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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2017.01625</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Acetolactate Synthase-Inhibiting Gametocide Amidosulfuron Causes Chloroplast Destruction, Tissue Autophagy, and Elevation of Ethylene Release in Rapeseed</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Liu</surname> <given-names>Xi-Qiong</given-names></name>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Yu</surname> <given-names>Cheng-Yu</given-names></name>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/213190/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Dong</surname> <given-names>Jun-Gang</given-names></name>
</contrib>
<contrib contrib-type="author">
<name><surname>Hu</surname> <given-names>Sheng-Wu</given-names></name>
<uri xlink:href="http://loop.frontiersin.org/people/354871/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Xu</surname> <given-names>Ai-Xia</given-names></name>
</contrib>
</contrib-group>
<aff><institution>Department of Plant Science and Technology, College of Agronomy, Northwest A&#x00026;F University</institution> <country>Yangling, China</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Yolanda Gogorcena, Estaci&#x000F3;n Experimental de Aula Dei (CSIC), Spain</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Hong An, University of Missouri, United States; Pilar Soengas, Misi&#x000F3;n Biologica de Galicia (CSIC), Spain</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Cheng-Yu Yu <email>yu1009&#x00040;nwafu.edu.cn</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Crop Science and Horticulture, a section of the journal Frontiers in Plant Science</p></fn></author-notes>
<pub-date pub-type="epub">
<day>21</day>
<month>09</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>8</volume>
<elocation-id>1625</elocation-id>
<history>
<date date-type="received">
<day>12</day>
<month>05</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>05</day>
<month>09</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2017 Liu, Yu, Dong, Hu and Xu.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Liu, Yu, Dong, Hu and Xu</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p><bold>Background:</bold> Acetolactate synthase (ALS)-inhibiting herbicides amidosulfuron (Hoestar) is an efficient gametocide that can induce male sterility in rapeseed (<italic>Brassica napus</italic> L.). We conducted an integrated study of cytological, transcriptomic, and physiological analysis to decipher the gametocidal effect of amidosulfuron.</p>
<p><bold>Results:</bold> In the first several days after exposure to amidosulfuron at a gametocidal dose of ca. 1 &#x003BC;g per plant, the plants showed the earliest symptoms including short retard of raceme elongation, slight chlorosis on leaf, and decrease of photosynthesis rate. Chloroplasts in leaf and anther epidermis, and tapetal plastids were deformed. Both tapetal cell and uni-nucleate microspore showed autophagic vacuoles and degenerated quickly. The amidosulfuron treatment caused reduction of photosynthetic rate and the contents of leaf chlorophyll, soluble sugar and pyruvate, as well as content alteration of several free amino acids in the treated plants. A comparison of transcriptomic profiling data of the young flower buds of the treated plants with the control identified 142 up-regulated and 201 down-regulated differential expression transcripts with functional annotations. Down-regulation of several interesting genes encoding PAIR1, SDS, PPD2, HFM1, CSTF77, A6, ALA6, UGE1, FLA20, A9, bHLH91, and putative cell wall protein LOC106368794, and up-regulation of <italic>autophagy-related protein ATG8A</italic> indicated functional abnormalities about cell cycle, cell wall formation, chloroplast structure, and tissue autophagy. Ethylene-responsive transcription factor RAP2-11-like was up-regulated in the flower buds and ethylene release rate was also elevated. The transcriptional regulation in the amidosulfuron-treated plants was in line with the cytological and physiological changes.</p>
<p><bold>Conclusions:</bold> The results suggested that metabolic decrease related to photosynthesis and energy supply are associated with male sterility induced by amidosulfuron. The results provide insights into the molecular mechanisms of gametocide-induced male sterility and expand the knowledge on the transcriptomic complexity of the plants exposure to sulfonylurea herbicide.</p></abstract>
<kwd-group>
<kwd><italic>Brassica napus</italic></kwd>
<kwd>gametocide</kwd>
<kwd>acetolactate synthase</kwd>
<kwd>amidosulfuron</kwd>
<kwd>plastid</kwd>
<kwd>male sterility</kwd>
</kwd-group>
<contract-num rid="cn001">2016YFD0101300</contract-num>
<contract-sponsor id="cn001">Ministry of Science and Technology of the People&#x00027;s Republic of China<named-content content-type="fundref-id">10.13039/501100002855</named-content></contract-sponsor>
<counts>
<fig-count count="10"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="48"/>
<page-count count="20"/>
<word-count count="11445"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>Significant heterosis (hybrid vigor) for seed yield and other traits in rapeseed (<italic>Brassica napus</italic> L.), which is one of the important sources of edible oil in the world after soybean and palm, is well-documented (Yu et al., <xref ref-type="bibr" rid="B43">2005</xref>). A key step in the utilization of heterosis is to control out-crossing in the maternal line, which can be achieved by either chemical induced or inheritable male sterility. Although, some inheritable male sterility systems including genic male sterility and cytoplasmic male sterility are often used, they require time- and labor-consuming pre-breeding efforts to create different lines that are named male sterile line, maintainer, and restorer. Some male sterility-induced systems also showed penalties on seed-set, quality traits, and/or disease resistance (Chakrabarty et al., <xref ref-type="bibr" rid="B2">2015</xref>; Xia et al., <xref ref-type="bibr" rid="B36">2016</xref>; Dey et al., <xref ref-type="bibr" rid="B7">2017</xref>). The chemically induced male sterility (CIMS) approach employs male gametocide to induce male sterility in sensitive plant and therefore selfing of the plant is avoided and outcrossing promoted. This method does not require too much pre-breeding work. Nevertheless, obtention of highly efficient gametocides is the first task in a breeding scheme using CIMS. Some herbicides that inhibit acetolactate synthase (ALS; EC 4.1.3.18), such as tribenuron-methyl (Express) and amidosulfuron (Hoestar/Gratil), were showed to be able to induce complete male sterility in many cruciferous species when they were applied at trace amounts (about 1% dosage recommended for weed control; Yu et al., <xref ref-type="bibr" rid="B38">2006</xref>, <xref ref-type="bibr" rid="B41">2009</xref>, <xref ref-type="bibr" rid="B42">2017</xref>; Yu and He, <xref ref-type="bibr" rid="B37">2014</xref>; Li et al., <xref ref-type="bibr" rid="B14">2015</xref>). In the last decade, over 20 commercial hybrid rapeseed varieties based on CIMS have been registered in China, for examples, Shaanyou1209, Zhongyouza19, Qinyou33, and Yuhuang1. Owing to the wide application of acetolactate synthase-inhibiting gametocides in China, CIMS is becoming an important approach for fast utilization of the newly derived breeding lines.</p>
<p>ALS is the key enzyme that catalyzes the reaction to synthesize three branched-chain amino acids (BCAAs) including leucine, valine, and isoleucine in plants and some microbes. ALS-inhibitors belonging to sulfonylurea, imidazolinone, triazolopyrimidine, and other chemical families are widely used for weed control because of their large spectrum of control activity, high crop selectivity, and low mammalian toxicity (Zhou et al., <xref ref-type="bibr" rid="B47">2007</xref>). Oilseed rape is very susceptible to sulfonylurea herbicides and thus most sulfonylurea herbicides have strong gametocidal effect on it (Yu and He, <xref ref-type="bibr" rid="B37">2014</xref>). Amidosulfuron and tribenuron- methyl are of the most useful gametocides for <italic>B. napus</italic> among sulfonylurea herbicides. Our findings of gametocidal effect of those chemicals provided a novel function of ALS-inhibiting herbicides.</p>
<p>Although, ALS had been proven to be the site of action (McCourt et al., <xref ref-type="bibr" rid="B17">2006</xref>), the mechanism through ALS-inhibitors cause phytotoxicity has progressed unprecedentedly in the last two decades. Physiology, genetics, molecular, and chemical structure aspects caused by ALS-inhibiting herbicides have been discussed (Reviewed by Zhou et al., <xref ref-type="bibr" rid="B47">2007</xref>). Except BCAAs starvation (Ray, <xref ref-type="bibr" rid="B23">1984</xref>), other hypothesis about secondary effects of ALS inhibition, such as accumulation of pyruvate and 2-ketobutyrate or 2-aminobutyrate, inhibition of DNA synthesis, disruption of photoassimilate translocation, and anaerobic respiration, have also been implicated in the mechanism of plant death caused by ALS-inhibiting herbicides (reviewed by Zhou et al., <xref ref-type="bibr" rid="B47">2007</xref>). However, there are still some disputations and doubts on the precise mechanisms that need further probing into (Zhou et al., <xref ref-type="bibr" rid="B47">2007</xref>).</p>
<p>A few of studies involving transcriptional analyses had been undertaken to decipher the diagnostic detection, mode of action, or detoxification mechanisms of ALS-inhibitors (Glombitza et al., <xref ref-type="bibr" rid="B12">2004</xref>; Pasquer et al., <xref ref-type="bibr" rid="B19">2006</xref>; Manabe et al., <xref ref-type="bibr" rid="B16">2007</xref>; Das et al., <xref ref-type="bibr" rid="B5">2010</xref>). Time course analysis of imidazolinone-sensitive and resistant mutants in <italic>Arabidopsis thaliana</italic> identified early-response genes related to detoxification while later-response genes participated in biosynthesis of amino acids, secondary metabolites and tRNAs (Manabe et al., <xref ref-type="bibr" rid="B16">2007</xref>). A focused DNA array comprising of 267 genes related to secondary metabolism could be used to differentiate the effects of primisulfuron and prosulfuron exposure on <italic>A. thaliana</italic> (Glombitza et al., <xref ref-type="bibr" rid="B12">2004</xref>). Many effects of the ALS-inhibiting herbicides had been revealed based on transcriptional changes and a few genes were found to be able to differentiate responses to closely related herbicides in <italic>A. thaliana</italic> and <italic>B. napus</italic> (Das et al., <xref ref-type="bibr" rid="B5">2010</xref>). Except the above-mentioned reports of gene expression analysis of plants to different ALS-inhibiting herbicides (Das et al., <xref ref-type="bibr" rid="B5">2010</xref>), few studies (Cheng et al., <xref ref-type="bibr" rid="B4">2013</xref>; Li et al., <xref ref-type="bibr" rid="B14">2015</xref>) were carried out to understand the mechanism of inducing male sterility by trace amounts of ALS-inhibiting gametocide. Thus, the inducing mechanism of male sterility in the susceptible plants by these herbicides remains unknown. For gametocidal effect of sub-herbicidal level of tribenuron-methyl, monosulfuron ester sodium (MES, belongs to sulfonylurea family) and imazethapyr (belongs to imidazolinone family), blocks of carbohydrate and lipid metabolism and autophagic cell death were suggested (Qian et al., <xref ref-type="bibr" rid="B22">2011</xref>; Li et al., <xref ref-type="bibr" rid="B14">2015</xref>; Zhao et al., <xref ref-type="bibr" rid="B46">2015</xref>). Transcriptome analysis using microarray (Li et al., <xref ref-type="bibr" rid="B14">2015</xref>) identified 1,501 differentially expressed transcripts (DETs) in the leave and anthers of the treated plants. Trace concentrations of herbicide imazethapyr, which can be used as a gametocide for both rapeseed and wheat (Yu, <xref ref-type="bibr" rid="B40">2009</xref>), inhibited some key genes regulating anther and pollen biosynthesis in <italic>A. thaliana</italic> (Qian et al., <xref ref-type="bibr" rid="B21">2015</xref>).</p>
<p>Sulfonylurea herbicides such as amidosulfuron are fully systemic and slower to act than traditional herbicides, moving throughout the weed and resulting in high levels of control. Amidosulfuron had similar gametocidal effect among different cultivars in <italic>B. napus</italic>, although the influences of plant biomass and leaf cuticle were inevitable (Yu et al., <xref ref-type="bibr" rid="B41">2009</xref>; Yu and He, <xref ref-type="bibr" rid="B37">2014</xref>). Foliar application of amidosulfuron at the doses from 60 to 90 mg/ha resulted in over 95% male sterility in the treated <italic>B. napus</italic> plants as well as lower phytotoxicity on pistil fertility (Yu et al., <xref ref-type="bibr" rid="B41">2009</xref>; Yu and He, <xref ref-type="bibr" rid="B37">2014</xref>). The objective of this study was to uncover the physiological and transcriptional responses of rapeseed to amidosulfuron exposure and to find possible associations of them with amidosulfuron phytotoxic effects, particularly male sterility. We investigated the morphological, physiological, and cytological differences between the male sterile amidosulfuron-treated plants and fertile control at different developmental stages. We also conducted a transcriptomic comparison between juvenile flower buds of the treated plants and the control. The cytological and transcriptomic alterations in the treated plants were in line with reduction of chlorophyll, soluble sugar, pyruvate and photosynthetic rate, and increase of ethylene release rate. This results gave us some clues to decipher the gametocidal mechanism of amidosulfuron and other ALS-inhibitors.</p>
</sec>
<sec sec-type="materials and methods" id="s2">
<title>Materials and methods</title>
<sec>
<title>Plant material and amidosulfuron treatment</title>
<p>The plants of winter rapeseed cv. Qinyou3 were grown in the experimental field of Northwest A&#x00026;F University from mid-September to late May of the next year. In the spring, the bolting plants with the longest flower bud &#x02264;3 mm were foliar-sprayed with 0.2 mg a.i./L amidosulfuron (Gratil, 75% water dispersible granule) solution for about 5 mL per plant. The solution was added with a surfactant sodium alkylethersulfate (Biopower&#x02122;, Bayer AG, Monheim am Rhein, Germany) at a concentration of 0.2 mL/L. This treatment had at least three replicates, each containing of about 70 plants. An additional set of plants, used as the negative control, were sprayed only with the water containing the surfactant.</p>
</sec>
<sec>
<title><italic>In vivo</italic> activity of ALS</title>
<p>In order to know how the gametocide amidosulfuron affect plant ALS proteins <italic>in vivo</italic>, the activities of ALS enzymes in mature leaf and young flower bud (length &#x02264; 3 mm) were assayed0, 1, 4, 7, and 13 days after treatment (DAT). The <italic>in vivo</italic> assay ALS activity, which was represented by accumulation of the substrate acetolactate, can monitor the activity inhibition by the ALS-inhibiting herbicide that is absorbed and even partially degraded by plant (Gerwick et al., <xref ref-type="bibr" rid="B10">1993</xref>; Simpson et al., <xref ref-type="bibr" rid="B32">1995</xref>). It had advantages over <italic>in vitro</italic> assay because the latter method is used to compare the activity of ALS proteins, isolated from different genotypes, reacting with exogenous substrate, and is not appropriate in cases of metabolic detoxification of the herbicide, unsteady supply of substrate, or altered expression of the <italic>ALS</italic> genes in the treated plants. In brief, the plants in a treatment were sprayed with 0.5 mol/L of 1,1-cyclopropanedicarboxylate (CPCA), a specific inhibitor of ketol-acid reductoisomerase (KARI) subsequent to ALS, to accumulate ALS enzyme substrate acetolactate. After 24 h, leaf or flower bud samples were collected from the CPCA treated plants and 1 g sample was extracted with 5 mL of 0.05 M sodium phosphate buffer (pH 7.2) and centrifuged 10 min at 8,000 &#x000D7; <italic>g</italic>. 0.5 mL supernatant was incubated at 60&#x000B0;C for 10 min. 0.1 mL of 1 M sulfuric acid was added to stop the catalysis of ALS enzyme and the incubation was maintained for 30 min to generate acetoin. Then 1 mL of 0.5% (W/V) creatine (prepared in 2 M NaOH) and 1 mL of 5% (W/V) alpha naphthol (in 2 M NaOH) were added and kept at 37&#x000B0;C for 30 min to transform acetoin into a red compound. Supernatant was obtained after an instant centrifugation and detected by using a spectrophotometer. Absorbance of supernatant was measured at 530 nm (A530) and then ALS activity was calculated as A530 per hour by 1 g fresh sample. Each samples had three replicates and Student&#x00027;s <italic>t</italic>-test was used for comparisons of the same tissues collected on the same day.</p>
