bio Inc 501 Jinju-daero</institution>, <addr-line>Jinju</addr-line>, <country>Republic of Korea</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Vinay Kumar, Pune University, India</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Ezekiel Ahn, United States Department of Agriculture (USDA), United States; Siddhesh B. Ghag, UM-DAE Centre for Excellence in Basic Sciences, India</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Rahul Mahadev Shelake, <email xlink:href="mailto:rahultnau@gmail.com">rahultnau@gmail.com</email>; Jae-Yean Kim, <email xlink:href="mailto:kimjy@gnu.ac.kr">kimjy@gnu.ac.kr</email>
</p>
</fn>
<fn fn-type="other" id="fn003">
<p>&#x2021;ORCID: Rahul Mahadev Shelake, <uri xlink:href="https://orcid.org/0000-0003-0691-560X">orcid.org/0000-0003-0691-560X</uri>; Jae-Yean Kim, <uri xlink:href="https://orcid.org/0000-0002-1180-6232">orcid.org/0000-0002-1180-6232</uri>
</p>
</fn>
<fn fn-type="present-address" id="fn004">
<p>&#x2020;Present address: Ritesh Kumar, Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, United States; Dhineshkumar Thiruppathi, Donald Danforth Plant Science Center, St Louis, MO, United States</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Plant Abiotic Stress, a section of the journal Frontiers in Plant Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>19</day>
<month>01</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>13</volume>
<elocation-id>1107224</elocation-id>
<history>
<date date-type="received">
<day>24</day>
<month>11</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>29</day>
<month>12</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Vu, Hyun, Bahk, Jo, Kumar, Thiruppathi, Iswanto, Chung, Shelake and Kim</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Vu, Hyun, Bahk, Jo, Kumar, Thiruppathi, Iswanto, Chung, Shelake and Kim</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Plasmodesmata (PD) play a critical role in symplasmic communication, coordinating plant activities related to growth &amp; development, and environmental stress responses. Most developmental and environmental stress signals induce reactive oxygen species (ROS)-mediated signaling in the apoplast that causes PD closure by callose deposition. Although the apoplastic ROS signals are primarily perceived at the plasma membrane (PM) by receptor-like kinases (RLKs), such components involved in PD regulation are not yet known. Here, we show that an Arabidopsis NOVEL CYS-RICH RECEPTOR KINASE (NCRK), a PD-localized protein, is required for plasmodesmal callose deposition in response to ROS stress. We identified the involvement of NCRK in callose accumulation at PD channels in either basal level or ROS-dependent manner. Loss-of-function mutant (<italic>ncrk</italic>) of NCRK induces impaired callose accumulation at the PD under the ROS stress resembling a phenotype of the PD-regulating <italic>GLUCAN SYNTHASE-LIKE 4</italic> (<italic>gsl4</italic>) knock-out plant. The overexpression of transgenic NCRK can complement the callose and the PD permeability phenotypes of <italic>ncrk</italic> mutants but not kinase-inactive NCRK variants or Cys-mutant NCRK, in which Cys residues were mutated in Cys-rich repeat ectodomain. Interestingly, NCRK mediates plasmodesmal permeability in mechanical injury-mediated signaling pathways regulated by GSL4. Furthermore, we show that NCRK interacts with calmodulin-like protein 41 (CML41) and GSL4 in response to ROS stress. Altogether, our data indicate that NCRK functions as an upstream regulator of PD callose accumulation in response to ROS-mediated stress signaling pathways.</p>
</abstract>
<kwd-group>
<kwd>callose</kwd>
<kwd>plasmodesmata</kwd>
<kwd>ROS perception</kwd>
<kwd>abiotic and biotic stress</kwd>
<kwd>receptor-like kinase (RLK)</kwd>
</kwd-group>
<counts>
<fig-count count="5"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="63"/>
<page-count count="13"/>
<word-count count="7307"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Biotic and abiotic stresses, such as pathogens, insects, drought, waterlogging, and heat or cold, augment and intensify the risks to food security and affect agricultural production (<xref ref-type="bibr" rid="B32">Lesk et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B2">Bailey-Serres et&#xa0;al., 2019</xref>). The increased frequency and intensity of various biotic and abiotic stresses highlight the need to understand the mechanisms that help plants to resist such stresses (<xref ref-type="bibr" rid="B60">Zandalinas et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B42">Shelake et&#xa0;al., 2022</xref>). Mechanical wounding caused by different stresses activates plant defense pathways similar to those triggered by insects and herbivores (<xref ref-type="bibr" rid="B31">Le&#xf3;n et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B9">Gatehouse, 2002</xref>; <xref ref-type="bibr" rid="B50">War et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B41">Savatin et&#xa0;al., 2014</xref>). Also, wounded plant parts are prone to nutrient loss and provide entry points to phytopathogens (<xref ref-type="bibr" rid="B41">Savatin et&#xa0;al., 2014</xref>). Reactive oxygen species (ROS) and calcium (Ca<sup>2+</sup>) waves play a crucial role in integrating different stress response signaling networks and activating the plant defense mechanisms. In addition to activating acclimation mechanisms in the plant tissues exposed to stress, various abiotic stresses, as well as mechanical injury, can trigger rapid systemic responses at the whole plant level (<xref ref-type="bibr" rid="B23">Kaya et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B6">Cui and Lee, 2016</xref>; <xref ref-type="bibr" rid="B34">Mangano et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B48">Toyota et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B55">Wu et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B4">Cheval et&#xa0;al., 2020</xref>), resulting in the development of stress memory that protects the plants from subsequent exposures to the same stress.</p>
<p>Controlling the cell-to-cell movement <italic>via</italic> callose-mediated plasmodesmal regulation is one of the prevalent modes of action adopted by the plant immune system during stress (<xref ref-type="bibr" rid="B16">Iswanto et&#xa0;al., 2021</xref>). Callose, a &#x3b2;-1,3-glucan, is synthesized and degraded dynamically at the plasmodesmata (PD) neck, which modulates PD pore size and regulates the diffusion of molecules and signals (<xref ref-type="bibr" rid="B28">Kumar et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B1">Amsbury et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B55">Wu et&#xa0;al., 2018</xref>). ROS and callose were proposed to be linked through the function of the GLUCAN SYNTHASE-LIKE 4 (GSL4)/callose synthase 8 (CalS8) during wound stress in Arabidopsis (<italic>Arabidopsis thaliana</italic>) (<xref ref-type="bibr" rid="B6">Cui and Lee, 2016</xref>). Hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) is a major ROS species involved in plant signaling pathways due to its unique aspects, such as rapid movability across the plasma membrane (PM), the relatively long half-life, oxidizes proteins, and possess properties similar to water (<xref ref-type="bibr" rid="B3">Castro et&#xa0;al., 2021</xref>). H<sub>2</sub>O<sub>2</sub> activates the signaling through a cascade of proteins and is implicated in plant adaptation to developmental and stress responses (<xref ref-type="bibr" rid="B36">Mittler et&#xa0;al., 2022</xref>). Extracellular H<sub>2</sub>O<sub>2</sub> (eH<sub>2</sub>O<sub>2</sub>) at the apoplast is sensed by receptors and transduced to the cytosol. It then enables alterations in different protein structures, kinases/phosphatase molecular switches, localization, and protein-protein interactions (<xref ref-type="bibr" rid="B3">Castro et&#xa0;al., 2021</xref>). A primary mechanism for H<sub>2</sub>O<sub>2</sub> sensing is the oxidative modification of Cysteine (Cys) residues, in which the availability of different oxidation states results in a diverse range of post-translational modifications (<xref ref-type="bibr" rid="B51">Waszczak et&#xa0;al., 2015</xref>). Recently, the apoplast ROS sensor named HYDROGEN-PEROXIDE-INDUCED CALCIUM INCREASES 1 (HPCA1) perceives the H<sub>2</sub>O<sub>2</sub> molecule by modifying the conformation of the extracellular domain (ED), also called hydrogen peroxide (HP) domain (<xref ref-type="bibr" rid="B54">Wu et&#xa0;al., 2020</xref>). The HP domain, which contains four Cys residues, is activated by eH<sub>2</sub>O<sub>2</sub>, increasing the kinase activity and resulting in induced Ca<sup>2+</sup> influx into the cytosol (<xref ref-type="bibr" rid="B54">Wu et&#xa0;al., 2020</xref>). However, HPCA1 is essential for local and systemic cell-to-cell ROS signaling in the local response to bacterial and salinity stress treatments, but not wounding, suggesting that other extracellular ROS receptors exist at PD that mediate the ROS-induced wounding stress response (<xref ref-type="bibr" rid="B8">Fichman et&#xa0;al., 2022</xref>).</p>
