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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2017.01506</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Metabolic Pathways Involved in Carbon Dioxide Enhanced Heat Tolerance in Bermudagrass</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Yu</surname> <given-names>Jingjin</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/460308/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Li</surname> <given-names>Ran</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/445198/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Fan</surname> <given-names>Ningli</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Yang</surname> <given-names>Zhimin</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x002A;</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Huang</surname> <given-names>Bingru</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/226606/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>College of Agro-grassland Science, Nanjing Agricultural University</institution> <country>Nanjing, China</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Plant Biology and Pathology, Rutgers, The State University of New Jersey, New Brunswick</institution> <country>NJ, United States</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: <italic>Luis A. J. Mur, Aberystwyth University, United Kingdom</italic></p></fn>
<fn fn-type="edited-by"><p>Reviewed by: <italic>Lucia Guidi, University of Pisa, Italy; M. B. Kirkham, Kansas State University, United States</italic></p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x002A;Correspondence: <italic>Zhimin Yang, <email>nauyzm@njau.edu.cn</email> Bingru Huang, <email>huang@aesop.rutgers.edu</email></italic></p></fn>
<fn fn-type="other" id="fn002"><p><sup>&#x2020;</sup><italic>These authors have contributed equally to this work.</italic></p></fn>
<fn fn-type="other" id="fn003"><p>This article was submitted to Crop Science and Horticulture, a section of the journal Frontiers in Plant Science</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>19</day>
<month>09</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>8</volume>
<elocation-id>1506</elocation-id>
<history>
<date date-type="received">
<day>31</day>
<month>03</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>15</day>
<month>08</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2017 Yu, Li, Fan, Yang and Huang.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Yu, Li, Fan, Yang and Huang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Global climate changes involve elevated temperature and CO<sub>2</sub> concentration, imposing significant impact on plant growth of various plant species. Elevated temperature exacerbates heat damages, but elevated CO<sub>2</sub> has positive effects on promoting plant growth and heat tolerance. The objective of this study was to identify metabolic pathways affected by elevated CO<sub>2</sub> conferring the improvement of heat tolerance in a C<sub>4</sub> perennial grass species, bermudagrass (<italic>Cynodon dactylon</italic> Pers.). Plants were planted under either ambient CO<sub>2</sub> concentration (400 &#x03BC;mol&#x22C5;mol<sup>-1</sup>) or elevated CO<sub>2</sub> concentration (800 &#x03BC;mol&#x22C5;mol<sup>-1</sup>) and subjected to ambient temperature (30/25&#x00B0;C, day/night) or heat stress (45/40&#x00B0;C, day/night). Elevated CO<sub>2</sub> concentration suppressed heat-induced damages and improved heat tolerance in bermudagrass. The enhanced heat tolerance under elevated CO<sub>2</sub> was attributed to some important metabolic pathways during which proteins and metabolites were up-regulated, including light reaction (ATP synthase subunit and photosystem I reaction center subunit) and carbon fixation [(glyceraldehyde-3-phosphate dehydrogenase, GAPDH), fructose-bisphosphate aldolase, phosphoglycerate kinase, sedoheptulose-1,7-bisphosphatase and sugars) of photosynthesis, glycolysis (GAPDH, glucose, fructose, and galactose) and TCA cycle (pyruvic acid, malic acid and malate dehydrogenase) of respiration, amino acid metabolism (aspartic acid, methionine, threonine, isoleucine, lysine, valine, alanine, and isoleucine) as well as the GABA shunt (GABA, glutamic acid, alanine, proline and 5-oxoproline). The up-regulation of those metabolic processes by elevated CO<sub>2</sub> could at least partially contribute to the improvement of heat tolerance in perennial grass species.</p>
</abstract>
<kwd-group>
<kwd>bermudagrass</kwd>
<kwd>elevated CO<sub>2</sub></kwd>
<kwd>heat stress</kwd>
<kwd>metabolites</kwd>
<kwd>protein</kwd>
</kwd-group>
<contract-num rid="cn001">31301799</contract-num>
<contract-sponsor id="cn001">National Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content></contract-sponsor>
<counts>
<fig-count count="16"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="74"/>
<page-count count="22"/>
<word-count count="0"/>
</counts>
</article-meta>
</front>
<body>
<sec><title>Introduction</title>
<p>Global climate changes involve elevated temperature and CO<sub>2</sub> concentration, imposing significant impact on plant growth (<xref ref-type="bibr" rid="B25">Kirkham, 2011</xref>). During this century, global temperatures are predicted to rise by 2&#x2013;5&#x00B0;C; atmospheric CO<sub>2</sub> concentration has increased by 100 &#x03BC;mol mol<sup>-1</sup> since the beginning of the industrialized era and the concentration is predicted to continue rising at a rate of approximately 2 &#x03BC;mol mol<sup>-1</sup> per year (<xref ref-type="bibr" rid="B23">Intergovernmental Panel on Climate Change [IPCC], 2007</xref>). Previous research has shown that elevated CO<sub>2</sub> promotes plant growth under optimal growing temperatures in various plant species (<xref ref-type="bibr" rid="B18">Hamerlynck et al., 2000</xref>; <xref ref-type="bibr" rid="B40">Prasad et al., 2002</xref>; <xref ref-type="bibr" rid="B45">Qaderi et al., 2006</xref>). Recent research also found that elevated CO<sub>2</sub> has positive effects on promoting heat tolerance in terms of vegetative growth in C<sub>3</sub> species, such as rice (<italic>Oryza sativa</italic>) (<xref ref-type="bibr" rid="B57">Sujatha et al., 2008</xref>; <xref ref-type="bibr" rid="B16">Figueiredo et al., 2015</xref>; <xref ref-type="bibr" rid="B26">Lai et al., 2015</xref>), wheat (<italic>Triticum aestivum</italic>) (<xref ref-type="bibr" rid="B5">Bencze et al., 2005</xref>; <xref ref-type="bibr" rid="B3">Alonso et al., 2009</xref>), and cool-season perennial grass species (<xref ref-type="bibr" rid="B72">Yu et al., 2012a</xref>, <xref ref-type="bibr" rid="B74">2014</xref>) and C<sub>4</sub> plant species, such as <italic>Bouteloua gracilis</italic> (<xref ref-type="bibr" rid="B49">Read and Morgan, 1996</xref>), peanut (<italic>Arachis hypogaea</italic>) (<xref ref-type="bibr" rid="B41">Prasad et al., 2010</xref>), grain sorghum (<italic>Sorghum bicolor</italic>) (<xref ref-type="bibr" rid="B39">Prasad et al., 2006</xref>) and maize (<italic>Zea mays</italic>) (<xref ref-type="bibr" rid="B2">Abebe et al., 2016</xref>). The mechanisms regulating elevated CO<sub>2</sub> effects on C<sub>3</sub> plant species have been reported, which have been associated with enhanced cellular expansion and cell division resulted from increased carbohydrate availability and changes in proteins and gene transcript levels (<xref ref-type="bibr" rid="B44">Pritchard et al., 1999</xref>; <xref ref-type="bibr" rid="B25">Kirkham, 2011</xref>; <xref ref-type="bibr" rid="B35">Morgan et al., 2011</xref>; <xref ref-type="bibr" rid="B22">Huang and Xu, 2015</xref>). However, metabolic factors underlying elevated CO<sub>2</sub> improvement of heat tolerance in C<sub>4</sub> perennial grass species are not well understood.</p>
<p>Metabolic and proteomic analysis mostly in C<sub>3</sub> plant species demonstrated that elevated CO<sub>2</sub> causes changes in various metabolic processes or pathways such as photosynthetic carbon fixation, respiratory metabolism, cellular growth, and stress defense (<xref ref-type="bibr" rid="B17">Fukayama et al., 2009</xref>; <xref ref-type="bibr" rid="B72">Yu et al., 2012a</xref>, <xref ref-type="bibr" rid="B74">2014</xref>; <xref ref-type="bibr" rid="B12">Burgess and Huang, 2014</xref>, <xref ref-type="bibr" rid="B13">2016</xref>). The improved heat tolerance by doubling ambient CO<sub>2</sub> concentration in C<sub>3</sub> grass species, such as tall fescue (<italic>Festuca arundinacea</italic>), has been attributed to increases in the accumulation of metabolites, such as organic acids (shikimic acid, malonic acid, glyceric acid, threonic acid, galactaric acid, and citric acid), sugars (sucrose and maltose) and amino acids (valine, serine, and 5-oxoproline) involved in photosynthesis, respiration and amino acid metabolism (<xref ref-type="bibr" rid="B72">Yu et al., 2012a</xref>). In addition, doubling ambient CO<sub>2</sub> concentration significantly increased the accumulation of soluble leaf carbohydrates and activity of adenosine-5&#x2032;-diphosphoglucose pyrophosphorylase under high temperature in kidney bean (<italic>Phaseolus vulgaris</italic>) (<xref ref-type="bibr" rid="B42">Prasad et al., 2004</xref>). Proteomic profiling of tall fescue exposed to elevated CO<sub>2</sub> concentration under heat stress found increased abundance of proteins associated with functions of photosynthetic light reaction, electron transport carrier molecule, ATP generation enzyme and antioxidant system (<xref ref-type="bibr" rid="B74">Yu et al., 2014</xref>). It has been reported that C<sub>4</sub> plant species are generally less responsive to elevated CO<sub>2</sub> than C<sub>3</sub> species when they are exposed to their respective optimal temperature conditions (<xref ref-type="bibr" rid="B25">Kirkham, 2011</xref>; <xref ref-type="bibr" rid="B22">Huang and Xu, 2015</xref>). Mechanisms of elevated CO<sub>2</sub>-induced stimulation of photosynthesis in C<sub>3</sub> plants were mainly associated with changes in electron transport during in light reaction as well as capacity for carbon fixation and assimilation during dark respiration (<xref ref-type="bibr" rid="B73">Yu et al., 2012b</xref>, <xref ref-type="bibr" rid="B74">2014</xref>; <xref ref-type="bibr" rid="B22">Huang and Xu, 2015</xref>). However, the key changes in metabolites and proteins induced by elevated CO<sub>2</sub> in C<sub>4</sub> plants under heat stress have not yet to be determined.</p>
<p>The objective of the current study was to identify metabolic pathways affected by elevated CO<sub>2</sub> conferring the improvement of heat tolerance in a C<sub>4</sub> perennial grass species, bermudagrass (<italic>Cynodon dactylon</italic>) widely used as forage and turfgrass species. Understanding changes of metabolites and proteins in C<sub>4</sub> species in response to elevated CO<sub>2</sub> concentration will provide new insights to mechanisms about elevated CO<sub>2</sub>-mitigated effects on heat stress.</p>
</sec>
<sec id="s1" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec><title>Plant Materials and Growth Conditions</title>
<p>Stolons of bermudagrass (cv. &#x2018;Tifway&#x2019;) plants were collected from the research farm at Nanjing Agricultural University in Nanjing, China, and transplanted into pots (20 cm in diameter and 20 cm in depth) filled with a mixture of soil and sand (soil: sand = 1:1, v/v). Plants were grown in a greenhouse with average temperature of 30/22&#x00B0;C (day/night), natural sunlight and irrigated once a week with half-strength Hoagland&#x2019;s nutrient solution (<xref ref-type="bibr" rid="B20">Hoagland and Arnon, 1950</xref>) to establish canopy and roots for 2 months. During this period, plants were trimmed once a week to keep a canopy height of 4&#x2013;5 cm. After establishment, plants were transferred to growth chambers (Xubang, Jinan, Shandong province, China) with the temperature of 30/25&#x00B0;C (day/night), 70% relative humidity, photosynthetically active radiation of 650 &#x03BC;mol&#x22C5;m<sup>-2</sup>&#x22C5;s<sup>-1</sup> and a 12-h photoperiod.</p>
</sec>
<sec><title>Experimental Design and Treatments</title>