</sec>
<sec>
<title>Physiological traits</title>
<p>The photosynthetic rate of the plants 0, 2, 4, 6 DAT was measured using a Li-6400 portable photosynthetic system (Li-COR Inc., Linco, NE, USA). The upper mature leave of five plants in each treatment were used for the measurement. The measurements were done at 28&#x000B0;C with supply of 500 &#x003BC;mol/(m<sup>2</sup>&#x000B7;s) CO<sub>2</sub> and 1,000 &#x003BC;mol/(m<sup>2</sup>&#x000B7;s) artificial light. Content of soluble sugar, chlorophyll, and pyruvate were determined in the upper leaf of the plants 1, 3, and 5 DAT using colorimetric methods described by Chen (<xref ref-type="bibr" rid="B3">2002</xref>). Student&#x00027;s <italic>t</italic>-test was used for pairwise comparisons of these variables.</p>
</sec>
<sec>
<title>Assay of ethylene release rate</title>
<p>0.5 g sample of small flower buds (length &#x02264;3.0 mm) with three replicates were collected 1, 3, and 5 DAT. The samples were put in 25 mL bottles with rubber stoppers and then the bottles were sealed by water. The gas released by each sample, obtained after a preservation of 12 h in dark, was assayed by a GC2010Plus gas chromatographer (Shimadzu, Tokyo, Japan). One milliliter of collected gas was injected into the chromatographer at a speed of 1.5 mL/min. The carrier gas N<sub>2</sub> and the make-up gas H<sub>2</sub> were at a same flow rate of 35 mL/min. The temperature of injector, detector, and oven were 100, 150, and 70&#x000B0;C, respectively. A hydrogen ion flame detector and stainless steel column packed with GDX-502 were used in the chromatographer. The retention time was 2.5 min.</p>
</sec>
<sec>
<title>Content of free amino acid</title>
<p>The stamen of 2&#x02013;3 mm long flower buds of the plants 3 DAT were sampled on ice. A 1.0 g sample was homogenized in 80% ethanol. The homogenates were filtered, transferred into an evaporating dish, and dried on water bath at 80&#x000B0;C. The amino acid sediment was dissolved in a mix of 15 mL of sodium citrate buffer (pH 2.2) and 5 mL of 5% sulfosalicylic acid, and centrifuged 15 min at 10,000 &#x000D7; <italic>g</italic>. Free amino acid composition in the supernatant was detected at a Beckman 121 MB amino acid analyzer (Beckman Instruments Inc., CA, USA). Both the amidosulfuron treatment and the control had three independent biological replicates.</p>
</sec>
<sec>
<title>Cytological study</title>
<p>When the treated plants were blossoming, aceto-carmine staining of anther was performed to examine the microspore and pollen developmental stage under a light microscopy. Flower buds from male fertile and sterile plants were collected according to their developmental stages. The leave and anthers from these grouped buds were fixed by glutaraldehyde-osmium tetroxide, embedded in epoxy resin. The specimens were cut into 0.05 &#x003BC;m ultrathin sections, stained in uranyl acetate -lead citrate solution, and then observed under a transmission electron microscopy (TEM). The detailed process of section preparation was described in a previous study (Yu et al., <xref ref-type="bibr" rid="B39">2016</xref>). The structural abnormality that was observed in the most samples of the same developmental stage in the treated plants were recorded.</p>
</sec>
<sec>
<title>RNA extraction</title>
<p>Based on cytological observation, we knew that the key stage sensitive to gametocide is pollen mother cell (PMC) to uni-nucleate microspore. Thus, the corresponding young flower buds (length &#x02264; 3 mm) from the plants 5 DAT and the control plants (designed as DAT1, DAT2, DAT3 for the treatment and F1, F2, F3 for the control) were dissected, put into RNAlater (LC Science, Houston, USA) for 24 h, and stored at &#x02212;80&#x000B0;C. Total RNAs were extracted using the Trizol&#x000AE; Reagent (Invitrogen, USA) and purified using TRK1001 Kit (LC Science, Houston, USA). The purity and integrity of total RNA samples were analyzed by Bioanalyzer 2100 with RNA 6000 Nano LabChip Kit (Agilent, CA, USA). We used 10 &#x003BC;g total RNA from each sample to create normalized cDNAs. Both the amidosulfuron treatment and the control had three independent biological replicates.</p>
</sec>
<sec>
<title>RNA sequencing</title>
<p>Digital gene-expression tag profiling (DGE) is a simple and cost-efficient method to analyse transcriptome using Illumina Solexa technology. Two groups of DGE libraries, each in three biological replicates (DAT1, DAT2, DAT3 and F1, F2, F3), were constructed using the above-mentioned cDNAs of young flower buds with Illumina&#x00027;s Digital Gene Expression Tag Profiling Kit according to the manufacturer&#x00027;s protocol. We performed the single end sequencing on an Illumina GAIIX platform following the vendor&#x00027;s protocol. The adaptor sequences, tags with low quality sequences, and unknown nucleotides N were filtered from the raw data to obtain clean reads with 36 nt in length. The clean reads were deposited in NCBI under Gene Expression Omnibus accession <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="GSE69679">GSE69679</ext-link>. All the reads were aligned with <italic>Brassica</italic> genome in both JGI database (<ext-link ext-link-type="uri" xlink:href="http://genome.jgi.doe.gov/">http://genome.jgi.doe.gov/</ext-link>) and NCBI database (<ext-link ext-link-type="uri" xlink:href="http://www.ncbi.nlm.nih.gov/">http://www.ncbi.nlm.nih.gov/</ext-link>) by using Bowtie2 v2.1.0 (<ext-link ext-link-type="uri" xlink:href="http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.1.0/">http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.1.0/</ext-link>), and only 1 bp mismatch was allowed. We also aligned the clean tags with a previous transcriptome assembly of rapeseed flower buds. The assembly contained 135,702 unigenes (file Trinity_rapeseed.fsa under TSA accession <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="GDFQ00000000">GDFQ00000000</ext-link>), most of which had been successfully annotated in various databases including NCBI non-redundant, JGI, Pfam, SwissProt, and Clusters of Orthologous Groups of proteins (unpublished). The number of perfect reads matching to each unigene was normalized to the number of Reads Per Kilobase of exon model per Million mapped reads (RPKM). The low-frequency transcripts with the 3rd quartile of counts in all samples &#x0003C; 10 were filtered. Based on expression levels, the significant DETs among the two groups of samples were identified with criteria of false discovery rate (FDR) &#x02264;0.05 and fold-change &#x02265;2. The sequence of each DET was searched in NCBI nucleotide collection database by BLAST and the function was annotated by the references in Uniprot (<ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/">http://www.uniprot.org/</ext-link>) and gene ontology (GO) database (<ext-link ext-link-type="uri" xlink:href="http://www.geneontology.org/">http://www.geneontology.org/</ext-link>). The hierarchical cluster of the DETs was performed by using Cluster 3.0 (<ext-link ext-link-type="uri" xlink:href="http://bonsai.hgc.jp/&#x0007E;mdehoon/software/cluster/software.htm">http://bonsai.hgc.jp/&#x0007E;mdehoon/software/cluster/software.htm</ext-link>). The GO networks for down-regulated and up-regulated genes were drew by the BiNGO plugin of Cytoscape software (<ext-link ext-link-type="uri" xlink:href="http://www.cytoscape.org/">http://www.cytoscape.org/</ext-link>). All possible interactions among the DETs were revealed based on the known and predicted information of Arabidopsis in STRING (<ext-link ext-link-type="uri" xlink:href="https://string-db.org/">https://string-db.org/</ext-link>).</p>
</sec>
<sec>
<title>Gene expression analysis by quantitative real-time PCR (QRT-PCR)</title>
<p>Some tissues including upper leaf, small buds of ca. 1 mm length, medium buds of ca. 3 mm, large buds of ca. 5 mm, and anthers of the medium buds were collected from at least 5 plants 3 DAT, with three independent biological replicates for each sample. The RNA was extracted and cDNA was synthesized with 250 ng of total RNA using PrimeScript RT reagent Kit (Takara, Otsu, Japan). Gene-specific primers (Table <xref ref-type="supplementary-material" rid="SM1">S1</xref>) were designed for two function-important <italic>ALS</italic> loci (<italic>ALS1</italic> and <italic>ALS3</italic>; Zhao et al., <xref ref-type="bibr" rid="B46">2015</xref>) and 13 selected DETs according to the unigene sequences using the Beacon Designer 7.0 (Bio-Rad, CA, USA). Real-time PCR assays in triplicate were performed using SYBR Green PCR Master Mix (Applied Biosystems, CA, USA) on a QuantStudio 3 thermal cycler (Thermo Fisher Scientific, CA, USA). Tissues from water-treated plants were employed as negative control and <italic>B. napus</italic> beta-actin7 gene was used as the internal control for data normalization. The relative fold change of each gene in the different samples was calculated by using threshold cycle relative quantification parameter 2<sup>&#x02212;&#x00394;</sup>CT (Schmittgen and Livak, <xref ref-type="bibr" rid="B28">2008</xref>), where &#x00394;CT &#x0003D; (Ct<sub>gene</sub> - CT<sub>actin</sub>). Student&#x00027;s <italic>t</italic>-test was used for pairwise comparisons between the same type of tissues.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec>
<title>Morphological changes of rapeseed exposed to gametocide amidosulfuron</title>
<p>The exposure to 5 mL of 0.2 mg/L amidosulfuron per plant resulted in no reduction of mature plant height but caused a delay in flowering of about 1&#x02013;2 days, as in our previous study (Yu et al., <xref ref-type="bibr" rid="B41">2009</xref>). However, due to a need to select suitable amidosulfuon dose to balance the gametocidal effect on the anther and other phytotoxic effects on the pistil and vegetation organs, some side effects that were showed as chlorosis on young leaf (Figure <xref ref-type="fig" rid="F1">1A</xref>), short retard of raceme elongation, and increase of anthocyanin (Figure <xref ref-type="fig" rid="F1">1B</xref>) in 2&#x02013;8 DAT were observed in all the treated plants. Excess exposure (3 &#x003BC;g per plant or higher dose) would inhibit the plant growth and depigment the petal (Figure <xref ref-type="fig" rid="F1">1B</xref>). The filaments of the 0.2 mg/L amidosulfuron treated plants were much shorter and the anthers were thinner than that of the control (Figure <xref ref-type="fig" rid="F1">1C</xref>). Complete male sterility in rapeseed plants could be easily achieved by amidosulfuron treatment. The pollen grains of sterile anthers in the treated plants were unviable, without aceto-carmine staining (Figure <xref ref-type="fig" rid="F1">1D</xref>). In addition, we made a postponed spraying to the day when the first flower was opening. The treated plants could maintained fertile phase for about 7&#x02013;9 days and then the subsequent flowers, whose anther development was at the stage of vacuolated microspore when they were subjected to the treatment, converted to male sterile state. This suggested that amidosulfuron mainly restrain the pollen development before microspore mitosis. The morphological changes on the stem elongation, leaf color, and flower traits suggested phytotoxic effect of the treatment on cell growth, chloroplast structure, and flavonoid biosynthesis.</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Morphological characteristics and pollen grains of amidosulfuron-treated plants. <bold>(A)</bold> Chlorosis on the treated plants 5 DAT. <bold>(B)</bold> Inflorescence with anthocyanin accumulation (asterisk) and petal depigment due to higher dose (0.6 mg/L) exposure. <bold>(C)</bold> Size reduction of filament and anther in the treated plant after uni-nucleate microspore stage (bud length about 3 mm). <bold>(D)</bold> Viable pollen grains in the control are deep stained by the aceto-carmine, while the unviable pollen grains in the treatment are not stained. An, anther; Fil, filament.</p></caption>
<graphic xlink:href="fpls-08-01625-g0001.tif"/>
</fig>
</sec>
<sec>
<title>Effect of amidosulfuron treatment on chloroplast structure, photosynthesis, and energy metabolite</title>
<p>Since the symptom of young leaf chlorosis suggested that the amidosulfuron treatment could affect the photosynthetic capability, we also paid attention on the chloroplast structure in the anther and leaf. The normal chloroplasts in leaf mesophyll cell were almost spherical and contained numerous grana and stacks of thylakoid membranes, (Figures <xref ref-type="fig" rid="F2">2A,C</xref>). In contrast, the amidosulfuron-treated mesophyll chloroplasts were generally flat with necrotic cavities and undeveloped grana (Figures <xref ref-type="fig" rid="F2">2B,D</xref>). These results suggests that amidosulfuron treated plants may have less photosynthetic capacity than control plants. Moreover, the chloroplasts in epidermal cells of the treated plants lost thylakoid membrane, grana stacks and other components (as in Figure <xref ref-type="fig" rid="F2">2E</xref>), giving the tissues a distinctive appearance (Figure <xref ref-type="fig" rid="F2">2F</xref>). The chloroplasts in leaf, epidermis, and endothecium of the anther were obviously destructed by the amidosulfuron treatment.</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Comparison between mesophyll and epidermal chloroplasts of the control and treated plants. <bold>(A)</bold> The mesophyll cell chloroplasts of the control contain numerous grana, stacks of appressed thylakoid membranes. <bold>(B)</bold> In contrast to the plump chloroplasts in the control, the chloroplasts in the treated plants are flat and undeveloped. <bold>(C)</bold> The magnified structures show electron-dense lipid droplets known as plastoglobuli accumulate. <bold>(D)</bold> Flat chloroplasts with undeveloped thylakoid membrane and destructed zone pale in color (Arrowhead). <bold>(E)</bold> Chloroplasts in anther epidermis of the control contain intrinsic thylakoid membranes and starch granule. <bold>(F)</bold> The treated plants show a distinctive appearance, with loss of grana stacks and few plastoglobuli. Chl, chloroplast; G, grana thylakoids; S, stroma. Scale bar &#x0003D; 5 &#x003BC;m <bold>(A,B)</bold>, 0.5 &#x003BC;m <bold>(C,D)</bold>, and 1 &#x003BC;m <bold>(E,F)</bold>.</p></caption>
<graphic xlink:href="fpls-08-01625-g0002.tif"/>
</fig>
<p>Because ALS is the direct target of sulfonylurea herbicides, 0.2 mg/L amidosulfuron exposure obviously inhibited the <italic>in vivo</italic> ALS activity in leaf and flower bud (Figure <xref ref-type="fig" rid="F3">3A</xref>). The ALS activity of flower bud was higher than mature leaf but decreased more after the exposure. Leaf photosynthesis showed a severe descent in amidosulfuron treated plants (Figure <xref ref-type="fig" rid="F3">3B</xref>) detected by using the Li-6400 portable photosynthetic system. Moreover, application of amidosulfuron also reduced the content of leaf chlorophyll, pyruvate, and soluble sugar (Figures <xref ref-type="fig" rid="F3">3C&#x02013;E</xref>) within the several days after treatment. Thus, we assumed that the destruction of chloroplast and incapability of photosynthesis were likely to be a major physiological effect of the amidosulfuron treatment at gametocidal dose. In addition, ethylene release rate in the flower bud samples after amidosulfuron treatment had a slightly decreased on 1 DAT and then increased significantly on 3 and 5 DAT (Figure <xref ref-type="fig" rid="F3">3F</xref>).</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Effect of amidosulfuron on <italic>in vivo</italic> ALS activity, photosynthetic rate, the amount of leaf chlorophyll, soluble sugar, pyruvate, and ethylene release rate in the flower buds several days after amidosulfuron treatment (DAT). <bold>(A)</bold> <italic>In vivo</italic> ALS activity. <bold>(B)</bold> Photosynthesis rate. <bold>(C)</bold> Content of chlorophyll. <bold>(D)</bold> Content of soluble sugar. <bold>(E)</bold> Content of pyruvate. <bold>(F)</bold> Release rate of ethylene. Error bars represent &#x000B1; one standard deviation (<italic>n</italic> &#x0003D; 3). <sup>&#x0002A;</sup> and <sup>&#x0002A;&#x0002A;</sup> indicate significant difference at confidential level of 0.05 and 0.01 by Student&#x00027;s <italic>t</italic>-test.</p></caption>
