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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2021.743993</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Regulation of Tocopherol Biosynthesis During Fruit Maturation of Different <italic>Citrus</italic> Species</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Rey</surname> <given-names>Florencia</given-names></name>
<uri xlink:href="http://loop.frontiersin.org/people/1412819/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Zacarias</surname> <given-names>Lorenzo</given-names></name>
<uri xlink:href="http://loop.frontiersin.org/people/310396/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Rodrigo</surname> <given-names>Mar&#x00ED;a Jes&#x00FA;s</given-names></name>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/307633/overview"/>
</contrib>
</contrib-group>
<aff><institution>Departamento de Biotecnolog&#x00ED;a de Alimentos, Instituto de Agroqu&#x00ED;mica y Tecnolog&#x00ED;a de Alimentos, Consejo Superior de Investigaciones Cient&#x00ED;ficas</institution>, <addr-line>Valencia</addr-line>, <country>Spain</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Itay Maoz, Agricultural Research Organization (ARO), Israel</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Laura Perez Fons, Royal Holloway, University of London, United Kingdom; Renata Szyma&#x0144;ska, AGH University of Science and Technology, Poland</p></fn>
<corresp id="c001">&#x002A;Correspondence: Mar&#x00ED;a Jes&#x00FA;s Rodrigo, <email>mjrodrigo@iata.csic.es</email></corresp>
<fn fn-type="other" id="fn004"><p>This article was submitted to Plant Metabolism and Chemodiversity, a section of the journal Frontiers in Plant Science</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>06</day>
<month>10</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>12</volume>
<elocation-id>743993</elocation-id>
<history>
<date date-type="received">
<day>19</day>
<month>07</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>17</day>
<month>09</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2021 Rey, Zacarias and Rodrigo.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Rey, Zacarias and Rodrigo</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Tocopherols are plant-derived isoprenoids with vitamin E activity, which are involved in diverse physiological processes in plants. Although their biosynthesis has been extensively investigated in model plants, their synthesis in important fruit crops as <italic>Citrus</italic> has scarcely been studied. Therefore, the aim of this work was to initiate a physiological and molecular characterization of tocopherol synthesis and accumulation in <italic>Citrus</italic> fruits during maturation. For that purpose, we selected fruit of the four main commercial species: grapefruit (<italic>Citrus paradisi</italic>), lemon (<italic>Citrus limon</italic>), sweet orange (<italic>Citrus sinensis</italic>), and mandarin (<italic>Citrus clementina</italic>), and analyzed tocopherol content and the expression profile of 14 genes involved in tocopherol synthesis during fruit maturation in both the flavedo and pulp. The selected genes covered the pathways supplying the tocopherol precursors homogentisate (HGA) (<italic>TAT1</italic> and <italic>HPPD</italic>) and phytyl pyrophosphate (PPP) (<italic>VTE5</italic>, <italic>VTE6</italic>, <italic>DXS1</italic> and <italic>2</italic>, <italic>GGPPS1</italic> and <italic>6</italic>, and <italic>GGDR</italic>) and the tocopherol-core pathway (<italic>VTE2</italic>, <italic>VTE3a</italic>, <italic>VTE3b</italic>, <italic>VTE1</italic>, and <italic>VTE4</italic>). Tocopherols accumulated mainly as &#x03B1;- and &#x03B3;-tocopherol, and &#x03B1;-tocopherol was the predominant form in both tissues. Moreover, differences were detected between tissues, among maturation stages and genotypes. Contents were higher in the flavedo than in the pulp during maturation, and while they increased in the flavedo they decreased or were maintained in the pulp. Among genotypes, mature fruit of lemon accumulated the highest tocopherol content in both the flavedo and the pulp, whereas mandarin fruit accumulated the lowest concentrations, and grapefruit and orange had intermediate levels. Higher concentrations in the flavedo were associated with a higher expression of all the genes evaluated, and different genes are suitable candidates to explain the temporal changes in each tissue: (1) in the flavedo, the increase in tocopherols was concomitant with the up-regulation of <italic>TAT1</italic> and <italic>VTE4</italic>, involved in the supply of HGA and the shift of &#x03B3;- into &#x03B1;-tocopherol, respectively; and (2) in the pulp, changes paralleled the expression of <italic>VTE6</italic>, <italic>DXS2</italic>, and <italic>GGDR</italic>, which regulate PPP availability. Also, certain genes (i.e., <italic>VTE6</italic>, <italic>DXS2</italic>, and <italic>GGDR</italic>) were co-regulated and shared a similar pattern during maturation in both tissues, suggesting they are developmentally modulated.</p>
</abstract>
<kwd-group>
<kwd>tocopherol</kwd>
<kwd>vitamin E</kwd>
<kwd><italic>Citrus</italic></kwd>
<kwd>fruit</kwd>
<kwd>ripening</kwd>
<kwd>tocopherol gene expression</kwd>
</kwd-group>
<contract-sponsor id="cn001">Ministerio de Ciencia e Innovaci&#x00F3;n<named-content content-type="fundref-id">10.13039/501100004837</named-content></contract-sponsor>
<contract-sponsor id="cn002">Generalitat Valenciana<named-content content-type="fundref-id">10.13039/501100003359</named-content></contract-sponsor>
<contract-sponsor id="cn003">Agencia Nacional de Investigaci&#x00F3;n e Innovaci&#x00F3;n<named-content content-type="fundref-id">10.13039/100008725</named-content></contract-sponsor>
<counts>
<fig-count count="8"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="67"/>
<page-count count="15"/>
<word-count count="12141"/>
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</article-meta>
</front>
<body>
<sec id="S1" sec-type="intro">
<title>Introduction</title>
<p>Tocopherols are lipid-soluble isoprenoids of the tocochromanol family which are mainly synthesized in photosynthetic organisms (<xref ref-type="bibr" rid="B23">Fritsche et al., 2017</xref>; <xref ref-type="bibr" rid="B40">M&#x00E8;ne-Saffran&#x00E9;, 2017</xref>). Their chemical structure consists of a polar chromanol ring, originated from homogentisate (HGA), and a lipophilic isoprenoid side chain derived from a specific prenyl pyrophosphate donor. While HGA is the common precursor for all tocochromanols, the polyprenyl precursor varies according to the type of tocochromanol and is phytyl pyrophosphate (PPP) for tocopherol synthesis (<xref ref-type="bibr" rid="B40">M&#x00E8;ne-Saffran&#x00E9;, 2017</xref>). Additionally, according to the position and degree of methylation of the chromanol ring, four natural sub-forms can exist: &#x03B4;- (one methyl group), &#x03B2;- and &#x03B3;- (two methyl groups), and &#x03B1;-tocopherol (three methyl groups). Tocopherols are of great importance because, together with tocotrienols, they are the only natural compounds exhibiting vitamin E activity in animal cells and are essential as dietary nutrients (<xref ref-type="bibr" rid="B61">Traber and Sies, 1996</xref>). In plants, tocopherols play diverse physiological functions, of which their role as antioxidants, either scavenging peroxyl radicals or quenching reactive oxygen species, is probable the most notable (<xref ref-type="bibr" rid="B28">Havaux et al., 2005</xref>; <xref ref-type="bibr" rid="B41">M&#x00E8;ne-Saffran&#x00E9; et al., 2010</xref>). Nonetheless, other functions have been recently described for tocopherols in plants, including their involvement in photo-assimilate transport, carbohydrate metabolism, cellular signaling and plant&#x2019;s response to biotic and abiotic stresses (<xref ref-type="bibr" rid="B22">Falk and Munn&#x00E9;-Bosch, 2010</xref>; <xref ref-type="bibr" rid="B42">Mu&#x00F1;oz and Munn&#x00E9;-Bosch, 2019</xref>; <xref ref-type="bibr" rid="B38">Ma et al., 2020b</xref>).</p>
<p>The tocopherol biosynthesis pathway (<xref ref-type="fig" rid="F1">Figure 1</xref>) has been well-characterized in the last decades, with all the vitamin E biosynthetic genes (VTE genes) encoding the enzymes catalyzing the core steps of tocopherol synthesis identified (<xref ref-type="bibr" rid="B23">Fritsche et al., 2017</xref>; <xref ref-type="bibr" rid="B40">M&#x00E8;ne-Saffran&#x00E9;, 2017</xref>; <xref ref-type="bibr" rid="B42">Mu&#x00F1;oz and Munn&#x00E9;-Bosch, 2019</xref>). Tocopherol synthesis is initiated by the condensation of HGA with PPP, a reaction regulated by homogentisate phytyl transferase (HPT; <italic>VTE2</italic>) that results in the formation of 2-methyl-6-phytyl-1,4-benzoquinol (MPBQ) (<xref ref-type="bibr" rid="B17">Collakova and DellaPenna, 2001</xref>). After this step, the pathway can split into two branches depending on the subsequent reaction of MPBQ, leading toward the synthesis of &#x03B4;- and &#x03B2;-tocopherol or &#x03B3;- and &#x03B1;-tocopherol. Then, MPBQ can either be directly cyclized into &#x03B4;-tocopherol, by the tocopherol cyclase (TC; <italic>VTE1</italic>), or it can be first methylated into 2,3-dimethyl-6-phytyl-1,4-benzoquinol (DMPBQ), by a MPBQ methyltransferase (MPBQ-MT; <italic>VTE3</italic>). The resulting product DMPBQ is then converted into &#x03B3;-tocopherol by the same TC (<italic>VTE1</italic>) mentioned before. The final step of tocopherol synthesis is the methylation of &#x03B4;- and &#x03B3;-tocopherol into &#x03B2;- and &#x03B1;-tocopherol, respectively, which is catalyzed by the &#x03B3;-tocopherol methyltransferase (&#x03B3;-TMT; <italic>VTE4</italic>). These steps represent the tocopherol-core pathway, and of these enzymes only HPT (<italic>VTE2</italic>) is considered exclusive to tocopherol synthesis, while MPBQ-MT (<italic>VTE3</italic>), TC (<italic>VTE1</italic>), and &#x03B3;-TMT (<italic>VTE4</italic>) are also involved in the synthesis of the other tocochromanols (<xref ref-type="bibr" rid="B23">Fritsche