<p>The CO<sub>2</sub> concentrations set-up and control in growth chambers followed the same designed as described in <xref ref-type="bibr" rid="B72">Yu et al. (2012a</xref>,<xref ref-type="bibr" rid="B73">b</xref>). Each CO<sub>2</sub> treatment was imposed in four growth chambers on September 1, 2015. In order to evaluate the long-term effects of elevated CO<sub>2</sub>, plants were grown under the two CO<sub>2</sub> concentrations for 70 days prior to the exposure to heat stress. Plants grown under either CO<sub>2</sub> treatment was then exposed to (45/40&#x00B0;C) (heat stress) or 30/25&#x00B0;C (non-stress control) in two growth chambers on November 9, 2015 until December 8, 2015. Plants were randomly relocated in each chamber twice per week to avoid confounding effects of environmental variation between different chambers. The CO<sub>2</sub> concentration inside each growth chamber was controlled by an automated, open-chamber CO<sub>2</sub> control system connected to a gas tank containing 100% CO<sub>2</sub> (<xref ref-type="bibr" rid="B71">Yu et al., 2015</xref>).</p>
<p>The experiment was arranged as factorial design with two CO<sub>2</sub> concentrations (ambient CO<sub>2</sub> concentration at 400 &#x00B1; 10 &#x03BC;mol&#x22C5;mol<sup>-1</sup> and elevated CO<sub>2</sub> concentration at 800 &#x00B1; 10 &#x03BC;mol&#x22C5;mol<sup>-1</sup>) and two temperature treatments [30/25&#x00B0;C (day/night, optimal temperature control) and 45/40&#x00B0;C (day/night, heat stress)]. Each treatment was repeated in four pots of plants (four replicates).</p>
</sec>
<sec><title>Measurements of Physiological Indexes</title>
<p>Leaf net photosynthetic rate (<italic>P</italic><sub>n</sub>) was determined by inserting 4&#x2013;5 individual leaves (second full-expanded from the top) collected from each pot to a 6 cm<sup>2</sup> cuvette with a portable infrared gas analyzer (Li-6400, LI-COR, Inc., Lincoln, NB, United States). Leaves were placed in a leaf chamber with a built-in red and blue light source of the Li-6400 with the light intensity of 800 &#x03BC;mol photon&#x22C5;m<sup>-2</sup>&#x22C5;s<sup>-1</sup>.</p>
<p>For leaf chlorophyll content (Chl), 0.2 g of fresh leaves were detached from plants and then immersed in dimethyl sulfoxide (DMSO) in dark for at least 72 h for a complete extraction of total chlorophyll. The absorbance of the Chl extract was measured at wavelengths of 663 and 645 nm, respectively, by a spectrophotometer (Ultrospec 2100 pro, Biochrom Ltd., Cambridge, England) to calculate Chla and Chlb content. Chl was determined as described by <xref ref-type="bibr" rid="B4">Arnon (1949)</xref>. For photochemical efficiency (<italic>F</italic><sub>v</sub>/<italic>F</italic><sub>m</sub>), chlorophyll fluorescence (the ratio of variable to maximum fluorescence as <italic>F</italic><sub>v</sub>/<italic>F</italic><sub>m</sub>) was measured by a fluorescence induction monitor (Bioscientific Ltd., Herts, United Kingdom) following 30 min dark acclimation through leaf tips.</p>
</sec>
<sec><title>Metabolites Extraction and Quantification</title>
<p>The extraction procedure was conducted following the method of <xref ref-type="bibr" rid="B51">Roessner et al. (2000)</xref> and <xref ref-type="bibr" rid="B50">Rizhsky et al. (2004)</xref>. Leaf samples collected at 28 days of treatment were collected and immediately frozen in liquid nitrogen, then stored at -80&#x00B0;C for metabolic profiling analysis. For each sample, frozen dry leaves were ground to a fine powder with liquid nitrogen, and then 25 mg of powder was transferred into a 10 mL microcentrifuge tubes, and extracted in 1.4 mL of 80% (v/v) aqueous methanol at 23&#x00B0;C for 2 h. Ribitol solution of 10 &#x03BC;L (2 mg&#x22C5;mL<sup>-1</sup> water) as an internal standard was added prior to incubation. Then, extraction was performed in a water bath at 70&#x00B0;C for 15 min. Tubes were centrifuged for 30 min at 9660 <italic>g</italic>n and the supernatant was decanted into new tubes, 1.4 mL of water and 0.75 mL of chloroform were added. The mixture was vortexed thoroughly and centrifuged for 15 min at 5025 <italic>g</italic>n and then 1 mL of the polar phase (methanol/water) was pipetted into HPLC vials and dried in a centrifugal concentrator (Centrivap, Labconco Corporation, Kansas City, MO, United States). The dried polar phase was methoximated with 80 &#x03BC;L of 20 mg&#x22C5;mL<sup>-1</sup> methoxyamine hydrochloride at 30&#x00B0;C for 90 min and then was trimethylsilylated with 80 &#x03BC;L N-methyl-N-(trimethylsilyl) trifluoroacetamide (MSTFA) (with 1% TMCS) for 60 min at 70&#x00B0;C.</p>
<p>The Gas Chromatography-Mass Spectrometer (GC-MS) analysis was modified from <xref ref-type="bibr" rid="B46">Qiu et al. (2007)</xref>. The derivatized extracts were analyzed with a GC coupled with a TurboMass-Autosystem XL MS (Perkin Elmer Inc., Waltham, MA, United States). A 1 &#x03BC;L extracts was injected into a DB-5MS capillary column (30 m &#x00D7; 0.25 mm &#x00D7; 0.25 &#x03BC;m, Agilent J &#x0026; W Scientific, Folsom, CA, United States). The inlet temperature was held at 260&#x00B0;C. After a 6.5 min solvent delay, initial GC oven temperature was maintained at 60&#x00B0;C; 1 min after injection, the GC oven temperature was raised to 280&#x00B0;C at a rate of 5&#x00B0;C&#x22C5;in<sup>-1</sup>, and finally maintained at 280&#x00B0;C for 15 min. The injection temperature was set at 280&#x00B0;C and the ion source temperature was adjusted to 200&#x00B0;C. Helium was used as the carrier gas with a constant flow rate of 1 mL&#x22C5;min<sup>-1</sup>. The measurements were performed through electron impact ionization (70 eV) in the full scan mode (m/z 30&#x2013;550). The detected metabolites were identified with Turbomass 4.1.1 software (PerkinElmer Inc., Waltham, MA, United States). For GC/MS results, compounds were identified based on retention time (RT) and comparison with reference spectra in mass spectral libraries.</p>
</sec>
<sec><title>Protein Extraction and Quantification</title>
<p>Leaf samples were collected from each tube at 28 days, immediately frozen in liquid nitrogen, then ground into fine powder and stored at -80&#x00B0;C until analysis. Proteins were extracted using the trichloroacetic acid (TCA)/Acetone method described from <xref ref-type="bibr" rid="B65">Xu and Huang (2008)</xref>. Leaf powder samples (0.5 g) were homogenized on ice in precipitation solution (10% TCA and 0.07% 2-mercaptoethanol in acetone) for 10 min and then incubated at -20&#x00B0;C for 2 h. The protein pellet was collected and washed with cold acetone containing 0.07% 2-mercaptoethanol until the supernatant was colorless. The pellet was then vacuum-dried and suspended in resolubilization solution [8 M urea, 2 M thiourea, 2% CHAPS, 1% dithiothreitol (DTT), and 1% pharmalyte]. The suspension was centrifuged at 21000 <italic>g</italic> for 20 min and the supernatant was collected for further protein quantification. Protein content was determined using the method of <xref ref-type="bibr" rid="B11">Bradford (1976)</xref>. A 10 &#x03BC;L aliquot of protein extract was mixed with 0.5 mL of a commercial color reagent (Bio-Rad Laboratories, Hercules, CA, United States) by a bovine serum albumin (BSA) standard. The absorbance was measured spectrophotometrically at 595 nm between 5 and 30 min after reaction.</p>
</sec>
<sec><title>Two-Dimensional PAGE and Protein Analysis</title>
<p>An IPGPhor apparatus (GE Healthcare, Waukesha, WI, United States) was used for the first isoelectric focusing (IEF) described by <xref ref-type="bibr" rid="B65">Xu and Huang (2008)</xref>. The extracts containing 300 &#x03BC;g of sample protein were used for IEF in immobilized pH gradient (IPG) strips (pH 3.0&#x2013;10.0, linear gradient, 13 cm), formed by rehydrating strips for 12 h at room temperature in 250 &#x03BC;L of rehydration buffer (8 M urea, 2 M thiourea, 2% CHAPS, 1% DTT, 1% v/v IPG buffer, and 0.002% bromophenol blue). Following IEF, the IPG strips were equilibrated for 15 min twice at room temperature in equilibration buffer (50 mM Tris&#x2013;HCl pH 8.8, 6 M urea, 30% glycerol, 2% SDS, and 1% DTT), then transferred to the same equilibration buffer containing 2.5% iodoacetamide instead of 1% DTT. The second dimension electrophoresis was run on a 12.5% SDS&#x2013;polyacrylamide gel with a Hoefer SE 600 Ruby electrophoresis apparatus (GE Healthcare, Waukesha, WI, United States). The running conditions were 5 mA per strip for 30 min followed by 20 mA per strip for about 5 h. Gels were stained with Coomassie brilliant blue G-250 and scanned using a Personal Densitometer SI (63-0016-46, GE Healthcare, Waukesha, WI, United States).</p>
<p>Gel images analysis was performed by Progenesis software (Nonlinear Dynamics, Durham, NC, United States). Automatic default spot analysis settings were coupled with manual correction and editing of spot features. The spot volumes were normalized as a percentage of the total volume of all spots on the gel to correct the variability due to staining. Variance analysis of data was used to test the treatment effects on each transgenic line.</p>
<p>Selected protein spots were manually excised from gels and subjected to a trypsin digestion. The peptides were identified by MALDI-TOF-MS as described by <xref ref-type="bibr" rid="B65">Xu and Huang (2008)</xref>. Data were searched against the National Center for Biotechnology Information (NCBI) database. Proteins containing at least two peptides with a confidence interval value >95% were considered to be successfully identified (<xref ref-type="bibr" rid="B31">Ma et al., 2016</xref>).</p>
<p>Protein functional classification was performed by Mapman software (<xref ref-type="bibr" rid="B61">Thimm et al., 2004</xref>) in combination with the criteria proposed by <xref ref-type="bibr" rid="B8">Bevan et al. (1998)</xref>. The identified proteins were distributed to different subcellular location by SUBA (<xref ref-type="bibr" rid="B59">Tanz et al., 2013</xref>). Gene ontology (GO) for biological process, molecular function and cellular component was conducted by the agrigo database<sup><xref ref-type="fn" rid="fn01">1</xref></sup>; threshold was -log10 > 4 (<xref ref-type="bibr" rid="B31">Ma et al., 2016</xref>).</p>
</sec>
<sec><title>Statistical Analysis</title>
<p>Data were analyzed using statistics software (SPSS 13.0; SPSS Inc., Chicago, IL, United States). Analysis of variance (ANOVA) was used to determine differences among treatment effects at a given treatment time. The means &#x00B1; SE were calculated for each parameter. When a particular <italic>F-</italic>test was significant, means were tested with least significant difference (LSD) at a confidence level of 0.05.</p>
</sec>
</sec>
<sec><title>Results</title>
<sec><title>Physiological Effects of Elevated CO<sub>2</sub></title>
<p>Under normal temperature, elevated CO<sub>2</sub> significantly increased <italic>P</italic><sub>n</sub> and Chl (<bold>Figures <xref ref-type="fig" rid="F1">1A,B</xref></bold>) while it had no significant effects on <italic>F</italic>v/<italic>F</italic>m (<bold>Figure <xref ref-type="fig" rid="F1">1C</xref></bold>). Under heat stress, plants grown at elevated CO<sub>2</sub> had significantly higher <italic>P</italic><sub>n</sub> (<bold>Figure <xref ref-type="fig" rid="F1">1A</xref></bold>), Chl (<bold>Figure <xref ref-type="fig" rid="F1">1B</xref></bold>), and <italic>F</italic><sub>v</sub>/<italic>F</italic><sub>m</sub> (<bold>Figure <xref ref-type="fig" rid="F1">1C</xref></bold>) than that at ambient CO<sub>2</sub> concentration.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Effects of elevated CO<sub>2</sub> concentration (800 &#x03BC;mol&#x22C5;mol<sup>-1</sup> vs. 400 &#x03BC;mol&#x22C5;mol<sup>-1</sup>) on net photosynthetic rate (<italic>P</italic><sub>n</sub>) <bold>(A)</bold>, chlorophyll content (Chl) <bold>(B)</bold> and <bold>(C)</bold> photochemical efficiency (<italic>F</italic><sub>v</sub>/<italic>F</italic><sub>m</sub>) in response to heat stress in bermudagrass. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively. Vertical bars indicate significant difference based on LSD values (<italic>P</italic> &#x2264; 0.05) for the comparison among treatments.</p></caption>
<graphic xlink:href="fpls-08-01506-g001.tif"/>
</fig>
</sec>
<sec><title>Effects of Elevated CO<sub>2</sub> on Metabolic Profiles</title>
<p>A total of 53 metabolites, including 18 organic acids and phosphoric acid, 12 amino acids, 18 sugars and 4 sugar alcohols, in responsive to elevated CO<sub>2</sub> and heat stress were identified and quantified by GC-MS. The name, RT, derivative and mass to charge (m/z) as well as the relative expression of each metabolite was presented in <bold>Figure <xref ref-type="fig" rid="F2">2</xref></bold> and <bold>Table <xref ref-type="table" rid="T1">1</xref></bold>.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Heat map analysis of total 53 differentially expressed metabolites in response to different temperatures and CO<sub>2</sub> concentrations. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively.</p></caption>