<graphic xlink:href="fpls-08-01625-g0003.tif"/>
</fig>
</sec>
<sec>
<title>Changes in free amino acid pool and BCAA content</title>
<p>The content of 16 kinds of free amino acids except threonine (Figure <xref ref-type="fig" rid="F4">4</xref>) could be detected in the anthers of the treated plants and the corresponding control. The amidosulfuron treatment led to a slight rise (15.11%) of total free amino acid and an obvious change of the proportions of some components (Figure <xref ref-type="fig" rid="F4">4</xref>). Surprisingly, the total amount of the three BCAAs was reduced only by 4.98%, valine decreased by 21.40% but isoleucine and leucine increased by 11.33 and 32.64%, respectively. In addition, the content of cysteine declined while proline, which has long been regarded as pivotal amino acids for male sterility, ascended significantly. To sum up, the amidosulfuron treatment did not significantly deprive BCAAs as previous study assumed (Ray, <xref ref-type="bibr" rid="B23">1984</xref>), but change the proportions of several components in the free amino acid pool.</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p>The content and percentage of 16 free amino acids in the anthers of the control and amidosulfuron treatment. Error bars represent &#x000B1; one standard deviation (<italic>n</italic> &#x0003D; 3). <sup>&#x0002A;</sup> and <sup>&#x0002A;&#x0002A;</sup> symbols indicate the value is significant at 90 and 95% confidential level, respectively. <bold>(A)</bold> The sum of 16 amino acids and the content of four most abundant amino acids. <bold>(B)</bold> The content of three branched-chain amino acids and the others. <bold>(C)</bold> The percentage of 16 amino acids in the total free amino acids pool.</p></caption>
<graphic xlink:href="fpls-08-01625-g0004.tif"/>
</fig>
</sec>
<sec>
<title>Cytological characteristics of male sterility induced by amidosulfuron</title>
<p>Microscopic studies revealed that the pollen abortion in amidosulfuron treated plants was associated with abnormal behaviors both in the tapetal cells and PMCs with additional defects found in both compartments at the later microspore stages. Normal tapetal cells should contain abundant organelles such as the nucleus, vacuoles, vesicles, endoplasmic reticulum, and plastids (Figures <xref ref-type="fig" rid="F5">5A&#x02013;D</xref>). In the treated plants (Figures <xref ref-type="fig" rid="F5">5E&#x02013;H</xref>), however, both PMCs and tapetal cells were damaged and showed shriveled nucleus and cytoplasm (Figure <xref ref-type="fig" rid="F5">5F</xref>). The number of organelles decreased and a lot of large vacuoles containing autophagosomes formed in tapetum and in the microspore (Figure <xref ref-type="fig" rid="F5">5G</xref>, Arrowhead). Degeneration of plastid, mitochondria, and phagocytosis were observed both in the microspore and tapetal cell of the treated plants (Figures <xref ref-type="fig" rid="F5">5G,H,M</xref>). At the mid microspore stage, the structure of elaioplast in the treated plants was obscure and some autophagic vacuole formed in tapetal cell (Figure <xref ref-type="fig" rid="F5">5H</xref>). By the vacuolated microspore stage, the tapetal cells should contain large number of elaioplasts, which were showed as plastoglobuli that contain nonosmiophilic bodies (Figure <xref ref-type="fig" rid="F5">5I</xref>). However, in the treated plants, the tapetum was disintegrated and the elaioplasts were stained deeply, with malformed structure (Figure <xref ref-type="fig" rid="F5">5M</xref>). The pollen grains in the control plant had well-formed organelles and pollen walls (Figures <xref ref-type="fig" rid="F5">5J&#x02013;L</xref>). In the aborted microspores, cytoplasm was degraded by autophagic vacuoles, producing large vacuoles (Figure <xref ref-type="fig" rid="F5">5N</xref>). Then the microspore cytoplasm in the treated plant was completely degraded (Figures <xref ref-type="fig" rid="F5">5O,P</xref>). In addition, exine was thickened but poorly differentiated (Figures <xref ref-type="fig" rid="F5">5N,P</xref>). These evidenced aberrant lipid metabolism and transportation. In one word, the amidosulfuron treatment resulted in autophagy in the tapetal cells and microspores at early development stages and consequently, defective elaioplasts, and pollen exine.</p>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p>Transmission electron micrographs of cross-sections through anther of the amidosulfuron-treated plants and the control. At uni-nucleate microspore stage, autolysosomes or large vacuoles form in tapetum and microspore of the treated plants. Then tapetum and microspore breakdown quickly. <bold>(A)</bold> The fertile anthers at sporogenous cell (Sp) stage. <bold>(B)</bold> Pollen mother cells in the fertile anther. <bold>(C)</bold> Uni-nucleate microspore and tapetum in the fertile anther. <bold>(D)</bold> Plentiful juvenile elaioplasts (derived from plastid) in condensed cytoplasm. <bold>(E)</bold> Sporogenous cell in the treated plants. <bold>(F)</bold> Tapetum with large cytoplasmic vacuoles in the treated plants. <bold>(G)</bold> At uni-nucleate microspore stage, premature breakdown begin and large vacuoles (Arrowheads) containing autophagosomes form in tapetum and microspore. <bold>(H)</bold> Malformed elaioplasts in the treatment. <bold>(I)</bold> Elaioplasts in the normal tapetum, full with nonosmiophilic globular. <bold>(J)</bold> Vacuolated microspore in normal plants. <bold>(K)</bold> Fertile pollen contains plentiful organelle inside, with exine outside. <bold>(L)</bold> Fertile pollen full with organelle and osmiophilic compounds. <bold>(M)</bold> The degraded tapetum showing elaioplasts and tapetosomes and accumulated lipid. <bold>(N)</bold> Vacuolar or autophagic cell death (Arrowheads) in the microspores of the treated plants. <bold>(O)</bold> Degenerated tapetum and pollen. <bold>(P)</bold> Aborted pollen in the treated anthers. E, elaioplast; Ex, exine; M, microspore; PMC, pollen mother cell; Po, pollen grain. Sp, sporogenous cell; T, tapetum; Scale bars &#x0003D; 10 &#x003BC;m <bold>(A-C,E-G,L,O,P)</bold> and 2 &#x003BC;m <bold>(D,H&#x02013;K,M,N)</bold>.</p></caption>
<graphic xlink:href="fpls-08-01625-g0005.tif"/>
</fig>
</sec>
<sec>
<title>Analyses of differential gene expression in response to ALS-inhibiting herbicides</title>
<p>In order to profile the DGE tags, we sequenced two groups of cDNA libraries of young flower buds: group DAT for amidosulfuron-treated plants and group F for the control plants, on Illumina Solexa sequencing platform. We obtained 7,911,523 and 9,189,278 clean reads (under GEO accession <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="GSE69679">GSE69679</ext-link>), respectively, after a raw tags quality filter. The clean reads were mapped based on <italic>B. napus</italic> genome information in JGI and NCBI databases, as well as a previous rapeseed flower bud transcriptome assembly (unpublished), and 105,220 and 108,161 transcripts were identified in the treatment and the control, respectively. To compare differential expression patterns among the two groups of libraries, we normalized the tags distribution for gene expression level in each library to extract significant DETs. Totally, 193 up-regulated and 283 down-regulated DETs (Data Sheet <xref ref-type="supplementary-material" rid="SM2">S1</xref>) were extracted, out of which 142 and 201 transcripts, respectively, were functionally annotated by BLAST search in NCBI database (Data Sheet <xref ref-type="supplementary-material" rid="SM2">S1</xref>). The 343 annotated DETs could be assigned in to dozens of categories (Table <xref ref-type="table" rid="T1">1</xref>), in which important categories included meiosis, cell division, cell wall formation, cytoskeleton, gametophyte, chloroplast, RNA processing, DNA replication, protein synthesis and degradation, lipid metabolism, oxidoreductase, defense response, detoxification, and so on. The expression levels of five groups of DETs in the six samples were showed by heatmaps (Figure <xref ref-type="fig" rid="F6">6</xref>). Most genes belonging to the groups of anther and pollen development, cell wall construction, lipid metabolism, photosynthesis and sugar transport, and some key genes in the group of cell division and growth were down-regulated.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Functional classification of differentially expressed transcripts (DETs).</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Category</bold></th>
<th valign="top" align="center"><bold>Up-regulated</bold></th>
<th valign="top" align="left"><bold>Category</bold></th>
<th valign="top" align="center"><bold>Down-regulated</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Meiosis</td>
<td valign="top" align="center">4</td>
<td valign="top" align="left">Meiosis</td>
<td valign="top" align="center">6</td>
</tr>
<tr>
<td valign="top" align="left">Cell division</td>
<td valign="top" align="center">9</td>
<td valign="top" align="left">Cell division</td>
<td valign="top" align="center">8</td>
</tr>
<tr>
<td valign="top" align="left">Cell expansion</td>
<td valign="top" align="center">1</td>
<td valign="top" align="left">Cell expansion and growth</td>
<td valign="top" align="center">5</td>
</tr>
<tr>
<td valign="top" align="left">Cell wall</td>
<td valign="top" align="center">8</td>
<td valign="top" align="left">Cell wall</td>
<td valign="top" align="center">13</td>
</tr>
<tr>
<td valign="top" align="left">Cytoskeleton</td>
<td valign="top" align="center">1</td>
<td valign="top" align="left">Cytoskeleton</td>
<td valign="top" align="center">1</td>
</tr>
<tr>
<td valign="top" align="left">Gametophyte</td>
<td valign="top" align="center">1</td>
<td valign="top" align="left">Tapetum</td>
<td valign="top" align="center">4</td>
</tr>
<tr>
<td valign="top" align="left">Embryogenesis and megagametophyte</td>
<td valign="top" align="center">5</td>
<td valign="top" align="left">Gametophyte</td>
<td valign="top" align="center">2</td>
</tr>
<tr>
<td valign="top" align="left">Pollen tube</td>
<td valign="top" align="center">2</td>
<td valign="top" align="left">Embryogenesis and megagametophyte</td>
<td valign="top" align="center">1</td>
</tr>
<tr>
<td valign="top" align="left">Chloroplast</td>
<td valign="top" align="center">1</td>
<td valign="top" align="left">Pollen tube</td>
<td valign="top" align="center">1</td>
</tr>
<tr>
<td valign="top" align="left">Ribosome</td>
<td valign="top" align="center">14</td>
<td valign="top" align="left">Photosynthesis</td>
<td valign="top" align="center">5</td>
</tr>
<tr>
<td valign="top" align="left">RNA processing</td>
<td valign="top" align="center">14</td>
<td valign="top" align="left">Chloroplast</td>
<td valign="top" align="center">17</td>
</tr>
<tr>
<td valign="top" align="left">DNA replication</td>
<td valign="top" align="center">2</td>
<td valign="top" align="left">Mitochondria</td>
<td valign="top" align="center">6</td>
</tr>
<tr>
<td valign="top" align="left">Purine metabolism</td>
<td valign="top" align="center">3</td>
<td valign="top" align="left">RNA processing</td>
<td valign="top" align="center">3</td>
</tr>
<tr>
<td valign="top" align="left">Chromatin</td>
<td valign="top" align="center">2</td>
<td valign="top" align="left">DNA replication</td>
<td valign="top" align="center">1</td>
</tr>
<tr>
<td valign="top" align="left">tRNA ligase</td>
<td valign="top" align="center">5</td>
<td valign="top" align="left">Pyrimidine</td>
<td valign="top" align="center">1</td>
</tr>
<tr>
<td valign="top" align="left">Transcription and regulation</td>
<td valign="top" align="center">19</td>
<td valign="top" align="left">Transcription and regulation</td>
<td valign="top" align="center">3</td>
</tr>
<tr>
<td valign="top" align="left">Protein synthesis</td>
<td valign="top" align="center">2</td>
<td valign="top" align="left">Protein synthesis</td>
<td valign="top" align="center">2</td>
</tr>
<tr>
<td valign="top" align="left">Protein modification and degradation</td>
<td valign="top" align="center">25</td>
<td valign="top" align="left">Protein modification and degradation</td>
<td valign="top" align="center">10</td>
</tr>
<tr>
<td valign="top" align="left">Fatty acid and lipid</td>
<td valign="top" align="center">2</td>
<td valign="top" align="left">Chaperone</td>
<td valign="top" align="center">3</td>
</tr>
<tr>
<td valign="top" align="left">Transport</td>
<td valign="top" align="center">7</td>
<td valign="top" align="left">Fatty acid and lipid</td>
<td valign="top" align="center">14</td>
</tr>
<tr>
<td valign="top" align="left">Translocation</td>
<td valign="top" align="center">2</td>
<td valign="top" align="left">Carbohydrate</td>
<td valign="top" align="center">2</td>
</tr>
<tr>
<td valign="top" align="left">Defense response</td>
<td valign="top" align="center">6</td>
<td valign="top" align="left">Xlyoglucan degradation</td>
<td valign="top" align="center">2</td>
</tr>
<tr>
<td valign="top" align="left">Oxidoreductase</td>
<td valign="top" align="center">1</td>
<td valign="top" align="left">Transport</td>
<td valign="top" align="center">4</td>
</tr>
<tr>
<td valign="top" align="left">Detoxification</td>
<td valign="top" align="center">1</td>
<td valign="top" align="left">Sugar transport</td>
<td valign="top" align="center">4</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">Amino acid</td>
<td valign="top" align="center">2</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">Signal</td>
<td valign="top" align="center">3</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">Defense response</td>
<td valign="top" align="center">20</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">Oxidoreductase</td>
<td valign="top" align="center">4</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">Hormone response</td>
<td valign="top" align="center">3</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">Secondary metabolite</td>
<td valign="top" align="center">11</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">Glucosinolates degradation</td>
<td valign="top" align="center">4</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">Lignin</td>
<td valign="top" align="center">3</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p>Heatmaps of log-transformed expression level of five groups of selected DETs in the two groups of flower bud samples. DAT1, DAT2, and DAT3 represent the replicates of amidosulfuron treatment and F1, F2, and F3 represent the replicates of control. <bold>(A)</bold> Genes related to anther and pollen development. <bold>(B)</bold> Genes related to photosynthesis and sugar transport. <bold>(C)</bold> Genes related to lipid metabolism. <bold>(D)</bold> Genes related to cell cycle. <bold>(E)</bold> Genes related to cell wall construction. The detailed gene information was listed in Data Sheet <xref ref-type="supplementary-material" rid="SM2">S1</xref>, highlighted with yellow background color.</p></caption>
<graphic xlink:href="fpls-08-01625-g0006.tif"/>
</fig>