et al., 2017</xref>; <xref ref-type="bibr" rid="B40">M&#x00E8;ne-Saffran&#x00E9;, 2017</xref>). <italic>VTE2</italic> has been reported to be a limiting step in tocopherol synthesis in seeds and leaves of Arabidopsis and other model plants (<xref ref-type="bibr" rid="B55">Savidge et al., 2002</xref>; <xref ref-type="bibr" rid="B18">Collakova and DellaPenna, 2003a</xref>). However, it does not seem to limit tocopherol synthesis in fruit of species such as tomato, olive, and mandarin (<xref ref-type="bibr" rid="B47">Quadrana et al., 2013</xref>; <xref ref-type="bibr" rid="B25">Georgiadou et al., 2019</xref>; <xref ref-type="bibr" rid="B49">Rey et al., 2021a</xref>), where <italic>VTE3</italic> appears to play a more important role regulating tocopherol content (<xref ref-type="bibr" rid="B47">Quadrana et al., 2013</xref>; <xref ref-type="bibr" rid="B49">Rey et al., 2021a</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Schematic representation of tocopherol biosynthetic pathway in plants. Phytyl-P, phytyl phosphate; G3P, glyceraldehyde 3-phosphate; IPP, isopentenyl diphosphate; DMAPP, dimethylallyl diphosphate; GGPP, geranylgeranyl diphosphate; PPP, phytyl pyrophosphate; <sc>L</sc>-Tyr, amino acid <sc>L</sc>-tyrosine; HPP, 4-hydroxyphenylpyruvate; HGA, homogentisate; MPBQ, 2-methyl-6-phytyl-1,4-benzoquinol; DMPBQ, 2,3-dimethyl-6-phytyl-1,4-benzoquinol; VTE5, phytol kinase; VTE6, phytyl-P kinase; DXS, 1-deoxy-<sc>D</sc>-xylulose-5-phosphate synthase; GGPPS, GGPP synthase; GGDR, GGPP reductase; TAT, tyrosine aminotransferase; HPPD, HPP dioxygenase; VTE2, homogentisate phytyltransferase (HPT); VTE3, MPBQ methyltransferase (MPBQ-MT); VTE1, tocopherol cyclase (TC); VTE4, tocopherol methyltransferase (&#x03B3;-TMT).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-12-743993-g001.tif"/>
</fig>
<p>Tocopherol content in plant cells is also highly dependent on the availability of the precursors HGA and PPP (<xref ref-type="bibr" rid="B40">M&#x00E8;ne-Saffran&#x00E9;, 2017</xref>; <xref ref-type="bibr" rid="B45">Pellaud and M&#x00E8;ne-Saffran&#x00E9;, 2017</xref>). In plants, the precursor HGA originates in a two-step reaction from the degradation of the amino acid <sc>L</sc>-tyrosine (<sc>L</sc>-Tyr) synthetized in the shikimate (SK) pathway. <sc>L</sc>-Tyr is converted into 4-hydroxyphenylpyruvate (HPP) by a tyrosine aminotransferase (TATs), and then transformed into HGA by a HPP dioxygenase (HPPD) (<xref ref-type="fig" rid="F1">Figure 1</xref>). The loss of function of either <italic>TAT</italic> or <italic>HPPD</italic> in Arabidopsis has resulted in a reduction of tocopherol levels (<xref ref-type="bibr" rid="B43">Norris et al., 1998</xref>; <xref ref-type="bibr" rid="B50">Riewe et al., 2012</xref>), while the overexpression of these genes only modestly increased total tocopherols in leaves and seeds (<xref ref-type="bibr" rid="B62">Tsegaye et al., 2002</xref>; <xref ref-type="bibr" rid="B32">Karunanandaa et al., 2005</xref>). In fleshy fruit, such as tomato and mango, the role of <italic>HPPD</italic> in tocopherol accumulation has been reinforced, as higher accumulation of <italic>HPPD</italic> transcripts has been associated with genotypes containing high tocopherols levels (<xref ref-type="bibr" rid="B47">Quadrana et al., 2013</xref>; <xref ref-type="bibr" rid="B56">Singh et al., 2017</xref>). Recently, it has been shown that engineering the chorismate&#x2013;tyrosine pathway in tomato fruit to produce HPP in combination with the overexpression of Arabidopsis <italic>HPPD</italic> resulted in a moderate increment in tocopherols (<xref ref-type="bibr" rid="B12">Burgos et al., 2021</xref>). The other precursor necessary for tocopherol synthesis, PPP, can be derived from geranylgeranyl pyrophosphate (GGPP), produced in the MEP pathway, or alternatively from the recycling of phytol formed in the degradation of chlorophylls (<xref ref-type="fig" rid="F1">Figure 1</xref>). Two enzymes are involved in the supply of PPP <italic>via</italic> the recycling of phytol: phytol kinase (<italic>VTE5</italic>) and phytyl phosphate kinase (<italic>VTE6</italic>) (<xref ref-type="bibr" rid="B63">Valentin et al., 2006</xref>; <xref ref-type="bibr" rid="B65">vom Dorp et al., 2015</xref>). VTE5 appears to be a key enzyme regulating tocopherol content in fruits of tomato and olive, controlling the supply of PPP toward the tocopherol-core pathway (<xref ref-type="bibr" rid="B26">Georgiadou et al., 2015</xref>; <xref ref-type="bibr" rid="B2">Almeida et al., 2016</xref>). Nonetheless, in ripe tomato and mandarin fruits, tocopherol accumulation appears to be more influenced by the up-regulation of genes of the MEP pathway, such as <italic>DXS</italic> and <italic>GGDR</italic> (<xref ref-type="bibr" rid="B47">Quadrana et al., 2013</xref>; <xref ref-type="bibr" rid="B1">Almeida et al., 2015</xref>; <xref ref-type="bibr" rid="B27">Gramegna et al., 2019</xref>; <xref ref-type="bibr" rid="B49">Rey et al., 2021a</xref>). While the gene <italic>DXS</italic> regulates the influx into the MEP pathway, <italic>GGDR</italic> controls the final reduction of GGPP into PPP, and therefore its final availability for condensation with HGA (<xref ref-type="bibr" rid="B21">Est&#x00E9;vez et al., 2001</xref>; <xref ref-type="bibr" rid="B45">Pellaud and M&#x00E8;ne-Saffran&#x00E9;, 2017</xref>).</p>
<p>Tocopherol accumulation has been mainly studied in leaves and seeds, but they have also been detected in fruits, stems, roots, flowers, and other plant tissues (<xref ref-type="bibr" rid="B30">Horvath et al., 2006a</xref>). In general, &#x03B1;-tocopherol is the main form found in leaves, while &#x03B3;-tocopherol is the predominant in seeds of most species (<xref ref-type="bibr" rid="B30">Horvath et al., 2006a</xref>). In fruits, &#x03B1;-tocopherol seems to be the main isoform accumulated (<xref ref-type="bibr" rid="B16">Chun et al., 2006</xref>; <xref ref-type="bibr" rid="B30">Horvath et al., 2006a</xref>), with variable contents depending on the species and through fruit ripening (<xref ref-type="bibr" rid="B44">Osuna-Garc&#x00ED;a et al., 1998</xref>; <xref ref-type="bibr" rid="B4">Almeida et al., 2011</xref>; <xref ref-type="bibr" rid="B47">Quadrana et al., 2013</xref>; <xref ref-type="bibr" rid="B26">Georgiadou et al., 2015</xref>, <xref ref-type="bibr" rid="B25">2019</xref>). In recent years, great advances have been made into the regulation of tocopherol biosynthesis in fruit of different species, such as tomato (<xref ref-type="bibr" rid="B4">Almeida et al., 2011</xref>, <xref ref-type="bibr" rid="B2">2016</xref>; <xref ref-type="bibr" rid="B47">Quadrana et al., 2013</xref>; <xref ref-type="bibr" rid="B27">Gramegna et al., 2019</xref>; <xref ref-type="bibr" rid="B12">Burgos et al., 2021</xref>), pepper (<xref ref-type="bibr" rid="B9">Arango and Heise, 1998</xref>; <xref ref-type="bibr" rid="B33">Koch et al., 2002</xref>), olive (<xref ref-type="bibr" rid="B26">Georgiadou et al., 2015</xref>, <xref ref-type="bibr" rid="B24">2016</xref>, <xref ref-type="bibr" rid="B25">2019</xref>), and mango (<xref ref-type="bibr" rid="B56">Singh et al., 2017</xref>). These studies concluded that tocopherol accumulation in fruit is mainly transcriptionally regulated, and that tocopherol biosynthetic genes are modulated in a temporal manner, and also influenced by environmental factors (<xref ref-type="bibr" rid="B4">Almeida et al., 2011</xref>, <xref ref-type="bibr" rid="B3">2020</xref>; <xref ref-type="bibr" rid="B47">Quadrana et al., 2013</xref>; <xref ref-type="bibr" rid="B24">Georgiadou et al., 2016</xref>, <xref ref-type="bibr" rid="B25">2019</xref>; <xref ref-type="bibr" rid="B56">Singh et al., 2017</xref>; <xref ref-type="bibr" rid="B27">Gramegna et al., 2019</xref>).</p>
<p><italic>Citrus</italic> is one of the world&#x2019;s most important fruit crops, being highly demanded for fresh consumption and juice processing (<xref ref-type="bibr" rid="B58">Spreen et al., 2020</xref>). This genus is characterized for its genotypic and phenotypic diversity (<xref ref-type="bibr" rid="B66">Wu et al., 2018</xref>), with a vast range of fruits with a different composition of nutrients and bioactive compounds (<xref ref-type="bibr" rid="B53">Rodrigo and Zacar&#x00ED;as, 2006</xref>; <xref ref-type="bibr" rid="B13">Cano et al., 2008</xref>; <xref ref-type="bibr" rid="B37">Ma et al., 2020a</xref>). Current information about tocopherol contents in <italic>Citrus</italic> fruit is very limited. Tocopherols accumulate in the flavedo (external colored part of the peel) of mandarin, orange, lemon, grapefruit, and other less known species in the range of 65&#x2013;130 &#x03BC;g g<sup>&#x2013;1</sup>, and mainly in the forms of &#x03B1;- and &#x03B3;-tocopherol, with composition varying according to the specie (<xref ref-type="bibr" rid="B10">Assefa et al., 2017</xref>; <xref ref-type="bibr" rid="B49">Rey et al., 2021a</xref>, <xref ref-type="bibr" rid="B48">b</xref>). In the pulp, tocopherols have also been detected in fruit of mandarin, grapefruit, and orange in the form of &#x03B1;-tocopherol and at concentrations lower than in the flavedo (1.6&#x2013;25 &#x03BC;g g<sup>&#x2013;1</sup>) (<xref ref-type="bibr" rid="B16">Chun et al., 2006</xref>; <xref ref-type="bibr" rid="B14">Carde&#x00F1;osa et al., 2015</xref>). Recently, genes involved in the tocopherol-core pathway as well as genes regulating the supply of the precursors HGA and PPP have been identified in the <italic>Citrus</italic> genome. Analysis of their transcriptional profiling in the flavedo of mandarins and grapefruits in response to cold stress suggested candidate genes and mechanisms regulating tocopherol accumulation in each specie (<xref ref-type="bibr" rid="B49">Rey et al., 2021a</xref>, <xref ref-type="bibr" rid="B48">b</xref>). However, the temporal changes of tocopherols and the regulation of their synthesis during maturation of <italic>Citrus</italic> fruit have not been explored yet. Therefore, the aim of the present work was to perform a comparative study of tocopherol accumulation during on-tree fruit maturation in different <italic>Citrus</italic> genotypes belonging to the main horticultural <italic>Citrus</italic> groups: orange, mandarin, lemon, and grapefruit. The relationship between tocopherol accumulation and the expression of tocopherol-biosynthetic genes in the flavedo and pulp of fruit from the selected species and ripening stages was also investigated.</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="S2.SS1">