<graphic xlink:href="fpls-08-01506-g002.tif"/>
</fig>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Metabolites identified by GC-MS in response to different CO<sub>2</sub> concentrations and temperatures in leaves of bermudagrass at 28 days of treatments.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left">Compound</th>
<th valign="top" align="left">RT</th>
<th valign="top" align="left">Derivative</th>
<th valign="top" align="left">m/z</th>
<th valign="top" align="left">Compound</th>
<th valign="top" align="left">RT</th>
<th valign="top" align="left">Derivative</th>
<th valign="top" align="left">m/z</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Pyruvic acid</td>
<td valign="top" align="left">8.8</td>
<td valign="top" align="left">O-TMS<sup>a</sup>,MEOX1<sup>b</sup></td>
<td valign="top" align="left">174</td>
<td valign="top" align="left">Erythrose</td>
<td valign="top" align="left">30.306</td>
<td valign="top" align="left">O-3TMS,MEOX1</td>
<td valign="top" align="left">205</td>
</tr>
<tr>
<td valign="top" align="left">Lactic acid</td>
<td valign="top" align="left">9.091</td>
<td valign="top" align="left">O-2TMS</td>
<td valign="top" align="left">147</td>
<td valign="top" align="left">Tagatose</td>
<td valign="top" align="left">31.15</td>
<td valign="top" align="left">O-5TMS,MEOX1</td>
<td valign="top" align="left">103</td>
</tr>
<tr>
<td valign="top" align="left">Propenoic acid</td>
<td valign="top" align="left">9.819</td>
<td valign="top" align="left">O-2TMS</td>
<td valign="top" align="left">147</td>
<td valign="top" align="left">Pimelic acid</td>
<td valign="top" align="left">32.978</td>
<td valign="top" align="left">O-3TMS</td>
<td valign="top" align="left">300</td>
</tr>
<tr>
<td valign="top" align="left">Alanine</td>
<td valign="top" align="left">10.24</td>
<td valign="top" align="left">N,O-TMS</td>
<td valign="top" align="left">116</td>
<td valign="top" align="left">Myo-Inositol</td>
<td valign="top" align="left">33.289</td>
<td valign="top" align="left">O-6TMS</td>
<td valign="top" align="left">305</td>
</tr>
<tr>
<td valign="top" align="left">Oxalic acid</td>
<td valign="top" align="left">11.267</td>
<td valign="top" align="left">O-2TMS</td>
<td valign="top" align="left">147</td>
<td valign="top" align="left">Allose</td>
<td valign="top" align="left">33.641</td>
<td valign="top" align="left">O-5TMS,MEOX1</td>
<td valign="top" align="left">319</td>
</tr>
<tr>
<td valign="top" align="left">Valine</td>
<td valign="top" align="left">13.331</td>
<td valign="top" align="left">N,O-TMS</td>
<td valign="top" align="left">144</td>
<td valign="top" align="left">Glucopyranose</td>
<td valign="top" align="left">33.802</td>
<td valign="top" align="left">O-6TMS</td>
<td valign="top" align="left">389</td>
</tr>
<tr>
<td valign="top" align="left">Glycerol</td>
<td valign="top" align="left">14.977</td>
<td valign="top" align="left">O-2TMS</td>
<td valign="top" align="left">205</td>
<td valign="top" align="left">Cellobiose</td>
<td valign="top" align="left">35.218</td>
<td valign="top" align="left">O-8TMS</td>
<td valign="top" align="left">204</td>
</tr>
<tr>
<td valign="top" align="left">Isoleucine</td>
<td valign="top" align="left">15.47</td>
<td valign="top" align="left">O-2TMS</td>
<td valign="top" align="left">117</td>
<td valign="top" align="left">Gulose</td>
<td valign="top" align="left">35.932</td>
<td valign="top" align="left">O-5TMS</td>
<td valign="top" align="left">204</td>
</tr>
<tr>
<td valign="top" align="left">Proline</td>
<td valign="top" align="left">15.547</td>
<td valign="top" align="left">N,O-TMS</td>
<td valign="top" align="left">142</td>
<td valign="top" align="left">Maltose</td>
<td valign="top" align="left">40.354</td>
<td valign="top" align="left">O-8TMS</td>
<td valign="top" align="left">204</td>
</tr>
<tr>
<td valign="top" align="left">Glycine</td>
<td valign="top" align="left">15.785</td>
<td valign="top" align="left">N,N,O-TMS</td>
<td valign="top" align="left">174</td>
<td valign="top" align="left">Galacturonic acid</td>
<td valign="top" align="left">40.611</td>
<td valign="top" align="left">O-5TMS</td>
<td valign="top" align="left">204</td>
</tr>
<tr>
<td valign="top" align="left">Succinic acid</td>
<td valign="top" align="left">16.059</td>
<td valign="top" align="left">O-2TMS</td>
<td valign="top" align="left">147</td>
<td valign="top" align="left">Mannobiose</td>
<td valign="top" align="left">40.972</td>
<td valign="top" align="left">O-8TMS</td>
<td valign="top" align="left">204</td>
</tr>
<tr>
<td valign="top" align="left">Glyceric Acid</td>
<td valign="top" align="left">16.4167</td>
<td valign="top" align="left">O-3TMS</td>
<td valign="top" align="left">147</td>
<td valign="top" align="left">Sucrose</td>
<td valign="top" align="left">42.414</td>
<td valign="top" align="left">O-8TMS</td>
<td valign="top" align="left">361</td>
</tr>
<tr>
<td valign="top" align="left">Serine</td>
<td valign="top" align="left">17.274</td>
<td valign="top" align="left">N,O,O-TMS</td>
<td valign="top" align="left">204</td>
<td valign="top" align="left">Galactinol</td>
<td valign="top" align="left">47.19</td>
<td valign="top" align="left">O-9TMS</td>
<td valign="top" align="left">204</td>
</tr>
<tr>
<td valign="top" align="left">Threonine</td>
<td valign="top" align="left">17.929</td>
<td valign="top" align="left">N,O,O-TMS</td>
<td valign="top" align="left">218</td>
<td valign="top" align="left">Gentiobiose</td>
<td valign="top" align="left">49.095</td>
<td valign="top" align="left">O-8TMS</td>
<td valign="top" align="left">204</td>
</tr>
<tr>
<td valign="top" align="left">Malic acid</td>
<td valign="top" align="left">20.565</td>
<td valign="top" align="left">O-3TMS</td>
<td valign="top" align="left">147</td>
<td valign="top" align="left">Psicose</td>
<td valign="top" align="left">26.779</td>
<td valign="top" align="left">O-5TMS,MEOX1</td>
<td valign="top" align="left">103</td>
</tr>
<tr>
<td valign="top" align="left">5-Oxoproline</td>
<td valign="top" align="left">21.276</td>
<td valign="top" align="left">O-2TMS</td>
<td valign="top" align="left">156</td>
<td valign="top" align="left">Mannopyranose</td>
<td valign="top" align="left">36.968</td>
<td valign="top" align="left">O-4TMS</td>
<td valign="top" align="left">204</td>
</tr>
<tr>
<td valign="top" align="left">Aspartic acid</td>
<td valign="top" align="left">21.328</td>
<td valign="top" align="left">O-3TMS</td>
<td valign="top" align="left">232</td>
<td valign="top" align="left">Fucose</td>
<td valign="top" align="left">37.747</td>
<td valign="top" align="left">O-4TMS</td>
<td valign="top" align="left">204</td>
</tr>
<tr>
<td valign="top" align="left">GABA</td>
<td valign="top" align="left">21.528</td>
<td valign="top" align="left">N,N,O-TMS</td>
<td valign="top" align="left">174</td>
<td valign="top" align="left">Glucuronic acid</td>
<td valign="top" align="left">31.323</td>
<td valign="top" align="left">O-3TMS</td>
<td valign="top" align="left">317</td>
</tr>
<tr>
<td valign="top" align="left">Lysine</td>
<td valign="top" align="left">21.611</td>
<td valign="top" align="left">N,N,O-TMS</td>
<td valign="top" align="left">174</td>
<td valign="top" align="left">Turanose</td>
<td valign="top" align="left">31.491</td>
<td valign="top" align="left">O-8TMS</td>
<td valign="top" align="left">361</td>
</tr>
<tr>
<td valign="top" align="left">Threonic acid</td>
<td valign="top" align="left">22.286</td>
<td valign="top" align="left">O-4TMS</td>
<td valign="top" align="left">292</td>
<td valign="top" align="left">Gluconic acid</td>
<td valign="top" align="left">31.59</td>
<td valign="top" align="left">O-6TMS</td>
<td valign="top" align="left">333</td>
</tr>
<tr>
<td valign="top" align="left">&#x03B1;-Ketoglutaric acid</td>
<td valign="top" align="left">22.666</td>
<td valign="top" align="left">O-2TMS,MEOX1</td>
<td valign="top" align="left">198</td>
<td valign="top" align="left">Palmitic acid</td>
<td valign="top" align="left">32.566</td>
<td valign="top" align="left">O-TMS</td>
<td valign="top" align="left">313</td>
</tr>
<tr>
<td valign="top" align="left">Glutamic acid</td>
<td valign="top" align="left">23.699</td>
<td valign="top" align="left">N,O,O-TMS</td>
<td valign="top" align="left">246</td>
<td valign="top" align="left">Oxaloacetic acid</td>
<td valign="top" align="left">32.701</td>
<td valign="top" align="left">O-3TMS</td>
<td valign="top" align="left">147</td>
</tr>
<tr>
<td valign="top" align="left">Lyxose</td>
<td valign="top" align="left">24.649</td>
<td valign="top" align="left">O-4TMS</td>
<td valign="top" align="left">103</td>
<td valign="top" align="left">Phosphoric acid</td>
<td valign="top" align="left">35.269</td>
<td valign="top" align="left">O-5TMS</td>
<td valign="top" align="left">357</td>
</tr>
<tr>
<td valign="top" align="left">Mucic acid</td>
<td valign="top" align="left">27.687</td>
<td valign="top" align="left">O-6TMS</td>
<td valign="top" align="left">333</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">Shikimic acid</td>
<td valign="top" align="left">27.912</td>
<td valign="top" align="left">O-4TMS</td>
<td valign="top" align="left">204</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">Citric acid</td>
<td valign="top" align="left">28.12</td>
<td valign="top" align="left">O-4TMS</td>
<td valign="top" align="left">273</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">Fructose</td>
<td valign="top" align="left">29.109</td>
<td valign="top" align="left">O-5TMS,MEOX1</td>
<td valign="top" align="left">307</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">Galactose</td>
<td valign="top" align="left">29.47</td>
<td valign="top" align="left">O-5TMS,MEOX1</td>
<td valign="top" align="left">319</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">Glucose</td>
<td valign="top" align="left">29.611</td>
<td valign="top" align="left">O-5TMS,MEOX1</td>
<td valign="top" align="left">319</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">Mannitol</td>
<td valign="top" align="left">30.236</td>
<td valign="top" align="left">O-6TMS</td>
<td valign="top" align="left">319</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left"></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>RT, retention time; m/z, mass to charge ratio; <sup>a</sup>Trimethylsilyl derivative(s), <sup>b</sup>Methoxime derivative(s).</italic></attrib>
</table-wrap-foot>
</table-wrap>
<p>Total content of organic acids, amino acids, sugars, and sugar alcohols were presented in <bold>Figure <xref ref-type="fig" rid="F3">3</xref></bold>. Under normal temperature, no effects of elevated CO<sub>2</sub> were detected on total content of organic acids, amino acids, sugars and sugar alcohols compared with ambient CO<sub>2</sub>. Under heat stress, elevated CO<sub>2</sub> resulted in significant increases in the content of organic acids, amino acids, sugars, and sugar alcohols by 52%, 2.79-fold, 29% and 30%, respectively (<bold>Figure <xref ref-type="fig" rid="F3">3</xref></bold>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>Effects of elevated CO<sub>2</sub> concentration on total content of organic acids <bold>(A)</bold>, amino acids <bold>(B)</bold>, sugars <bold>(C)</bold>, and sugar alcohols <bold>(D)</bold> in response to heat stress in bermudagrass. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively.</p></caption>
<graphic xlink:href="fpls-08-01506-g003.tif"/>
</fig>
<p>For organic acids, under heat stress, plants grown at elevated CO<sub>2</sub> exhibited significantly lower content of mucic acid, galacturonic acid, lactic acid, but higher content of pyruvic acid, &#x03B1;-ketoglutaric acid, citric acid, glyceric acid, pimelic acid, malic acid and threonic acid compared to those with ambient CO<sub>2</sub> (<bold>Figures <xref ref-type="fig" rid="F4">4A</xref>&#x2013;<xref ref-type="fig" rid="F4">C</xref></bold>). Plants exposed to elevated CO<sub>2</sub> had significantly lower content of pyruvic acid and &#x03B1;-ketoglutaric acid than those with ambient CO<sub>2</sub> under normal temperature (<bold>Figure <xref ref-type="fig" rid="F4">4B</xref></bold>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>Effects of elevated CO<sub>2</sub> concentration on organic acids in response to heat stress in bermudagrass. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively. <bold>(A)</bold> No changes under 30&#x2013;800 and down-regulation under 45&#x2013;800; <bold>(B)</bold> No changes under 30&#x2013;800 and up-regulation under 45&#x2013;800; <bold>(C)</bold> Down-regulation under 30&#x2013;800 and up-regulation under 45&#x2013;800. Columns marked with different letters presented the significant differences based on LSD values (<italic>P</italic> &#x2264; 0.05) among treatments.</p></caption>