<p>We searched those DETs for GO terms and 357 GOs were significantly enriched by BiNGO program with hypergeometric test (Figure <xref ref-type="fig" rid="F7">7</xref> and Data Sheet <xref ref-type="supplementary-material" rid="SM3">S2</xref>). The network in Figure <xref ref-type="fig" rid="F7">7</xref> showed that GO of defense response, cell division, and regulation of flower development were the main disturbed genes by the amidosulfuron treatment on the flower buds transcriptome. Furthermore, we searched the GO terms corresponding to nine major categories (Table <xref ref-type="table" rid="T2">2</xref>) and found the expression of 4, 33, 40, 30, 56, 33, 8, 16, and 11 genes were affected, respectively in amino acid metabolism, energy metabolism, metabolism of carbohydrate, lipid and protein, cell division and death, defense response, chlorophyll and mitochondria, hormone, oxidoreduction, and phenylpropanoid biosynthesis. A gene encoding ethylene-responsive transcription factor RAP2-11-like was up-regulated, meanwhile, a gene in auxin mediated signaling pathway (GO:0009734) was down-regulated. The effect on ethylene mediated signaling pathway was supported by assay of ethylene release rate (Figure <xref ref-type="fig" rid="F3">3F</xref>). Four GO terms belong to protein disulfide isomerase, protein disulfide oxidoreductase activity, protein folding, glycosylation, homodimerization activity were up-regulated. This intimated an occurrence of strong protein modifications due to amidosulfuron application.</p>
<fig id="F7" position="float">
<label>Figure 7</label>
<caption><p>Gene ontology network enriched based on the differentially expressed transcripts. The diagram was produced by BiNGO in Cytoscape software. Yellow color in a node indicated the significant level.</p></caption>
<graphic xlink:href="fpls-08-01625-g0007.tif"/>
</fig>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>GO enrichment for nine important categories.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Category</bold></th>
<th valign="top" align="left"><bold>GO terms<xref ref-type="table-fn" rid="TN1"><sup>&#x0002A;</sup></xref></bold></th>
<th valign="top" align="center"><bold>Up-regulated genes</bold></th>
<th valign="top" align="center"><bold>Down-regulated genes</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Amino acid metabolism</td>
<td valign="top" align="left">GO:0006564; GO:0004813; GO:0006419; GO:0004828; GO:0006434; GO:0004813; GO:0016597</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">1</td>
</tr>
<tr>
<td valign="top" align="left">Energy metabolism</td>
<td valign="top" align="left">GO:0005524; GO:0006754; GO:0003878; GO:0015986; GO:0004022; GO:0008106</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">16</td>
</tr>
<tr>
<td valign="top" align="left">Carbohydrate, lipid, protein metabolism</td>
<td valign="top" align="left">GO:0019252; GO:0005529; GO:0003978; GO:0008289; GO:0016042; GO:0006629; GO:0006869; GO:0005515; GO:0046983; GO:0003756; GO:0015035; GO:0006457; GO:0006486; GO:0042803; GO:0004672; GO:0019901; GO:0004674; GO:0015031; GO:0006508; GO:0004185; GO:0004252</td>
<td valign="top" align="center">7</td>
<td valign="top" align="center">33</td>
</tr>
<tr>
<td valign="top" align="left">Cell division, growth, and death</td>
<td valign="top" align="left">GO: 0048443; GO: 0006075; GO: 0010228; GO: 0030307; GO: 0045793; GO: 0045740; GO: 0009911; GO: 0048366; GO: 0000082; GO: 0051026; GO: 0007050; GO: 0008219; GO: 0051301; GO: 0045454; GO: 0005618; GO: 0052325; GO: 0007047; GO: 0051276; GO: 0000775; GO: 0008360; GO: 0045995; GO: 0040020; GO: 0006914; GO: 0006915</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">28</td>
</tr>
<tr>
<td valign="top" align="left">Stimulus and defense response</td>
<td valign="top" align="left">GO: 0009627; GO: 0019137; GO: 0071475; GO: 0043623; GO: 0071215; GO: 0070301; GO: 0034599; GO: 0016036; GO: 0042631; GO: 0006952; GO: 0042742; GO: 0050832; GO: 0009737; GO: 0009733; GO: 0009617; GO: 0080021; GO: 0009607; GO: 0046686; GO: 0010200; GO: 0009409; GO: 0046898; GO: 0034976; GO: 0010332; GO: 0009408; GO: 0042542; GO: 0080167; GO: 0009416; GO: 0009624; GO: 0010167; GO: 0006979; GO: 0010193; GO: 0000302; GO: 0009751; GO: 0009651; GO: 0006950; GO: 0009636; GO: 0009414; GO: 0010043</td>
<td valign="top" align="center">14</td>
<td valign="top" align="center">42</td>
</tr>
<tr>
<td valign="top" align="left">Chlorophyll and mitochondria</td>
<td valign="top" align="left">GO: 0015979; GO: 0015995; GO: 0009507; GO: 0009941; GO: 0009570; GO: 0009543; GO: 0009535; GO: 0005743; GO: 0005759; GO: 0005746; GO: 0005739</td>
<td valign="top" align="center">15</td>
<td valign="top" align="center">18</td>
</tr>
<tr>
<td valign="top" align="left">Hormone</td>
<td valign="top" align="left">GO: 0009873; GO: 0009734; GO: 0009867; GO: 0080024; GO: 0080032; GO: 0080031; GO: 0009697</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">5</td>
</tr>
<tr>
<td valign="top" align="left">Oxidoreductase</td>
<td valign="top" align="left">GO: 0016491; GO: 0016705; GO: 0016706; GO: 0016717; GO: 0016702; GO: 0019825; GO: 0009654; GO: 0015671; GO: 0004601; GO: 0005782</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">13</td>
</tr>
<tr>
<td valign="top" align="left">Phenylpropanoid biosynthesis</td>
<td valign="top" align="left">GO: 0043481; GO: 0016117; GO: 0047763; GO: 0042409; GO: 0051555; GO: 0045431; GO: 003379; GO: 0045486</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">11</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TN1">
<label>&#x0002A;</label>
<p><italic>The details of GO terms can be find in Gene Ontology Consortium (<ext-link ext-link-type="uri" xlink:href="http://www.geneontology.org/">http://www.geneontology.org/</ext-link>)</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
<p>Surprisingly, the pathway of BCAAs synthesis by ALS enzyme showed no obvious change. Otherwise, a few of amino acid metabolic processes were affected by the treatment, but at a lower stringency level. Four GOs including alanine-tRNA ligase activity (GO:0004813), serine-tRNA ligase activity (GO:0004828), alanyl-tRNA aminoacylation (GO:0006419), and seryl-tRNA aminoacylation (GO:0006434) were up-regulated but serine biosynthesis (GO:0006564) was down-regulated. This was similar to the results of another study (Das et al., <xref ref-type="bibr" rid="B5">2010</xref>) that except threonine ammonia lyase and six genes related to other amino acid biosynthesis, the expression of most genes related to the BCCA group was not changed.</p>
<p>We further showed the possible protein-protein interactions among the DETs by a network (Figure <xref ref-type="fig" rid="F8">8</xref>) produced by STRING. It was showed that some proteins may play important roles in this regulation network, in which glucan endo-1,3-beta-glucosidase A6 (MEE48), fasciclin-like arabinogalactan protein 20 (FLA20), oligopeptide transporter OPT9, caffeoyl-CoA 3-O-methyltransferase (TSM1), cyclin-SDS, ATP-dependent DNA helicase homolog HFM1 (RCK), DNA mismatch repair protein MSH7, putative recombination initiation defects PAIR1 (PRD3), and putative cyclin B3-1 (CycB3;1) were involved in meiosis and formation of pollen cell wall. Some other important genes that were up-regulated in the network encode several EMB (embryogenesis) family proteins, ribosomal proteins, serine-tRNA ligase At5g27470, mitochondrial protease homolog LON1, putative Do-like protease DEG14 and DEG10, and NUC-L1 that involved in pre-rRNA processing and ribosome assembly.</p>
<fig id="F8" position="float">
<label>Figure 8</label>
<caption><p>All known and predicted protein-protein interactions based on STRING analysis of Arabidopsis genes homologous to the differentially expressed transcripts. <bold>(A)</bold> Interactions among the up-regulated genes. <bold>(B)</bold> Interactions among the down-regulated genes. The symbols and names of all proteins/genes were listed in Data Sheet <xref ref-type="supplementary-material" rid="SM2">S1</xref>.</p></caption>
<graphic xlink:href="fpls-08-01625-g0008.tif"/>
</fig>
<p>There were 32 KEGG biological pathways (Table <xref ref-type="table" rid="T3">3</xref>) affected by the treatment, mainly including aminoacyl-tRNA biosynthesis, amino acid metabolism, cytochrome P450 mediated drug metabolism, benzoate degradation via CoA ligation, purine and pyrimidine metabolism, RNA polymerase, fatty acid metabolism, porphyrin and chlorophyll metabolism, photosynthesis, glycolysis/gluconeogenesis, oxidative phosphorylation, citrate cycle, CO<sub>2</sub> fixation, and biosynthesis of secondary metabolites (steroid, terpenoid, ubiquinone, and so on). The results showed that the expression of most DETs in cell division and growth, energy metabolite, and flavonoid biosynthesis were inhibited. The altered expression of genes related to chlorophyll, chloroplast, and mitochondria indicated the abnormal development in chloroplast and mitochondria, in line with our cytological observation.</p>
<table-wrap position="float" id="T3">
<label>Table 3</label>
<caption><p>KEGG biological pathways altered by amidosulfuron treatment.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Pathway ID</bold></th>
<th valign="top" align="left"><bold>Description</bold></th>
<th valign="top" align="center"><bold>Significant gene</bold></th>
<th valign="top" align="center"><bold>Tested gene</bold></th>
<th valign="top" align="center"><bold><italic>P</italic>-value</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">00970</td>
<td valign="top" align="left">Aminoacyl-tRNA biosynthesis</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">158</td>
<td valign="top" align="center">0.0021</td>
</tr>
<tr>
<td valign="top" align="left">00903</td>
<td valign="top" align="left">Limonene and pinene degradation</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">96</td>
<td valign="top" align="center">0.0046</td>
</tr>
<tr>
<td valign="top" align="left">00720</td>
<td valign="top" align="left">Reductive carboxylate cycle (CO<sub>2</sub>) fixation</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">48</td>
<td valign="top" align="center">0.0128</td>
</tr>
<tr>
<td valign="top" align="left">00230</td>
<td valign="top" align="left">Purine metabolism</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">292</td>
<td valign="top" align="center">0.0178</td>
</tr>
<tr>
<td valign="top" align="left">00626</td>
<td valign="top" align="left">Naphthalene and anthracene degradation</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">62</td>
<td valign="top" align="center">0.0205</td>
</tr>
<tr>
<td valign="top" align="left">00361</td>
<td valign="top" align="left">gamma-Hexachlorocyclohexane degradation</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">66</td>
<td valign="top" align="center">0.0230</td>
</tr>
<tr>
<td valign="top" align="left">00945</td>
<td valign="top" align="left">Stilbenoid, diarylheptanoid, and gingerol biosynthesis</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">72</td>
<td valign="top" align="center">0.0269</td>
</tr>
<tr>
<td valign="top" align="left">03020</td>
<td valign="top" align="left">RNA polymerase</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">73</td>
<td valign="top" align="center">0.0276</td>
</tr>
<tr>
<td valign="top" align="left">04623</td>
<td valign="top" align="left">Cytosolic DNA-sensing pathway</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">8</td>
<td valign="top" align="center">0.0309</td>
</tr>
<tr>
<td valign="top" align="left">00240</td>
<td valign="top" align="left">Pyrimidine metabolism</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">218</td>
<td valign="top" align="center">0.0399</td>
</tr>
<tr>
<td valign="top" align="left">00624</td>
<td valign="top" align="left">1- and 2-Methylnaphthalene degradation</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">14</td>
<td valign="top" align="center">0.0510</td>
</tr>
<tr>
<td valign="top" align="left">00980</td>
<td valign="top" align="left">Metabolism of xenobiotics by cytochrome P450</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">0.0609</td>
</tr>
<tr>
<td valign="top" align="left">01053</td>
<td valign="top" align="left">Biosynthesis of siderophore group nonribosomal peptides</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">0.0609</td>
</tr>
<tr>
<td valign="top" align="left">00982</td>
<td valign="top" align="left">Drug metabolism&#x02014;cytochrome P450</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">19</td>
<td valign="top" align="center">0.0675</td>
</tr>
<tr>
<td valign="top" align="left">00020</td>
<td valign="top" align="left">Citrate cycle (TCA cycle)</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">145</td>
<td valign="top" align="center">0.0918</td>
</tr>
<tr>
<td valign="top" align="left">00632</td>
<td valign="top" align="left">Benzoate degradation via CoA ligation</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">34</td>
<td valign="top" align="center">0.1152</td>
</tr>
<tr>
<td valign="top" align="left">00100</td>
<td valign="top" align="left">Steroid biosynthesis</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">42</td>
<td valign="top" align="center">0.1396</td>
</tr>
<tr>
<td valign="top" align="left">00410</td>
<td valign="top" align="left">beta-Alanine metabolism</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">51</td>
<td valign="top" align="center">0.1664</td>
</tr>
<tr>
<td valign="top" align="left">01040</td>
<td valign="top" align="left">Biosynthesis of unsaturated fatty acids</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">53</td>
<td valign="top" align="center">0.1722</td>
</tr>
<tr>
<td valign="top" align="left">00900</td>
<td valign="top" align="left">Terpenoid backbone biosynthesis</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">55</td>
<td valign="top" align="center">0.1780</td>
</tr>
<tr>
<td valign="top" align="left">00350</td>
<td valign="top" align="left">Tyrosine metabolism</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">57</td>
<td valign="top" align="center">0.1838</td>
</tr>
<tr>
<td valign="top" align="left">00052</td>
<td valign="top" align="left">Galactose metabolism</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">70</td>
<td valign="top" align="center">0.2203</td>
</tr>
<tr>
<td valign="top" align="left">00071</td>
<td valign="top" align="left">Fatty acid metabolism</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">80</td>
<td valign="top" align="center">0.2473</td>
</tr>
<tr>
<td valign="top" align="left">00130</td>
<td valign="top" align="left">Ubiquinone and other terpenoid-quinone biosynthesis</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">80</td>
<td valign="top" align="center">0.2473</td>
</tr>
<tr>
<td valign="top" align="left">00860</td>
<td valign="top" align="left">Porphyrin and chlorophyll metabolism</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">0.2579</td>
</tr>
<tr>
<td valign="top" align="left">00650</td>
<td valign="top" align="left">Butanoate metabolism</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">88</td>
<td valign="top" align="center">0.2683</td>
</tr>
<tr>
<td valign="top" align="left">00260</td>
<td valign="top" align="left">Glycine, serine, and threonine metabolism</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">120</td>
<td valign="top" align="center">0.3467</td>
</tr>
<tr>
<td valign="top" align="left">00250</td>
<td valign="top" align="left">Alanine, aspartate, and glutamate metabolism</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">120</td>
<td valign="top" align="center">0.3467</td>
</tr>
<tr>
<td valign="top" align="left">00195</td>
<td valign="top" align="left">Photosynthesis</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">133</td>
<td valign="top" align="center">0.3762</td>
</tr>
<tr>
<td valign="top" align="left">00010</td>
<td valign="top" align="left">Glycolysis/Gluconeogenesis</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">190</td>
<td valign="top" align="center">0.4912</td>
</tr>
<tr>
<td valign="top" align="left">00520</td>
<td valign="top" align="left">Amino sugar and nucleotide sugar metabolism</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">208</td>
<td valign="top" align="center">0.5231</td>
</tr>
<tr>
<td valign="top" align="left">00190</td>
<td valign="top" align="left">Oxidative phosphorylation</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">396</td>
<td valign="top" align="center">0.7601</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec>
<title>Expression analysis of <italic>ALS</italic> and other important genes detected by real-time PCR</title>