<title>Plant Material</title>
<p>Fruit of four different genotypes belonging to the main horticultural groups of <italic>Citrus</italic> species: grapefruit (<italic>Citrus paradisi</italic> Macfad.) cv. &#x2018;Marsh&#x2019;, lemon [<italic>Citrus limon</italic> (L.) Burm. F] cv. &#x2018;Fino&#x2019;, sweet orange [<italic>Citrus sinensis</italic> (L.) Osbeck] cv. &#x2018;Washington Navel&#x2019;, and mandarin (<italic>Citrus clementina</italic> Hort. ex Tanaka) cv. &#x2018;Clemenules&#x2019;, were selected for this study. Trees were located in the Citrus Germplasm Bank at the Instituto Valenciano de Investigaciones Agrarias (IVIA) located in Moncada (Valencia, Spain; 39&#x00B0;35&#x2032;22&#x2033;N, 0&#x00B0;23&#x2032;40&#x2033;W; 55 m elevation above the sea level), and cultivated under standard agronomical conditions. Fruits were harvested from adult trees (more than 10 years old) grafted on Carrizo citrange rootstock [<italic>C. sinensis</italic> (L.) Osb. &#x00D7; <italic>Poncirus trifoliata</italic> (L.) Raf.], growing in a loamy-sand soil with drip irrigation. Fertilization, pruning, pest management, and other cultural conditions were performed according to the protocol established by IVIA for the Citrus Germplasm Bank. Fruits were harvested at four maturation stages: immature green (IG), mature green (MG), breaker (Br), and mature fruit (M), and the specific harvest dates for each genotype are detailed in <xref ref-type="supplementary-material" rid="DS1">Supplementary Table 1</xref>. For each genotype and sampling date three biological replicates of 10&#x2013;15 fruits, collected randomly from the outside of the tree canopy of 2&#x2013;3 trees, were used. Fruits were delivered to the laboratory and selected for color uniformity and free of any peel defect or damage, and the flavedo (external colored layer of fruit peel) and pulp (juice vesicles) were excised with a scalpel, frozen in liquid nitrogen and ground to a fine powder using an electric grinder with liquid nitrogen. Samples were stored at &#x2212;80&#x00B0;C until analysis.</p>
</sec>
<sec id="S2.SS2">
<title>Tocopherol Extraction and Quantification</title>
<p>Tocopherol extraction of the flavedo and pulp, and quantification by HPLC coupled to fluorescence detector, was carried out following the procedure described in <xref ref-type="bibr" rid="B49">Rey et al. (2021a)</xref>. In summary, flavedo and pulp material (200 and 500 mg, respectively) were extracted with methanol, Tris buffer (50 mM Tris pH 7.5) with 1 M NaCl, and dichloromethane in a mortar and pestle with sea sand as an abrasive. After vortex-mixing, samples were sonicated for 5 min and centrifuged for 10 min at 3000 &#x00D7; <italic>g</italic> and 4&#x00B0;C. The dichloromethane phase was recovered in a glass tube, and the methanol phase was re-extracted with dichloromethane. The pooled dichloromethane extracts were then dried under nitrogen gas and stored at &#x2212;20&#x00B0;C until HPLC analysis. For quantification, dried extracts were re-suspended in ethyl acetate (500&#x2013;700 &#x03BC;l) and a dilution (1:15 for flavedo extracts and 1:2 for pulps) was carried out. For analysis, 20 &#x03BC;l of the diluted extract were injected in a Waters HPLC system (Acquity<sup>&#x00AE;</sup> Arc<sup>TM</sup>, Waters) coupled with a fluorescence detector (2475 FLR Detector, Waters). Tocopherol separation was done using a C30 column, 150 mm &#x00D7; 4.6 mm, 3 &#x03BC;m (YMC, Teknokroma, Spain), and a ternary gradient elution with methanol, water, and methyl <italic>tert</italic>-butyl ether at 1 ml min<sup>&#x2013;1</sup> flow (<xref ref-type="bibr" rid="B49">Rey et al., 2021a</xref>). Elution of tocopherols was monitored by fluorescence at an excitation wavelength of 296 nm and emission wavelength of 340 nm. Identification and quantification of the different tocopherols was achieved by comparison with the retention times and calibration curves for tocopherol standards (Sigma-Aldrich). All procedures were carried out on ice and under dim light to prevent photo-degradation. Total tocopherol content was calculated as the sum of the tocopherol isoforms, and concentrations are expressed as &#x03BC;g g of fresh weight (FW). Results are the mean of two biological replicates (mean &#x00B1; SD).</p>
</sec>
<sec id="S2.SS3">
<title>RNA Extraction and cDNA Synthesis</title>
<p>Extraction of total RNA was different according to the fruit tissue. Total RNA was isolated from flavedo tissue using the RNeasy Plant Mini Kit (Qiagen), while the extraction from the pulp was done using the protocol described in <xref ref-type="bibr" rid="B52">Rodrigo et al. (2004)</xref>. Once total RNA was isolated, DNA traces were removed by treating RNA with DNase I (DNA free, DNase treatment and removal, and Ambion) following the manufacturer&#x2019;s instructions. RNA concentration was later quantified by spectrophotometric analysis (NanoDrop, Thermo Fisher Scientific) and RNA quality was verified by agarose-gel electrophoresis with GoodView<sup>&#x00AE;</sup> Nucleic Acid Stain (SBS Genetech). For cDNA synthesis, 5 &#x03BC;g of total RNA were reverse-transcribed using the SuperScript III Reverse Transcriptase (Invitrogen) in a final volume of 20 &#x03BC;l, following the manufacturer&#x2019;s procedure.</p>
</sec>
<sec id="S2.SS4">
<title>Gene Expression Analysis by Quantitative Real-Time PCR</title>
<p>Gene expression was evaluated by quantitative real-time PCR in a LightCycler 480 instrument (Roche), using the LightCycler 480 SYBRGreen I Master kit (Roche) and following the manufacturer&#x2019;s instructions. Previously published oligonucleotides primers were used for the amplification of the following <italic>C. sinensis</italic> genes related to tocopherol synthesis: <italic>DXS1</italic>, <italic>DXS2</italic>, <italic>GGPPS1</italic>, <italic>GGPPS6</italic>, <italic>GGDR</italic>, <italic>VTE5</italic>, <italic>VTE6</italic>, <italic>TAT1</italic>, <italic>HPPD</italic>, <italic>VTE2</italic>, <italic>VTE3a</italic>, <italic>VTE3b</italic>, <italic>VTE1</italic>, and <italic>VTE4</italic> (<xref ref-type="bibr" rid="B49">Rey et al., 2021a</xref>). The primers sequences used for RT-qPCR analyses is listed in <xref ref-type="supplementary-material" rid="DS1">Supplementary Table 2</xref>. For all the genes analyzed, RT-qPCR conditions consisted of an initial pre-incubation at 95&#x00B0;C for 10 min, followed by 40 cycles of 10 s at 95&#x00B0;C for denaturation, 10 s at 59&#x00B0;C for annealing, and 10 s at 72&#x00B0;C for extension. For each amplification reaction 1 ml of 10 times diluted first-strand cDNA, containing approximately 100 ng of cDNA, was used. Specificity of the PCR reaction in the different <italic>Citrus</italic> species was assessed by the melting point analysis (Tm) after the amplification steps. For expression measurements, we used the LightCycler 480 Software release 1.5.0, version 1.5.0.39 (Roche) and calculated relative expression levels using the Relative Expression Software Tool (REST) (<xref ref-type="bibr" rid="B46">Pfaffl et al., 2002</xref>) with an external reference sample. The reference sample consisted of flavedo pool of a mix of cDNA from immature to mature fruit of different <italic>Citrus</italic> species and cultivars, including those used in this work. The expression value obtained for each gene in the reference sample was set to 1, and it was used for the calculation of relative gene expression in all the flavedo and pulp samples analyzed in this work. Normalization was performed using <italic>ACTIN</italic> as a housekeeping gene (<xref ref-type="bibr" rid="B6">Al&#x00F3;s et al., 2014</xref>; <xref ref-type="bibr" rid="B67">Zacar&#x00ED;as-Garc&#x00ED;a et al., 2021</xref>). Results are the mean of three biological replicates (mean &#x00B1; SE).</p>
</sec>
<sec id="S2.SS5">
<title>Correlation Matrix and Networks</title>
<p>To gain insight into possible common candidate genes regulating tocopherol accumulation in <italic>Citrus</italic> fruit, a correlation matrix and network was built independently for the flavedo and pulp, based on procedures described by <xref ref-type="bibr" rid="B20">Diretto et al. (2010)</xref>. First, a Pearson&#x2019;s correlation analysis was carried out for each fruit tissue, taking into account all the metabolite (tocopherol contents) and expression data (relative gene expression levels). For each tissue, the input data for the calculation of correlation coefficients was the fold-change (log2 transformed) relative to the IG stage of grapefruit for all the variables, species, and maturation stages. The results were displayed as a matrix, in which each circle represents the correlation between the gene/metabolite in the column heading and the gene/metabolite in the row heading, with their size and color intensity being proportional to the absolute correlation coefficient. Correlation coefficients values are summarized in <xref ref-type="supplementary-material" rid="DS1">Supplementary Tables 7</xref>, <xref ref-type="supplementary-material" rid="DS1">8</xref>, where significant correlations are marked with an asterisk (<italic>p</italic>-value &#x2264; 0.05). Correlation analysis were carried in RStudio (version 1.3.1093, RStudio Team, PBC, Boston, MA, United States) using the function &#x201C;<italic>cormat</italic>&#x201D; and visualized using the function &#x201C;<italic>corrplot</italic>&#x201D; of the package &#x201C;<italic>ggplot2</italic>.&#x201D; Subsequently, each correlation matrix was transformed into a correlation network to highlight the different connections between tocopherol contents and gene expression in the different tissues, and also possible co-regulation among genes. For the construction of the correlation networks only significant correlations were taken into account (<italic>p</italic>-value &#x2264; 0.05), and the networks were assembled manually using Cytoscape version 3.8.2 (National Institute of General Medical Sciences, Bethesda, MD, United States). The correlation network was displayed in a graph illustrating all-versus-all correlations (only significant) among the variables analyzed and it is composed of nodes, which represented tocopherol contents and gene expression levels, and edge lines which represented the links between those nodes. Positive correlations are represented in red and negative ones in blue, and color intensity is proportional to the absolute correlation coefficient.</p>