<p>Over a decade, many PD-related receptor proteins have been shown to regulate cell-to-cell movement <italic>via</italic> controlling the PD aperture during stress and development, such as PD-LOCALIZED PROTEIN 1 and 5 (PDLP1, PDLP5), QI&#x100;N SH&#x14e;U KINASE (QSK1), CYS-RICH RECEPTOR-LIKE KINASE 2 (CRK2), and several members of PM-located Leucine-rich-repeat receptor-like kinases (RLKs) family (<xref ref-type="bibr" rid="B30">Lee et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B11">Grison et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B14">Hunter et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B25">Kimura et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B7">Fichman et&#xa0;al., 2021</xref>). Nevertheless, whether PD localized-receptor proteins are activated by eH<sub>2</sub>O<sub>2</sub> that may participate in PD regulation by inducing callose deposition during wounding stress are currently unknown. ROS, Ca<sup>2+</sup>, phosphorylation, and electric signaling are rendered at the local wounding site to trigger rapid plant response (<xref ref-type="bibr" rid="B40">Sager and Lee, 2014</xref>; <xref ref-type="bibr" rid="B48">Toyota et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B49">Vega-Mu&#xf1;oz et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B7">Fichman et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B43">Shin et&#xa0;al., 2022</xref>). Previous studies have shown that changes in cytosolic Ca<sup>2+</sup> signals regulate plasmodesmal flux and callose deposition following biotic and abiotic stresses (<xref ref-type="bibr" rid="B29">Leba et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B54">Wu et&#xa0;al., 2020</xref>). Calmodulin and Calmodulin-like (CML) proteins, Ca<sup>2+</sup>-dependent protein kinases (CDPKs), and calcineurin-B-like proteins are the major families of Ca<sup>2+</sup>-binding proteins in plants (<xref ref-type="bibr" rid="B62">Zeng et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B59">Yip Delormel and Boudsocq, 2019</xref>). CML9 negatively controls callose deposition after <italic>Pseudomonas syringae pv. tomato</italic> (Pto) DC3000 strain treatment in Arabidopsis (<xref ref-type="bibr" rid="B29">Leba et&#xa0;al., 2012</xref>). The PD-localized CML41 positively regulates the PD callose upon the flagellin epitope flg22 pathogen perception (<xref ref-type="bibr" rid="B57">Xu et&#xa0;al., 2017</xref>). Overall, several PD-located receptor and CML protein family members have been recently identified; but none have been characterized for their interacting partner proteins in the plasmodesmal regulation during the stress response.</p>
<p>Here, we characterize an Arabidopsis NOVEL CYS-RICH RECEPTOR KINASE (NCRK; AT2G28250), which acts as a key ROS receptor and is involved in callose-mediated PD regulation in response to external ROS treatment and wounding stress. Moreover, we characterize that NCRK is necessary for basal callose deposition and ROS-dependent PD closure, and these processes are mediated by its interactions with CML41 and GSL4. In addition, our study reveals that NCRK phosphorylation is essential for the ROS-mediated downstream signaling pathways during this process. We further characterize the function of the Cys-rich motif positioned on ED of NCRK (NCRK-ED) in ROS perception in response to eH<sub>2</sub>O<sub>2</sub> treatment. Our findings indicate that NCRK plays a crucial role in the apoplast ROS signaling, linking the callose accumulation that requires the plant to acclimate to biotic and abiotic stresses.</p>
</sec>
<sec id="s2" sec-type="results">
<label>2</label>
<title>Results</title>
<sec id="s2_1">
<label>2.1</label>
<title>NCRK is a PD-localized RLK and controls basal callose deposition at the PD</title>
<p>Our previous study on rice PD-proteome analysis identified several members of the RLK family resided in the PD region, including an unpublished Os02g20400 (<xref ref-type="bibr" rid="B19">Jo, 2011</xref>; <xref ref-type="bibr" rid="B20">Jo et&#xa0;al., 2011</xref>). By using bioinformatic analysis, we identified an Arabidopsis RLK protein family member (AT2G28250, named NCRK) with the highest identity compared with Os02g20400 (named OsNCRK) (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>). This protein was formerly reported as an NCRK, a member of the RLK family with an unknown function (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>) (<xref ref-type="bibr" rid="B37">Molendijk et&#xa0;al., 2008</xref>). In Arabidopsis, NCRK could be hyperphosphorylated and partially co-localized with the small GTPase ARABIDOPSIS RAB HOMOLOG F2A (RapF2a) in endosomes (<xref ref-type="bibr" rid="B37">Molendijk et&#xa0;al., 2008</xref>). The amino acid alignment between RLK orthologs reveals that the extracellular receptor domain encoded by NCRK protein contains two repeats of about 40 amino acids sharing a unique and highly conserved Cys-rich motif, WXCXCX13&#x2013;18CX3CXC across the species, suggesting their specific function (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>NCRK is a plasmodesmata-localized RLK that regulates basal PD permeability. <bold>(A)</bold> Phylogenetic tree of NCRK across species. <bold>(B)</bold> Conserved cysteine-rich repeat domain homolog sequence across species. <bold>(C)</bold> OsNCRK (upper panels) and NCRK (middle and bottom panels) co-localize with PD markers during transient expression, and NCRK (bottom panels) co-localizes with callose in the transgenic plant. <bold>(D)</bold> PD callose staining and its quantification in the leaf epidermal cells of wild-type Col-0 and <italic>ncrk-1</italic> (n&#x2265;12). Scale bar: 20 &#x3bc;m. <bold>(E)</bold> DANS assays on Col-0 and <italic>ncrk-1</italic>. The diameter of the fluorescent circle shows the level of cell-to-cell permeability of symplasmic dye (n&#x2265;12). Scale bar: 200 &#x3bc;m. <bold>(F)</bold> Plant images and quantification of rosette leaf diameter, Col-0 (n=31), <italic>ncrk-1</italic> (n=31), <italic>gsl4</italic> (n=34). Scale bar: 1&#xa0;cm. The data are summarized in box plots in which the line within the box marks the median, the box signifies the upper and lower quartiles. The whiskers go down to the smallest value and up to the largest. Data were analyzed by a Student&#x2019;s <italic>t</italic>-test. ns, not significant. <sup>**</sup>
<italic>P &lt;</italic>0.01, <sup>***</sup>
<italic>P</italic> &lt; 0.001.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-13-1107224-g001.tif"/>
</fig>
