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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2022.1064948</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Editorial</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Editorial: Genomics and disease resistance in wheat and maize</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Cheng</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/374056"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Su</surname>
<given-names>Handong</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1669600"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sakuma</surname>
<given-names>Shun</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/420081"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Xu</surname>
<given-names>Mingliang</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1671673"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Birchler</surname>
<given-names>James A.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/25776"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Han</surname>
<given-names>Fangpu</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/149241"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Crop Research Institute, Shandong Academy of Agricultural Sciences</institution>, <addr-line>Jinan</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Shenzhen Institute of Nutrition and Health, Huazhong Agricultural University</institution>, <addr-line>Wuhan</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Tottori University</institution>, <addr-line>Tottori</addr-line>, <country>Japan</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>China Agricultural University</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>University of Missouri</institution>, <addr-line>Columbia, SC</addr-line>, <country>United States</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>Institute of Genetics and Developmental Biology, Chinese Academy of Sciences</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited and Reviewed by: Brigitte Mauch-Mani, Universit&#xe9; de Neuch&#xe2;tel, Switzerland</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Fangpu Han, <email xlink:href="mailto:fphan@genetics.ac.cn">fphan@genetics.ac.cn</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Plant Pathogen Interactions, a section of the journal Frontiers in Plant Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>15</day>
<month>11</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>13</volume>
<elocation-id>1064948</elocation-id>
<history>
<date date-type="received">
<day>09</day>
<month>10</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>26</day>
<month>10</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Liu, Su, Sakuma, Xu, Birchler and Han</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Liu, Su, Sakuma, Xu, Birchler and Han</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<related-article id="RA1" related-article-type="commentary-article" xlink:href="https://www.frontiersin.org/research-topics/34836/genomics-and-disease-resistance-in-wheat-and-maize" ext-link-type="uri">
<bold>Editorial on the Research Topic</bold>
<article-title>Genomics and disease resistance in wheat and maize</article-title>
</related-article>
<kwd-group>
<kwd>disease resistance</kwd>
<kwd>gene mapping</kwd>
<kwd>distant hybridization</kwd>
<kwd>gene structure</kwd>
<kwd>wheat</kwd>
<kwd>maize</kwd>
</kwd-group>
<counts>
<fig-count count="0"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="8"/>
<page-count count="3"/>
<word-count count="883"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Due to the extreme climatic events and inappropriate cropping patterns, numerous diseases are becoming more and more serious for wheat and maize in recent years, which causes yield losses and affects food security worldwide (<xref ref-type="bibr" rid="B3">Krupinsky et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B7">Parikka et&#xa0;al., 2012</xref>). Fusarium head blight, powdery mildew, and rusts are the most serious diseases of wheat (<italic>Triticum aestivum</italic> L.) (<xref ref-type="bibr" rid="B5">Liu et&#xa0;al., 2020</xref>). Stalk rot, head smut, southern corn rust, and ear rot are among the most serious diseases that can substantially reduce maize yield and impact global markets (<xref ref-type="bibr" rid="B8">Zhu et&#xa0;al., 2021</xref>). New types or variants of phytopathogens overcome past sources of resistance with the ever-shrinking genetic diversity of crop varieties (<xref ref-type="bibr" rid="B4">Li et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B5">Liu et&#xa0;al., 2020</xref>). With the rapid advance in genomics tools, genetic and genomic resources are now being the key approach for basic research and breeding for the crop disease resistance community (<xref ref-type="bibr" rid="B1">Feng et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B5">Liu et&#xa0;al., 2020</xref>). Hence, there is an urgency to explore novel disease resistance genes and their mechanisms of action in wheat and maize. In this topic, recent advances in genomics and disease resistance or stress tolerance studies for wheat and maize are presented in 15 publications, contributed by 131 authors.</p>
</sec>
<sec id="s2">
<title>Genome assembly and gene structure</title>