</sec>
<sec id="S2.SS6">
<title>Statistical Analyses</title>
<p>Tocopherol contents and relative gene expression data were subjected to a one-way analysis of variance (ANOVA) followed by the multiple comparison Tukey&#x2019;s test (significance level at <italic>p</italic> &#x2264; 0.05), to determine significant mean differences. This analysis was carried to assessed differences among maturation stages for each specie, and additionally the same analysis was done to assess differences among species for a specific maturation stage. The InfoStat software (version 2018, Grupo InfoStat, C&#x00F3;rdoba, Argentina) was used for the statistical analyses.</p>
</sec>
</sec>
<sec id="S3" sec-type="results">
<title>Results</title>
<sec id="S3.SS1">
<title>Changes in Tocopherol Content During Fruit Maturation of Four <italic>Citrus</italic> Species: Grapefruit (<italic>Citrus paradisi</italic>), Lemon (<italic>Citrus limon</italic>), Sweet Orange (<italic>Citrus sinensis</italic>), and Mandarin (<italic>Citrus clementine</italic>) During Ripening</title>
<p>Tocopherols were detected in the flavedo and pulp of the four <italic>Citrus</italic> genotypes selected at the four successive stages of fruit maturation (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F3">3</xref>). The isoforms &#x03B1;- and &#x03B3;-tocopherol were identified in all samples, while the presence of &#x03B4;-tocopherol was only detected in a few samples at concentrations below 10 and 6 ng g<sup>&#x2013;1</sup> FW in the flavedo and pulp, respectively. &#x03B1;-Tocopherol was the predominant form in all species and stages, accounting on average for 85% of total tocopherols in the flavedo and 99% in the pulp. In the flavedo of all species, tocopherol content was higher than in the pulp and contents gradually increased with maturation (<xref ref-type="fig" rid="F2">Figure 2</xref>). By contrast, total tocopherols in the pulp decreased sharply after the IG stage and, at the mature (M) stage, the content was between 3 and 8-times lower than in IG, with the exception of lemon where levels remained nearly constant during ripening (<xref ref-type="fig" rid="F3">Figure 3</xref>). As a result, differences between tissues became greater during maturation, with contents being 2&#x2013;7 times higher in the flavedo than in the pulp at the IG stage and more than 20&#x2013;50 times higher at full maturity (M) (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F3">3</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Fruit external appearance <bold>(A)</bold> and total tocopherol <bold>(B)</bold>, &#x03B1;-tocopherol <bold>(C)</bold>, and &#x03B3;-tocopherol content <bold>(D)</bold> in the flavedo during fruit maturation of grapefruit (<italic>C. paradisi</italic>), lemon (<italic>C. limon</italic>), sweet orange (<italic>C. sinensis</italic>), and mandarin (<italic>C. clementine</italic>). Contents are expressed as &#x03BC;g g<sup>&#x2013; 1</sup> of fresh weight. The data are mean &#x00B1; SE of at least two replicates (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 9</xref>). Maturation stages correspond to immature green (IG), mature green (MG), breaker (Br), and mature (M). Different letters indicate significant mean differences among maturation stages for each fruit specie (Tukey&#x2019;s test, <italic>p</italic> &#x2264; 0.05).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-12-743993-g002.tif"/>
</fig>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>Fruit internal appearance <bold>(A)</bold> and total tocopherol <bold>(B)</bold>, &#x03B1;-tocopherol <bold>(C)</bold>, and &#x03B3;-tocopherol content <bold>(D)</bold> in the pulp during fruit maturation of grapefruit (<italic>C. paradisi</italic>), lemon (<italic>C. limon</italic>), sweet orange (<italic>C. sinensis</italic>), and mandarin (<italic>C. clementine</italic>). Contents are expressed as &#x03BC;g g<sup>&#x2013; 1</sup> of fresh weight. The data are mean &#x00B1; SE of at least two replicates (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 10</xref>). Maturation stages correspond to immature green (IG), mature green (MG), breaker (Br), and mature (M). Different letters indicate significant mean differences among maturation stages for each fruit specie (Tukey&#x2019;s test, <italic>p</italic> &#x2264; 0.05).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-12-743993-g003.tif"/>
</fig><p>Differences in tocopherol content in the flavedo and pulp were observed among genotypes (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F3">3</xref> and <xref ref-type="supplementary-material" rid="DS1">Supplementary Tables 3</xref>, <xref ref-type="supplementary-material" rid="DS1">4</xref>). At the IG stage, total tocopherol contents (as the sum of &#x03B1;- and &#x03B3;-tocopherol) were significantly higher in the flavedo of lemon (&#x223C;101 &#x03BC;g g<sup>&#x2013;1</sup> FW), followed by sweet orange (&#x223C;75 &#x03BC;g g<sup>&#x2013;1</sup> FW), and almost 2- and 4-times lower in the flavedo of grapefruit (&#x223C;45 &#x03BC;g g<sup>&#x2013;1</sup> FW) and mandarin (&#x223C;23 &#x03BC;g g<sup>&#x2013;1</sup> FW), respectively (<xref ref-type="fig" rid="F2">Figure 2</xref> and <xref ref-type="supplementary-material" rid="DS1">Supplementary Table 3</xref>). During maturation, total tocopherols increased in the four species, but the magnitude of the increase varied among species (<xref ref-type="fig" rid="F2">Figure 2</xref>). At the M stage, higher concentrations of tocopherols were detected in the flavedo of lemon (&#x223C;208 &#x03BC;g g<sup>&#x2013;1</sup> FW) than in grapefruit (&#x223C;134 &#x03BC;g g<sup>&#x2013;1</sup> FW), sweet orange (&#x223C;116 &#x03BC;g g<sup>&#x2013;1</sup> FW), and mandarin (&#x223C;95 &#x03BC;g g<sup>&#x2013;1</sup> FW) (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 3</xref>). In contrast to the other species, contents in sweet orange increased to a maximum at the breaker (Br) stage (&#x223C;160 &#x03BC;g g<sup>&#x2013;1</sup> FW) and then decreased toward M fruit (<xref ref-type="fig" rid="F2">Figure 2B</xref>). Contents of &#x03B1;-tocopherol reflected the differences among species described for total tocopherol. In IG fruit, &#x03B1;-tocopherol levels ranged from 22 to 98 &#x03BC;g g<sup>&#x2013;1</sup> FW and increased to levels between 80 and 199 &#x03BC;g g<sup>&#x2013;1</sup> FW at the M stage, with lemon fruit accumulating the highest content (<xref ref-type="fig" rid="F2">Figure 2C</xref> and <xref ref-type="supplementary-material" rid="DS1">Supplementary Table 3</xref>). &#x03B3;-Tocopherol ranged from 0.75 to 8.4 &#x03BC;g g<sup>&#x2013;1</sup> FW at the IG stage, with lemon and mandarin accumulating the lowest content (&#x003C;3 &#x03BC;g) (<xref ref-type="fig" rid="F2">Figure 2D</xref> and <xref ref-type="supplementary-material" rid="DS1">Supplementary Table 3</xref>). This tocopherol isoform increased during maturation in the flavedo of all species, reaching maximum values at the Br or M stages, between 10 &#x03BC;g g<sup>&#x2013;1</sup> in lemon and 42 &#x03BC;g g<sup>&#x2013;1</sup> in sweet orange (<xref ref-type="fig" rid="F2">Figure 2D</xref>). It should be noticed that in all the ripening stages, the flavedo of lemon and mandarin showed lower concentrations of &#x03B3;-tocopherol in comparison to sweet orange and grapefruit (<xref ref-type="fig" rid="F2">Figure 2D</xref> and <xref ref-type="supplementary-material" rid="DS1">Supplementary Table 3</xref>).</p>
<p>The pulp of sweet orange, mandarin, and grapefruit showed the highest levels of total tocopherol at the IG stage (&#x223C;13&#x2013;23 &#x03BC;g g<sup>&#x2013;1</sup> FW), which decreased at the MG stage (more than fourfold) (<xref ref-type="fig" rid="F3">Figure 3</xref>). In lemon, changes during ripening were minor and levels remained almost constant (&#x223C;11&#x2013;14 &#x03BC;g g<sup>&#x2013;1</sup> FW). In M fruit, the pulp of lemon accumulated the highest total contents, followed by grapefruit and lastly orange and mandarin (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 4</xref>). As in the flavedo, &#x03B1;-tocopherol contents reflected the main differences in total tocopherols among species and during maturation (<xref ref-type="fig" rid="F3">Figure 3C</xref> and <xref ref-type="supplementary-material" rid="DS1">Supplementary Table 4</xref>). Contents in the pulp ranged from 13 to 22 &#x03BC;g g<sup>&#x2013;1</sup> FW at IG stage, and 2 to 11 &#x03BC;g g<sup>&#x2013;1</sup> FW at M fruit. The levels of &#x03B3;-tocopherol in the pulp of the four species were below 1 &#x03BC;g g<sup>&#x2013;1</sup> FW at IG stage and decreased during maturation in the four species (<xref ref-type="fig" rid="F3">Figure 3D</xref>).</p></sec>
<sec id="S3.SS2">
<title>Expression Profile of Genes Involved in Tocopherol Synthesis in the Flavedo During Fruit Maturation of Four <italic>Citrus</italic> Species: Grapefruit (<italic>Citrus paradisi</italic>), Lemon (<italic>Citrus limon</italic>), Sweet Orange (<italic>Citrus. sinensis</italic>), and Mandarin (<italic>Citrus clementine</italic>)</title>