<p>First, we examined the subcellular localization of OsNCRK and NCRK in the transient <italic>Nicotiana benthamiana</italic> plant by transiently expressing green fluorescent protein (GFP) fusion to the C-terminal of both proteins, followed by fluorescence imaging using confocal microscopy. OsNCRK and Arabidopsis NCRK showed punctate spots at the cell periphery; a typical pattern was observed resembling PD localization. To confirm if the spots are co-localized with PD, we co-expressed NCRK-GFP with PD markers such as <italic>Turnip vein-clearing virus</italic> (<italic>TVCV</italic>) movement protein, callose staining with Aniline Blue dye, PDLP1 and PDLP5 (<xref ref-type="bibr" rid="B47">Thomas et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B20">Jo et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B30">Lee et&#xa0;al., 2011</xref>). NCRK-GFP fluorescence spots co-localized well with the four PD markers (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1C</bold>
</xref> and <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;1A</bold>
</xref>). To quantify the percentage of NCRK co-localization at the PD area, we measured the PD index by calculating the ratio of mean fluorescent intensity of the PD enrichment area and its PM neighbor area (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;1C</bold>
</xref>). NCRK was highly localized in the PD area, similarly with PDLP1 or PDLP5, but not with RECEPTOR DEAD KINASE1 (RDK1) used as PM markers (<xref ref-type="bibr" rid="B27">Kumar et&#xa0;al., 2017</xref>) (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;1B</bold>
</xref>). Analyses of transgenic seedlings expressing a <italic>GUS</italic> gene driven by Arabidopsis <italic>NCRK</italic> promoter (a) showed that the underlying gene (<italic>gus</italic>) is broadly expressed throughout the whole seedling and more prominently in the root, hypocotyl, and cotyledon. In cotyledon, relatively strong expression was observed in vascular tissues but to less extent in mesophyll cells (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;2B</bold>
</xref>). Analyses of <italic>pNCRK::NCRK-mCherry</italic> transgenic lines showed that the fluorescence was co-localized or localized to the vicinity of the aniline blue-stained callose (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1D</bold>
</xref>). To investigate the potential function of NCRK in PD regulation, we obtained T-DNA insertion lines (<italic>ncrk-1, ncrk-2</italic>) (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;2A</bold>
</xref>) and performed the PD callose staining experiment. <italic>ncrk-1 and ncrk-2</italic> mutants showed less basal callose accumulation (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1D</bold>
</xref> and <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;3C</bold>
</xref>). <italic>ncrk-1</italic> mutant plants exhibited increased PD permeability and decreased PD callose compared with wild-type plants in the leave and hypocotyl system (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1E</bold>
</xref> and <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figures&#xa0;3A, B</bold>
</xref>), suggesting the role of NCRK in callose deposition and PD permeability regulation. The callose turnover of the plant showed defective growth and development or was even lethal except for some mutant genes such as <italic>gsl4</italic>. Interestingly, the <italic>ncrk-1</italic> mutant plant displayed enhanced developmental growth compared with the wild-type, similar to the <italic>gsl4</italic> mutant plant, showing a reduced PD callose level and increased PD permeability (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1F</bold>
</xref>). These data indicate that NCRK is a plasmodesmal RLK protein family member, which controls basal callose accumulation and PD permeability.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>NCRK is involved in ROS-induced callose deposition</title>
<p>It has been shown that the Cys residue in the ED of RLK could perceive the eH<sub>2</sub>O<sub>2</sub> and respond to the ROS stress (<xref ref-type="bibr" rid="B14">Hunter et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B54">Wu et&#xa0;al., 2020</xref>). Therefore, we investigated whether NCRK could be involved in ROS-dependent callose accumulation. As described earlier, the spraying of 10 mM H<sub>2</sub>O<sub>2</sub> on the leaf surface of wild-type plants was reported to stimulate ROS-mediated callose accumulation after 2 hours of treatment (<xref ref-type="bibr" rid="B6">Cui and Lee, 2016</xref>). Therefore, we focused on the role of NCRK in ROS-induced callose accumulation by eH<sub>2</sub>O<sub>2</sub> application. We first observed that callose deposition and PD permeability of the <italic>ncrk-1</italic> mutant plant was impaired in 10 mM H<sub>2</sub>O<sub>2</sub> treatment (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A, B</bold>
</xref>). To confirm that the basal callose and ROS-induced callose impaired phenotype of <italic>ncrk-1</italic> was indeed caused by the NCRK mutation, we showed that NCRK could rescue the <italic>ncrk-1</italic> phenotype and callose accumulation was restored in the complementation lines upon eH<sub>2</sub>O<sub>2</sub> treatment (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2E</bold>
</xref>, <xref ref-type="fig" rid="f3">
<bold>3A</bold>
</xref>). NCRK contains a highly conserved and unique Cys-rich repeat sequence in the ED (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>). To explore whether these extracellular Cys residues are essential for eH<sub>2</sub>O<sub>2</sub> sensing, we performed <italic>ncrk-1</italic> complementation using NCRK mutant, which included Cys mutations (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2C, D</bold>
</xref>). NCRK mutants with two (Cys30 and Cys32 to Ala; 2CA), three (Cys46, Cys50, and Cys52 to Ala; 3CA), or all five Cys residues to Ala (5CA) could complement the basal callose level of <italic>ncrk-1</italic> but not ROS-dependent callose phenotype (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2F</bold>
</xref>), suggesting that NCRK-ED might not affect basal callose accumulation, but the Cys-rich motif seems specifically involved in ROS-induced callose regulation. The HPCA1 contains the Cys residues, which could sense the eH<sub>2</sub>O<sub>2</sub> in Arabidopsis (<xref ref-type="bibr" rid="B54">Wu et&#xa0;al., 2020</xref>). To investigate whether the Cys residues of ED in NCRK could respond to eH<sub>2</sub>O<sub>2</sub>, we pursued a domain-swapping approach replacing the ED and transmembrane domain (TMD) of NCRK with the ED and TMD of HPCA1 that yielded the chimeric H/N (HPCA1/NCRK) protein. The predicted structure of the H/N receptor was comparable with the native NCRK protein except for the ED region (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). However, the chimeric H/N protein was localized at PM but not in the PD, as observed in the transient <italic>N. benthamiana</italic> assay (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>NCRK is required for H<sub>2</sub>O<sub>2</sub>-induced callose deposition. <bold>(A)</bold> Images of basal and ROS-dependent callose deposition in Col-0 and <italic>ncrk-1, gsl4</italic> and <italic>gsl8+/-</italic> mutant treated with H<sub>2</sub>O<sub>2</sub> and their quantification. Scale bar: 20 &#x3bc;m. (n&#x2265;12). <bold>(B)</bold> Images of basal and ROS-dependent PD permeability of Col-0 and <italic>ncrk-1</italic> mutant treated with H<sub>2</sub>O<sub>2</sub> and their quantification. Scale bar: 200 &#x3bc;m, (n&#x2265;12). <bold>(C, D)</bold> Diagram of NCRK extracellular domain and its mutants. The Cys residues are marked as magenta, the Ala residues are marked as red. The disulfide bonds of the Cys-rich motif are shown. Quantification of basal and ROS-dependent callose deposition of <italic>ncrk-1</italic> lines complemented with NCRK and NCRK mutants for Cys residues overexpressed using native <italic>NCRK</italic> promoter summarized in panel <bold>(E, F)</bold>, respectively. Scale bar: 20 &#x3bc;m. (n&#x2265;12). Data were analyzed by Student&#x2019;s <italic>t</italic>-test. ns, not significant. <sup>***</sup>
<italic>P</italic> &lt; 0.001.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-13-1107224-g002.tif"/>