<graphic xlink:href="fpls-08-01506-g004.tif"/>
</fig>
<p>For amino acids, under heat stress, the content of all amino acids were increased by elevated CO<sub>2</sub> except glycine compared with ambient CO<sub>2</sub> (<bold>Figure <xref ref-type="fig" rid="F5">5</xref></bold>). The content of alanine, GABA, and serine (<bold>Figure <xref ref-type="fig" rid="F5">5C</xref></bold>) was significantly lower and the content of aspartic acid, isoleucine, lysine and glutamic acid (<bold>Figure <xref ref-type="fig" rid="F5">5D</xref></bold>) was significantly higher in plants exposed to elevated CO<sub>2</sub> compared with ambient CO<sub>2</sub> treatments under normal temperature.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption><p>Effects of elevated CO<sub>2</sub> concentration on amino acids in response to heat stress in bermudagrass. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively. <bold>(A)</bold> No changes under 30&#x2013;800 and down-regulation under 45&#x2013;800; <bold>(B)</bold> No changes under 30&#x2013;800 and up-regulation under 45&#x2013;800; <bold>(C)</bold> Down-regulation under 30&#x2013;800 and up-regulation under 45&#x2013;800; <bold>(D)</bold> Up-regulation under both 30&#x2013;800 and 45&#x2013;800. Columns marked with different letters presented the significant differences based on LSD values (<italic>P</italic> &#x2264; 0.05) among treatments.</p></caption>
<graphic xlink:href="fpls-08-01506-g005.tif"/>
</fig>
<p>For sugars and sugar alcohols, the content of gentiobiose, gulose, lyxose (<bold>Figure <xref ref-type="fig" rid="F6">6A</xref></bold>), and myo-inositol (<bold>Figure <xref ref-type="fig" rid="F7">7</xref></bold>) was decreased while that of erythrose and glucopyranose (<bold>Figure <xref ref-type="fig" rid="F6">6B</xref></bold>) was increased by elevated CO<sub>2</sub> compared to plants grown at ambient CO<sub>2</sub> concentration under normal temperature. Under heat stress, 8 out of 18 sugars, and two sugar alcohols (mannitol and galactinol) exhibited increases in the content in plants exposed to elevated CO<sub>2</sub> compared with ambient CO<sub>2</sub> (<bold>Figures <xref ref-type="fig" rid="F6">6</xref></bold>, <bold><xref ref-type="fig" rid="F7">7</xref></bold>).</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption><p>Effects of elevated CO<sub>2</sub> concentration on sugars in response to heat stress in bermudagrass. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively. <bold>(A)</bold> Down-regulation or no changes under 30&#x2013;800 and down-regulation under 45&#x2013;800; <bold>(B)</bold> Up-regulation under both 30&#x2013;800 and 45&#x2013;800; <bold>(C)</bold> No changes under 30&#x2013;800 and up-regulation under 45&#x2013;800. Columns marked with different letters presented the significant differences based on LSD values (<italic>P</italic> &#x2264; 0.05) among treatments.</p></caption>
<graphic xlink:href="fpls-08-01506-g006.tif"/>
</fig>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption><p>Effects of elevated CO<sub>2</sub> concentration on sugar alcohols in response to heat stress in bermudagrass. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively. Columns marked with different letters presented the significant differences based on LSD values (<italic>P</italic> &#x2264; 0.05) among treatments.</p></caption>
<graphic xlink:href="fpls-08-01506-g007.tif"/>
</fig>
<p>Out of 53 identified metabolites, 43 were placed into the metabolic pathways associated with GABA shunt, TCA cycle, sugar and amino acid metabolism (<bold>Figure <xref ref-type="fig" rid="F8">8</xref></bold>). These 43 metabolites included 16 organic acids, 12 amino acids, 11 sugars and 4 sugar alcohols. Under heat stressed conditions, elevated CO<sub>2</sub> enhanced the accumulation of metabolites associated with GABA shunt, sugar and amino metabolisms.</p>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption><p>The metabolic pathways associated with differentially expressed metabolites. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively.</p></caption>
<graphic xlink:href="fpls-08-01506-g008.tif"/>
</fig>
</sec>
<sec><title>Proteomic Responses to Elevated CO<sub>2</sub></title>
<p>A total of 70 and 53 protein spots were differentially expressed in leaves of bermudagrass due to elevated CO<sub>2</sub> compared to those at ambient CO<sub>2</sub> under normal and high temperature, respectively (<bold>Figure <xref ref-type="fig" rid="F9">9</xref></bold> and <bold>Table <xref ref-type="table" rid="T2">2</xref></bold>).</p>
<fig id="F9" position="float">
<label>FIGURE 9</label>
<caption><p>Representative gels of 2-D with differentially expressed proteins identified in bermudagrass grown under normal temperature <bold>(A)</bold> and heat stress <bold>(B)</bold> at 28 days of treatments. Labels of spots in each gel were consistent with <bold>Table <xref ref-type="table" rid="T2">2</xref></bold>.</p></caption>
<graphic xlink:href="fpls-08-01506-g009.tif"/>
</fig>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>Differentially expressed proteins in response to different CO<sub>2</sub> concentrations and temperatures by comparison between elevated CO<sub>2</sub> and ambient CO<sub>2</sub> in leaves of bermudagrass at 28 days of treatments.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left">Spot no.</th>
<th valign="top" align="left">Unipro. ID</th>
<th valign="top" align="left">Pro. name [species]</th>
<th valign="top" align="left">pI</th>
<th valign="top" align="left">MW</th>
<th valign="top" align="left">PM</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">n38</td>
<td valign="top" align="left">A0A0A9D510</td>
<td valign="top" align="left">Uncharacterized protein [<italic>Arundo donax</italic>]</td>
<td valign="top" align="left">11.472786</td>
<td valign="top" align="left">20592.018</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n196</td>
<td valign="top" align="left">C0PFV4</td>
<td valign="top" align="left">Cytokinin inducible protease1 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.23571</td>
<td valign="top" align="left">102041</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n211</td>
<td valign="top" align="left">A0A0A9R3Q6</td>
<td valign="top" align="left">Uncharacterized protein [<italic>Arundo donax</italic>]</td>
<td valign="top" align="left">9.6397934</td>
<td valign="top" align="left">10972.589</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n238</td>
<td valign="top" align="left">C1K9J1</td>
<td valign="top" align="left">Heat shock protein 90 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.004387</td>
<td valign="top" align="left">80090</td>
<td valign="top" align="left">5</td>
</tr>
<tr>
<td valign="top" align="left">n248</td>
<td valign="top" align="left">Q8W0Q7</td>
<td valign="top" align="left">Methionine synthase protein [<italic>Sorghum bicolor</italic>]</td>
<td valign="top" align="left">5.930443</td>
<td valign="top" align="left">83788.72</td>
<td valign="top" align="left">6</td>
</tr>
<tr>
<td valign="top" align="left">n250</td>
<td valign="top" align="left">Q8W0Q7</td>
<td valign="top" align="left">Methionine synthase protein [<italic>Sorghum bicolor</italic>]</td>
<td valign="top" align="left">5.930443</td>
<td valign="top" align="left">83788.72</td>
<td valign="top" align="left">6</td>
</tr>
<tr>
<td valign="top" align="left">n300</td>
<td valign="top" align="left">X4Z319</td>
<td valign="top" align="left">Heat shock protein 70 [<italic>Saccharum hybrid cultivar</italic>]</td>
<td valign="top" align="left">5.127754</td>
<td valign="top" align="left">71034.47</td>
<td valign="top" align="left">7</td>
</tr>
<tr>
<td valign="top" align="left">n303</td>
<td valign="top" align="left">A4ZYQ0</td>
<td valign="top" align="left">Chloroplast heat shock protein 70 [<italic>Pennisetum americanum</italic>]</td>
<td valign="top" align="left">5.233284</td>
<td valign="top" align="left">73010.5</td>
<td valign="top" align="left">5</td>
</tr>
<tr>
<td valign="top" align="left">n311</td>
<td valign="top" align="left">K4AEH8</td>
<td valign="top" align="left">Glutathione S-transferase [<italic>Arabidopsis thaliana</italic>]</td>
<td valign="top" align="left">5.5051193</td>
<td valign="top" align="left">25757.487</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n324</td>
<td valign="top" align="left">Q7SIC9</td>
<td valign="top" align="left">Transketolase, chloroplastic [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.466347</td>
<td valign="top" align="left">72993.41</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n382</td>
<td valign="top" align="left">K3XFX0</td>
<td valign="top" align="left">Phosphoglycerate mutase [<italic>Arabidopsis thaliana</italic>]</td>
<td valign="top" align="left">5.7386093</td>
<td valign="top" align="left">63645.472</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n411</td>
<td valign="top" align="left">A0A096PMM2</td>
<td valign="top" align="left">Chaperonin-60 alpha [<italic>Arabidopsis thaliana</italic>]</td>
<td valign="top" align="left">5.0534134</td>
<td valign="top" align="left">63186.397</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n417</td>
<td valign="top" align="left">C0PHP3</td>
<td valign="top" align="left">Putative TCP-1/cpn60 chaperonin family protein [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">4.750603</td>
<td valign="top" align="left">44074.17</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n447</td>
<td valign="top" align="left">A0A059PYZ3</td>
<td valign="top" align="left">Catalase [<italic>Saccharum hybrid cultivar</italic>]</td>
<td valign="top" align="left">6.5794296</td>
<td valign="top" align="left">56439.851</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n476</td>
<td valign="top" align="left">A0A059Q9W7</td>
<td valign="top" align="left">ATP synthase subunit alpha, chloroplastic [<italic>Neyraudia reynaudiana</italic>]</td>
<td valign="top" align="left">5.7230148</td>
<td valign="top" align="left">55674.804</td>
<td valign="top" align="left">7</td>
</tr>
<tr>
<td valign="top" align="left">n486</td>
<td valign="top" align="left">A0A024GW45</td>
<td valign="top" align="left">ATP synthase subunit alpha, chloroplastic [<italic>Lecomtella madagascariensis</italic>]</td>
<td valign="top" align="left">5.865181</td>
<td valign="top" align="left">55704.87</td>
<td valign="top" align="left">6</td>
</tr>
<tr>
<td valign="top" align="left">n522</td>
<td valign="top" align="left">K3Z2G6</td>
<td valign="top" align="left">ATP synthase subunit alpha [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">5.7027206</td>
<td valign="top" align="left">55314.391</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n525</td>
<td valign="top" align="left">A0A024GW49</td>
<td valign="top" align="left">ATP synthase subunit beta, chloroplastic [<italic>Lecomtella madagascariensis</italic>]</td>
<td valign="top" align="left">5.306984</td>
<td valign="top" align="left">53954.82</td>
<td valign="top" align="left">6</td>
</tr>
<tr>
<td valign="top" align="left">n530</td>
<td valign="top" align="left">A0A059Q9X1</td>
<td valign="top" align="left">ATP synthase subunit beta, chloroplastic [<italic>Neyraudia reynaudiana</italic>]</td>
<td valign="top" align="left">5.3016434</td>
<td valign="top" align="left">53997.843</td>
<td valign="top" align="left">8</td>
</tr>
<tr>
<td valign="top" align="left">n537</td>
<td valign="top" align="left">A0A024BLC0</td>
<td valign="top" align="left">ATP synthase subunit beta [<italic>Pennisetum americanum</italic>]</td>
<td valign="top" align="left">5.3069839</td>
<td valign="top" align="left">53910.765</td>
<td valign="top" align="left">7</td>
</tr>
<tr>
<td valign="top" align="left">n551</td>
<td valign="top" align="left">A0A0G2UKF5</td>
<td valign="top" align="left">Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [<italic>Orinus thoroldii</italic>]</td>
<td valign="top" align="left">6.2336807</td>
<td valign="top" align="left">51506.568</td>
<td valign="top" align="left">6</td>
</tr>
<tr>
<td valign="top" align="left">n561</td>
<td valign="top" align="left">A0A059Q9V4</td>
<td valign="top" align="left">Ribulose-1,5-bisphosphate carboxylase/oxygenas [<italic>Neyraudia reynaudiana</italic>]</td>
<td valign="top" align="left">6.0360794</td>
<td valign="top" align="left">52724.927</td>
<td valign="top" align="left">6</td>