<p>We found that the expression of <italic>ALS1</italic> and <italic>ALS3</italic>, detected via qRT-PCR, were not affected greatly in the treated plants because the differences among the treatment and control were less than one-fold (Figure <xref ref-type="fig" rid="F9">9</xref>) though significant changes estimated by Student&#x00027;s <italic>t</italic>-test were found in some organs. This suggested that amidosulfuron treatment at gametocidal dose did not greatly disturb the <italic>ALS</italic> expression although the enzyme activity were obviously inhibited as above mentioned. The other 13 interesting DETs, which were showed in Figure <xref ref-type="fig" rid="F6">6</xref>, were also chosen for gene expression analysis. The results showed that, in the small buds (1 mm long), the relative expression levels of all selected DETs were in line with the DGE profiling data, though expression patterns for these genes changed with different size of flower buds and anthers (Figure <xref ref-type="fig" rid="F9">9</xref>). Three genes that encode DNA helicase HFM1, cyclin-SDS-like, and PAIR 1-like (homologous pairing aberration in rice meiosis 1), respectively, which are important for cell cycle control, and three genes that encode glucanase A6, putative cell wall protein LOC106368794, and bifunctional UDP-glucose 4-epimerase/UDP-xylose 4-epimerase (UGE1), which are involved in microspore release from tetrad and cell wall formation, were down-regulated. We also found that <italic>CSTF77</italic> (<italic>cleavage stimulation factor subunit 77</italic>), chloroplastic <italic>PPD2</italic> (<italic>psbP domain-containing protein 2</italic>), <italic>ALA6</italic> (<italic>phospholipid-transporting ATPase 6</italic>), and <italic>FLA20</italic> were depressed in the amidosulfuron treatment. Two tapetum-specific genes <italic>A9</italic> and <italic>bHLH91</italic> were also down-regulated in the small flower buds of the treated plants. Notably, an important gene <italic>ATG8A</italic> encoding autophagy-related protein 8a was up-regulated by amidosulfuron treatment.</p>
<fig id="F9" position="float">
<label>Figure 9</label>
<caption><p>Relative gene expression in the indicated tissues of <italic>ALS</italic> genes and 13 differentially expressed transcripts (<italic>ATG8A, PAIR1, SDS, PPD2, HFM1, CSTF77, A6, ALA6, UGE1, Wall, FLA20, A9</italic>, and <italic>bHLH91</italic>). The y-axes represent the normalized relative gene expression level, which is the &#x02212;2<sup>&#x00394;Ct</sup> value of qRT-PCR compared to the internal control gene <italic>BnActin7</italic>. The details of the 13 selected genes are included in Data Sheet <xref ref-type="supplementary-material" rid="SM2">S1</xref>, highlighted in yellow and written in red colors. The accession numbers for 13 DETs are also in Table <xref ref-type="supplementary-material" rid="SM1">S1</xref>. <sup>&#x0002A;</sup> and <sup>&#x0002A;&#x0002A;</sup> indicate significant difference at confidential level of 0.05 and 0.01 by Student&#x00027;s <italic>t</italic>-test. Error bars represent &#x000B1; one standard deviation (<italic>n</italic> &#x0003D; 3).</p></caption>
<graphic xlink:href="fpls-08-01625-g0009.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<sec>
<title>Destruction of plant photosynthetic system is associated with male sterility induced by ALS-inhibitors</title>
<p>Indubitably, ALS is the direct target of various sulfonylurea herbicides (McCourt et al., <xref ref-type="bibr" rid="B17">2006</xref>; Zhou et al., <xref ref-type="bibr" rid="B47">2007</xref>). In the present study, even trace amount of amidosulfuron can significantly inhibit the ALS activity in rapeseed flower buds. Constitutive or anther-specific expression of ALS mutant <italic>csr1-1D</italic> reversed the male sterile phenotype induced by tribenuron-methyl in both rapeseed and <italic>Arabidopsis</italic> (Zhao et al., <xref ref-type="bibr" rid="B46">2015</xref>). Although, plant ALS are encoded by nuclear genes, their proteins are located in plastid and chloroplast (Shimizu et al., <xref ref-type="bibr" rid="B31">2008</xref>). Sulfonylurea derivatives do not directly inhibit the process of photosynthesis but their activity may impair the efficiency of the photosynthetic apparatus (Saja et al., <xref ref-type="bibr" rid="B27">2016</xref>). We found that the amidosulfuron treatment did not severely affect plant growth but it diminished the photosynthetic rate and chlorophyll content significantly. Tribenuron-methyl and other ALS-inhibiting gametocides had similar effects to amidosulfuron, when a sub-herbicidal dose was used (data not showed). Abnormality of chloroplast and tapetal elaioplast caused by sulfonylurea gametocides was firstly reported in a dissertation (Yu, <xref ref-type="bibr" rid="B40">2009</xref>). Zabalza et al. (<xref ref-type="bibr" rid="B44">2013</xref>) found that carbohydrates accumulated in the leave and roots of pea plants following treatments with both inhibitors of KARI and ALS. Both types of inhibitors induce growth arrest and photosynthesis inhibition (Zabalza et al., <xref ref-type="bibr" rid="B44">2013</xref>). However, they assumed that carbohydrate accumulation in the leaf occurred as a consequence of a decrease in sink strength. In another study, exposure of <italic>A. thaliana</italic> plants to trace concentration of imazethapyr strongly affected chlorophyll synthesis and increased reactive oxygen species (ROS) (Qian et al., <xref ref-type="bibr" rid="B22">2011</xref>, <xref ref-type="bibr" rid="B21">2015</xref>). Short exposure of rice seedlings to imazethapyr induced damages to lipid membranes and negatively affected the transcription of a number of genes involved photosynthesis, starch and sugar metabolism, and the tricarboxylic acid cycle (Qian et al., <xref ref-type="bibr" rid="B22">2011</xref>; Sun et al., <xref ref-type="bibr" rid="B34">2016</xref>). Cheng et al. (<xref ref-type="bibr" rid="B4">2013</xref>) and Li et al. (<xref ref-type="bibr" rid="B14">2015</xref>) also found that, at the vacuolated-microspore stage of MES-treated rapeseed anther, the chloroplasts in the epidermis and endothecium cells exhibited defects. Both amidosulfuron (Figure <xref ref-type="fig" rid="F3">3</xref>) and MES exposure (Li et al., <xref ref-type="bibr" rid="B14">2015</xref>) led to decrease in soluble sugars content in leaf and flower bud, and therefore, it was assumed that carbohydrate metabolism maybe blocked in these treatments. Moreover, the results of Sun et al. (<xref ref-type="bibr" rid="B34">2016</xref>) showed that <italic>A. thaliana</italic> cultivated in a solution containing 20 &#x003BC;g/L imazethapyr produced more anthocyanins and ROS, particularly in the <italic>pgr5</italic> mutant (a defect in the proton gradient regulation 5 pathway). Their results also showed that the PSII was severely damaged and the transcript levels of most photosynthesis-related genes were decreased in the treated plants (Sun et al., <xref ref-type="bibr" rid="B34">2016</xref>).</p>
<p>In summary, destruction of chloroplast and incapability of photosynthesis are two main effects observed in the treatments of sulfonylurea and other ALS-inhibiting gametocides (Qian et al., <xref ref-type="bibr" rid="B22">2011</xref>; Cheng et al., <xref ref-type="bibr" rid="B4">2013</xref>; Li et al., <xref ref-type="bibr" rid="B14">2015</xref>; Saja et al., <xref ref-type="bibr" rid="B27">2016</xref>; Sun et al., <xref ref-type="bibr" rid="B34">2016</xref>). Moreover, the down-regulation of chloroplastic <italic>PPD2</italic> intimated structural and/or functional abnormalities of chloroplast. Thus, we assumed that amidosulfuron will affect the chloroplast and photosynthesis as it enters the plant body. Developing microspores constitute a strong photosynthetic sink and accumulate photoassimilates (De Storme and Geelen, <xref ref-type="bibr" rid="B6">2014</xref>), such as starch and other carbohydrates, and thus the photosynthesis and carbohydrate supply is very crucial for microsporogenesis. Deprivation of the anther sugar content is often considered one of the predominant factors underlying stress-induced male sterility (Reviewed by De Storme and Geelen, <xref ref-type="bibr" rid="B6">2014</xref>). Thus, we assumed that deprivation of photosynthesis and chlorophyll by ALS-inhibitors also contribute to inducing male sterility. However, how ALS-inhibitors affect chloroplast structure and function need further investigation.</p>
</sec>
<sec>
<title>Cytological abnormalities of gametocide-induced male sterility</title>
<p>Tapetum plays crucial roles in microspore development and hence was often affected by various abiotic stresses including some chemicals (Reviewed by De Storme and Geelen, <xref ref-type="bibr" rid="B6">2014</xref>). In benzotriazole and ethrel treated <italic>B. juncea</italic> anthers, tapetum exhibited premature degeneration of mitochondria and plastids (Singh and Chauhan, <xref ref-type="bibr" rid="B33">2007</xref>). It was reported that pollen abortion in benotrazole-treated sunflower was mainly associated with abnormal behavior of tapetum (Tripathi and Singh, <xref ref-type="bibr" rid="B35">2008</xref>). A limited number of anther locule showed early degeneration of tapetum followed by disintegration of sporogenous tissues (Tripathi and Singh, <xref ref-type="bibr" rid="B35">2008</xref>). This phenomenon was similar to the results of Cheng et al. (<xref ref-type="bibr" rid="B4">2013</xref>), Li et al. (<xref ref-type="bibr" rid="B14">2015</xref>), and the present study. Zhao et al. (<xref ref-type="bibr" rid="B46">2015</xref>) revealed that autophagy was elevated in rapeseed anther by both tribenuron-methyl treatment and anther-specific knockdown of <italic>ALS</italic>. We also found that tissue autophagy occurred at the early stage of microsporogenesis in the anther of amidosulfuron treated plants. Taken together, these results suggested that tapetum development and function were affected by various gametocides.</p>
<p>Callose wall formation and dissolution is a unique feature of male meiosis in plants during and after meiotic division (Zhang et al., <xref ref-type="bibr" rid="B45">2007</xref>). The wall covering PMC and tetrad microspore is composed mainly of &#x003B2;-1, 3-glucans, and pectin. &#x003B2;-1,3-glucanase is the main enzyme responsible for callose wall degradation and release individual microspores at the end of meiosis. Recent research has suggested that the expression of <italic>glucan endo-1, 3-beta-glucosidase A6</italic> was tapetal specific and necessary for <italic>Arabidopsis</italic> pollen development (Zhang et al., <xref ref-type="bibr" rid="B45">2007</xref>). The down-regulation of tapetum marker gene <italic>glucanase A6</italic> in the amidosulfuron treated plant suggested that the callose layer covering PMC and tetrad microspores should be affected. Down-regulation of the other genes involved in cell wall formation (Figure <xref ref-type="fig" rid="F6">6</xref>) also implied the abnormalities on pollen wall construction.</p>
</sec>
<sec>
<title>Change of free amino acid metabolism</title>
<p>Some early studies about mode of action for ALS-inhibiting herbicides focused on the influences on BCAAs synthesis or protein metabolism (Ray, <xref ref-type="bibr" rid="B23">1984</xref>). BCAAs starvation was thought to be responsible for the phytotoxic effect. Zhao et al. (<xref ref-type="bibr" rid="B46">2015</xref>) also reported more tribenuron-methyl accumulation and subsequent stronger ALS inhibition and BCAAs starvation in anther than in leaf and stem. However, other researches elicited some conflicts with the hypothesis deduced by the earlier studies (Zhou et al., <xref ref-type="bibr" rid="B47">2007</xref>). Valine and isoleucine were ineffective in preventing the damage induced by chlorsulfuron on the plasma membrane of maize roots (Giardina et al., <xref ref-type="bibr" rid="B11">1987</xref>). In addition, growth inhibition in seedlings of corn and pea due to chlorsulfuron treatment was not alleviated by valine and isoleucine (Giardina et al., <xref ref-type="bibr" rid="B11">1987</xref>). Shaner and Singh (<xref ref-type="bibr" rid="B29">1993</xref>) found that application of ALS inhibitor imazaquin, KARI inhibitors Hoe704 in maize led to an increase of total free-amino acid. Leucine was also rising while the isoleucine, valine, and 2-aminobutyric acid (amino acid formation of ALS substrate butanone) dropped. H&#x000F6;fgen et al. (<xref ref-type="bibr" rid="B13">1995</xref>) reported that in transgenic potato with antisense <italic>ALS</italic> gene, total free amino acid and content of BCAAs increase significantly. Increase of total free amino acids after sulfonylurea treatments was also reported in some other studies (Royuela et al., <xref ref-type="bibr" rid="B26">2000</xref>; Shim et al., <xref ref-type="bibr" rid="B30">2003</xref>). Once again, our present results suggested that among three BCAAs, only valine content dropped but isoleucine and leucine rose (Figure <xref ref-type="fig" rid="F4">4</xref>). It is possible that the amidosulfuron treatment led to an increase of protein turn-over (disintegrated protein become amino acid again), and hence more amino acids were released into free amino acid pool (Royuela et al., <xref ref-type="bibr" rid="B26">2000</xref>). Thus, the amidosulfuron treatment did not significantly deprive BCAAs as other herbicide did in the previous study (Ray, <xref ref-type="bibr" rid="B23">1984</xref>), but change the component proportions of free amino acid pool. This would implicate a systematical sexual dysfunction caused by amino acid imbalance.</p>
<p>Surprisingly, the expression of <italic>ALS</italic> and it&#x00027;s relatives did not greatly changed but hundreds of non-target-site transcripts were altered by the amidosulfuron treatment, consistent with the literatures about other ALS-inhibiting herbicides (Das et al., <xref ref-type="bibr" rid="B5">2010</xref>; Do&#x0011F;ramac&#x00131; et al., <xref ref-type="bibr" rid="B8">2015</xref>; Duhoux et al., <xref ref-type="bibr" rid="B9">2015</xref>; Li et al., <xref ref-type="bibr" rid="B14">2015</xref>). We assumed that protein turn-over and imbalance of free amino acid pool might offset the minor shortage of BCAAs. Thus, we could again draw a conclusion that BCAAs starvation maybe not the main reason for stamen abortion induced by gametocide amidosulfuron.</p>
</sec>
<sec>
<title>Ethylene releasing indicated cell cyclemaybe inhibited by amidosulfuron exposure</title>
<p>As a major plant hormone, ethylene regulates some biological pathways related to flower senescence and cell death (Rogers, <xref ref-type="bibr" rid="B24">2013</xref>). Application of imazameth, metsulfuronmethyl, or prosulfuron on citrus fruit increased the levels of internal ethylene (Burns et al., <xref ref-type="bibr" rid="B1">1999</xref>). Ethylene release rate in the flower bud samples after amidosulfuron treatment increased significantly on 3 and 5 DAT (Figure <xref ref-type="fig" rid="F3">3F</xref>). A gene encoding ethylene-responsive transcription factor RAP2-11-like was also up-regulated. The results showed that amidosulfuron treatment in rapeseed had obvious eliciting effect on the synthesis of endogenous ethylene. Ethylene is commonly associated with cell death, restricting cell elongation and regulation of cell division (Rogers, <xref ref-type="bibr" rid="B24">2013</xref>). Some previous evidences suggested that valine, leucine and isoleucine may be involved in the regulation of cell division (Rost et al., <xref ref-type="bibr" rid="B25">1990</xref>) and sulfonylurea herbicides disturbed cell division in the meristematic tissues of plants (Saja et al., <xref ref-type="bibr" rid="B27">2016</xref>). We also found that amidosulfuron can restrain the raceme elongation (cell growth) in the first days after treatment and the pollen development was terminated before microspore mitosis (the flower bud length of 3&#x02013;3.5 mm), as various sulfonylurea herbicides did in different cultivars (Yu et al., <xref ref-type="bibr" rid="B38">2006</xref>, <xref ref-type="bibr" rid="B41">2009</xref>, <xref ref-type="bibr" rid="B42">2017</xref>; Yu and He, <xref ref-type="bibr" rid="B37">2014</xref>; Li et al., <xref ref-type="bibr" rid="B14">2015</xref>). The increase of endogenous ethylene in the treated plants may cause frustration on plant growth and development including cell cycle.</p>