</fig>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>The extracellular domain of NCRK is required for basal and ROS-dependent callose deposition. <bold>(A)</bold> Diagram of NCRK and HPCA1/NCRK fusion protein and 3D protein structure of NCRK protein and HPCA1/NCRK fusion protein. SP, signal peptide; TMD, transmembrane domain; CRM-RD, Cys-rich motif-receptor domain; KD, kinase domain; HPD, hydrogen peroxide domain; LRR-RD, Leu-rich repeat-receptor domain. <bold>(B)</bold> Localization of NCRK and HPCA1-NCRK fusion protein in <italic>N. benthamiana</italic>. <bold>(C)</bold> Images of PD callose deposition of Col-0, <italic>ncrk-1</italic>, and HPCA1-NCRK complementation line treated with H<sub>2</sub>O<sub>2</sub> and quantification of callose levels depicted in <bold>(D)</bold> (n&#x2265;12). Scale bar: 20 &#x3bc;m. Data were analyzed by Student&#x2019;s <italic>t</italic>-test. ns, not significant. <sup>***</sup>
<italic>P</italic> &lt; 0.001.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-13-1107224-g003.tif"/>
</fig>
<p>Further, Arabidopsis transgenic plants in the <italic>ncrk-1</italic> mutant background with a chimeric H/N protein driven by the endogenous NCRK promoter were generated, and eH<sub>2</sub>O<sub>2</sub> treatment was applied (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). We found that the chimeric H/N protein could not complement the callose in normal growth conditions but partially rescued the impaired callose deposition phenotype in the case of eH<sub>2</sub>O<sub>2</sub> treatment (<xref ref-type="fig" rid="f3">
<bold>Figures&#xa0;3C, D</bold>
</xref>). These data suggest that NCRK-ED may serve a similar function as the HPCA1-HP domain regarding the H<sub>2</sub>O<sub>2</sub>-induced callose response. Overall, these results demonstrate the role of NCRK in eH<sub>2</sub>O<sub>2</sub> perception at PD, and the Cys-rich motif of NCRK-ED might be involved in eH<sub>2</sub>O<sub>2</sub>-induced callose deposition.</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>NCRK requires a CML41-GSL4 complex for ROS-induced callose regulation</title>
<p>Changes in eH<sub>2</sub>O<sub>2</sub> and intracellular H<sub>2</sub>O<sub>2</sub> were found to be related to an increase in Ca<sup>2+</sup> and consequently activate several CML protein family members (<xref ref-type="bibr" rid="B33">Magnan et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B29">Leba et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B56">Wu et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B57">Xu et&#xa0;al., 2017</xref>). Also, the CML members are localized at the nucleus, cytoplasm, and PM, and some are co-localized with NCRK (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;4</bold>
</xref>). This subcellular co-localization might suggest the interaction of NCRK and the other partners. We hypothesized that NCRK might control ROS-induced callose deposition by directly interacting with CMLs members or GSL members and regulating its activity. To understand how NCRK controls the callose deposition during ROS stress and to identify the interaction partners of NCRK, we performed bimolecular fluorescent complementation (BiFC), co-immunoprecipitation (Co-IP) assay, and genetic experiments. As a positive control, RDK1-YFP<sup>n</sup> and ABI4-YFP<sup>c</sup> resulted in strong reconstituted YFP signals at PM (<xref ref-type="bibr" rid="B27">Kumar et&#xa0;al., 2017</xref>). However, a fluorescence signal was not observed in the leaves co-expressing NCRK-YFP<sup>n</sup> and ABI4-YFP<sup>c</sup> (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>). We detected a YFP signal on the PM when the NCRK-YFP<sup>n</sup> was co-expressed with the YFP<sup>c</sup> fused to CML19, CML20, CML41, GSL4, and GSL8. This data indicates that NCRK showed strong or weak interactions with several CML (CML19, CML20, CML41) and GSL (GSL4, GSL8) family members. We performed Co-IP assays to confirm the in planta interaction of NCRK with the CML and GSL family members. The result showed that NCRK coimmunoprecipitates with CML41, GSL4, and GSL8 but not with negative control (GFP) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>). Consequently, BiFC and Co-IP observations revealed that NCRK strongly interacts with CML41, GSL4, and GSL8 <italic>in vivo</italic>. To test if the ROS can induce the interaction of NCRK and CML41, we performed the BiFC assay under the eH<sub>2</sub>O<sub>2</sub> treatment. After 2 hours of post-spraying, the reconstituted YFP fluorescence resulting from NCRK-YFP<sup>n</sup> and CML41-YFP<sup>c</sup> was detected in the membrane and punctate spots. When treated with eH<sub>2</sub>O<sub>2,</sub> the accumulation of NCRK-CML41 interaction signal intensity was increased in leaves but not in RDK1-ABI4 (positive control) and NCRK-CML20 signal intensity (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4C</bold>
</xref>). These results suggest that eH<sub>2</sub>O<sub>2</sub> may activate NCRK, stimulating the interaction between NCRK and CML41.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>NCRK interacts with CML and GSL members. <bold>(A)</bold> Interaction of NCRK with its partners <italic>in vivo</italic> by BiFC assay. Scale bar: 20 &#x3bc;m. <bold>(B)</bold> Interaction of NCRK with its partners by Co-IP. <bold>(C, D)</bold> ROS-induced NCRK interaction investigated using BiFC assay and visualized by confocal microscopy. <bold>(E)</bold> Callose deposition of Col-0, <italic>ncrk-1</italic>, <italic>gsl4</italic> single mutant, and <italic>ncrk gsl4</italic> double mutant. Data were analyzed by Student&#x2019;s <italic>t</italic>-test. ns, not significant. <sup>***</sup>
<italic>P</italic> &lt; 0.001.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-13-1107224-g004.tif"/>
</fig>
<p>Since we observed the direct interaction of NCRK and GSL members, GSL4 and GSL8, we analyzed the role of GSL members in the ROS-dependent pathway of NCRK. To determine whether GSL4 is working in the NCRK-related pathway, we generated the <italic>ncrk gsl4</italic> double mutant plant by crossing the <italic>ncrk-1</italic> and <italic>gsl4</italic> mutant. The callose intensity of the double mutant was similar to the <italic>ncrk-1</italic> and <italic>gsl4</italic> single mutants in normal growth and ROS-treated conditions (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4D</bold>
</xref>). It suggests that GSL4 acts in the NCRK-dependent-ROS pathway. Our data demonstrated that NCRK, CML41, and GSL4 are responsible for ROS-induced callose deposition pathways.</p>
</sec>
<sec id="s2_4">
<label>2.4</label>
<title>NCRK phosphorylation is required for ROS-induced callose accumulation</title>
<p>NCRK shares similar conserved catalytic subdomains with CRK2 and HPCA1, which require kinase activity for their functions (<xref ref-type="bibr" rid="B45">Stone and Walker, 1995</xref>; <xref ref-type="bibr" rid="B26">Kornev et&#xa0;al., 2006</xref>) (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;5</bold>