<p>The relative expression of genes related to tocopherol precursors production: <italic>VTE5</italic>, <italic>VTE6</italic>, <italic>DXS1</italic>, <italic>DXS2</italic>, <italic>GGPPS1</italic>, <italic>GGPPS6</italic>, <italic>GGDR</italic>, <italic>TAT1</italic>, and <italic>HPPD</italic> (<xref ref-type="fig" rid="F4">Figure 4</xref>), and to the tocopherol-core pathway: <italic>VTE2</italic>, <italic>VTE3a</italic>, <italic>VTE3b</italic>, <italic>VTE1</italic>, and <italic>VTE4</italic> (<xref ref-type="fig" rid="F5">Figure 5</xref>) were evaluated in the flavedo of the four selected <italic>Citrus</italic> species during fruit maturation. Changes in the expression of the genes involved in the synthesis of the precursor PPP, which includes genes involved in chlorophyll degradation (<xref ref-type="fig" rid="F1">Figures 1</xref>, <xref ref-type="fig" rid="F4">4A</xref>) and of the MEP pathway (<xref ref-type="fig" rid="F1">Figures 1</xref>, <xref ref-type="fig" rid="F4">4B</xref>) during fruit ripening, were in general gene- and specie-dependent, but tended to be down-regulated. Of the genes involved in the recycling of free phytol to form PPP (<xref ref-type="fig" rid="F4">Figure 4A</xref>), a significant down-regulation of <italic>VTE6</italic> during fruit ripening (two- to threefold decrease) was detected in fruits of the four species. <italic>VTE5</italic> expression also decreased in the four species, although with a transient induction at the MG stage in lemon and grapefruit. Regarding genes of the MEP pathway (<xref ref-type="fig" rid="F4">Figure 4B</xref>), a decrease in the expression of <italic>DXS2</italic> was detected during fruit ripening in the four species, and of <italic>GGDR</italic> in lemon, orange, and mandarin. In the flavedo of grapefruit, the expression decreased at Br stage but increased again at the M stage. No clear common trend among the four species was found in the expression of <italic>DXS1</italic> and the two <italic>GGPPS</italic> paralogous during fruit maturation, although <italic>DXS1</italic> and <italic>GGPPS6</italic> tended to decrease in most species (<xref ref-type="fig" rid="F4">Figure 4B</xref>). By contrast, the genes involved in the synthesis of the precursor HGA, <italic>TAT1</italic> and <italic>HPPD</italic>, were in general induced during maturation (<xref ref-type="fig" rid="F4">Figure 4C</xref>). The expression of <italic>TAT1</italic> was significantly up-regulated in the four species, showing levels 6- to 28-fold higher at Br and M stages than at IG. The relative expression of <italic>HPPD</italic> gradually increased in grapefruit and at the last stage of maturation in sweet orange and mandarin, but decreased in lemon (<xref ref-type="fig" rid="F4">Figure 4C</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>Relative expression of genes involved in the synthesis of precursor PPP (phytyl pyrophosphate), through the recycling of free phytol <bold>(A)</bold> and MEP pathway <bold>(B)</bold>, and of precursor HGA (homogentisate) through the SK pathway <bold>(C)</bold>, in the flavedo during fruit maturation of grapefruit (<italic>C. paradisi</italic>), lemon (<italic>C. limon</italic>), sweet orange (<italic>C. sinensis</italic>), and mandarin (<italic>C. clementine</italic>). The genes analyzed were <italic>VTE5</italic> (phytol kinase), <italic>VTE6</italic> (phytyl-P kinase), <italic>DXS1</italic> and <italic>DXS2</italic> (1-deoxy-<sc>D</sc>-xylulose-5-phosphate synthase 1 and 2), <italic>GGPPS1</italic> and <italic>GGPPS6</italic> (geranylgeranyl pyrophosphate synthase 1 and 6), <italic>GGDR</italic> (geranylgeranyl diphosphate reductase), <italic>TAT1</italic> (tyrosine aminotransferase), and <italic>HPPD</italic> (4-hydroxyphenylpyruvate dioxygenase). Maturation stages correspond to immature green (IG), mature green (MG), breaker (Br), and mature (M). The data are mean &#x00B1; SE of at least three replicates (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 11</xref>). Different letters indicate significant mean differences among maturation stages for each fruit specie (Tukey&#x2019;s test, <italic>p</italic> &#x2264; 0.05).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-12-743993-g004.tif"/>
</fig>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption><p>Relative expression of genes of the tocopherol-core pathway in the flavedo during fruit maturation of grapefruit (<italic>C. paradisi</italic>), lemon (<italic>C. limon</italic>), sweet orange (<italic>C. sinensis</italic>), and mandarin (<italic>C. clementine</italic>). The genes analyzed were <italic>VTE2</italic> (HPT, homogentisate phytyl transferase), <italic>VTE3a</italic> and <italic>VTE3b</italic> (MPBQ-MT, 2-methyl-6-phytyl-1,4-benzoquinol methyltransferase a and b), <italic>VTE1</italic> (TC, tocopherol cyclase), and <italic>VTE4</italic> (&#x03B3;-TMT, &#x03B3;-tocopherol methyltransferase). Maturation stages correspond to immature green (IG), mature green (MG), breaker (Br), and mature (M). The data are mean &#x00B1; SE of at least three replicates (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 11</xref>). Different letters indicate significant mean differences among maturation stages for each fruit specie (Tukey&#x2019;s test, <italic>p</italic> &#x2264; 0.05).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-12-743993-g005.tif"/>
</fig>
<p>Expression of the tocopherol-core pathway genes during maturation varied among species, but most of the genes were induced or maintained during ripening (<xref ref-type="fig" rid="F5">Figure 5</xref>). The gene <italic>VTE2</italic>, which controls the condensation of PPP with HGA, was induced almost two-times in lemon at the Br stage, while it displayed a transient but significant down-regulation between the MG and Br stage in the other three genotypes. The two <italic>VTE3</italic> isoforms were significantly down-regulated in lemon and orange, although a transient increase at the MG stage was detected in lemon. In grapefruit <italic>VTE3a</italic> increased after the IG stage, while it decreased in mandarin&#x2019;s flavedo after the same stage. On the other hand, expression of <italic>VTE3b</italic> decreased in grapefruit, although with a peak at the MG stage, whereas it was induced at the M stage in mandarin fruit. The gene <italic>VTE1</italic> displayed an induction in grapefruit and mandarin (twofold increase), while its expression was maintained with transient variations at the MG and Br stage in sweet orange. In lemon, <italic>VTE1</italic> showed a similar pattern of expression to the <italic>VTE3</italic> isoforms, with a sharp and induction at the MG stage that decreased at later stages. Finally, <italic>VTE4</italic> displayed the most consistent expression pattern among the four species, with a significant up-regulation (two and three-times) during maturation.</p>
</sec>
<sec id="S3.SS3">
<title>Expression Profile of Genes Involved in Tocopherol Synthesis in the Pulp During Fruit Maturation of Four <italic>Citrus</italic> Species: Grapefruit (<italic>Citrus paradisi</italic>), Lemon (<italic>Citrus limon</italic>), Sweet Orange (<italic>Citrus sinensis</italic>), and Mandarin (<italic>Citrus clementine</italic>)</title>
<p>The relative expression of the genes related to the production of tocopherol precursors: <italic>VTE5</italic>, <italic>VTE6</italic>, <italic>DXS1</italic>, <italic>DXS2</italic>, <italic>GGPPS1</italic>, <italic>GGPPS6</italic>, <italic>GGDR</italic>, <italic>TAT1</italic>, and <italic>HPPD</italic> (<xref ref-type="fig" rid="F6">Figure 6</xref>), and to the tocopherol-core pathway: <italic>VTE2</italic>, <italic>VTE3a</italic>, <italic>VTE3b</italic>, <italic>VTE1</italic>, and <italic>VTE4</italic> (<xref ref-type="fig" rid="F7">Figure 7</xref>), were analyzed in the pulp of fruit from the selected genotypes. In general, temporal changes in the expression of genes involved in PPP synthesis in the pulp were dependent on the gene and specie, but similarities for certain genes were found. Concerning genes of chlorophyll degradation, <italic>VTE5</italic> transcripts were significantly up-regulated in lemon, orange, and mandarin during ripening and only transiently at the Br stage in grapefruit, while the expression of <italic>VTE6</italic> was significantly down-regulated in the pulp of the four species (<xref ref-type="fig" rid="F6">Figure 6A</xref>). Of the MEP pathway genes, expression of <italic>DXS1</italic> was induced in sweet orange and mandarin (more than twofold) but remained relatively unaltered in grapefruit and lemon (only with transient decreases mid-ripening) (<xref ref-type="fig" rid="F6">Figure 6B</xref>). Interestingly, expression of <italic>DXS2</italic> was induced in lemon but down-regulated in the pulp of the other <italic>Citrus</italic> species. Furthermore, while <italic>GGPPS1</italic> was significantly induced in the four species, the isoform <italic>GGPPS6</italic> was only induced in orange and down-regulated in the other species. The expression of <italic>GGDR</italic> decreased during maturation in the four species, but the reduction was more marked in sweet orange and mandarin than in the other species. On the other hand, the expression of both <italic>TAT1</italic> and <italic>HPPD</italic> genes, involved in HGA synthesis, was up-regulated during ripening in the pulp of the four citrus fruits.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption><p>Relative expression of genes involved in the synthesis of precursor PPP (phytyl pyrophosphate), through the recycling of free phytol <bold>(A)</bold> and MEP pathway <bold>(B)</bold>, and of precursor HGA (homogentisate) through the SK pathway <bold>(C)</bold>, in the pulp during fruit maturation of grapefruit (<italic>C. paradisi</italic>), lemon (<italic>C. limon</italic>), sweet orange (<italic>C. sinensis</italic>), and mandarin (<italic>C. clementine</italic>). The genes analyzed were <italic>VTE5</italic> (phytol kinase), <italic>VTE6</italic> (phytyl-P kinase), <italic>DXS1</italic> and <italic>DXS2</italic> (1-deoxy-<sc>D</sc>-xylulose-5-phosphate synthase 1 and 2), <italic>GGPPS1</italic> and <italic>GGPPS6</italic> (geranylgeranyl pyrophosphate synthase 1 and 6), <italic>GGDR</italic> (geranylgeranyl diphosphate reductase), <italic>TAT1</italic> (tyrosine aminotransferase), and <italic>HPPD</italic> (4-hydroxyphenylpyruvate dioxygenase). Maturation stages correspond to immature green (IG), mature green (MG), breaker (Br), and mature (M). The data are mean &#x00B1; SE of at least three replicates (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 12</xref>). Different letters indicate significant mean differences among maturation stages for each fruit specie (Tukey&#x2019;s test, <italic>p</italic> &#x2264; 0.05).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-12-743993-g006.tif"/>