</sec>
<sec>
<title>Transcriptomic response to amidosulfuron exposure</title>
<p>The toxicity of ALS-inhibiting herbicide on plant reproduction is seldom investigated until recent year (Yu et al., <xref ref-type="bibr" rid="B38">2006</xref>, <xref ref-type="bibr" rid="B41">2009</xref>; Li et al., <xref ref-type="bibr" rid="B14">2015</xref>; Qian et al., <xref ref-type="bibr" rid="B21">2015</xref>). There is increasing evidence that plant reproduction is a more sensitive endpoint than classical short-term physiological measurements of herbicide toxicity (Qian et al., <xref ref-type="bibr" rid="B21">2015</xref>). Although, the target of sulfonylurea herbicides is ALS, their biological effects on microbes and plants are quite different. Microspore development rely on the coordination of thousands of genes and metabolism pathways. Thus, exposure to the male gametocide may also affect the expression of hundreds of genes. For example, Zhu et al. (<xref ref-type="bibr" rid="B48">2015</xref>) found that the 1,088 DETs in wheat anther transcriptome, treated with a gametocide SQ-1, were mainly involved in ribosomes, photosynthesis, respiration, purine and pyrimidine metabolism, amino acid metabolism, glutathione metabolism, RNA transport, ROS, protein processing, and ubiquitin-mediated proteolysis. It was also found that many effects of ALS inhibiting herbicides related to ribosome biogenesis, secondary metabolism, cell wall modification, and cell growth (Das et al., <xref ref-type="bibr" rid="B5">2010</xref>). What&#x00027;s more, imazethapyr treated <italic>Arabidopsis</italic> showed induction of detoxification genes at early time points but induction of the genes related to amino acid biosynthesis, secondary metabolites, and tRNAs at a later stage (Manabe et al., <xref ref-type="bibr" rid="B16">2007</xref>).</p>
<p>Similarly, we found that expression of some detoxification and defense-related genes, for example, drug metabolism by cytochrome P450, were also induced. The genes in such pathways as aminoacyl-tRNA biosynthesis and porphyrin and chlorophyll metabolism were up-regulated in the amidosulfuron treated plants (Table <xref ref-type="table" rid="T2">2</xref>), and this may a reaction to compensate the loss of amino acids and chlorophyll. Other genes of photosynthesis and oxidative phosphorylation, metabolism of several amino acids, CO<sub>2</sub> fixation, citrate cycle, fatty acid metabolism, glycolysis/gluconeogenesis, and amino sugar and nucleotide sugar metabolism were down-regulated. Similar to the results of our present study, amino acid metabolism, citrate cycle, photosynthesis, and metabolism of starch and sugar were altered in imazethapyr-treated rice (Qian et al., <xref ref-type="bibr" rid="B22">2011</xref>). Moreover, Li et al. (<xref ref-type="bibr" rid="B14">2015</xref>) suggested that some transcripts related to carbohydrate metabolism, plastid structure and flavonoid synthesis, were significant affected by MES. They assumed that the constraints of carbohydrate and lipid metabolism along with energy deficiency and perturbed network regulation in the development anthers might be the main reason for male sterility induced by MES treatment (Li et al., <xref ref-type="bibr" rid="B14">2015</xref>). Based on the results of our present study, the abnormal regulation of 13 interesting DETs validated via qRT-PCR (Figure <xref ref-type="fig" rid="F9">9</xref>) indicated functional abnormalities about cell cycle, cell wall structure, tissue autophagy, and photosynthesis. The down-regulation of <italic>HFM1, SDS</italic>, and <italic>PAIR1</italic> intimated a halt of cell cycle (presented by raceme elongation and possible microspore mitosis). The down-regulation of genes encoding glucanase A6, putative cell wall protein LOC106368794, and UGE1 suggested functional abnormalities about microspore release from tetrad and cell wall formation by protein and polysaccharide. Down-regulation of chloroplastic <italic>PPD2</italic> and up-regulation of <italic>ATG8A</italic> supported the observation of sulfonylurea herbicides destructed chloroplast thylakoid and delivery of the autophagosomes to the vacuole, respectively. ATG8 is a key protein involved in autophagosome formation and can be used as a marker for autophagosomes when fused with a fluorescent protein (Pu et al., <xref ref-type="bibr" rid="B20">2017</xref>). <italic>CSTF77</italic> is one of the multiple factors required for polyadenylation and 3&#x02032;-end cleavage of pre-mRNAs (Liu et al., <xref ref-type="bibr" rid="B15">2010</xref>) and down-regulation of it might affect the process of gene silence. In addition, <italic>ALA6</italic> was involved in transport of phospholipids (McDowell et al., <xref ref-type="bibr" rid="B18">2015</xref>) and hence down-regulation of it might affect the regulation of pollen plasma membrane lipid asymmetry. The down-regulation of <italic>FLA20</italic>, which encodes an important arabinoglactan protein, suggested that pollen wall structure maybe affected by the amidosulfuron treatment.</p>
<p>However, there were also some DETs in our results different from other studies. This difference could be raised by three reasons: different transcriptomic assay methods (microarray hybridizing vs. RNA-seq), different cultivars and tissue samples, and most importantly, different chemical structures. The genes responses toward two structurally related herbicides (primisulfuron-methyl and sulfometuron-methyl) on gene transcription could be differentiated (Duhoux et al., <xref ref-type="bibr" rid="B9">2015</xref>). The expression patterns of a set of 101 genes in <italic>A. thaliana</italic> and <italic>B. napus</italic> were also differentiated among various herbicides of sulfonylurea family or other ALS-inhibitors (Das et al., <xref ref-type="bibr" rid="B5">2010</xref>).</p>
</sec>
<sec>
<title>Mode of action for gametocide amidosulfuron</title>
<p>In our present paper, the gametocide amidosulfuron showed multi-effects on rapeseed in the first several days after the treatment. These evidences showed that severe destruction of rapeseed photosynthesis system and abnormal regulation of cell cycle related genes, and induction of autophagy in anther cells were associated with the CIMS. Although the relationships among ALS protein function and photosynthesis system and cell cycle are not known, the available data in our studies and previous literatures (Rost et al., <xref ref-type="bibr" rid="B25">1990</xref>; Qian et al., <xref ref-type="bibr" rid="B22">2011</xref>; Cheng et al., <xref ref-type="bibr" rid="B4">2013</xref>; Li et al., <xref ref-type="bibr" rid="B14">2015</xref>; Saja et al., <xref ref-type="bibr" rid="B27">2016</xref>; Sun et al., <xref ref-type="bibr" rid="B34">2016</xref>) suggested that disruption of photosynthesis and inhibition of cell cycle are two major phytotoxic effects of amidosulfuron. Down-regulation of some genes about carbohydrate metabolism and sugar transporter also intimated a possible disruption of photoassimilate translocation. The other hypothesis including BCAAs starvation and substrates accumulation could be excluded, as the previous studies (Giardina et al., <xref ref-type="bibr" rid="B11">1987</xref>; Shaner and Singh, <xref ref-type="bibr" rid="B29">1993</xref>; H&#x000F6;fgen et al., <xref ref-type="bibr" rid="B13">1995</xref>; Royuela et al., <xref ref-type="bibr" rid="B26">2000</xref>; Shim et al., <xref ref-type="bibr" rid="B30">2003</xref>).</p>
<p>Based on the results in the present paper and previous literatures, a primary model of action for gametocide amidosulfuron can be built (Figure <xref ref-type="fig" rid="F10">10</xref>) as explained below. Firstly, gametocide amidosulfuron (or other sulfonylurea chemicals) inhibits the activity of the target ALS enzyme. Subsequently, its toxicity will embody multi-level alterations: (1) destruction of plastid and chloroplasts and consequent restriction of the photosynthesis and energy supply, (2) ethylene mediated signal and abnormal cell division and development, (3) imbalance of amino acids, decline of protein biosynthesis, and arrest of DNA duplication and RNA transcription, (4) reduction of lipid and flavonoid synthesis, resulting poor structure of exine, and pollen coat. Especially, these alterations make the tapetum dysfunctional and will not supply the nutrients and components necessary for microspore development. Finally, the microsporogenesis process sensitive to these alterations is suppressed and male sterility happens. However, the detailed linkages among these traits and transcriptional regulation need further studies.</p>
<fig id="F10" position="float">
<label>Figure 10</label>
<caption><p>Scheme of mode of action for gametocide amidosulfuron. Inhibition of ALS activity disturbs amino acid metabolism directly and destructs plastid and chloroplast indirectly. Then the treatment affects the expression of some tapetum preferential genes and synthesis of lipid, flavonoid, and pollen coat materials. Consequently, photosynthesis, energy and nutrition supply, cell division and development, and protein metabolism are all influenced by the treatment.</p></caption>
<graphic xlink:href="fpls-08-01625-g0010.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="conclusions" id="s5">
<title>Conclusion</title>
<p>The results of this study indicated that the male sterility in amidosulfuron treated rapeseed plants may be associated with the defective plastids and impaired photosynthesis at early development stage even if we do not clearly understand the mechanism how an ALS inhibitor destruct plastids and reduce photosynthesis. The aberrant transcriptional regulation of some important genes may disrupt the coordination of development and metabolism and result in dysfunction of tapetal cells and defect of microspores. This combined cytological, transcriptomic, and physiological investigation showed a multi-level mode of action of chemical induced male sterility. This mode for gametocidal effect will also be useful to interpret the herbicidal mechanism of sulfonylurea chemicals.</p>
</sec>
<sec id="s6">
<title>Author contributions</title>
<p>Conceived and designed the experiments: CY. Performed the experiments: XL, CY, and JD. Performed the bioinformatics analysis: CY. Contributed materials and analyzed the results: JD, SH, and AX. Wrote the paper: CY. All authors read and approved the final manuscript.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<ack>
<p>The authors gratefully thank Mr. Zhiyuan Huang in LC-Bio, Hangzhou, China, for his assistance with data analysis.</p>
</ack>
<sec sec-type="supplementary-material" id="s7">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="http://journal.frontiersin.org/article/10.3389/fpls.2017.01625/full#supplementary-material">http://journal.frontiersin.org/article/10.3389/fpls.2017.01625/full#supplementary-material</ext-link></p>
<sec>
<title>Availability of supporting data</title>
<p>The dataset supporting the results of this article is available in NCBI&#x00027;s Gene Expression Omnibus under accession <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="GSE69679">GSE69679</ext-link> and Transcriptome Shotgun Assembly accession <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="GDFQ00000000">GDFQ00000000</ext-link>. Other supporting data are included within the article and its additional files.</p>
<supplementary-material xlink:href="Table1.DOC" id="SM1" mimetype="application/msword" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Table S1</label>
<caption><p>Primers for <italic>ALS</italic> genes and 13 selected differentially expressed transcripts.</p></caption></supplementary-material>
<supplementary-material xlink:href="DataSheet1.XLS" id="SM2" mimetype="application/vnd.ms-excel" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Data Sheet S1</label>
<caption><p>The differentially expressed transcripts (DETs) between amidosulfuron-treatment and the control. All up-regulated and down-regulated DETs in amidosulfuron-treatment were listed. The DETs were selected with FDR &#x0003C;0.05 and fold change &#x02265;2. The gene name and symbol, RPKM value, fold change, <italic>p</italic>-value, gene sequence, GO term, KEGG pathway, BLAST hit in NCBI database, and functional annotation in Uniprot database were included. Fold change is calculated as Log<sub>2</sub> of ratio (Mean_RPKM_DAT/Mean_RPKM_F).</p></caption></supplementary-material>
<supplementary-material xlink:href="DataSheet2.XLS" id="SM3" mimetype="application/vnd.ms-excel" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Data Sheet S2</label>
<caption><p>GO terms corresponding to differentially expressed transcripts.</p></caption></supplementary-material>
</sec>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Burns</surname> <given-names>J. K.</given-names></name> <name><surname>Hartmond</surname> <given-names>U.</given-names></name> <name><surname>Kender</surname> <given-names>W. J.</given-names></name></person-group> (<year>1999</year>). <article-title>Acetolactate synthase inhibitors increase ethylene production and cause fruit drop in citrus</article-title>. <source>Hortscience</source> <volume>34</volume>, <fpage>908</fpage>&#x02013;<lpage>910</lpage>.</citation></ref>
<ref id="B2">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chakrabarty</surname> <given-names>S. K.</given-names></name> <name><surname>Maity</surname> <given-names>A.</given-names></name> <name><surname>Yadav</surname> <given-names>J. B.</given-names></name></person-group> (<year>2015</year>). <article-title>Influence of cyto-sterility sources of female line on seed quality of Indian mustard (<italic>Brassica juncea</italic> L. <italic>Czern &#x00026; Coss</italic>.) in relation to storage period</article-title>. <source>Plant Breed</source>. <volume>134</volume>, <fpage>333</fpage>&#x02013;<lpage>337</lpage>. <pub-id pub-id-type="doi">10.1111/pbr.12267</pub-id></citation></ref>
<ref id="B3">
<citation citation-type="book"><person-group person-group-type="author"><name><surname>Chen</surname> <given-names>Y. Q.</given-names></name></person-group> (<year>2002</year>). <source>Methods and Technology of Biochemistry Experiment</source>. <publisher-loc>Beijing</publisher-loc>: <publisher-name>Science Press</publisher-name>.</citation></ref>
<ref id="B4">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cheng</surname> <given-names>Y.</given-names></name> <name><surname>Wang</surname> <given-names>Q.</given-names></name> <name><surname>Li</surname> <given-names>Z.</given-names></name> <name><surname>Cui</surname> <given-names>J.</given-names></name> <name><surname>Hu</surname> <given-names>S.</given-names></name> <name><surname>Zhao</surname> <given-names>H.</given-names></name> <etal/></person-group>. (<year>2013</year>). <article-title>Cytological and comparative proteomic analyses on male sterility in <italic>Brassica napus</italic> L. induced by the chemical hybridization agent monosulphuron ester sodium</article-title>. <source>PLoS ONE</source> <volume>8</volume>:<fpage>e80191</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0080191</pub-id><pub-id pub-id-type="pmid">24244648</pub-id></citation></ref>
<ref id="B5">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Das</surname> <given-names>M.</given-names></name> <name><surname>Reichman</surname> <given-names>J. R.</given-names></name> <name><surname>Haberer</surname> <given-names>G.</given-names></name> <name><surname>Welzl</surname> <given-names>G.</given-names></name> <name><surname>Aceituno</surname> <given-names>F. F.</given-names></name> <name><surname>Mader</surname> <given-names>M. T.</given-names></name> <etal/></person-group>. (<year>2010</year>). <article-title>A composite transcriptional signature differentiates responses towards closely related herbicides in <italic>Arabidopsis thaliana</italic> and <italic>Brassica napus</italic></article-title>. <source>Plant Mol. Biol.</source> <volume>72</volume>, <fpage>545</fpage>&#x02013;<lpage>556</lpage>. <pub-id pub-id-type="doi">10.1007/s11103-009-9590-y</pub-id><pub-id pub-id-type="pmid">20043233</pub-id></citation></ref>