</tr>
<tr>
<td valign="top" align="left">n574</td>
<td valign="top" align="left">A0A0U5GUY4</td>
<td valign="top" align="left">Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [<italic>Neostapfiella perrieri</italic>]</td>
<td valign="top" align="left">6.3398514</td>
<td valign="top" align="left">49871.655</td>
<td valign="top" align="left">7</td>
</tr>
<tr>
<td valign="top" align="left">n598</td>
<td valign="top" align="left">A0A059Q008</td>
<td valign="top" align="left">Elongation factor 1-alpha [<italic>Saccharum hybrid cultivar</italic>]</td>
<td valign="top" align="left">9.1394882</td>
<td valign="top" align="left">49276.993</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n616</td>
<td valign="top" align="left">C0P699</td>
<td valign="top" align="left">Elongation factor Tu [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.1954422</td>
<td valign="top" align="left">50776.346</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n619</td>
<td valign="top" align="left">A0A077JG84</td>
<td valign="top" align="left">S-adenosylmethionine synthase [<italic>Andropogon virginicus</italic>]</td>
<td valign="top" align="left">5.5640793</td>
<td valign="top" align="left">43045.785</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n660</td>
<td valign="top" align="left">K4AA01</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.1007004</td>
<td valign="top" align="left">46993.46</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n666</td>
<td valign="top" align="left">K4AA01</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.1007004</td>
<td valign="top" align="left">46993.46</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n673</td>
<td valign="top" align="left">K3Z5U9</td>
<td valign="top" align="left">Phosphoglycerate kinase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.0720749</td>
<td valign="top" align="left">49686.217</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n675</td>
<td valign="top" align="left">K3Z5U9</td>
<td valign="top" align="left">Phosphoglycerate kinase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.072075</td>
<td valign="top" align="left">49686.22</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n678</td>
<td valign="top" align="left">K3XH82</td>
<td valign="top" align="left">Phosphoglycerate kinase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">8.4882584</td>
<td valign="top" align="left">50239.992</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n705</td>
<td valign="top" align="left">B6T2L2</td>
<td valign="top" align="left">Sedoheptulose-1,7-bisphosphatase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.074532</td>
<td valign="top" align="left">41816.7</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n706</td>
<td valign="top" align="left">K3YTN2</td>
<td valign="top" align="left">Glutamine synthetase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">5.5121689</td>
<td valign="top" align="left">39158.048</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n736</td>
<td valign="top" align="left">K3XHJ0</td>
<td valign="top" align="left">Aspartate aminotransferase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">8.8027115</td>
<td valign="top" align="left">50210.455</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n760</td>
<td valign="top" align="left">K3XHJ0</td>
<td valign="top" align="left">Aspartate aminotransferase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">8.8027115</td>
<td valign="top" align="left">50210.455</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n762</td>
<td valign="top" align="left">A0A096TAE3</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">7.0012283</td>
<td valign="top" align="left">42856.79</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n769</td>
<td valign="top" align="left">P0C1M0</td>
<td valign="top" align="left">ATP synthase subunit gamma, chloroplastic [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">8.4372025</td>
<td valign="top" align="left">39789.807</td>
<td valign="top" align="left">5</td>
</tr>
<tr>
<td valign="top" align="left">n770</td>
<td valign="top" align="left">A0A096TAE3</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">7.0012283</td>
<td valign="top" align="left">42856.79</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n776</td>
<td valign="top" align="left">K3YS38</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">9.3867569</td>
<td valign="top" align="left">51746.214</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n781</td>
<td valign="top" align="left">K3ZIS7</td>
<td valign="top" align="left">Fructose-bisphosphate aldolase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.2657242</td>
<td valign="top" align="left">42104.979</td>
<td valign="top" align="left">5</td>
</tr>
<tr>
<td valign="top" align="left">n784</td>
<td valign="top" align="left">C<sub>4</sub>JBS8</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.459267</td>
<td valign="top" align="left">36494.67</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n793</td>
<td valign="top" align="left">C0PD30</td>
<td valign="top" align="left">Fructose-bisphosphate aldolase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.3739243</td>
<td valign="top" align="left">38146.552</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n794</td>
<td valign="top" align="left">K3ZIS7</td>
<td valign="top" align="left">Fructose-bisphosphate aldolase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.2657242</td>
<td valign="top" align="left">42104.979</td>
<td valign="top" align="left">5</td>
</tr>
<tr>
<td valign="top" align="left">n795</td>
<td valign="top" align="left">A0A096TAE3</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">7.0012283</td>
<td valign="top" align="left">42856.79</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n808</td>
<td valign="top" align="left">K3YIG5</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.9726028</td>
<td valign="top" align="left">36597.831</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n814</td>
<td valign="top" align="left">A0A140GYJ8</td>
<td valign="top" align="left">Cysteine synthase C1 [<italic>Arabidopsis thaliana</italic>]</td>
<td valign="top" align="left">7.7287216</td>
<td valign="top" align="left">40549.937</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n816</td>
<td valign="top" align="left">K3YIG5</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.9726028</td>
<td valign="top" align="left">36597.831</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n827</td>
<td valign="top" align="left">K3Z7Q4</td>
<td valign="top" align="left">Malate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">8.229454</td>
<td valign="top" align="left">35523.89</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n865</td>
<td valign="top" align="left">B6TEW2</td>
<td valign="top" align="left">Ferredoxin&#x2013;NADP reductase, leaf isozyme [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">8.372902</td>
<td valign="top" align="left">37506.14</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n941</td>
<td valign="top" align="left">B4F9R9</td>
<td valign="top" align="left">Oxygen-evolving enhancer protein 1 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.539513</td>
<td valign="top" align="left">35079.65</td>
<td valign="top" align="left">5</td>
</tr>
<tr>
<td valign="top" align="left">n942</td>
<td valign="top" align="left">B4F9R9</td>
<td valign="top" align="left">Oxygen-evolving enhancer protein 1 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.539513</td>
<td valign="top" align="left">35079.65</td>
<td valign="top" align="left">5</td>
</tr>
<tr>
<td valign="top" align="left">n968</td>
<td valign="top" align="left">B6SQQ0</td>
<td valign="top" align="left">Inorganic pyrophosphatase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.788383</td>
<td valign="top" align="left">31736.97</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n1019</td>
<td valign="top" align="left">J9QDZ6</td>
<td valign="top" align="left">Ascorbate peroxidase [<italic>Saccharum</italic> hybrid cultivar]</td>
<td valign="top" align="left">5.176033</td>
<td valign="top" align="left">27159.67</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n1040</td>
<td valign="top" align="left">B4FT85</td>
<td valign="top" align="left">Isochorismate synthase 1 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">7.855827</td>
<td valign="top" align="left">29470.34</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n1066</td>
<td valign="top" align="left">B4FNR1</td>
<td valign="top" align="left">Chlorophyll a-b binding protein 2 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.140251</td>
<td valign="top" align="left">27815.74</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n1073</td>
<td valign="top" align="left">B6UG30</td>
<td valign="top" align="left">Triosephosphate isomerase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.139687</td>
<td valign="top" align="left">32392.87</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n1076</td>
<td valign="top" align="left">B4FNR1</td>
<td valign="top" align="left">Chlorophyll a-b binding protein 2 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.140251</td>
<td valign="top" align="left">27815.74</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n1117</td>
<td valign="top" align="left">B6SS26</td>
<td valign="top" align="left">Adenylate kinase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.790276</td>
<td valign="top" align="left">31139.68</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n1118</td>
<td valign="top" align="left">K3YIW7</td>
<td valign="top" align="left">Adenosine monophosphate kinase [<italic>Arabidopsis thaliana</italic>]</td>
<td valign="top" align="left">7.6875992</td>
<td valign="top" align="left">31556.069</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n1127</td>
<td valign="top" align="left">B6SUC<sub>4</sub></td>
<td valign="top" align="left">Chlorophyll a-b binding protein 8 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">8.940819</td>
<td valign="top" align="left">28984.34</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n1173</td>
<td valign="top" align="left">C<sub>4</sub>J9M7</td>
<td valign="top" align="left">2-cys peroxiredoxin BAS1 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.807823</td>
<td valign="top" align="left">28272.36</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n1195</td>
<td valign="top" align="left">B6SSN3</td>
<td valign="top" align="left">Chlorophyll a-b binding protein 6A [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.214775</td>
<td valign="top" align="left">26309.18</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n1364</td>
<td valign="top" align="left">B4F9N4</td>
<td valign="top" align="left">Cytochrome b6-f complex iron-sulfur subunit [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">8.5790482</td>
<td valign="top" align="left">24054.508</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">n1403</td>
<td valign="top" align="left">A0A0A6Z9F5</td>
<td valign="top" align="left">Photosystem I reaction center subunit II [<italic>Saccharum hybrid cultivar</italic>]</td>
<td valign="top" align="left">9.913979</td>
<td valign="top" align="left">21844.1</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n1410</td>
<td valign="top" align="left">A0A0A6Z9F5</td>
<td valign="top" align="left">Photosystem I reaction center subunit II [<italic>Saccharum hybrid cultivar</italic>]</td>
<td valign="top" align="left">9.913979</td>
<td valign="top" align="left">21844.1</td>
<td valign="top" align="left">5</td>
</tr>
<tr>
<td valign="top" align="left">n1473</td>
<td valign="top" align="left">B6SPC1</td>
<td valign="top" align="left">Photosystem I reaction center subunit IV A [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">9.786659</td>
<td valign="top" align="left">14893.9</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n1507</td>
<td valign="top" align="left">A0A024GWT9</td>
<td valign="top" align="left">ATP synthase epsilon chain, chloroplastic [<italic>Lecomtella madagascariensis</italic>]</td>
<td valign="top" align="left">5.027992</td>
<td valign="top" align="left">15245.6</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n1511</td>
<td valign="top" align="left">B4G259</td>
<td valign="top" align="left">Photosystem II Subunit Q [<italic>Arabidopsis thaliana</italic>]</td>
<td valign="top" align="left">9.771919</td>
<td valign="top" align="left">23132.72</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">n1650</td>
<td valign="top" align="left">A0A0A9IAK2</td>