</xref>). To explore whether NCRK (NCRK<sup>CD</sup>) cytoplasmic domain has kinase activity or functions as a scaffold, we prepared recombinant proteins purified from <italic>E. coli</italic>. We could detect the autophosphorylation and phosphorylation of myelin basic protein (MBP) only with wild-type NCRK<sup>CD</sup> but not with the kinase-inactive mutants NCRK(K238E)<sup>CD</sup> (ATP binding) and NCRK(D339L)<sup>CD</sup> (catalytic) (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>). Since NCRK physically interacts with CML41, we tested whether NCRK phosphorylates the CML41 <italic>in vitro</italic>. The ROP4 was used as a positive control, and NCRK could phosphorylate ROP4 and CML41. NCRK also could phosphorylate CML20, but it reduces the activity of NCRK (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>). The <italic>ncrk-1</italic> transgenic plants with constructs of these two kinase inactive variants driven by the endogenous NCRK promoter were generated. The complementation lines showed partially rescued basal callose levels in mock condition but significantly reduced callose levels compared to wild-type plants under the ROS stress condition (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>). These data revealed that the NCRK phosphorylates CML20 and CML41 <italic>in vitro</italic>, and NCRK phosphorylation status influences ROS-induced callose accumulation at PD.</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>NCRK kinase activity is required for ROS-induced callose accumulation. <bold>(A)</bold> The kinase activity of NCRK<sup>CD</sup> wild-type, NCRK(K238E)<sup>CD</sup> and NCRK(D339L)<sup>CD</sup> mutant proteins was analyzed by autoradiography. <bold>(B)</bold> NCRK phosphorylates ROP4 and CML41. <bold>(C)</bold> Partial complementation of the <italic>ncrk-1</italic> phenotype by expressing kinase-inactive variants NCRK. <bold>(D)</bold> Fluorescence intensity quantification of callose deposition of Col-0 and <italic>ncrk-1</italic> mutant following paraquat (MV) treatment. <bold>(E)</bold> Fluorescence intensity quantification of callose deposition in Col-0 and <italic>ncrk-1</italic> mutant following wounding treatment. <bold>(F)</bold> Callose deposition of Col-0 and <italic>ncrk-1</italic> mutant following flg22 treatment and <bold>(G)</bold> their intensity quantification. Scale bar: 200 &#x3bc;m. (n&#x2265;12). <bold>(H)</bold> Evaluation of <italic>ncrk-1</italic> mutant plant susceptibility to Pst DC3000 cor<sup>-</sup>; quantification of bacterial growth in Col-0 and <italic>ncrk-1</italic> upon 0 and 3&#xa0;d post&#x2010;inoculation of Pst DC3000 cor<sup>-</sup> suspension. Data were analyzed by Student&#x2019;s <italic>t</italic>-test. ns, not significant. *<italic>P</italic> &lt; 0.05, <sup>**</sup>
<italic>P</italic> &lt; 0.01, <sup>***</sup>
<italic>P</italic> &lt; 0.001.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-13-1107224-g005.tif"/>
</fig>
</sec>
<sec id="s2_5">
<label>2.5</label>
<title>NCRK is required for wounding-induced callose deposition</title>
<p>Since the <italic>ncrk-1</italic> mutant showed the deficiency in the callose deposition under the eH<sub>2</sub>O<sub>2</sub> treatment, we tested whether ROS production triggered by another abiotic and biotic stress in the plant could affect the callose deposition in NCRK mutant background. Previously, herbicide methyl viologen (MV) treatment was shown to induce ROS production in chloroplast and mitochondria (<xref ref-type="bibr" rid="B5">Cui et&#xa0;al., 2019</xref>). The chloroplast and peroxisomes are the primary sources of intracellular ROS in plants (<xref ref-type="bibr" rid="B38">Noctor et&#xa0;al., 2002</xref>). To determine the effect of MV application on callose deposition, wild-type plants were air sprayed with different MV concentrations (0.1, 1, and 5 &#x3bc;M). Wild-type plants sprayed with 5 &#x3bc;M of MV showed considerably higher callose deposition at 2 hours post-treatment (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;6</bold>
</xref>). Similarly, a higher level of callose accumulation was observed in the <italic>ncrk-1</italic> mutant plants sprayed with 5 &#x3bc;M of MV (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5D</bold>
</xref>). This data revealed that NCRK is independent of MV-induced callose deposition. Next, we tested whether NCRK is required for apoplastic ROS-induced callose deposition. Since GSL4 is specifically responsible for apoplasmic ROS-mediated PD regulation during wounding stress and NCRK acts as a mediator of GSL4 in eH<sub>2</sub>O<sub>2</sub> response, we quantified callose level after mechanical wounding to wild-type and <italic>ncrk-1</italic> mutant plants. This experiment showed the <italic>ncrk-1</italic> mutant is impaired to gain of callose intensity within 2 hours post-wounding (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5E</bold>
</xref>). These data suggest that NCRK plays a role in wounding-dependent callose deposition.</p>
<p>The previous study has shown that CML41 is a responsive component of callose deposition-pathogen defense, and an flg22 (<italic>P. syringae</italic>) also triggers apoplastic ROS in plant immunity (<xref ref-type="bibr" rid="B57">Xu et&#xa0;al., 2017</xref>). To examine the function of NCRK mediating ROS-induced plant signaling network during pathogenic stress, we infiltrated wild-type and <italic>ncrk-1</italic> mutant plants with flg22 to assess the impact of the altered callose regulation. After 24 hours post-infiltration, PD callose of <italic>ncrk-1</italic> mutant plants was slightly reduced compared to wild-type plants (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5F, G</bold>
</xref>). Additionally, we focused on assessing the significance of NCRK activity in bacterial resistance by surface inoculation with <italic>P. syringae</italic>. After three days post-infection (3 dpi), <italic>ncrk-1</italic> mutant plants showed increased bacterial growth compared to wild-type plants, indicating that NCRK might be involved in an flg22-induced PD closure pathway.</p>
</sec>
</sec>
<sec id="s3" sec-type="discussion">
<label>3</label>
<title>Discussion</title>
<p>In this study, we have shown that NCRK accumulates at the plasmodesmal region and regulates the callose deposition and, thereby, PD permeability. NCRK also contributes to maintaining ROS-induced callose deposition upon eH<sub>2</sub>O<sub>2</sub> stress. The expression of NCRK mutated at five Cys residues with Ala could not complement <italic>ncrk-1</italic> callose level after ROS treatment, suggesting Cys residues of NCRK-ED are essential for ROS-dependent callose accumulation. As the H/N chimeric protein could rescue the <italic>ncrk-1</italic> phenotype, the NCRK-ED might serve as an eH<sub>2</sub>O<sub>2</sub> receptor. Furthermore, NCRK has kinase activity, which is required for ROS-induced callose deposition. We also demonstrated that NCRK could physically interact with GSL4 and CML41 and mediate ROS-dependent callose response.</p>
<p>NCRK is the plasmodesmal RLK responsible for basal callose deposition, as demonstrated in the callose staining assay and Drop-ANd-See (DANS) assay (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1D, E</bold>
</xref>). Previous reports have shown that basal PD permeability was controlled by GSL4 and GSL8 in different callose-related pathways (<xref ref-type="bibr" rid="B6">Cui and Lee, 2016</xref>). The plant phenotype and callose level of the <italic>ncrk-1</italic> mutant were like <italic>gsl4</italic> mutants (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1F</bold>
</xref>, <xref ref-type="fig" rid="f2">
<bold>2A</bold>
</xref>), indicating that NCRK and GSL4 have similar functions with respect to callose regulation. GSL4 contributes to the maintenance of basal PD permeability, which relies on PDLP5 function (<xref ref-type="bibr" rid="B6">Cui and Lee, 2016</xref>), whereas GSL8 physically interacts with PDLP5 (<xref ref-type="bibr" rid="B39">Saatian et&#xa0;al., 2018</xref>) and controls basal PD callose but does not need it for functioning in ROS-dependent PD permeability regulation (<xref ref-type="bibr" rid="B6">Cui and Lee, 2016</xref>). Therefore, GSL4 and GSL8 may interact directly or indirectly with other proteins to control basal PD permeability (<xref ref-type="bibr" rid="B18">Iswanto et&#xa0;al., 2022</xref>). Here, we found that the NCRK interacts with GSL4 and GSL8 (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>), suggesting basal PD permeability could be mediated by NCRK interactions with GSL4 or GSL8 and may be linked with PDLP5 functioning. Thus, NCRK could interact with PDLP5 to regulate callose synthase activity, an exciting aspect to explore in future work.</p>