</fig>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption><p>Relative expression of genes of the tocopherol-core pathway in the pulp during fruit maturation of grapefruit (<italic>C. paradisi</italic>), lemon (<italic>C. limon</italic>), sweet orange (<italic>C. sinensis</italic>), and mandarin (<italic>C. clementine</italic>). The genes analyzed were <italic>VTE2</italic> (HPT, homogentisate phytyl transferase), <italic>VTE3a</italic> and <italic>VTE3b</italic> (MPBQ-MT, 2-methyl-6-phytyl-1,4-benzoquinol methyltransferase a and b), <italic>VTE1</italic> (TC, tocopherol cyclase), and <italic>VTE4</italic> (&#x03B3;-TMT, &#x03B3;-tocopherol methyltransferase). Maturation stages correspond to immature green (IG), mature green (MG), breaker (Br), and mature (M). The data are mean &#x00B1; SE of at least three replicates (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 12</xref>). Different letters indicate significant mean differences among maturation stages for each fruit specie (Tukey&#x2019;s test, <italic>p</italic> &#x2264; 0.05).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-12-743993-g007.tif"/>
</fig><p>In relation with the genes of the tocopherol-core pathway, no common expression trend among genotypes was detected (<xref ref-type="fig" rid="F7">Figure 7</xref>). The gene <italic>VTE2</italic> was significantly down-regulated during fruit maturation in grapefruit, sweet orange, and mandarin, whereas no difference between the M and IG stages was detected in lemon. Moreover, the gene <italic>VTE4</italic> was significantly up-regulated during maturation in lemon, orange, and mandarin, but only transitionally at Br stage in grapefruit. In relation to the other genes, expression of <italic>VTE3a</italic> was induced in lemon while it remained almost unaltered in grapefruit and mandarin (with transient significant changes at the Br stage). A different pattern for the <italic>VTE3b</italic> isoform was detected in grapefruit, lemon, and mandarin, with its expression being down-regulated in grapefruit and relative constant in lemon and mandarin. In orange, both isoforms displayed the same expression pattern, with a significant increase at the MG stage that later decreased again. Expression of <italic>VTE1</italic> showed minor alterations in the pulp of grapefruit and sweet orange, but was significantly induced in lemon and mandarin.</p>
</sec>
<sec id="S3.SS4">
<title>Correlation and Network Analysis of Tocopherol Contents and Relative Expression of the Genes Involved in Tocopherol Synthesis in the Flavedo and Pulp During Fruit Maturation of Four <italic>Citrus</italic> Species: Grapefruit (<italic>Citrus paradisi</italic>), Lemon (<italic>Citrus limon</italic>), Sweet Orange (<italic>Citrus sinensis</italic>), and Mandarin (<italic>Citrus clementine</italic>)</title>
<p>To better understand the relationship between gene expression and the accumulation of tocopherols, a correlation matrix (<xref ref-type="fig" rid="F8">Figures 8A,C</xref>) and network analysis (<xref ref-type="fig" rid="F8">Figures 8B,D</xref>) were built independently for the flavedo and pulp, using data of the four species at the four maturation stages. The network analysis, in which only significant correlations were taken into account, revealed that tocopherols (total, &#x03B1;- and &#x03B3;-forms) and all genes analyzed were present in both the flavedo and pulp networks, arranged in an interconnected group in each tissue (<xref ref-type="fig" rid="F8">Figure 8</xref>). However, the number of interconnections in the networks was different between tissues, with a media of 3.76 edges in the flavedo and 8.82 in the pulp, and the number of negative links between metabolite nodes and the expression of genes was higher in the pulp than in the flavedo (<xref ref-type="fig" rid="F8">Figures 8B,D</xref>).</p>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption><p>Correlation matrices <bold>(A,C)</bold> and networks <bold>(B,D)</bold> of tocopherol contents and expression of genes involved in tocopherol synthesis in the flavedo <bold>(A,B)</bold> and pulp <bold>(C,D)</bold> during fruit maturation of grapefruit (<italic>C. paradisi</italic>), lemon (<italic>C. limon</italic>), sweet orange (<italic>C. sinensis</italic>), and mandarin (<italic>C. clementine</italic>). Positive and negative correlations in the matrices are shown in different shades of red and blue, respectively, with the size of the circle and color intensity indicating the magnitude of Pearson&#x2019;s correlation coefficient. In the correlation networks, square nodes represent tocopherol contents (Ttoc, total tocopherols; Atoc, &#x03B1;-tocopherol; Gtoc, &#x03B3;-tocopherol) and circle nodes represent genes (green, genes involved in the recycling of phytol; orange, genes of the MEP pathway; red, genes of the SK pathway; and blue, genes of the tocopherol-core pathway). Lines joining the nodes represent correlations (edges); positive correlations are shown in red, while negative correlations are in blue, and the color intensity represents the strength of the correlation (absolute value of the Pearson&#x2019;s correlation coefficient). Only significant correlations (<italic>p</italic>-value &#x2264; 0.05) were taken into account for constructing the correlation networks. Values for the correlation coefficients and significances are detailed in <xref ref-type="supplementary-material" rid="DS1">Supplementary Tables 7</xref>, <xref ref-type="supplementary-material" rid="DS1">8</xref>, <xref ref-type="supplementary-material" rid="DS1">13</xref>, <xref ref-type="supplementary-material" rid="DS1">14</xref>.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-12-743993-g008.tif"/>
</fig>
<p>In the flavedo, <italic>VTE6</italic> and <italic>TAT1</italic> were the most interconnected genes (6&#x2013;7 edges), but <italic>GGPPS6</italic>, <italic>VTE3a</italic>, <italic>VTE3b</italic>, and <italic>VTE4</italic> also had links above the median (<xref ref-type="fig" rid="F8">Figure 8B</xref>). Not surprisingly, &#x03B1;-tocopherol and &#x03B3;-tocopherol showed a strong and positive relationship with total tocopherols, but the correlation between &#x03B1;- and &#x03B3;-tocopherol was not significant (<xref ref-type="fig" rid="F8">Figures 8A,B</xref>). Moreover, tocopherols were positively correlated with the genes <italic>TAT1</italic>, of the SK pathway, and <italic>VTE4</italic>, of the tocopherol core pathway, suggesting that both <italic>TAT1</italic> and <italic>VTE4</italic> are key genes modulating tocopherol accumulation in the flavedo (<xref ref-type="fig" rid="F8">Figures 8A,B</xref>). On the other hand, total tocopherols and &#x03B1;-tocopherol were negatively correlated with the gene <italic>GGPPS6</italic> of the MEP pathway, while &#x03B3;-tocopherol displayed a negative correlation with the genes <italic>VTE6</italic> and <italic>DXS2</italic> (<xref ref-type="fig" rid="F8">Figures 8A,B</xref>). Interestingly, the gene <italic>VTE6</italic> seemed highly connected to genes of the MEP pathway (<italic>DXS2</italic>, <italic>GGDR</italic>, and <italic>GGPPS6</italic>) and with both isoforms of <italic>VTE3</italic> (<xref ref-type="fig" rid="F8">Figure 8B</xref>), suggesting that they are co-regulated in the flavedo during ripening.</p>
<p>In the pulp, 10 genes: <italic>DXS1</italic>, <italic>GGPPS1</italic>, <italic>GGPPS6</italic>, <italic>VTE5</italic>, <italic>TAT1</italic>, <italic>HPPD</italic>, <italic>VTE2</italic>, <italic>VTE3b</italic>, <italic>VTE1</italic>, and <italic>VTE4</italic>, showed a number of links above the median, being <italic>GGPPS1</italic>, <italic>HPPD</italic>, <italic>VTE1</italic>, <italic>DXS1</italic>, and <italic>VTE4</italic> the most interconnected genes (11&#x2013;12 edges) (<xref ref-type="fig" rid="F8">Figures 8C,D</xref>). A strong positive correlation was detected between &#x03B1;- and &#x03B3;-tocopherol in the pulp (<xref ref-type="fig" rid="F8">Figures 8C,D</xref>). The network analysis in the pulp also revealed a positive correlation of total and &#x03B1;-tocopherol with the genes <italic>VTE6</italic>, <italic>DXS2</italic>, and <italic>GGDR</italic> (<xref ref-type="fig" rid="F8">Figures 8C,D</xref>). Tocopherols were negatively correlated with <italic>GGPPS1</italic> and <italic>HPPD</italic> and, in the case of total tocopherols and &#x03B1;-tocopherol, also with <italic>DXS1</italic>, <italic>TAT1</italic>, <italic>VTE1</italic>, and <italic>VTE4</italic> (<xref ref-type="fig" rid="F8">Figures 8C,D</xref>). Similar to what was observed in the flavedo, a connection between <italic>VTE6</italic> and the genes <italic>DXS2</italic> and <italic>GGDR</italic> of the MEP pathway was detected. Furthermore, other genes were positively co-regulated in the pulp, including genes of the MEP pathway (<italic>GGPPS6</italic>, <italic>GGPPS1</italic>, and <italic>DXS1</italic>), involved in phytol recycling (<italic>VTE5</italic>), of the SK pathway (<italic>HPPD</italic> and <italic>TAT1</italic>) and of the tocopherol-core pathway (<italic>VTE2</italic>, <italic>VTE3b</italic>, <italic>VTE1</italic>, and <italic>VTE4</italic>).</p>
</sec>
</sec>
<sec id="S4" sec-type="discussion">
<title>Discussion</title>