<td valign="top" align="left">Ribulose bisphosphate carboxylase small chain [<italic>Arundo donax</italic>]</td>
<td valign="top" align="left">6.306633</td>
<td valign="top" align="left">14832.18</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">n1802</td>
<td valign="top" align="left">O65101</td>
<td valign="top" align="left">Photosystem I reaction center subunit VI, chloroplastic [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">10.09834</td>
<td valign="top" align="left">14929.3</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h405</td>
<td valign="top" align="left">B5AMJ8</td>
<td valign="top" align="left">Alpha-1,4 glucan phosphorylase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.8560715</td>
<td valign="top" align="left">94452.824</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h481</td>
<td valign="top" align="left">Q8W0Q7</td>
<td valign="top" align="left">Methionine synthase protein [<italic>Sorghum bicolor</italic>]</td>
<td valign="top" align="left">5.9304428</td>
<td valign="top" align="left">83788.725</td>
<td valign="top" align="left">6</td>
</tr>
<tr>
<td valign="top" align="left">h634</td>
<td valign="top" align="left">A0A096QX48</td>
<td valign="top" align="left">Succinate dehydrogenase [ubiquinone] flavoprotein subunit [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.0423813</td>
<td valign="top" align="left">63934.221</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h712</td>
<td valign="top" align="left">A0A096PMM2</td>
<td valign="top" align="left">CPN60A [<italic>Arabidopsis thaliana</italic>]</td>
<td valign="top" align="left">5.0534134</td>
<td valign="top" align="left">63186.397</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h716</td>
<td valign="top" align="left">A0A096RAX3</td>
<td valign="top" align="left">Malic enzyme [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">8.0004501</td>
<td valign="top" align="left">67809.036</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h724</td>
<td valign="top" align="left">A0A096RAX3</td>
<td valign="top" align="left">Malic enzyme [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">8.0004501</td>
<td valign="top" align="left">67809.036</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">h730</td>
<td valign="top" align="left">C0PHP3</td>
<td valign="top" align="left">Putative TCP-1/cpn60 chaperonin family protein [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">4.7506027</td>
<td valign="top" align="left">44074.173</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">h736</td>
<td valign="top" align="left">C0PHP3</td>
<td valign="top" align="left">Putative TCP-1/cpn60 chaperonin family protein [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.4693375</td>
<td valign="top" align="left">64030.34</td>
<td valign="top" align="left">5</td>
</tr>
<tr>
<td valign="top" align="left">h743</td>
<td valign="top" align="left">A0A059PYZ3</td>
<td valign="top" align="left">Catalase [<italic>Saccharum</italic> hybrid cultivar R570]</td>
<td valign="top" align="left">6.5794296</td>
<td valign="top" align="left">56439.851</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h826</td>
<td valign="top" align="left">A0A024GW49</td>
<td valign="top" align="left">ATP synthase subunit beta, chloroplastic [<italic>Lecomtella madagascariensis</italic>]</td>
<td valign="top" align="left">5.3069839</td>
<td valign="top" align="left">53954.82</td>
<td valign="top" align="left">6</td>
</tr>
<tr>
<td valign="top" align="left">h839</td>
<td valign="top" align="left">C5Z2J6</td>
<td valign="top" align="left">Catalase [<italic>Sorghum bicolor</italic>]</td>
<td valign="top" align="left">6.6157455</td>
<td valign="top" align="left">56841.332</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h843</td>
<td valign="top" align="left">A0A0G2UKF5</td>
<td valign="top" align="left">Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [<italic>Orinus thoroldii</italic>]</td>
<td valign="top" align="left">6.2336807</td>
<td valign="top" align="left">51506.568</td>
<td valign="top" align="left">6</td>
</tr>
<tr>
<td valign="top" align="left">h844</td>
<td valign="top" align="left">C5Z2J6</td>
<td valign="top" align="left">Catalase [Sorghum bicolor]</td>
<td valign="top" align="left">6.6157455</td>
<td valign="top" align="left">56841.332</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h845</td>
<td valign="top" align="left">A0A059Q0R4</td>
<td valign="top" align="left">NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [<italic>Saccharum</italic> hybrid cultivar R570]</td>
<td valign="top" align="left">6.8003159</td>
<td valign="top" align="left">53254.56</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h903</td>
<td valign="top" align="left">A0A059Q008</td>
<td valign="top" align="left">Elongation factor 1-alpha [<italic>Saccharum</italic> hybrid cultivar R570]</td>
<td valign="top" align="left">9.1394882</td>
<td valign="top" align="left">49276.993</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h951</td>
<td valign="top" align="left">A0A077JG84</td>
<td valign="top" align="left">S-adenosylmethionine synthase [<italic>Andropogon virginicus</italic>]</td>
<td valign="top" align="left">5.5640793</td>
<td valign="top" align="left">43045.785</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">h964</td>
<td valign="top" align="left">K3ZIK0</td>
<td valign="top" align="left">Rubisco activase [<italic>Arabidopsis thaliana</italic>]</td>
<td valign="top" align="left">6.1982193</td>
<td valign="top" align="left">47531.255</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">h1015</td>
<td valign="top" align="left">K4AA01</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.1007004</td>
<td valign="top" align="left">46993.46</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1022</td>
<td valign="top" align="left">K4AA01</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.1007004</td>
<td valign="top" align="left">46993.46</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1067</td>
<td valign="top" align="left">K3XH82</td>
<td valign="top" align="left">Phosphoglycerate kinase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">8.4882584</td>
<td valign="top" align="left">50239.99</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1150</td>
<td valign="top" align="left">A0A096TAE3</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">7.0012283</td>
<td valign="top" align="left">42856.79</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1154</td>
<td valign="top" align="left">B6T2L2</td>
<td valign="top" align="left">Sedoheptulose-1,7-bisphosphatase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.0745316</td>
<td valign="top" align="left">41816.7</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">h1157</td>
<td valign="top" align="left">B6T2L2</td>
<td valign="top" align="left">Sedoheptulose-1,7-bisphosphatase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.0745316</td>
<td valign="top" align="left">41816.7</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1162</td>
<td valign="top" align="left">A0A096TAE3</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">7.0012283</td>
<td valign="top" align="left">42856.79</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1164</td>
<td valign="top" align="left">K3YS38</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">9.3867569</td>
<td valign="top" align="left">51746.214</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1167</td>
<td valign="top" align="left">K3YIG5</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.9726028</td>
<td valign="top" align="left">36597.831</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1176</td>
<td valign="top" align="left">P0C1M0</td>
<td valign="top" align="left">ATP synthase subunit gamma, chloroplastic [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">8.4372025</td>
<td valign="top" align="left">39789.807</td>
<td valign="top" align="left">5</td>
</tr>
<tr>
<td valign="top" align="left">h1182</td>
<td valign="top" align="left">K3YIG5</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.9726028</td>
<td valign="top" align="left">36597.831</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1192</td>
<td valign="top" align="left">A0A096TAE3</td>
<td valign="top" align="left">Glyceraldehyde-3-phosphate dehydrogenase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">7.0012283</td>
<td valign="top" align="left">42856.79</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1211</td>
<td valign="top" align="left">K3ZIS7</td>
<td valign="top" align="left">Fructose-bisphosphate aldolase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">6.2657242</td>
<td valign="top" align="left">42104.979</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1230</td>
<td valign="top" align="left">A0A140GYJ8</td>
<td valign="top" align="left">Cysteine synthase C1 [<italic>Arabidopsis thaliana</italic>]</td>
<td valign="top" align="left">7.7287216</td>
<td valign="top" align="left">40549.937</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1233</td>
<td valign="top" align="left">C0PD30</td>
<td valign="top" align="left">Fructose-bisphosphate aldolase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.3739243</td>
<td valign="top" align="left">38146.552</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">h1237</td>
<td valign="top" align="left">K3Z7Q4</td>
<td valign="top" align="left">Malate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">8.229454</td>
<td valign="top" align="left">35523.89</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1242</td>
<td valign="top" align="left">K3Z7Q4</td>
<td valign="top" align="left">Malate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">8.229454</td>
<td valign="top" align="left">35523.89</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1258</td>
<td valign="top" align="left">K3XJN7</td>
<td valign="top" align="left">Malate dehydrogenase [<italic>Setaria italica</italic>]</td>
<td valign="top" align="left">7.6717911</td>
<td valign="top" align="left">35479.854</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1303</td>
<td valign="top" align="left">B6TEW2</td>
<td valign="top" align="left">Ferredoxin&#x2013;NADP reductase, leaf isozyme [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">8.3729019</td>
<td valign="top" align="left">37506.14</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1384</td>
<td valign="top" align="left">C0PK05</td>
<td valign="top" align="left">Lactoylglutathione lyase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.8257675</td>
<td valign="top" align="left">32344.8</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1389</td>
<td valign="top" align="left">C0PK05</td>
<td valign="top" align="left">Lactoylglutathione lyase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.8257675</td>
<td valign="top" align="left">32344.804</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1398</td>
<td valign="top" align="left">B4F9R9</td>
<td valign="top" align="left">Oxygen-evolving enhancer protein 1 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.5395126</td>
<td valign="top" align="left">35079.65</td>
<td valign="top" align="left">5</td>
</tr>
<tr>
<td valign="top" align="left">h1438</td>
<td valign="top" align="left">K3YUP7</td>
<td valign="top" align="left">Pyrophosphorylase 6 [<italic>Arabidopsis thaliana</italic>]</td>
<td valign="top" align="left">5.7826157</td>
<td valign="top" align="left">31748.944</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1504</td>
<td valign="top" align="left">B4FT85</td>
<td valign="top" align="left">Isochorismate synthase 1 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">7.8558273</td>
<td valign="top" align="left">29470.34</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1528</td>
<td valign="top" align="left">K3Y8C6</td>
<td valign="top" align="left">Ascorbate peroxidase 4 [<italic>Arabidopsis thaliana</italic>]</td>
<td valign="top" align="left">8.1654739</td>
<td valign="top" align="left">38125.019</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1533</td>
<td valign="top" align="left">B6TVL8</td>
<td valign="top" align="left">APx2-Cytosolic Ascorbate Peroxidase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.2829514</td>
<td valign="top" align="left">27201.75</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1584</td>
<td valign="top" align="left">B4FQW0</td>
<td valign="top" align="left">Stem-specific protein TSJT1 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">5.233284</td>
<td valign="top" align="left">24666.251</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h1586</td>