<ref id="B6">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>De Storme</surname> <given-names>N.</given-names></name> <name><surname>Geelen</surname> <given-names>D.</given-names></name></person-group> (<year>2014</year>). <article-title>The impact of environmental stress on male reproductive development in plants: biological processes and molecular mechanisms</article-title>. <source>Plant Cell Environ.</source> <volume>37</volume>, <fpage>1</fpage>&#x02013;<lpage>18</lpage>. <pub-id pub-id-type="doi">10.1111/pce.12142</pub-id><pub-id pub-id-type="pmid">23731015</pub-id></citation></ref>
<ref id="B7">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dey</surname> <given-names>S. S.</given-names></name> <name><surname>Bhatia</surname> <given-names>R.</given-names></name> <name><surname>Parkash</surname> <given-names>C.</given-names></name> <name><surname>Sharma</surname> <given-names>S.</given-names></name> <name><surname>Dabral</surname> <given-names>M.</given-names></name> <name><surname>Mishra</surname> <given-names>V.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>Alteration in important quality traits and antioxidant activities in <italic>Brassica oleracea</italic> with Ogura cybrid cytoplasm</article-title>. <source>Plant Breed.</source> <volume>136</volume>, <fpage>400</fpage>&#x02013;<lpage>409</lpage>. <pub-id pub-id-type="doi">10.1111/pbr.12478</pub-id></citation></ref>
<ref id="B8">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Do&#x0011F;ramac&#x00131;</surname> <given-names>M.</given-names></name> <name><surname>Foley</surname> <given-names>M. E.</given-names></name> <name><surname>Horvath</surname> <given-names>D. P.</given-names></name> <name><surname>Hernandez</surname> <given-names>A. G.</given-names></name> <name><surname>Khetani</surname> <given-names>R. S.</given-names></name> <name><surname>Fields</surname> <given-names>C. J.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Glyphosate&#x00027;s impact on vegetative growth in leafy spurge identifies molecular processes and hormone cross-talk associated with increased branching</article-title>. <source>BMC Genomics</source> <volume>16</volume>:<fpage>395</fpage>. <pub-id pub-id-type="doi">10.1186/s12864-015-1627-9</pub-id><pub-id pub-id-type="pmid">25986459</pub-id></citation></ref>
<ref id="B9">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Duhoux</surname> <given-names>A.</given-names></name> <name><surname>Carr&#x000E8;re</surname> <given-names>S.</given-names></name> <name><surname>Gouzy</surname> <given-names>J.</given-names></name> <name><surname>Bonin</surname> <given-names>L.</given-names></name> <name><surname>D&#x000E9;lye</surname> <given-names>C.</given-names></name></person-group> (<year>2015</year>). <article-title>RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance</article-title>. <source>Plant Mol. Biol.</source> <volume>87</volume>, <fpage>473</fpage>&#x02013;<lpage>487</lpage>. <pub-id pub-id-type="doi">10.1007/s11103-015-0292-3</pub-id><pub-id pub-id-type="pmid">25636204</pub-id></citation></ref>
<ref id="B10">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gerwick</surname> <given-names>B. C.</given-names></name> <name><surname>Mireles</surname> <given-names>L. C.</given-names></name> <name><surname>Eilers</surname> <given-names>R. J.</given-names></name></person-group> (<year>1993</year>). <article-title>Rapid diagnosis of ALS/AHAS-resistant weeds</article-title>. <source>Weed Technol.</source> <volume>7</volume>, <fpage>519</fpage>&#x02013;<lpage>524</lpage>.</citation></ref>
<ref id="B11">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Giardina</surname> <given-names>M. C.</given-names></name> <name><surname>De Agazio</surname> <given-names>M.</given-names></name> <name><surname>Grego</surname> <given-names>S.</given-names></name></person-group> (<year>1987</year>). <article-title>Lack of prevention of chlorsulfuron-induced inhibition by amino acids</article-title>. <source>Weed Res.</source> <volume>27</volume>, <fpage>215</fpage>&#x02013;<lpage>219</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-3180.1987.tb00756.x</pub-id></citation></ref>
<ref id="B12">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Glombitza</surname> <given-names>S.</given-names></name> <name><surname>Dubuis</surname> <given-names>P. H.</given-names></name> <name><surname>Thulke</surname> <given-names>O.</given-names></name> <name><surname>Welzl</surname> <given-names>G.</given-names></name> <name><surname>Bovet</surname> <given-names>L.</given-names></name> <name><surname>G&#x000F6;tz</surname> <given-names>M.</given-names></name> <etal/></person-group>. (<year>2004</year>). <article-title>Crosstalk and differential response to abiotic and biotic stressors reflected at the transcriptional level of effector genes from secondary metabolism</article-title>. <source>Plant Mol. Biol.</source> <volume>54</volume>, <fpage>817</fpage>&#x02013;<lpage>835</lpage>. <pub-id pub-id-type="doi">10.1007/s11103-004-0274-3</pub-id><pub-id pub-id-type="pmid">15604654</pub-id></citation></ref>
<ref id="B13">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>H&#x000F6;fgen</surname> <given-names>R.</given-names></name> <name><surname>Laber</surname> <given-names>B.</given-names></name> <name><surname>Sch&#x000FC;ttke</surname> <given-names>I.</given-names></name> <name><surname>Klonus</surname> <given-names>A. K.</given-names></name> <name><surname>Streber</surname> <given-names>W.</given-names></name> <name><surname>Pohlenz</surname> <given-names>H. D.</given-names></name></person-group> (<year>1995</year>). <article-title>Repression of acetolactate synthase activity through antisense inhibition. Molecular and biochemical analysis of transgenic potato (<italic>Solanum tuberosum</italic> L. cv D&#x000E9;sir&#x000E9;e) plants</article-title>. <source>Plant Physiol</source>. <volume>107</volume>, <fpage>469</fpage>&#x02013;<lpage>477</lpage>. <pub-id pub-id-type="doi">10.1104/pp.107.2.469</pub-id><pub-id pub-id-type="pmid">12228373</pub-id></citation></ref>
<ref id="B14">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Li</surname> <given-names>Z.</given-names></name> <name><surname>Cheng</surname> <given-names>Y.</given-names></name> <name><surname>Cui</surname> <given-names>J.</given-names></name> <name><surname>Zhang</surname> <given-names>P.</given-names></name> <name><surname>Zhao</surname> <given-names>H.</given-names></name> <name><surname>Hu</surname> <given-names>S.</given-names></name></person-group> (<year>2015</year>). <article-title>Comparative transcriptome analysis reveals carbohydrate and lipid metabolism blocks in <italic>Brassica napus</italic> L. male sterility induced by the chemical hybridization agent monosulfuron ester sodium</article-title>. <source>BMC Genomics</source> <volume>16</volume>:<fpage>206</fpage>. <pub-id pub-id-type="doi">10.1186/s12864-015-1388-5</pub-id><pub-id pub-id-type="pmid">25880309</pub-id></citation></ref>
<ref id="B15">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Liu</surname> <given-names>F.</given-names></name> <name><surname>Marquardt</surname> <given-names>S.</given-names></name> <name><surname>Lister</surname> <given-names>C.</given-names></name> <name><surname>Swiezewski</surname> <given-names>S.</given-names></name> <name><surname>Dean</surname> <given-names>C.</given-names></name></person-group> (<year>2010</year>). <article-title>Targeted 3&#x00027; processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing</article-title>. <source>Science</source> <volume>327</volume>, <fpage>94</fpage>&#x02013;<lpage>97</lpage>. <pub-id pub-id-type="doi">10.1126/science.1180278</pub-id><pub-id pub-id-type="pmid">19965720</pub-id></citation></ref>
<ref id="B16">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Manabe</surname> <given-names>Y.</given-names></name> <name><surname>Tinker</surname> <given-names>N.</given-names></name> <name><surname>Colville</surname> <given-names>A.</given-names></name> <name><surname>Miki</surname> <given-names>B.</given-names></name></person-group> (<year>2007</year>). <article-title>CSR1, the sole target of imidazolinone herbicide in <italic>Arabidopsis thaliana</italic></article-title>. <source>Plant Cell Physiol.</source> <volume>48</volume>, <fpage>1340</fpage>&#x02013;<lpage>1358</lpage>. <pub-id pub-id-type="doi">10.1093/pcp/pcm105</pub-id><pub-id pub-id-type="pmid">17693453</pub-id></citation></ref>
<ref id="B17">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>McCourt</surname> <given-names>J. A.</given-names></name> <name><surname>Pang</surname> <given-names>S. S.</given-names></name> <name><surname>King-Scott</surname> <given-names>J.</given-names></name> <name><surname>Guddat</surname> <given-names>L. W.</given-names></name> <name><surname>Duggleby</surname> <given-names>R. G.</given-names></name></person-group> (<year>2006</year>). <article-title>Herbicide-binding sites revealed in the structure of plant acetohydroxyacid synthase</article-title>. <source>Proc. Natl. Acad. Sci. U.S.A.</source> <volume>103</volume>, <fpage>569</fpage>&#x02013;<lpage>573</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.0508701103</pub-id><pub-id pub-id-type="pmid">16407096</pub-id></citation></ref>
<ref id="B18">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>McDowell</surname> <given-names>S. C.</given-names></name> <name><surname>Lopez-Marques</surname> <given-names>R. L.</given-names></name> <name><surname>Cohen</surname> <given-names>T.</given-names></name> <name><surname>Brown</surname> <given-names>E.</given-names></name> <name><surname>Rosenberg</surname> <given-names>A.</given-names></name> <name><surname>Palmgren</surname> <given-names>M. G.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Loss of the <italic>Arabidopsis thaliana</italic> P4-ATPases ALA6 and ALA7 impairs pollen fitness and alters the pollen tube plasma membrane</article-title>. <source>Front. Plant Sci.</source> <volume>6</volume>:<fpage>197</fpage>. <pub-id pub-id-type="doi">10.3389/fpls.2015.00197</pub-id><pub-id pub-id-type="pmid">25954280</pub-id></citation></ref>
<ref id="B19">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pasquer</surname> <given-names>F.</given-names></name> <name><surname>Ochsner</surname> <given-names>U.</given-names></name> <name><surname>Zarn</surname> <given-names>J.</given-names></name> <name><surname>Keller</surname> <given-names>B.</given-names></name></person-group> (<year>2006</year>). <article-title>Common and distinct gene expression patterns induced by the herbicides 2, 4-dichlorophenoxyacetic acid, cinidon-ethyl and tribenuron-methyl in wheat</article-title>. <source>Pest Manag. Sci.</source> <volume>2</volume>, <fpage>1155</fpage>&#x02013;<lpage>1167</lpage>. <pub-id pub-id-type="doi">10.1002/ps.1291</pub-id></citation></ref>
<ref id="B20">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pu</surname> <given-names>Y.</given-names></name> <name><surname>Luo</surname> <given-names>X.</given-names></name> <name><surname>Bassham</surname> <given-names>D. C.</given-names></name></person-group> (<year>2017</year>). <article-title>TOR-dependent and&#x02013;independent pathways regulate autophagy in <italic>Arabidopsis thaliana</italic></article-title>. <source>Front. Plant Sci.</source> <volume>8</volume>:<fpage>1204</fpage>. <pub-id pub-id-type="doi">10.3389/fpls.2017.01204</pub-id><pub-id pub-id-type="pmid">28744293</pub-id></citation></ref>
<ref id="B21">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Qian</surname> <given-names>H.</given-names></name> <name><surname>Li</surname> <given-names>Y.</given-names></name> <name><surname>Sun</surname> <given-names>C.</given-names></name> <name><surname>Lavoie</surname> <given-names>M.</given-names></name> <name><surname>Xie</surname> <given-names>J.</given-names></name> <name><surname>Bai</surname> <given-names>X.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Trace concentrations of imazethapyr (IM) affect floral organs development and reproduction in <italic>Arabidopsis thaliana</italic>: IM-induced inhibition of key genes regulating anther and pollen biosynthesis</article-title>. <source>Ecotoxicology</source> <volume>24</volume>, <fpage>163</fpage>&#x02013;<lpage>171</lpage>. <pub-id pub-id-type="doi">10.1007/s10646-014-1369-5</pub-id><pub-id pub-id-type="pmid">25348600</pub-id></citation></ref>
<ref id="B22">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Qian</surname> <given-names>H.</given-names></name> <name><surname>Wang</surname> <given-names>R.</given-names></name> <name><surname>Hu</surname> <given-names>H.</given-names></name> <name><surname>Lu</surname> <given-names>T.</given-names></name> <name><surname>Chen</surname> <given-names>X.</given-names></name> <name><surname>Ye</surname> <given-names>H.</given-names></name> <etal/></person-group>. (<year>2011</year>). <article-title>Enantioselective phytotoxicity of the herbicide imazethapyr and its effect on rice physiology and gene transcription</article-title>. <source>Environ. Sci. Technol.</source> <volume>45</volume>, <fpage>7036</fpage>&#x02013;<lpage>7043</lpage>. <pub-id pub-id-type="doi">10.1021/es200703v</pub-id><pub-id pub-id-type="pmid">21749058</pub-id></citation></ref>
<ref id="B23">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ray</surname> <given-names>T. B.</given-names></name></person-group> (<year>1984</year>). <article-title>Site of action of chlorsulfuron-inhibition of valine and isolucine biosynthesis in plants</article-title>. <source>Plant Physiol.</source> <volume>75</volume>, <fpage>827</fpage>&#x02013;<lpage>831</lpage>. <pub-id pub-id-type="doi">10.1104/pp.75.3.827</pub-id><pub-id pub-id-type="pmid">16663712</pub-id></citation></ref>
<ref id="B24">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rogers</surname> <given-names>H. J.</given-names></name></person-group> (<year>2013</year>). <article-title>From models to ornamentals: how is flower senescence regulated?</article-title> <source>Plant Mol. Biol.</source> <volume>2</volume>, <fpage>563</fpage>&#x02013;<lpage>574</lpage>. <pub-id pub-id-type="doi">10.1007/s11103-012-9968-0</pub-id></citation></ref>
<ref id="B25">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rost</surname> <given-names>T. L.</given-names></name> <name><surname>Gladish</surname> <given-names>D.</given-names></name> <name><surname>Steffen</surname> <given-names>J.</given-names></name> <name><surname>Robbins</surname> <given-names>J.</given-names></name></person-group> (<year>1990</year>). <article-title>Is there a relationship between branched amino acid pool size and cell cycle inhibition in roots treated with imidazolinone herbicides?</article-title> <source>J. Plant Growth Regul.</source> <volume>9</volume>, <fpage>227</fpage>&#x02013;<lpage>232</lpage>. <pub-id pub-id-type="doi">10.1007/BF02041967</pub-id></citation></ref>
<ref id="B26">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Royuela</surname> <given-names>M.</given-names></name> <name><surname>Gonzalez</surname> <given-names>A.</given-names></name> <name><surname>Gonzalez</surname> <given-names>E. M.</given-names></name> <name><surname>Arrese-Igor</surname> <given-names>C.</given-names></name> <name><surname>Aparicio-Tejo</surname> <given-names>P. M.</given-names></name> <name><surname>Gonzalez-Murua</surname> <given-names>C.</given-names></name></person-group> (<year>2000</year>). <article-title>Physiological consequences of continuous, sublethal imazethapyr supply to pea plants</article-title>. <source>J. Plant Physiol.</source> <volume>157</volume>, <fpage>345</fpage>&#x02013;<lpage>354</lpage>. <pub-id pub-id-type="doi">10.1016/S0176-1617(00)80057-7</pub-id></citation></ref>
<ref id="B27">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Saja</surname> <given-names>D.</given-names></name> <name><surname>Rys</surname> <given-names>M.</given-names></name> <name><surname>Stawoska</surname> <given-names>I.</given-names></name> <name><surname>Skoczowski</surname> <given-names>A.</given-names></name></person-group> (<year>2016</year>). <article-title>Metabolic response of cornflower (<italic>Centaurea cyanus</italic> L.) exposed to tribenuron-methyl: one of the active substances of sulfonylurea herbicides</article-title>. <source>Acta Physiol. Plant.</source> <volume>38</volume>:<fpage>168</fpage>. <pub-id pub-id-type="doi">10.1007/s11738-016-2183-x</pub-id></citation></ref>