<p>Taking advantage of the genetic and phenotypical diversity of the genus <italic>Citrus</italic>, the aim of this work was to investigate the changes in tocopherol contents and their regulation during maturation of fruit of four <italic>Citrus</italic> species belonging to the main horticultural groups: grapefruit, lemon, sweet orange, and mandarin. Tocopherols were identified in all the selected <italic>Citrus</italic> species throughout maturation, with contents varying between tissues, maturation stages, and genotypes (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F3">3</xref> and <xref ref-type="supplementary-material" rid="DS1">Supplementary Tables 3</xref>, <xref ref-type="supplementary-material" rid="DS1">4</xref>). The tocopherol profile was in agreement with previous reports, with &#x03B1;- and &#x03B3;-tocopherol being the main forms detected in <italic>Citrus</italic> fruit (<xref ref-type="bibr" rid="B10">Assefa et al., 2017</xref>; <xref ref-type="bibr" rid="B49">Rey et al., 2021a</xref>, <xref ref-type="bibr" rid="B48">b</xref>). However, predominance of one form or another seems to be dependent on the <italic>Citrus</italic> specie, as similar or higher &#x03B3;-tocopherol contents have been detected in less common Korean <italic>Citrus</italic> genotypes (<xref ref-type="bibr" rid="B10">Assefa et al., 2017</xref>). In fruit of other species, the prevalence of &#x03B1;- or &#x03B3;-tocopherol is also specie-specific and, while &#x03B1;-tocopherol is the main form in tomato, pepper, mango, grape, olive, and avocado (<xref ref-type="bibr" rid="B33">Koch et al., 2002</xref>; <xref ref-type="bibr" rid="B31">Horvath et al., 2006b</xref>; <xref ref-type="bibr" rid="B47">Quadrana et al., 2013</xref>; <xref ref-type="bibr" rid="B56">Singh et al., 2017</xref>; <xref ref-type="bibr" rid="B25">Georgiadou et al., 2019</xref>; <xref ref-type="bibr" rid="B64">Vincent et al., 2020</xref>), &#x03B3;-tocopherol accumulates at higher concentrations in zucchini and raspberry fruit (<xref ref-type="bibr" rid="B15">Carvalho et al., 2013</xref>; <xref ref-type="bibr" rid="B51">Rodov et al., 2020</xref>). In our experimental conditions, &#x03B2;-tocopherol was not detected, and &#x03B4;-tocopherol was only identified in some samples but at levels below the limit of quantification, indicating that the &#x03B4;-/&#x03B2;-tocopherol branch may not have a significant contribution to the tocopherol pool in citrus fruit.</p>
<p>Many physiological and metabolic processes are independently regulated in the flavedo and pulp of <italic>Citrus</italic> fruit (<xref ref-type="bibr" rid="B60">Tadeo et al., 2020</xref>), and this seems to be the case for tocopherol metabolism as contents were higher in the flavedo than the pulp (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F3">3</xref>). Similarly, higher concentrations of other bioactive compounds have been reported in the flavedo than in the pulp of citrus (<xref ref-type="bibr" rid="B8">Alqu&#x00E9;zar et al., 2008</xref>, <xref ref-type="bibr" rid="B7">2013</xref>; <xref ref-type="bibr" rid="B6">Al&#x00F3;s et al., 2014</xref>; <xref ref-type="bibr" rid="B10">Assefa et al., 2017</xref>). A possible explanation for this is that the direct exposure of the flavedo to environmental stresses could lead to a higher demand for antioxidants to cope with these adverse conditions. In relation to this, light could play a relevant role either as a stress factor or by its direct impact in the regulation of tocopherol biosynthesis. Tocopherols are involved in the photo-protection of plants (<xref ref-type="bibr" rid="B57">Spicher et al., 2017</xref>; <xref ref-type="bibr" rid="B38">Ma et al., 2020b</xref>), and increases in contents have been reported in response to high light stress (<xref ref-type="bibr" rid="B19">Collakova and DellaPenna, 2003b</xref>; <xref ref-type="bibr" rid="B28">Havaux et al., 2005</xref>). Furthermore, a positive role of light in the transcriptional regulation of certain tocopherol biosynthetic genes has been proposed in grapefruit (<xref ref-type="bibr" rid="B48">Rey et al., 2021b</xref>) and tomato (<xref ref-type="bibr" rid="B27">Gramegna et al., 2019</xref>).</p>
<p>The differences detected between fruit tissues were not only quantitative but also in the pattern of accumulation during maturation (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F3">3</xref>), suggesting that different mechanisms may operate in the regulation of tocopherol synthesis in the flavedo and pulp of <italic>Citrus</italic> fruit. The differential accumulation of tocopherols between citrus fruit tissues may also be related to their chlorophyll contents, as an alternative source of PPP is through the recycling of free phytol formed during the degradation of chlorophylls (<xref ref-type="fig" rid="F1">Figure 1</xref>; <xref ref-type="bibr" rid="B63">Valentin et al., 2006</xref>; <xref ref-type="bibr" rid="B26">Georgiadou et al., 2015</xref>; <xref ref-type="bibr" rid="B65">vom Dorp et al., 2015</xref>; <xref ref-type="bibr" rid="B2">Almeida et al., 2016</xref>). While chlorophyll content in the pulp of <italic>Citrus</italic> fruit is negligible or only detected in IG fruit, concentrations in the flavedo are high throughout development and decrease notably with the transition of chloroplasts to chromoplasts (<xref ref-type="bibr" rid="B8">Alqu&#x00E9;zar et al., 2008</xref>, <xref ref-type="bibr" rid="B7">2013</xref>; <xref ref-type="bibr" rid="B36">Lado et al., 2015</xref>, <xref ref-type="bibr" rid="B35">2019</xref>). Therefore, the higher concentration of chlorophylls in the flavedo at immature stages and their degradation as ripening progresses could lead to a higher availability of free phytol to form PPP, higher influx into the tocopherol-core pathway and an enhancement of tocopherol contents. Accumulation of tocopherols concomitantly with chlorophylls breakdown during color change has been also described in fruit of other species like pepper (<xref ref-type="bibr" rid="B44">Osuna-Garc&#x00ED;a et al., 1998</xref>; <xref ref-type="bibr" rid="B33">Koch et al., 2002</xref>) and olive (<xref ref-type="bibr" rid="B24">Georgiadou et al., 2016</xref>).</p>
<p>The transcriptional analysis of tocopherol genes revealed that differences in tocopherol concentrations between tissues were associated with a generalized higher expression in the flavedo than in the pulp (<xref ref-type="fig" rid="F4">Figures 4&#x2013;7</xref>), which reinforces the hypothesis of the differential regulation of tocopherols accumulation between tissues. Moreover, transcriptional patterns during fruit maturation and correlation analysis pointed specific candidate genes that may regulate tocopherol levels in each tissue (<xref ref-type="fig" rid="F4">Figures 4&#x2013;8</xref>). In the flavedo, <italic>TAT1</italic> and <italic>VTE4</italic> showed a significant positive correlation to total, &#x03B1;- and &#x03B3;-tocopherol contents (<xref ref-type="fig" rid="F8">Figures 8A,B</xref>) suggesting the importance of these genes in regulating tocopherol accumulation in this tissue. <italic>TAT1</italic> plays a major role in tocopherol synthesis by regulating HGA availability (<xref ref-type="bibr" rid="B50">Riewe et al., 2012</xref>), and an induction of this gene during senescence has been previously reported in Arabidopsis leaves, and associated with an increase in &#x03B1;- and &#x03B3;-tocopherol content (<xref ref-type="bibr" rid="B29">Holl&#x00E4;nder-Czytko et al., 2005</xref>). On the other hand, the gene <italic>VTE4</italic>, which encodes for &#x03B3;-TMT, plays a role in shaping tocopherol composition rather than increasing tocopherol contents (<xref ref-type="bibr" rid="B11">Bergm&#x00FC;ller et al., 2003</xref>). Modifications in the expression of <italic>VTE4</italic> have been successful in increasing &#x03B1;-tocopherol but in detriment of &#x03B3;-tocopherol contents, and thus not altering total contents (<xref ref-type="bibr" rid="B11">Bergm&#x00FC;ller et al., 2003</xref>; <xref ref-type="bibr" rid="B18">Collakova and DellaPenna, 2003a</xref>; <xref ref-type="bibr" rid="B39">Maeda et al., 2006</xref>). Therefore, in the flavedo of citrus the combined up-regulation of <italic>TAT1</italic> and <italic>VTE4</italic> during maturation could indicate a higher influx into the tocopherol core-pathway, due to a higher availability of HGA, which afterward is mostly converted into &#x03B1;-tocopherol by the increase in downstream <italic>VTE4</italic>. Still, it is important to keep in mind that many substrates and enzymes involved in tocopherol synthesis also participate in other metabolic pathways, such as HGA, and therefore the possible channeling to other pathways should be considered. Additionally, other genes, such as <italic>HPPD</italic> or <italic>GGPPS1</italic>, were also induced during ripening in specific citrus species and may also contribute to the increase of tocopherols, although they were not significantly linked to tocopherol contents in the network analysis (<xref ref-type="fig" rid="F8">Figure 8B</xref>).</p>
<p>The expression of most genes involved in the regulation of PPP production tended to decrease in the flavedo during maturation with no apparent effect on tocopherol contents (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F4">4A,B</xref>). Mutant plants of Arabidopsis in some of these genes (<italic>vte6</italic>, <italic>dxs</italic>, and <italic>ggpps11</italic>) have resulted in a reduction in tocopherol levels (<xref ref-type="bibr" rid="B21">Est&#x00E9;vez et al., 2001</xref>; <xref ref-type="bibr" rid="B65">vom Dorp et al., 2015</xref>; <xref ref-type="bibr" rid="B54">Ruiz-Sola et al., 2016</xref>). Nonetheless, the expression of <italic>GGPPS6</italic>, the citrus orthologous gene of Arabidopsis <italic>GGPPS11</italic>, was significantly and negatively correlated with total and &#x03B1;-tocopherol levels, whereas <italic>VTE6</italic> and <italic>DXS2</italic> were negatively correlated with &#x03B3;-tocopherol (<xref ref-type="fig" rid="F8">Figure 8B</xref>). A down-regulation of <italic>DXS</italic> has been previously reported in the flavedo of grapefruit, orange, and mandarin linked to the onset of chlorophylls degradation at color break, rather than to the accumulation of other MEP-derived isoprenoids (<xref ref-type="bibr" rid="B5">Al&#x00F3;s et al., 2006</xref>; <xref ref-type="bibr" rid="B8">Alqu&#x00E9;zar et al., 2008</xref>, <xref ref-type="bibr" rid="B7">2013</xref>; <xref ref-type="bibr" rid="B36">Lado et al., 2015</xref>, <xref ref-type="bibr" rid="B35">2019</xref>). Collectively, these results suggest that the supply of PPP by the recycling of free phytol or by <italic>de novo</italic> synthesis through the MEP pathway may not constrain tocopherol synthesis in the flavedo of <italic>Citrus</italic> during maturation.</p>