<td valign="top" align="left">B6SS26</td>
<td valign="top" align="left">Adenylate kinase [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">6.7902756</td>
<td valign="top" align="left">31139.68</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">h1655</td>
<td valign="top" align="left">B6SUC<sub>4</sub></td>
<td valign="top" align="left">Chlorophyll a-b binding protein 8 [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">8.9408188</td>
<td valign="top" align="left">28984.34</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1854</td>
<td valign="top" align="left">A0A0B4J349</td>
<td valign="top" align="left">Peptidyl-prolyl cis-trans isomerase[<italic>Zea mays</italic>]</td>
<td valign="top" align="left">9.4011765</td>
<td valign="top" align="left">26443.981</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1900</td>
<td valign="top" align="left">B4F9N4</td>
<td valign="top" align="left">Cytochrome b6-f complex iron-sulfur subunit [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">8.5790482</td>
<td valign="top" align="left">24054.508</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h1905</td>
<td valign="top" align="left">A0A0A6Z9F5</td>
<td valign="top" align="left">Photosystem I reaction center subunit II [<italic>Saccharum hybrid cultivar</italic>]</td>
<td valign="top" align="left">9.9139786</td>
<td valign="top" align="left">21844.1</td>
<td valign="top" align="left">4</td>
</tr>
<tr>
<td valign="top" align="left">h1930</td>
<td valign="top" align="left">B4F9N4</td>
<td valign="top" align="left">Cytochrome b6-f complex iron-sulfur subunit [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">8.5790482</td>
<td valign="top" align="left">24054.508</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h2067</td>
<td valign="top" align="left">B6SPC1</td>
<td valign="top" align="left">Photosystem I reaction center subunit IV A [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">9.7866592</td>
<td valign="top" align="left">14893.9</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left">h2087</td>
<td valign="top" align="left">B6ST36</td>
<td valign="top" align="left">Chloroplast oxygen-evolving complex/thylakoid lumenal 25.6kDa protein [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">9.3444595</td>
<td valign="top" align="left">26165.12</td>
<td valign="top" align="left">2</td>
</tr>
<tr>
<td valign="top" align="left">h2563</td>
<td valign="top" align="left">B4FAC2</td>
<td valign="top" align="left">Photosystem I reaction center subunit N [<italic>Zea mays</italic>]</td>
<td valign="top" align="left">9.2116928</td>
<td valign="top" align="left">15485.72</td>
<td valign="top" align="left">3</td>
</tr>
<tr>
<td valign="top" align="left"></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>n, normal temperature (30&#x00B0;C); h, heat stress (45&#x00B0;C); pI, isoelectric point; MW (kDa), molecular weight; PW, the number of unique peptides matched.</italic></attrib>
</table-wrap-foot>
</table-wrap>
<p>Those 70 proteins up- or down-regulated by elevated CO<sub>2</sub> under normal temperature were found in plastid (67.1%), cytosol (18.6%), mitochondrion (5.7%), peroxisome (4.3%), cytosol and plasma membrane (1.4%) and unknown locations (2.9%) (<bold>Figure <xref ref-type="fig" rid="F10">10</xref></bold>). GO category enrichment showed that 70 proteins participated in various biological processes (metabolic process, response to stress, generation of precursor metabolites and energy, photosynthesis, carbohydrate metabolic process, glycolysis, protein folding, and carbohydrate biosynthetic process), molecular functions (catalytic activity and oxidoreductase activity) and cellular components (intracellular, cell, cytoplasm, organelle, plastid, chloroplast, membrane, protein complex, thylakoid, mitochondrion, envelope, plastoglobule, cytosol, stromule, and photosystem) (<bold>Figure <xref ref-type="fig" rid="F11">11A</xref></bold>).</p>
<fig id="F10" position="float">
<label>FIGURE 10</label>
<caption><p>Subcellular location of identified proteins in response to different CO<sub>2</sub> concentrations and temperatures. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively.</p></caption>
<graphic xlink:href="fpls-08-01506-g010.tif"/>
</fig>
<fig id="F11" position="float">
<label>FIGURE 11</label>
<caption><p>Cluster analysis from gene ontology (GO) analysis of differentially expressed proteins in response to different CO<sub>2</sub> concentrations under normal temperature <bold>(A)</bold> and heat stress <bold>(B)</bold> in leaves of bermudagrass. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively. BP, biological process; MF, molecular function; CC, cellular component.</p></caption>
<graphic xlink:href="fpls-08-01506-g011.tif"/>
</fig>
<p>The majority of these 53 proteins up- or down-regulated by elevated CO<sub>2</sub> under heat stress mainly distributed in plastid (62.3%) followed by cytosol (17%) (<bold>Figure <xref ref-type="fig" rid="F10">10</xref></bold>). GO category enrichment indicated that the biological processes regulated by CO<sub>2</sub> included cellular metabolic process, responses to stress, response to abiotic stimulus, generation of precursor metabolites and energy, photosynthesis, response to inorganic substance, electron transport chain, carbohydrate metabolism, molecular functions (catalytic activity and oxidoreductase activity) and cellular components (cytoplasm, intracellular, cell, organelle, plastid, chloroplast, membrane, mitochondrion, thylakoid, protein complex, envelope, photosystem, and stromule) (<bold>Figure <xref ref-type="fig" rid="F11">11B</xref></bold>).</p>
<p>Based on the Venn analysis, 18 and 19 differential proteins were up-regulated by elevated CO<sub>2</sub> only under either normal temperature or heat stress, respectively (<bold>Figure <xref ref-type="fig" rid="F12">12A</xref></bold>). Elevated CO<sub>2</sub> caused 12 proteins to be up-regulated regardless of temperature (<bold>Figure <xref ref-type="fig" rid="F12">12A</xref></bold>). A total of 40 proteins were down-regulated by elevated CO<sub>2</sub> under normal and high temperature (<bold>Figure <xref ref-type="fig" rid="F12">12B</xref></bold>). There were 27 proteins down-regulated under normal temperature and 7 proteins down-regulated under heat stress alone due to elevated CO<sub>2</sub> treatment. The differentially expressed proteins in responses to elevated CO<sub>2</sub> and heat stress were classified into different functional categories (<bold>Figure <xref ref-type="fig" rid="F13">13</xref></bold>).</p>
<fig id="F12" position="float">
<label>FIGURE 12</label>
<caption><p>Venn analysis of up-regulated proteins <bold>(A)</bold> and down-regulated proteins <bold>(B)</bold> identified in bermudagrass at 28 days of treatments. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively.</p></caption>
<graphic xlink:href="fpls-08-01506-g012.tif"/>
</fig>
<fig id="F13" position="float">
<label>FIGURE 13</label>
<caption><p>Functional classification of CO<sub>2</sub> responsive proteins identified in bermudagrass grown under normal temperature <bold>(A)</bold> and heat stress <bold>(B)</bold> at 28 days of treatments.</p></caption>
<graphic xlink:href="fpls-08-01506-g013.tif"/>
</fig>
<p>Under normal temperature condition, the differential proteins caused by elevated CO<sub>2</sub> compared with ambient CO<sub>2</sub> were involved in photosynthesis (55.7%), followed by amino acid metabolism (8.6%), glycolysis (7.1%), protein synthesis and degradation (4.3%), stress defense (8.6%), nucleotide metabolism (4.3%), and the remaining (11.4%) including those unknown functions (<bold>Figure <xref ref-type="fig" rid="F13">13A</xref></bold>). For proteins related to photosynthesis, significant increases in the relative fold change were found in ATP synthase subunit (ATPA, n476) by 1.5-fold, rubisco large subunit (RBCL, n551, n561, n574) by 1.1- to 2.6-fold, glyceraldehyde-3-phosphate dehydrogenase (GAPDH, n660, n762, n770, n795) by 1.1- to 1.4-fold, ATP synthase subunit gamma (ATPC, n769) by 1.6-fold, fructose-bisphosphate aldolase (FBA, n781) by 1.4-fold, ferredoxin-NADP reductase (FNR, n865) by 1.3-fold, oxygen-evolving enhancer protein (OEE, n941) by 1.6-fold, chlorophyll a-b binding protein (LHC, n1066, n1076, n1127, n1195) by 1.3- to 2.4-fold, cytochrome b6-f complex iron-sulfur subunit (PGR, n1364) by 2.0-fold, rubisco small chain (RBCS, n1650) by 1.5-fold (<bold>Figure <xref ref-type="fig" rid="F14">14A</xref></bold>). Other 21 proteins involved in photosynthesis [(chaperonin-60 alpha, CPN60A), n411 by 1.14-fold; (cpn60 chaperonin family protein, CPN60B), n417 by 1.52-fold; n486, ATPA by 1.53-fold; n525, n530 and n537, ATPB by 1.17- to 1.23-fold; n666, GAPDH by 1.23-fold; (Phosphoglycerate kinase, PGK), n673, n675 and n678 by 1.17- to 1.21-fold; (Sedoheptulose-1,7-bisphosphatase, SBPase), n705 by 1.18-fold; n793 and n794, FBA by 1.22 &#x2013; 1.35; n942, OEE by 1.37-fold; n1073, TIM by 1.36-fold; (Photosystem I reaction center subunit, Psa), PsaD, n1403 and n1410 by 1.47- to 2.11-fold; n1473, PsaE by 1.23-fold; n 1507, ATPE by 1.3-fold; n1511, PsbQ by 2.02-fold; n1802, PsaH by 1.89-fold] were significantly down-regulated by elevated CO<sub>2</sub> under normal temperature compared with ambient CO<sub>2</sub> (<bold>Figure <xref ref-type="fig" rid="F14">14A</xref></bold>).</p>
<fig id="F14" position="float">
<label>FIGURE 14</label>
<caption><p>Comparison of protein abundance caused by elevated CO<sub>2</sub> (800 &#x03BC;mol&#x22C5;mol<sup>-1</sup>) with ambient CO<sub>2</sub> (400 &#x03BC;mol&#x22C5;mol<sup>-1</sup>) under normal temperature control (30&#x00B0;C). Charts are organized by the functional category of proteins involved in photosynthesis, protein synthesis and degradation, oxidative pentose phosphate and mitochondrial electron transport as shown in <bold>(A)</bold> as well as amino acid metabolism, glycolysis, stress defense, nucleotide metabolism, N-metabolism, TCA cycle, miscellaneous, transport and unknown proteins as shown in <bold>(B)</bold>. The values of the mean &#x00B1; SE represent the relative expression fold change of proteins in response to elevated CO<sub>2</sub> under normal temperature. Labels with &#x2018;n&#x2019; in X-axle were same as <bold>Table <xref ref-type="table" rid="T2">2</xref></bold>.</p></caption>
<graphic xlink:href="fpls-08-01506-g014.tif"/>
</fig>
<p>Among proteins associated with the function of protein synthesis and degradation, cytokinin inducible protease (CLPC, n196) had a 1.9-fold up-regulation and the other two [(elongation factor, EF), n598 and n616] with 1.2- to 3.0-fold down-regulation compared with ambient CO<sub>2</sub> under normal temperature. Transketolase (n324) involved in oxidative pentose phosphate showed a 1.8-fold increase in response to elevated CO<sub>2</sub> (<bold>Figure <xref ref-type="fig" rid="F14">14A</xref></bold>). Proteins involved in amino acid metabolism exhibited increases in methionine synthase protein (MS, n248, n250) by 1.4- to 1.7-fold and cysteine synthase C1 (CSase, n814) by 1.6-fold as well as decreases in aspartate aminotransferase (ASP, n736, n760) by 1.3- to 1.5-fold and S-adenosylmethionine synthase (SAMS, n619) by 1.3-fold in plants grown at elevated CO<sub>2</sub> compared with ambient CO<sub>2</sub>. GAPDH associated with glycolysis were all down-regulated by 1.4- to 1.9-fold (n382, n776, n784) under elevated CO<sub>2</sub> except n808, which was increased by 2.4-fold under elevated CO<sub>2</sub> concentration. There were six proteins associating with stress defense of which four proteins [Heat shock protein (Hsp) 90, n238; Hsp 70, n300; Catalase, n447; Ascorbate peroxidase, n1019] were up-regulated by 1.2- to 1.4-fold and tow proteins (Hsp 70, n303; 2-cys peroxiredoxin BAS1, n1173) were down-regulated by 1.1- to 1.2-fold under elevated CO<sub>2</sub> concentration (<bold>Figure <xref ref-type="fig" rid="F14">14B</xref></bold>).</p>