<p>Previously, the yeast two-hybrid assay showed NCRK interaction with ROP11 (<xref ref-type="bibr" rid="B37">Molendijk et&#xa0;al., 2008</xref>). ROP11 also interacts with RBOHF and regulates ROS production (<xref ref-type="bibr" rid="B58">Yan et&#xa0;al., 2016</xref>), indicating the possible involvement of NCRK in ROS-induced callose response. To test this hypothesis, we performed a callose staining assay together with eH<sub>2</sub>O<sub>2</sub> spraying to examine the callose level in <italic>ncrk-1</italic> mutant leaves. Using this assay, we compared the plasmodesmal callose of <italic>ncrk-1</italic> with wild-type, <italic>gsl4</italic>, and <italic>gsl8</italic> heterozygous mutants. The callose deposition of <italic>ncrk-1</italic> mutant plants was impaired in eH<sub>2</sub>O<sub>2</sub> response (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>). Moreover, the <italic>ncrk gls4</italic> double mutant also showed an impaired callose deposition pattern similar to the <italic>ncrk-1 or gls4</italic> single mutant (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4E</bold>
</xref>). In summary, NCRK and GSL4 function in the basal and ROS-dependent callose deposition pathways.</p>
<p>As discussed earlier, Cys-rich motifs have been proposed as a candidate for ROS sensors responsible for most of the communication between the apoplast and intracellular environment in various stress responses (<xref ref-type="bibr" rid="B14">Hunter et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B25">Kimura et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B54">Wu et&#xa0;al., 2020</xref>). It is also suggested that the activity of a candidate H<sub>2</sub>O<sub>2</sub> receptor is based on their extracellular Cys-rich motifs located at PD to respond rapidly and trigger the callose defense upon ROS stress (<xref ref-type="bibr" rid="B4">Cheval et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B3">Castro et&#xa0;al., 2021</xref>). Our callose staining assay showed that the 5CA (but not 3CA or 2CA) mutant failed to retain the function of callose accumulation in ROS response (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2F</bold>
</xref>). It is reported that the conserved Cys motif of Cys-rich receptor-like kinases could form the disulfide bridges and control the thiol redox regulation (<xref ref-type="bibr" rid="B53">Wrzaczek et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B15">Id&#xe4;nheimo et&#xa0;al., 2014</xref>). The predicted NCRK protein structure revealed the orientation of Cys residues of NCRK-ED could form disulfide bonds (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>). These disulfide bonds could not be formed when the five Cys residues were mutated with Ala (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2D</bold>
</xref>), indicating that Cys residues might be sites of eH<sub>2</sub>O<sub>2</sub> sensing.</p>
<p>Furthermore, H/N chimeric complementation plant can respond to eH<sub>2</sub>O<sub>2</sub> and trigger callose deposition in the <italic>ncrk-1</italic> mutant background (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3D</bold>
</xref>). Altogether, our data suggests that the Cys-rich motif of NCRK serves as an ROS sensor, likewise the HP domain of HPCA1 but needs more investigations. Therefore, considering the disulfide bonds are required for ROS-induced callose deposition, and NCRK-ED function is similar to that of HPCA1-ED, it is tempting to speculate that Cys residues of NCRK-ED might also be modified by eH<sub>2</sub>O<sub>2</sub>. Thus, further characterization of reduced-oxidized states of the Cys-rich motif will provide molecular insights into NCRK functioning in the ROS sensing mechanism.</p>
<p>Previous studies showed that the CRK2 could translocate to PD, phosphorylate GSL6 (Cals1), and subsequently promote callose deposition (<xref ref-type="bibr" rid="B14">Hunter et&#xa0;al., 2019</xref>). No significant changes were observed in callose accumulation between non-treated and NaCl-treated CRK2 kinase-dead mutant lines. Therefore, CRK2 kinase activity is essential for salt-induced callose response. Similarly, our results about quantification of callose deposition upon eH<sub>2</sub>O<sub>2</sub> stress or mock conditions of kinase-inactive lines showed no significant differences (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>). In addition, the basal callose level of kinase-inactive plants was not fully recovered compared to wild-type under normal growth conditions. These results suggest that NCRK kinase activity is crucial in basal and ROS-dependent callose regulation. Notably, CRK2 directly interacts with the GSL6 and phosphorylates it (<xref ref-type="bibr" rid="B14">Hunter et&#xa0;al., 2019</xref>). Hence, considering the interaction of NCRK with GSL4 and GSL8, it will be interesting to test whether NCRK might phosphorylate GSL4 or GSL8. Moreover, NCRK shares the conserved Threonine (Thr) residues similar to the kinase domains of CRK2 and HPCA1 that were previously confirmed as primary phosphorylation sites (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplement Figure&#xa0;5</bold>
</xref>). Thus, the role of Thr residues of NCRK could be studied to know their functions in phosphorylation-mediated regulation of GSL4 or GSL8 during the H<sub>2</sub>O<sub>2</sub> stress.</p>
<p>CML41 is a PD-localized Ca<sup>2+</sup>-binding protein required for plant defense response during pathogen attack (<xref ref-type="bibr" rid="B57">Xu et&#xa0;al., 2017</xref>). In addition, the interaction strength between NCRK and CML41 intensified following ROS treatment (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4C, D</bold>
</xref>). Since CML41 (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4C, D</bold>
</xref>) and GSL4 (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4E</bold>
</xref>) mediates ROS-induced callose accumulation, which is dependent on NCRK function, the combination of NCRK and CML41 might incorporate with GSL4 to modulate the callose accumulation in response to ROS stress. We found herbicide (MV)-induced callose deposition was independent of NCRK functioning. On the other hand, biotic stressor (flg22) treatment showed slightly reduced callose deposition in NCRK mutant background compared with wild-type Col-0 (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5D, F&#x2013;H</bold>
</xref>). We also demonstrated that GSL4 requires NCRK to respond to the mechanical injury (wounding)-induced stress and subsequently callose-mediated PD regulation (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5E</bold>
</xref>). Overall, comparative analysis of wild-type and <italic>ncrk</italic> mutant plants indicated that NCRK may or may not be directly involved in the stress response pathway, depending on the stress type. Given that the Arabidopsis genome encodes 12 GSL and 50 CML family members, NCRK interaction with a combination of these different GSL or CML family members may modify the protein conformation and transduce cellular signals generated by various stresses to mediate plant defense responses.</p>
</sec>
<sec id="s4" sec-type="materials|methods">
<label>4</label>
<title>Materials and methods</title>
<sec id="s4_1">
<label>4.1</label>
<title>Plant material and growth condition</title>
<p>Seedlings of <italic>Arabidopsis thaliana</italic>, ecotype Columbia-0 (Col-0) were grown in soil or in petri dishes in half-strength Murashige and Skoog (MS) salts (Duchefa Biochemie, P.O. Box 809 2003 RV Haarlem, The Netherlands), 1.0% (w/v) sucrose (BioShop, Canada Inc., 5480 Mainway, Burlington, Ontario L7L 6A4, Canada), and 0.6% (w/v) agar (Duchefa Biochemie) in controlled environmental rooms or plant growth chambers (20-22&#xb0;C). The fluency rate of white light was approximately 100 &#x3bc;mol m<sup>-2</sup>s<sup>-1</sup>. The photoperiods were 16 hours/8 hours light/dark cycles. For seedling culture, seeds were sterilized with 20% bleach for 5&#xa0;min, washed with sterilized water, and then sown on soil or half-strength MS media, placed at 4&#xb0;C for 3 days in the dark, and then transferred to growth rooms or chambers. The hydroponic assay was performed in half-strength of MS media, and plants were grown at the culture room condition (22&#xb0;C under 16 hours/8 hours light/dark cycles). T-DNA insertion mutants were obtained from the Arabidopsis Biological Resource Center (<uri xlink:href="https://abrc.osu.edu">https://abrc.osu.edu</uri>). The T-DNA insertion mutants of NCRK (SALK_045757 and SALK_202953 designated as <italic>ncrk-1</italic> and <italic>ncrk-2</italic>, respectively) identified by T-DNA insertion-based PCR using T-DNA left-border primer (LBb1.3) and two pairs of NCRK-specific primers (LP1-RP1 and LP2-RP2), respectively.</p>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>Constructs and transgenic lines</title>