<p>Genomic assembly of the pathogen is helpful to understand its pathogenesis. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.1022819">Ma et&#xa0;al.</ext-link> sequenced and assembled the whole genome of <italic>Didymella glomerata</italic>, a new fungal pathogen causing Didymella leaf blight (DLB) in maize. They identified three maize germplasms conferring resistance to DLB, and revealed potential mechanism underlying DLB resistance. By subjecting wheat to ethyl methane sulfonate treatment, <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.988641">He et&#xa0;al.</ext-link> created 113 mutations in the coding region of the <italic>Pm21</italic> gene that encodes a broad-spectrum resistance to powdery mildew, and revealed the key functional sites for resistance and structural distribution characteristics. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.1006409">Sun et&#xa0;al.</ext-link> analyzed the expression pattern of the type-A response regulatory gene family under different stresses in wheat.</p>
</sec>
<sec id="s3">
<title>Disease resistance gene mapping or mining</title>
<p>It is very important to locate the disease resistance genes and explore their alleles for studying their genetic evolution and evaluating their breeding value in crops (<xref ref-type="bibr" rid="B2">Fu et&#xa0;al., 2012</xref>). <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.931778">Sun et&#xa0;al.</ext-link> mapped a new powdery mildew resistance gene <italic>Pm<sub>SN15218</sub>
</italic> on wheat chromosome 2AL from the breeding line SN15218, which is distinct from the known resistance gene <italic>Pm4b</italic>. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.1005627">Mu et&#xa0;al.</ext-link> identified a recessive powdery mildew resistance gene <italic>pmYN99102</italic> on wheat chromosome 2BL <italic>via</italic> bulked segregant exome capture sequencing. The gene can be traced when it is integrated into those susceptible cultivars. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.912589">Yu et&#xa0;al.</ext-link> mined the alleles of wheat powdery mildew resistance gene <italic>Pm2</italic>, providing valuable information for the utilization of <italic>Pm2</italic> alleles in wheat breeding. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.984527">Tong et&#xa0;al.</ext-link> verified the great breeding value of the maize <italic>ZmCCT</italic> haplotype <italic>H5</italic>, which synchronously modulates the yield potential, stalk-rot resistance, and drought tolerance. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.1008624">Lv et&#xa0;al.</ext-link> proposed that different adaptive patterns played important roles under complex drought tolerance based on integrated transcriptome and metabolome profiling.</p>
</sec>
<sec id="s4">
<title>Mapping quantitative disease resistance loci</title>
<p>Mapping QDR locus is a critical for cloning and utilizing the resistance gene resources in crops. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.918437">Bai et&#xa0;al.</ext-link> mapped three new QDR loci from wheat cultivar &#x201c;Pascal&#x201d; with resistance to stripe rust at the adult plant stage using a recombinant inbred line population. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.946700">Zhang et&#xa0;al.</ext-link> found four possible new FHB resistance loci in hard winter wheat germplasm using a multi-locus genome-wide association study. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.954546">Xia et&#xa0;al.</ext-link> fine mapped a Fusarium ear rot resistance gene in maize by QTL mapping and RNA sequencing. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.968924">Zhu et&#xa0;al.</ext-link> performed a high-resolution mapping of a <italic>Helminthosporium turcium resistance 3</italic>-like locus against north corn leaf blight.</p>
</sec>
<sec id="s5">
<title>Creation of disease resistant distant hybrid germplasm</title>
<p>Distant hybrid material with disease resistance is an important bridge for crop breeding (<xref ref-type="bibr" rid="B6">Liu et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B5">Liu et&#xa0;al., 2020</xref>). <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.918508">Tian et&#xa0;al.</ext-link> developed and characterized the <italic>Triticum aestivum-Aegilops longissima</italic> recombinants using the CS <italic>ph1b</italic> mutant as an inducing tool, which harbors a novel powdery mildew resistance gene <italic>Pm6Sl</italic>. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.928014">Duan et&#xa0;al.</ext-link> narrowed down the candidate region of stripe rust resistance gene <italic>Yr83</italic> using newly developed wheat-rye chromosome translocations. These small-segment translocation materials are promising for the improvement of wheat cultivars. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fpls.2022.992016">Ren et&#xa0;al.</ext-link> developed new wheat-rye 6R, 6RS, and 6RL addition lines, and identified novel resistance genes to stripe rust and powdery mildew.</p>
</sec>
<sec id="s6" sec-type="author-contributions">
<title>Author contributions</title>
<p>CL compiled the contributions from all authors. All authors approved the final version of the manuscript and approved it for publication.</p>
</sec>
<sec id="s7" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported financially supported by Taishan Scholars Project (tsqn201812123) and National Natural Science Foundation of China (31971847).</p>
</sec>
<sec id="s8" sec-type="acknowledgement">
<title>Acknowledgments</title>
<p>We greatly appreciate the contributions from all the authors and reviewers as well as the support of the editorial office of Frontiers in Plant Science.</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
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