<ref id="B28">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schmittgen</surname> <given-names>T. D.</given-names></name> <name><surname>Livak</surname> <given-names>K. J.</given-names></name></person-group> (<year>2008</year>). <article-title>Analyzing real-time PCR data by the comparative C(T) method</article-title>. <source>Nat. Protoc.</source> <volume>3</volume>, <fpage>1101</fpage>&#x02013;<lpage>1108</lpage>. <pub-id pub-id-type="doi">10.1038/nprot.2008.73</pub-id><pub-id pub-id-type="pmid">18546601</pub-id></citation></ref>
<ref id="B29">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Shaner</surname> <given-names>D. L.</given-names></name> <name><surname>Singh</surname> <given-names>B. K.</given-names></name></person-group> (<year>1993</year>). <article-title>Phytotoxicity of acetohydroxyacid synthase inhibitors is not due to accumulation of 2-ketobutyrate and/or 2-amino butyrate</article-title>. <source>Plant Physiol.</source> <volume>103</volume>, <fpage>1221</fpage>&#x02013;<lpage>1226</lpage>. <pub-id pub-id-type="doi">10.1104/pp.103.4.1221</pub-id><pub-id pub-id-type="pmid">12232015</pub-id></citation></ref>
<ref id="B30">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Shim</surname> <given-names>S. I.</given-names></name> <name><surname>Lee</surname> <given-names>B. M.</given-names></name> <name><surname>Ryu</surname> <given-names>E. I.</given-names></name> <name><surname>Kang</surname> <given-names>B. H.</given-names></name></person-group> (<year>2003</year>). <article-title>Response of leaf acetolactate synthase from different leaf positions and seedling ages to sulfonylurea herbicide</article-title>. <source>Pest Biochem. Physiol.</source> <volume>75</volume>, <fpage>39</fpage>&#x02013;<lpage>46</lpage>. <pub-id pub-id-type="doi">10.1016/S0048-3575(03)00016-6</pub-id></citation></ref>
<ref id="B31">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Shimizu</surname> <given-names>M.</given-names></name> <name><surname>Goto</surname> <given-names>M.</given-names></name> <name><surname>Hanai</surname> <given-names>M.</given-names></name> <name><surname>Shimizu</surname> <given-names>T.</given-names></name> <name><surname>Izawa</surname> <given-names>N.</given-names></name> <name><surname>Kanamoto</surname> <given-names>H.</given-names></name> <etal/></person-group>. (<year>2008</year>). <article-title>Selectable tolerance to herbicides by mutated acetolactate synthase genes integrated into the chloroplast genome of tobacco</article-title>. <source>Plant Physiol.</source> <volume>147</volume>, <fpage>1976</fpage>&#x02013;<lpage>1983</lpage>. <pub-id pub-id-type="doi">10.1104/pp.108.120519</pub-id><pub-id pub-id-type="pmid">18515641</pub-id></citation></ref>
<ref id="B32">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Simpson</surname> <given-names>D. M.</given-names></name> <name><surname>Stoller</surname> <given-names>E. W.</given-names></name> <name><surname>Wax</surname> <given-names>L. M.</given-names></name></person-group> (<year>1995</year>). <article-title>An <italic>in vivo</italic> acetolactate synthase assay</article-title>. <source>Weed Technol.</source> <volume>9</volume>, <fpage>17</fpage>&#x02013;<lpage>22</lpage>.</citation></ref>
<ref id="B33">
<citation citation-type="web"><person-group person-group-type="author"><name><surname>Singh</surname> <given-names>V.</given-names></name> <name><surname>Chauhan</surname> <given-names>S. V. S.</given-names></name></person-group> (<year>2007</year>). <article-title>Molecular evaluation of chemically induced male sterility in <italic>Brassica juncea</italic> (L.) Czern &#x00026; Coss</article-title>, in <source>Proceedings of GCIRC 12th International Rapeseed Congress, II Sustainable Development in Cruciferous Oilseed Crops Production</source> (<publisher-loc>Wuhan</publisher-loc>). Available online at: <ext-link ext-link-type="uri" xlink:href="http://ssrn.com/abstract=1090304">http://ssrn.com/abstract=1090304</ext-link></citation></ref>
<ref id="B34">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sun</surname> <given-names>C.</given-names></name> <name><surname>Chen</surname> <given-names>S.</given-names></name> <name><surname>Jin</surname> <given-names>Y.</given-names></name> <name><surname>Song</surname> <given-names>H.</given-names></name> <name><surname>Ruan</surname> <given-names>S.</given-names></name> <name><surname>Fu</surname> <given-names>Z.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Effects of the herbicide imazethapyr on photosynthesis in PGR5- and NDH-deficient <italic>Arabidopsis thaliana</italic> at the biochemical, transcriptomic, and proteomic levels</article-title>. <source>J. Agric. Food Chem.</source> <volume>64</volume>, <fpage>4497</fpage>&#x02013;<lpage>4504</lpage>. <pub-id pub-id-type="doi">10.1021/acs.jafc.6b01699</pub-id><pub-id pub-id-type="pmid">27215288</pub-id></citation></ref>
<ref id="B35">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tripathi</surname> <given-names>S. M.</given-names></name> <name><surname>Singh</surname> <given-names>K. P.</given-names></name></person-group> (<year>2008</year>). <article-title>Abnormal another development and high sporopollenin synthesis in benzotriazole treated male sterile <italic>Helianthus annuus</italic> L</article-title>. <source>Indian J. Exp. Biol.</source> <volume>46</volume>, <fpage>71</fpage>&#x02013;<lpage>78</lpage>. <pub-id pub-id-type="pmid">18697575</pub-id></citation></ref>
<ref id="B36">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Xia</surname> <given-names>S.</given-names></name> <name><surname>Wang</surname> <given-names>Z.</given-names></name> <name><surname>Zhang</surname> <given-names>H.</given-names></name> <name><surname>Hu</surname> <given-names>K.</given-names></name> <name><surname>Zhang</surname> <given-names>Z.</given-names></name> <name><surname>Qin</surname> <given-names>M.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Altered transcription and neofunctionalization of duplicated genes rescue the harmful effects of a chimeric gene in <italic>Brassica napus</italic></article-title>. <source>Plant Cell</source> <volume>28</volume>, <fpage>2060</fpage>&#x02013;<lpage>2078</lpage>. <pub-id pub-id-type="doi">10.1105/tpc.16.00281</pub-id></citation></ref>
<ref id="B37">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yu</surname> <given-names>C.</given-names></name> <name><surname>He</surname> <given-names>B.</given-names></name></person-group> (<year>2014</year>). <article-title>Evaluation of male-sterility induction effect of various amino acid biosynthesis inhibiting-herbicides on rapeseed (<italic>Brassica napus</italic>)</article-title>. <source>Acta Agron. Sin.</source> <volume>40</volume>, <fpage>264</fpage>&#x02013;<lpage>272</lpage>. <pub-id pub-id-type="doi">10.3724/SP.J.1006.2014.00264</pub-id></citation></ref>
<ref id="B38">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yu</surname> <given-names>C.</given-names></name> <name><surname>Hu</surname> <given-names>S.</given-names></name> <name><surname>He</surname> <given-names>P.</given-names></name> <name><surname>Sun</surname> <given-names>G.</given-names></name> <name><surname>Zhang</surname> <given-names>C.</given-names></name> <name><surname>Yu</surname> <given-names>Y.</given-names></name></person-group> (<year>2006</year>). <article-title>Inducing male sterility in <italic>Brassica napus</italic> L. by a sulphonylurea herbicide tribenuron-methyl</article-title>. <source>Plant Breed</source>. <volume>125</volume>, <fpage>61</fpage>&#x02013;<lpage>64</lpage>. <pub-id pub-id-type="doi">10.1111/j.1439-0523.2006.01180.x</pub-id></citation></ref>
<ref id="B39">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yu</surname> <given-names>C.</given-names></name> <name><surname>Xu</surname> <given-names>X.</given-names></name> <name><surname>Ge</surname> <given-names>J.</given-names></name> <name><surname>Guo</surname> <given-names>Y.</given-names></name> <name><surname>Dong</surname> <given-names>J.</given-names></name> <name><surname>Dong</surname> <given-names>Z.</given-names></name></person-group> (<year>2016</year>). <article-title>Premature breakdown of tapetum associated with reverse thermo-sensitive genic male-sterile line Huiyou50S in rapeseed (<italic>Brassica napus</italic>)</article-title>. <source>Acta Physiol. Plant</source>. <volume>38</volume>, <fpage>54</fpage>. <pub-id pub-id-type="doi">10.1007/s11738-015-2039-9</pub-id></citation></ref>
<ref id="B40">
<citation citation-type="book"><person-group person-group-type="author"><name><surname>Yu</surname> <given-names>C. Y.</given-names></name></person-group> (<year>2009</year>). <source>Characterization and Mechanism of Action of Novel Chemical Hybridizing Agents for Plants</source>. Doctoral dissertation, <publisher-name>Northwest A &#x00026; F University</publisher-name>.</citation></ref>
<ref id="B41">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yu</surname> <given-names>C. Y.</given-names></name> <name><surname>Dong</surname> <given-names>J. G.</given-names></name> <name><surname>Hu</surname> <given-names>S. W.</given-names></name> <name><surname>He</surname> <given-names>P. R.</given-names></name></person-group> (<year>2009</year>). <article-title>Efficiency of a novel gametocide amidosulfuron on rapeseed (<italic>Brassica napus</italic>)</article-title>. <source>Plant Breed.</source> <volume>128</volume>, <fpage>538</fpage>&#x02013;<lpage>540</lpage>. <pub-id pub-id-type="doi">10.1111/j.1439-0523.2008.01594.x</pub-id></citation></ref>
<ref id="B42">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yu</surname> <given-names>C. Y.</given-names></name> <name><surname>Dong</surname> <given-names>J. G.</given-names></name> <name><surname>Hu</surname> <given-names>S. W.</given-names></name> <name><surname>Xu</surname> <given-names>A. X.</given-names></name></person-group> (<year>2017</year>). <article-title>Exposure to trace amounts of sulfonylurea herbicide tribenuron-methyl causes male sterility in 17 species or subspecies of cruciferous plants</article-title>. <source>BMC Plant Biol.</source> <volume>17</volume>:<fpage>95</fpage>. <pub-id pub-id-type="doi">10.1186/s12870-017-1019-1</pub-id><pub-id pub-id-type="pmid">28571580</pub-id></citation></ref>
<ref id="B43">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yu</surname> <given-names>C. Y.</given-names></name> <name><surname>Hu</surname> <given-names>S. W.</given-names></name> <name><surname>Zhao</surname> <given-names>H. X.</given-names></name> <name><surname>Guo</surname> <given-names>A. G.</given-names></name> <name><surname>Sun</surname> <given-names>G. L.</given-names></name></person-group> (<year>2005</year>). <article-title>Genetic distances revealed by morphological characters, isozymes, proteins and RAPD markers and their relationships with hybrid performance in oilseed rape</article-title>. <source>Theor. Appl. Genet.</source> <volume>110</volume>, <fpage>511</fpage>&#x02013;<lpage>518</lpage>. <pub-id pub-id-type="doi">10.1007/s00122-004-1858-7</pub-id><pub-id pub-id-type="pmid">15578151</pub-id></citation></ref>
<ref id="B44">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zabalza</surname> <given-names>A.</given-names></name> <name><surname>Zulet</surname> <given-names>A.</given-names></name> <name><surname>Gil-Monreal</surname> <given-names>M.</given-names></name> <name><surname>Igal</surname> <given-names>M.</given-names></name> <name><surname>Royuela</surname> <given-names>M.</given-names></name></person-group> (<year>2013</year>). <article-title>Branched-chain amino acid biosynthesis inhibitors: herbicide efficacy is associated with an induced carbon&#x02013;nitrogen imbalance</article-title>. <source>J. Plant Physiol.</source> <volume>170</volume>, <fpage>814</fpage>&#x02013;<lpage>821</lpage>. <pub-id pub-id-type="doi">10.1016/j.jplph.2013.01.003</pub-id><pub-id pub-id-type="pmid">23394788</pub-id></citation></ref>
<ref id="B45">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname> <given-names>Z. B.</given-names></name> <name><surname>Zhu</surname> <given-names>J.</given-names></name> <name><surname>Gao</surname> <given-names>J. F.</given-names></name> <name><surname>Wang</surname> <given-names>C.</given-names></name> <name><surname>Li</surname> <given-names>H.</given-names></name> <name><surname>Zhang</surname> <given-names>H. Q.</given-names></name> <etal/></person-group>. (<year>2007</year>). <article-title>Transcription factor AtMYB103 is required for anther development by regulating tapetum development, callose dissolution and exine formation in Arabidopsis</article-title>. <source>Plant J.</source> <volume>52</volume>, <fpage>528</fpage>&#x02013;<lpage>538</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-313X.2007.03254.x</pub-id><pub-id pub-id-type="pmid">17727613</pub-id></citation></ref>
<ref id="B46">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhao</surname> <given-names>L.</given-names></name> <name><surname>Jing</surname> <given-names>X.</given-names></name> <name><surname>Chen</surname> <given-names>L.</given-names></name> <name><surname>Liu</surname> <given-names>Y.</given-names></name> <name><surname>Su</surname> <given-names>Y.</given-names></name> <name><surname>Liu</surname> <given-names>T.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Tribenuron-methyl induces male sterility through anther-specific inhibition of acetolactate synthase leading to autophagic cell death</article-title>. <source>Mol. Plant</source> <volume>8</volume>, <fpage>1710</fpage>&#x02013;<lpage>1724</lpage>. <pub-id pub-id-type="doi">10.1016/j.molp.2015.08.009</pub-id><pub-id pub-id-type="pmid">26362932</pub-id></citation></ref>
<ref id="B47">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhou</surname> <given-names>Q.</given-names></name> <name><surname>Liu</surname> <given-names>W.</given-names></name> <name><surname>Zhang</surname> <given-names>Y.</given-names></name> <name><surname>Liu</surname> <given-names>K. K.</given-names></name></person-group> (<year>2007</year>). <article-title>Action mechanisms of acetolactate synthase-inhibiting herbicides</article-title>. <source>Pest Biochem. Physiol.</source> <volume>89</volume>, <fpage>89</fpage>&#x02013;<lpage>96</lpage>. <pub-id pub-id-type="doi">10.1016/j.pestbp.2007.04.004</pub-id></citation></ref>
<ref id="B48">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhu</surname> <given-names>Q.</given-names></name> <name><surname>Song</surname> <given-names>Y.</given-names></name> <name><surname>Zhang</surname> <given-names>G.</given-names></name> <name><surname>Ju</surname> <given-names>L.</given-names></name> <name><surname>Zhang</surname> <given-names>J.</given-names></name> <name><surname>Yu</surname> <given-names>Y.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title><italic>De novo</italic> assembly and transcriptome analysis of wheat with male sterility induced by the chemical hybridizing agent SQ-1</article-title>. <source>PLoS ONE</source> <volume>10</volume>:<fpage>e0123556</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0123556</pub-id><pub-id pub-id-type="pmid">25898130</pub-id></citation></ref>
</ref-list>
<glossary>
<def-list>
<title>Abbreviations</title>
<def-item><term>ALS</term>
<def><p>acetolactate synthase</p></def></def-item>
<def-item><term>BCAA</term>
<def><p>branched-chain amino acids</p></def></def-item>
<def-item><term>CIMS</term>
<def><p>chemically induced male sterility</p></def></def-item>
<def-item><term>DAT</term>
<def><p>days after treatment</p></def></def-item>
<def-item><term>DGE</term>
<def><p>digital gene expression</p></def></def-item>
<def-item><term>DETs</term>
<def><p>differential expression transcripts</p></def></def-item>
<def-item><term>MES</term>
<def><p>monosulfuron ester sodium</p></def></def-item>
<def-item><term>PMC</term>
<def><p>pollen mother cell</p></def></def-item>
<def-item><term>TEM</term>
<def><p>transmission electron microscopy.</p></def></def-item>
</def-list>
</glossary>
<fn-group>
<fn fn-type="financial-disclosure"><p><bold>Funding.</bold> This work was financially supported by the projects from the National Key R&#x00026;D Program of China (2016YFD0101300) and the Yangling Sci-Tech Plan (2016NY-04).</p>
</fn>
</fn-group>
</back>
</article>