<p>Golden Gate cloning system (<xref ref-type="bibr" rid="B52">Werner et&#xa0;al., 2012</xref>) was used to generate <italic>pNCRK::NCRK-mCherry</italic>, <italic>pNCRK::NCRK(C30A/C32A)-mCherry</italic>, <italic>pNCRK::NCRK(C46A/C50A/C52A)-mCherry</italic>, <italic>pNCRK::NCRK(C30A/C32A/C46A/C50A/C52A)-mCherry</italic>, <italic>pNCRK::NCRK<sup>K238E</sup>-mCherry, pNCRK::NCRK<sup>D339L</sup>-mCherry, pNCRK::HPCA1<sup>ED</sup>-NCRK<sup>CD</sup>-mCherry</italic>. The full-length NCRK genomic region (2 kb upstream and 1 kb downstream of the NCRK coding region), HPCA1 ED region (2 kb), NCRK promoter region (2 kb), and NCRK1 full-length genomic were amplified by PCR from genomic DNA. These fragments were cloned into the pAGM4723 expression vector (Addgene #48015). Transgenic Arabidopsis lines were generated by <italic>Agrobacterium</italic>-mediated transformation (<xref ref-type="bibr" rid="B63">Zhang et&#xa0;al., 2006</xref>), and homozygous transgenic T3 lines carrying a single insertion were used. The <italic>ncrk-1</italic> mutant was complemented by a genomic fragment and NCRK-mCherry driven by the native NCRK promoter. The site-directed mutagenesis was used to introduce Cys-to-Ala mutations into the <italic>pNCRK::NCRK-mCherry</italic> plasmid. For the <italic>pNCRK::GFP-GUS</italic>, <italic>p35S::CML19-GFP</italic>, <italic>p35S::CML19-GFP</italic>, <italic>p35S::CML20-GFP</italic>, was cloned by Gateway cloning. The NCRK promoter fragment, CML9, CML19, CML20, and CML41 cDNA were amplified from genomic DNA. These fragments were moved into pDONR207 plasmid (Invitrogen, 5791 Van Allen Way PO Box 6482 Carlsbad, California 92008, USA) and then cloned into the Gateway binary vector pKGWFS7, pMDC43, and pMDC83, respectively.</p>
</sec>
<sec id="s4_3">
<label>4.3</label>
<title>Phylogenetic analysis and protein structure analysis</title>
<p>A phylogenetic tree was created by multiple sequence alignment method using MEGA (v11.0.9) (<xref ref-type="bibr" rid="B46">Tamura et&#xa0;al., 2021</xref>), in which bootstrap was performed with 1,000 replicates, and gaps were treated as pairwise deletions. The neighbor-joining method performed a bootstrap with 1,000 replicates for the phylogenetic trees. Multiple sequence alignments of the full-length amino acid sequence of <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref> (<italic>OsNCRK</italic>, <italic>GRMZM2G063897</italic>, <italic>Glyma.11G144800</italic>, <italic>Glyma.12G077300</italic>, and <italic>AtNCRK</italic>) and <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure S5</bold>
</xref> (CRK2, HPCA, and NCRK) were aligned by ClustalW (<uri xlink:href="https://www.ebi.ac.uk/Tools/msa/clustalo">https://www.ebi.ac.uk/Tools/msa/clustalo</uri>) (<xref ref-type="bibr" rid="B44">Sievers et&#xa0;al., 2011</xref>). The protein structure of NCRK, H/N fusion protein, and NCRK-ED were predicted by AlphaFold2 using MMseq2 (<xref ref-type="bibr" rid="B35">Mirdita et&#xa0;al., 2022</xref>). The 3D structure was visualized by the PyMOL program.</p>
</sec>
<sec id="s4_4">
<label>4.4</label>
<title>Histochemical GUS activity analysis</title>
<p>Histochemical GUS staining of the NCRK promoter-driven GUS (<italic>pNCRK::GFP-GUS</italic>) transgenic lines was detected by infiltration with 5-bromo-4-chloro-3indolyl-b-D-glucuronic acid (X-Gluc), as described in an earlier report (<xref ref-type="bibr" rid="B27">Kumar et&#xa0;al., 2017</xref>). Briefly, plant materials were incubated at 37&#xb0;C overnight in a GUS staining buffer containing 2 mM X-Gluc, 2mM potassium ferricyanide, 2 mM potassium ferrocyanide, 0.2% Triton X-100, and 50 mM potassium phosphate buffer, pH 7.0 and followed by chlorophyll clearing in 75% ethanol. GUS images were taken using a stereomicroscope.</p>
</sec>
<sec id="s4_5">
<label>4.5</label>
<title>NCRK-mCherry subcellular localization analysis and BiFC assays</title>
<p>For analysis of NCRK-mCherry, HPCA1/NCRK-mCherry in stable transgenic Arabidopsis lines, seedlings grown in half-strength MS media in Petri dishes for 7 days were subjected to mCherry confocal imaging with the FV1000 or FV1000MPE confocal microscope (Olympus, Japan). Data represent more than 3 independent lines examined, which displayed similar mCherry subcellular localization. To analyze wild-type NCRK and HPCA1/NCRK protein subcellular location, the transient expression of fluorescent fusion proteins in <italic>N. benthamiana</italic> leaf tissue was performed as previously described (<xref ref-type="bibr" rid="B17">Iswanto et&#xa0;al., 2020</xref>). The full-length coding sequences of NCRK, HPCA1/NCRK were amplified from Col-0 and fused with p35S and mCherry into pAGM4723 vector by Golden Gate cloning. For BiFC assays, LR recombination of appropriated coding sequence regions (NCRK, CML9, CML19, CML20, CML41, GSL4, and GSL8) in pDONR207 were performed with the split-YFP destination vectors pDEST-<sup>GW</sup>VYNE/pDEST-VYNE<sup>&#xae;GW</sup>, which allow C-terminal fusions with C-terminal YFP moieties (<xref ref-type="bibr" rid="B10">Gehl et&#xa0;al., 2009</xref>). <italic>Agrobacterium tumefaciens</italic> strain GV3101 containing the binary plasmid was grown in LB medium with the appropriate antibiotics at 28&#xb0;C for 24 hours for the primary culture and then subculture at 28&#xb0;C for 12 hours. The cells were centrifuged for 15 min at 3500 rpm, resuspended to a final OD<sub>600</sub> of 0.8, and infiltrated into tobacco leaves by a needle-less syringe. Leaf pieces were viewed under a confocal microscope after 2-3 days.</p>
</sec>
<sec id="s4_6">
<label>4.6</label>
<title>Protein extraction and co-immunoprecipitation</title>
<p>For Co-IP in <italic>N. benthamiana</italic>, Golden Gate was used to clone PDRLK1 full-length genomic to generate HA-tagged fusions. pDONR207-<italic>CML19, CML20, CML41</italic> and <italic>CML9, GSL8</italic> and <italic>ROP4</italic> were recombined into pMDC43 and pMCD83, respectively, to generate GFP-tagged fusions by Gateway cloning. To clone the <italic>p35S::GSL4-GFP</italic> construct, GFP with <italic>Nos</italic> terminator was amplified with additionally flanked with restriction sites for SmaI and SpeI. The amplicon was excised and cloned into the construct pDEST-<sup>GW</sup>VYNE-GSL4 <italic>via</italic> SmaI/SpeI. These constructs were electroporated into <italic>A. tumefaciens</italic> strain GV3101 (pMP90). <italic>Agrobacterium</italic> suspensions carrying <italic>p35S::PDRLK1-HA</italic>, <italic>p35S::GFP-CML19</italic>, <italic>p35S::GFP-CML20</italic>, and <italic>p35S::GFP-CML41, p35S::GSL8-GFP, pDEST::GSL4-GFP</italic> were infiltrated in various combinations into <italic>N. benthamiana</italic> leaves (OD<sub>600</sub>&#x2009;=&#x2009;0.3). One gram of leaf tissue was harvested at 48-72 hpi, and total protein was resuspended in 1&#x2009;ml IP buffer (100&#x2009;mM Tris-HCl pH 7.5, 150&#x2009;mM NaCl, 1 mM EDTA, 10% glycerol,&#x2009;3 mM DTT, 1 mM Na<sub>2</sub>MoO<sub>4</sub>, 1.5 mM sodium orthovanadate [Na<sub>3</sub>VO<sub>4</sub>], 2 mM sodium fluoride [NaF], 1 mM phenylmethylsulfonyl fluoride [PMSF], 50 &#xb5;M MG132, a complete protease inhibitor [Roche] and 0.5% IGEPAL). The samples were clarified by centrifugation at 13,000 rpm, at 4&#xb0;C for 10&#x2009;min twice. The supernatant was incubated with 10 &#x3bc;l of protein A agarose incubated with anti-GFP antibody for 2 hours at 4&#xb0;C with 360&#xb0; rotating shaker. Beads were washed five times with IP buffer. 40 &#x3bc;l of 2&#xd7; SDS sample buffer was added to the beads, and the beads were heated at 70&#xb0;C for 15&#x2009;min and subjected to further SDS-PAGE and immunoblotting analysis (<xref ref-type="bibr" rid="B21">Kadota et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B27">Kumar et&#xa0;al., 2017</xref>).</p>