<p>In the pulp, most of the genes exhibited a similar expression tendency to that of the flavedo (<xref ref-type="fig" rid="F4">Figures 4&#x2013;7</xref>), although tocopherol concentrations were lower and followed contrasting temporal patterns (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F3">3</xref>). A similar pattern of expression among genotypes was detected in the pulp for the genes <italic>TAT1</italic>, <italic>HPPD</italic>, <italic>VTE6</italic>, <italic>GGPPS1</italic>, and <italic>GGDR</italic> (<xref ref-type="fig" rid="F6">Figure 6</xref>), whereas changes in the expression of the other genes followed a distinct profile depending on the specie (<xref ref-type="fig" rid="F6">Figures 6</xref>, <xref ref-type="fig" rid="F7">7</xref>). Interestingly, <italic>TAT1</italic> was induced during maturation in the four species, similarly to the changes detected in the flavedo but opposite to the pattern of tocopherol accumulation in the pulp, and <italic>HPPD</italic> was induced in the pulp and in the flavedo of grapefruit, orange, and mandarin (<xref ref-type="fig" rid="F4">Figures 4C</xref>, <xref ref-type="fig" rid="F6">6C</xref>). An induction of genes of the SK pathway (<italic>TAT1</italic> and <italic>HPPD</italic>) has also been observed with maturation in tomato and olive fruit but, as in the citrus pulp, did not mirror the changes in tocopherol contents (<xref ref-type="bibr" rid="B47">Quadrana et al., 2013</xref>; <xref ref-type="bibr" rid="B26">Georgiadou et al., 2015</xref>). This suggests that the up-regulation of these genes could be developmentally modulated and not necessarily associated to tocopherol contents in the pulp or in fleshy fruits. Since both <italic>TAT1</italic> and <italic>HPPD</italic> are involved in the synthesis of the precursor HGA, which is not specific of tocopherol synthesis, it is likely that their induction is related to the synthesis of other tocochromanols which also use HGA as a precursor (<xref ref-type="bibr" rid="B59">Szyma&#x0144;ska and Kruk, 2010</xref>; <xref ref-type="bibr" rid="B34">Kruk et al., 2014</xref>; <xref ref-type="bibr" rid="B12">Burgos et al., 2021</xref>). In relation to the other genes involved in tocopherol synthesis, the decrease in tocopherol contents observed in the pulp of grapefruit, orange, and mandarin was synchronized with the down-regulation of the genes <italic>VTE6</italic>, <italic>DXS2</italic>, <italic>GGDR</italic>, and <italic>VTE2</italic> (<xref ref-type="fig" rid="F6">Figures 6</xref>, <xref ref-type="fig" rid="F7">7</xref>). These results suggest that transcriptional regulation of these genes play a role determining tocopherol content in the pulp, which was supported by the correlation network results (<xref ref-type="fig" rid="F8">Figures 8C,D</xref>). These genes, in particular those involved in the supply of PPP, have been previously proposed as limiting steps in tocopherol accumulation in the flesh of tomato (<xref ref-type="bibr" rid="B47">Quadrana et al., 2013</xref>; <xref ref-type="bibr" rid="B1">Almeida et al., 2015</xref>). In the pulp of lemon, expression of these genes varied from the other species but still reflected the minor changes detected in tocopherol accumulation during ripening in this specie. In the pulp, genes <italic>TAT1</italic>, <italic>HPPD</italic>, <italic>DXS1</italic>, <italic>GGPPS1</italic>, <italic>VTE1</italic>, and <italic>VTE4</italic> showed a negative correlation with total contents or a specific tocopherol form (<xref ref-type="fig" rid="F8">Figures 8C,D</xref>). Then, in this tissue, the down-regulation of genes involved in regulating PPP availability (<italic>VTE6</italic>, <italic>DXS2</italic>, and <italic>GGDR</italic>) may constrain tocopherol synthesis, and the up-regulation of other genes of the SK pathway (<italic>TAT1</italic> and <italic>HPPD</italic>) and tocopherol-core pathway (<italic>VTE1</italic> and <italic>VTE4</italic>) is not enough to compensate this limitation.</p>
<p>The network analyses in the flavedo and pulp also revealed genes that are co-regulated in both tissues during fruit maturation but in the pulp a higher number of genes were co-regulated compared to flavedo (<xref ref-type="fig" rid="F8">Figures 8B,D</xref>). The gene <italic>VTE6</italic> was positively linked to <italic>DXS2</italic> and <italic>GGDR</italic>, all involved in the supply of PPP in both tissues. Other genes that seemed to be co-expressed in both tissues were those of the SK pathway with the genes involved in the last steps of the tocopherol-core pathway (<xref ref-type="fig" rid="F8">Figure 8</xref>).</p>
<p>Finally, the differences in the accumulation of tocopherols detected among genotypes in each tissue (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F3">3</xref>) were not clearly related to the expression of any gene (<xref ref-type="fig" rid="F4">Figures 4&#x2013;7</xref>; <xref ref-type="supplementary-material" rid="DS1">Supplementary Tables 5, 6</xref>), although some trends were observed in the flavedo. Focusing on differences in gene expression at early maturation stages, when differences among genotypes were already evident (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 3</xref>), a higher expression of <italic>GGDR</italic> and <italic>VTE3b</italic> was detected in the flavedo of lemon and orange than in the other genotypes (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 5</xref>), which could explain the higher contents in these two species. Higher expression of these genes has been previously reported in <italic>Citrus</italic> genotypes accumulating higher tocopherol concentrations (<xref ref-type="bibr" rid="B49">Rey et al., 2021a</xref>) and also in other fruit species as tomato (<xref ref-type="bibr" rid="B47">Quadrana et al., 2013</xref>; <xref ref-type="bibr" rid="B27">Gramegna et al., 2019</xref>).</p>
</sec>
<sec id="S5" sec-type="conclusion">
<title>Conclusion</title>
<p>This study addresses for the first time a comparative analysis of tocopherols accumulation and transcriptional regulation of their biosynthetic genes during fruit maturation of four <italic>Citrus</italic> species. Differences in tocopherol contents were detected between the flavedo and pulp, and also during maturation and genotypes. Concentration of tocopherols in the flavedo were between 2 and 50 times higher than in the pulp, and this was associated with higher expression levels in the flavedo of most genes involved in the precursors PPP and HGA synthesis, and the tocopherol core-pathway. Moreover, tocopherols increased in the flavedo with maturation while they tended to decrease in the pulp, and correlation and network analysis allow to suggest candidate genes regulating tocopherol accumulation in each tissue. In the flavedo, the increase in tocopherol contents mirrored a marked up-regulation of <italic>TAT1</italic> and <italic>VTE4</italic>, while contents in the pulp may be limited by the expression of <italic>VTE6</italic>, <italic>DXS2</italic>, and <italic>GGDR</italic>, regulating PPP availability. Furthermore, the genes <italic>TAT1</italic> and <italic>VTE4</italic>, <italic>HPPD</italic> and <italic>VTE1</italic>, and <italic>VTE6</italic> with <italic>DXS2</italic> and <italic>GGDR</italic>, were co-regulated and shared a similar pattern during maturation in both tissues, suggesting they are developmentally modulated. Finally, the differences among genotypes were not clearly correlated with the expression of specific genes, indicating the involvement of other regulatory mechanisms modulating differences among species.</p>
</sec>
<sec id="S6" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="DS1">Supplementary Material</xref>, further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="S7">
<title>Author Contributions</title>
<p>MR and LZ: conceptualization, supervision, and funding acquisition. FR, MR, and LZ: methodology and writing &#x2013; review. FR: experimental work, formal analysis, data curation, and writing &#x2013; original draft preparation. All authors have read and agreed to the published version of the manuscript.</p>
</sec>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="pudiscl1">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<sec id="S8" sec-type="funding-information">
<title>Funding</title>
<p>This work was funded by the research grant RTI2018-095131-B-I00 of the Ministry of Science and Innovation/Agencia Espa&#x00F1;ola de Investigaci&#x00F3;n/FEDER (Spanish Government) and PROMETEO/2020/027 (Generalitat Valenciana). FR was the recipient of a Ph.D. scholarship (POS_EXT_2016_1_133720) from ANII (Uruguay). The authors acknowledge support of the publication fee by the CSIC Open Access Publication Support Initiative through its Unit of Information Resources for Research (URICI).</p>
</sec>
<ack>
<p>The authors acknowledge the Citrus Germplasm Bank of Instituto Valenciano de Investigaciones Agrarias (IVIA, Generalitat Valenciana) for the provision of fruit. The excellent technical assistance of M<sup>a</sup> C. Gurrea and I. Carbonell is gratefully acknowledged.</p>
</ack>
<sec id="S10" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fpls.2021.743993/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fpls.2021.743993/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Data_Sheet_1.xlsx" id="DS1" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet" xmlns:xlink="http://www.w3.org/1999/xlink"/>
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