</sec>
<sec id="s4_7">
<label>4.7</label>
<title>DANS assays, plasmodesmal callose quantification</title>
<p>For hypocotyl experiments, five-day-old, etiolated Arabidopsis seedlings were first cut at the base of the hook using a razor blade (<xref ref-type="bibr" rid="B17">Iswanto et&#xa0;al., 2020</xref>). A coverslip was placed between each hypocotyl cut surface and the MS agar plate. For dye loading, individual agar blocks containing 8-hydroxypyrene-1,3,6-trisulfonic acid trisodium salt (5 mg/ml) were placed on the cut hypocotyl surface. After a 5 min loading period, seedlings were washed in water for 15&#xa0;min, and then fluorescent probe movements were evaluated by confocal microscopy. For leave experiments, intact 2.5 to 3.5-week-old Arabidopsis plants were air sprayed once with H<sub>2</sub>O<sub>2</sub>, MV, or wounding. Following a designated incubation time, the fifth and sixth entire leaves were subjected to DANS assays. DANS dye-loading assay using 1 mM 5(6)-carboxy-2&#x2019;-7&#x2019;-dichlorofluorescein diacetate for cell-to-cell movement assay as described (<xref ref-type="bibr" rid="B6">Cui and Lee, 2016</xref>). Briefly, the dye was loaded as a 1 &#xb5;l droplet on the central regions of the adaxial side of each half-leaf blade, followed by confocal imaging of the abaxial side after 5&#xa0;min loading and rinsing with a distilled water. Plasmodesmal callose staining was performed by staining the mature leaves or hypocotyl, for 1-1.5 hours in the dark before confocal imaging, with 0.02% aniline blue solution containing 0.6 M glycine-NaOH, pH 9.5, and 0.001% silwet L-77 (<xref ref-type="bibr" rid="B12">Han et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B6">Cui and Lee, 2016</xref>). Quantifying aniline blue stained plasmodesmal callose levels was performed using ImageJ as described before (<xref ref-type="bibr" rid="B61">Zavaliev and Epel, 2015</xref>) by automatically extracting plasmodesmata-associated fluorescent spots along the cell boundaries of epidermal leaf pavement cells and plotting fluorescence intensity per unit area.</p>
</sec>
<sec id="s4_8">
<label>4.8</label>
<title>Chemical treatments, mechanical wounding, and bacterial infection</title>
<p>All chemical treatments were performed by spraying them on intact and mature plants at various concentrations before DANS assays or plasmodesmal callose quantification. Mechanical wounding was done by snipping the tip of the fifth or sixth leaf with a pair of sharp forceps (<xref ref-type="bibr" rid="B6">Cui and Lee, 2016</xref>). Infected plants were grown in the plant chamber and subjected to DANS assays or plasmodesmal callose quantification 48 hours after infection. For flg22 treatment, either distilled water or distilled water containing 1 &#xb5;M of flg22 was infiltrated into rosette leaves. After 24&#xa0;hours, the infiltrated leaves were incubated in callose staining buffer (aniline blue) for 1-1.5 hours in the dark (<xref ref-type="bibr" rid="B57">Xu et&#xa0;al., 2017</xref>). For bacterial growth curve assay, we performed infections by surface inoculation with the less virulent, coronatine-deficient strain DC3000 (cor<sup>-</sup>). Briefly, Pst cultured at 28&#xb0;C and resuspended in MgCl<sub>2</sub> to final A<sub>600</sub> nm between 0.02 and 0.04 were generously infiltrated onto leaf abaxial surfaces of 5-6-week&#x2010;old plants. Plants were covered, and leaf discs were taken 3 dpi from three leaves per plant, with three plants per genotype per independent trial. Bacterial growth was assessed by colony counting (<xref ref-type="bibr" rid="B22">Kadota et&#xa0;al., 2014</xref>).</p>
</sec>
<sec id="s4_9">
<label>4.9</label>
<title>Confocal microscopy and image processing</title>
<p>For detection of aniline blue-stained plasmodesmal callose, confocal images were taken under a 100X UplanXApo objective with oil, using 405-nm laser excitation with a 420 to 480 nm emission filter. Free or tagged mCherry was imaged with 543 nm laser excitation and a 587 to 683 nm bandpass emission filter. GFP was imaged with 488 nm laser excitation and a 505 to 550 nm bass pass emission filter. DANS and HPTS assay images were taken under a 10X UplanXApo objective using 488 nm Argon laser excitation, with a 505 to 550 nm band pass emission filter. All confocal images were acquired and processed using Olympus FV1000MPE or FV3000 confocal microscope or ImageJ software (<xref ref-type="bibr" rid="B17">Iswanto et&#xa0;al., 2020</xref>).</p>
</sec>
<sec id="s4_10">
<label>4.10</label>
<title>Recombinant protein purification and kinase assay</title>
<p>Recombinant protein purification and kinase assays were conducted as previously described (<xref ref-type="bibr" rid="B13">Harper and Speicher, 2011</xref>). NCRK<sup>CD</sup> (wild type, (K238E)<sup>CD</sup> and (D339L)<sup>CD</sup>) and other substrates (CML20, CML41, and ROP4) were amplified and ligated into the pGEX4T-1 vector containing GST tag. Overexpression of those proteins in <italic>E. coli</italic> strain BL21(DE3) and purification on glutathione sepharose 4B R10 (GE Healthcare, USA) were conducted as described. For the kinase assay, these GST-fusion cytoplasmic domain kinase proteins (3 &#x3bc;g), GST (1 &#x3bc;g; negative control) MBP (0.5 &#x3bc;g; positive control) were incubated in kinase reaction buffer (25 mM Tris-HCl, pH 7.5, 1 mM DTT, 20 mM MgCl<sub>2</sub>, 2 mM MnCl<sub>2</sub>, and 50 &#x3bc;M [&#x3b3;-<sup>32</sup>P] ATP) and initiated using 1 &#x3bc;Ci [&#x3b3;-<sup>32</sup>P] ATP. The final reaction volume was 20 &#x3bc;l. After 30&#xa0;min at 30&#xb0;C, the reaction was stopped by adding 6 &#x3bc;L of 4 &#xd7; SDS sample buffer and boiling for 5&#xa0;min. Samples containing 1 &#x3bc;g of protein from each autophosphorylation reaction were separated by SDS-PAGE, and the gel was stained, dried, and autoradiographed (<xref ref-type="bibr" rid="B24">Kim et&#xa0;al., 2017</xref>).</p>
</sec>
<sec id="s4_11">
<label>4.11</label>
<title>Statistical analysis</title>
<p>Column plots were created using GraphPad Prism version 9.0.0 for windows, GraphPad Software, San Diego, California, USA (<uri xlink:href="http://www.graphpad.com">www.graphpad.com</uri>). Student&#x2019;s <italic>t</italic>-test was performed to test the statistical significance of differences.</p>
</sec>
</sec>
<sec id="s5" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material</bold>
</xref>, further inquiries can be directed to the corresponding author/s.</p>
</sec>
<sec id="s6" sec-type="author-contributions">
<title>Author contributions</title>
<p>MHV and J-YK conceived the idea and designed the experiments. YJ and MHV designed experiments, performed experiments, analyzed data, and wrote the manuscript. TKH, SB, RK, DT, and ABBI performed the experiments. RMS contributed to the interpretation and draft of the output. RMS and J-YK revised the manuscript. All authors read and approved the final manuscript.</p>
</sec>
</body>
<back>
<sec id="s7" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by the National Research Foundation of Korea (grants NRF 2022R1A2C3010331, 2021R1A5A8029490, 2020M3A9I4038352, and 2020R1A6A1A03044344).</p>
</sec>
<sec id="s8" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>J-YK is a founder and CEO of Nulla Bio Inc.</p>
<p>The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s9" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s10" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fpls.2022.1107224/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fpls.2022.1107224/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet_1.pdf" id="SM1" mimetype="application/pdf"/>
</sec>
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