<p>Under heat stress, elevated CO<sub>2</sub>-regulated proteins were classified the into following functional categories: photosynthesis (52.8%), TCA cycle (11.3%), stress defense (9.4%), glycolysis (7.5%), amino acid metabolism (5.7%), nucleotide metabolism (3.8%), metal handling (1.9%), major CHO metabolism (1.9%), protein synthesis (1.9%), cell cycle (1.9%) and transport (1.9%) (<bold>Figure <xref ref-type="fig" rid="F13">13B</xref></bold>). Proteins associated with photosynthesis were mainly up-regulated by elevated CO<sub>2</sub> under heat stress, including CPN60A (h712) by 1.2-fold, CPN60B (h730, h736) by 1.2- to 1.3-fold, ATP synthase subunit beta (ATPB, n826) by 1.4-fold, RBCL (h843) by 1.5-fold, PGK, (h1067) by 1.3-fold, GAPDH (h1150, h1162, h1162, h1192) by 1.3-fold, SBPase (h1154, h1157) by 1.3-fold, ATPC (h1176) by 1.3-fold, FBA (h1211, h1233) by 1.3- to 1.5-fold, OEE (h1398) by 2.1-fold, LHC (h1655) by 1.6-fold, PGR (h1900, h1930) by 1.2- to 1.7-fold, PsaD (h1905) by 2.5-fold, photosystem I reaction center subunit N (PsaN, h2563) by 1.5-fold (<bold>Figure <xref ref-type="fig" rid="F15">15A</xref></bold>). One protein associated with protein synthesis was upregulated by elevated CO<sub>2</sub> under heat stress (<bold>Figure <xref ref-type="fig" rid="F15">15A</xref></bold>). All proteins involved in amino acid metabolism and nucleotide metabolism were up-regulated by elevated CO<sub>2</sub> under heat stress, including MS (1.6-fold), SAMS (1.5-fold), CSase (1.4-fold), pyrophosphorylase 6 (PPa6, 1.7-fold), adenylate kinase (ADK, 1.5-fold). Most TCA cycle related proteins [(Malic enzyme, ME), h716 and h724] by 1.4- to 1.5-fold; [(Malate dehydrogenase, MDH), h1237, h1242 and h1258] by 1.2- to 1.5-fold)] were up-regulated by elevated CO<sub>2</sub> compared with ambient CO<sub>2</sub> during heat stress (<bold>Figure <xref ref-type="fig" rid="F15">15B</xref></bold>).</p>
<fig id="F15" position="float">
<label>FIGURE 15</label>
<caption><p>Comparison of protein abundance caused by elevated CO<sub>2</sub> (800 &#x03BC;mol&#x22C5;mol<sup>-1</sup>) with ambient CO<sub>2</sub> (400 &#x03BC;mol&#x22C5;mol<sup>-1</sup>) under heat stress (45&#x00B0;C). Charts are organized by the functional category of proteins involved in photosynthesis and protein synthesis as shown in <bold>(A)</bold> as well as amino acid metabolism, glycolysis, stress defense, TCA cycle, metal handing, major CHO metabolism, cell and transport as shown in <bold>(B)</bold>. The values of the mean &#x00B1; SE represent the relative expression fold change of proteins in response to elevated CO<sub>2</sub> under heat stress. Labels with &#x2018;h&#x2019; in X-axle were same as <bold>Table <xref ref-type="table" rid="T2">2</xref></bold>.</p></caption>
<graphic xlink:href="fpls-08-01506-g015.tif"/>
</fig>
</sec>
</sec>
<sec><title>Discussion</title>
<p>Previous studies have shown positive effects of elevated CO<sub>2</sub> on plant growth of C<sub>4</sub> species under optimal temperature conditions (<xref ref-type="bibr" rid="B22">Huang and Xu, 2015</xref>). In this study, elevated CO<sub>2</sub> significantly improved physiological activities of C<sub>4</sub> bermudagrass under heat stress or mitigated heat stress damages, as manifested by physiological indexes, including higher leaf <italic>P</italic><sub>n</sub>, <italic>F</italic><sub>v</sub>/<italic>F</italic><sub>m</sub> and Chl. The positive physiological effects were associated with changes in various metabolic pathways regulated by elevated CO<sub>2</sub>. Metabolic and proteomic analysis in this study indicated that the underlying mechanisms of elevated CO<sub>2</sub>-mitigation of heat stress were mainly related to photosynthesis, respiration (glycolysis and TCA cycle), amino acid metabolism, and GABA shunt, and some of the metabolic factors regulated by elevated CO<sub>2</sub> in the C<sub>4</sub> grass species, bermudagrass, in this study are in common and some are different from those previously found in C<sub>3</sub> grass species (<xref ref-type="bibr" rid="B74">Yu et al., 2014</xref>; <xref ref-type="bibr" rid="B13">Burgess and Huang, 2016</xref>). Due to the large number of metabolites and the complexity of metabolic pathways involved in CO<sub>2</sub> effects, the following sections focused on the discussion of unique or different metabolic pathways found in bermudagrass in our study from those findings previously reported in other C<sub>3</sub> plant species.</p>
<sec><title>Proteins and Metabolites in Photosynthesis Regulated by Elevated CO<sub>2</sub> under Heat Stress</title>
<p>In our present study, 67 out of 123 proteins (54.5%) associated with photosynthetic pathways, including proteins involved in electron transport chain and Calvin cycle, were responsive to elevated CO<sub>2</sub> concentration under normal and high temperatures, as shown by the decrease or increase in their abundance (<bold>Figure <xref ref-type="fig" rid="F16">16</xref></bold>). Under heat stress, the majority of proteins involved in photosynthesis exhibited accumulation in response to elevated CO<sub>2</sub> concentration, such as ATP synthase subunit (h826, h1176), photosystem I reaction center subunit [(PsaD, h1905) and (PsaN, h2563)] in light reactions of photosynthesis, and fructose-bisphosphate aldolase (FBA, h781, h1211, h1233), phosphoglycerate kinase (PGK, h1067) and sedoheptulose-1,7-bisphosphatase (SBPase, h1154, h1157) in Calvin cycle (<bold>Figure <xref ref-type="fig" rid="F15">15</xref></bold>). FBA is a primary enzyme involved in the sixth reaction of Calvin cycle to convert fructose 1,6-bisphosphate into glyceraldehyde-3-phosphate (G3P) and dihydroxyacetone phosphate as well as ATP (<xref ref-type="bibr" rid="B1">Abbasi and Komatsu, 2004</xref>). FBA content at the level of protein significantly increased under elevated CO<sub>2</sub> in C3 tall fescue under heat stress (<xref ref-type="bibr" rid="B74">Yu et al., 2014</xref>) and creeping bentgrass (<italic>Agrostis stolonifera</italic>) under both well-water and drought stress (<xref ref-type="bibr" rid="B13">Burgess and Huang, 2016</xref>). SBPase functions as a bisphosphatase enzyme catalyzing sedoheptulose 1,7-bisphosphate dephosphorylation to sedoheptulose-7-phosphate during the regeneration phase of Calvin cycle (<xref ref-type="bibr" rid="B47">Raines et al., 1999</xref>). Overexpression of SBPase in C<sub>3</sub> tobacco (<italic>Nicotiana tabacum</italic>) had higher photosynthesis at elevated CO<sub>2</sub> compared with that at ambient CO<sub>2</sub> under field conditions (<xref ref-type="bibr" rid="B52">Rosenthal et al., 2011</xref>). The benefits of SBPase on the stimulation of photosynthesis depended on light intensity (<xref ref-type="bibr" rid="B28">Lefebvre et al., 2005</xref>; <xref ref-type="bibr" rid="B52">Rosenthal et al., 2011</xref>). Therefore, our study and another case in creeping bentgrass, conducted in light saturated growth chambers, the abundance of SBPase was enhanced by elevated CO<sub>2</sub> under abiotic stresses (<xref ref-type="bibr" rid="B13">Burgess and Huang, 2016</xref>). FBA is a primary enzyme involved in the sixth reaction of Calvin cycle to convert fructose 1,6-bisphosphate into glyceraldehyde-3-phosphate (G3P), dihydroxyacetone phosphate and ATP (<xref ref-type="bibr" rid="B1">Abbasi and Komatsu, 2004</xref>). In addition, FBA could directly affect ribulose-1,5-bisphosphate (RuBP) regeneration which actions as substrate of carbon fixation (<xref ref-type="bibr" rid="B58">Taiz and Zeiger, 2010</xref>). FBA content at the level of protein showed the grater accumulation in elevated CO<sub>2</sub> in C<sub>3</sub> tall fescue under heat stress (<xref ref-type="bibr" rid="B74">Yu et al., 2014</xref>) and creeping bentgrass (<italic>Agrostis stolonifera</italic>) under both well-water and drought stress (<xref ref-type="bibr" rid="B13">Burgess and Huang, 2016</xref>). PGK is a major enzyme catalyzing the phosphorylation of 3-phosphoglycerate to produce 1, 3-bisphosphoglycerate and ADP which is one of vital steps regenerating RuBP during Calvin cycle (<xref ref-type="bibr" rid="B6">Bernstein et al., 1997</xref>). The regulation of FBA and PGK induced by elevated CO<sub>2</sub> indicated that elevated CO<sub>2</sub> availability in atmosphere could be helpful for sustaining ATP supply and RuBP regeneration for plant growth under heat stress. ATP synthase is a critical enzyme for creating energy storage molecule ATP. Under high CO<sub>2</sub> availability, ATP synthase was found to decline in wheat grain (<xref ref-type="bibr" rid="B21">H&#x00F6;gy et al., 2009</xref>). To our knowledge, our case is the first report on the abundance of ATP synthase and PGK in response to elevated CO<sub>2</sub> were found in C<sub>4</sub> plant species grown under heat stress. Our previous study in C<sub>3</sub> plant species found differential responses of photosynthesis-related proteins to elevated CO<sub>2</sub> different from found in bermudagrass in our study. In tall fescue, the abundance of ATP synthase subunit and PGK did not change in response to elevated CO<sub>2</sub> under heat stress (<xref ref-type="bibr" rid="B74">Yu et al., 2014</xref>). The increase in abundance and activity of a single or some enzyme(s) during photosynthesis could enhance carbon assimilation (<xref ref-type="bibr" rid="B52">Rosenthal et al., 2011</xref>). Taken together, the enhanced accumulation of proteins involved in photosynthesis by elevated CO<sub>2</sub> under heat stress in bermudagrass suggested that elevated CO<sub>2</sub> could help to maintain photosynthesis to withstand the adverse environments as various proteins are involved in the light harvesting, electron transport, and carbohydrate assimilation processes of photosynthesis.</p>
<fig id="F16" position="float">
<label>FIGURE 16</label>
<caption><p>The metabolic pathways associated with differentially expressed proteins. The treatments symbols are 30 and 45 for normal temperature control and heat stress and 400 and 800 for ambient CO<sub>2</sub> and elevated CO<sub>2</sub> concentrations, respectively. Labels with &#x2018;n&#x2019; or &#x2018;h&#x2019; were same as <bold>Table <xref ref-type="table" rid="T2">2</xref></bold>. RuBP, Ribulose 1, 5-bisphosphate; R5P, Ribulose 5-phosphate; Rubisco, Ribulose 1, 5-bisphosphate carboxylase/oxygenase; PGA, 3-phosphoglyceric acid; G3P, Glyceraldehyde 3-phosphate; PC, Plastocyanin; PQ, Plastoquinone; Fd, Ferredoxin; Cyt, Cytochrome complex.</p></caption>
<graphic xlink:href="fpls-08-01506-g016.tif"/>
</fig>
<p>Other proteins related to photosynthesis such as GAPDH, OEE, PGR exhibited the enhanced expression in plants grown at elevated CO<sub>2</sub> concentration under both temperatures in our study. GAPDH could convert G3P to D-glycerate 1,3-bisphosphate as well as mediating the formation of NADH and ATP (<xref ref-type="bibr" rid="B62">Tristan et al., 2011</xref>). It has multiple functions, such as two chloroplastic forms playing photosynthetic function locating in chloroplast and one cytosolic form participating in glycolysis in higher plants (<xref ref-type="bibr" rid="B56">Sparla et al., 2005</xref>; <xref ref-type="bibr" rid="B60">Tarze et al., 2007</xref>). In chloroplasts, GAPDH catalyzes a reaction of NADPH-consuming which is regulated by light utilizing thioredoxins and metabolites during Calvin cycle (<xref ref-type="bibr" rid="B56">Sparla et al., 2005</xref>). Various stresses caused the decline in chloroplastic GAPDH whereas stress-tolerant species exhibited higher GAPDH abundance than stress-sensitive plants, such as creeping bentgrass under heat stress (<xref ref-type="bibr" rid="B66">Xu and Huang, 2010a</xref>; <xref ref-type="bibr" rid="B33">Merewitz et al., 2011</xref>), salinity stress (<xref ref-type="bibr" rid="B67">Xu and Huang, 2010b</xref>) and drought stress (<xref ref-type="bibr" rid="B13">Burgess and Huang, 2016</xref>). Plants with lower GAPDH abundance were generally associated with decreased photosynthetic capacity resulted from reduced RuBP regeneration rate, followed with the decline in accumulation of photosynthetic products (<xref ref-type="bibr" rid="B43">Price et al., 1995</xref>; <xref ref-type="bibr" rid="B13">Burgess and Huang, 2016</xref>). However, elevated CO<sub>2</sub> had no effects on chloroplastic GAPDH abundance under heat stressed condition but caused significant decrease under non-stressed control plants (<xref ref-type="bibr" rid="B74">Yu et al., 2014</xref>). Overall, our study suggested that enhanced abundance of photosynthesis-related proteins could contribute to the improved photosynthetic activities by elevated CO<sub>2</sub>, particularly under heat stress, which could be reflected with improved <italic>P</italic><sub>n</sub> and increased content of sugars, such as fructose, glucose, sucrose, erythrose, and glucopyranose.</p>
</sec>
<sec><title>Proteins and Metabolites in Respiration Regulated by Elevated CO<sub>2</sub> under Heat Stress</title>
<p>It has been widely known that glycolysis and TCA cycle are vital pathways for energy supply, amino acid synthesis and various other biological processes in plants (<xref ref-type="bibr" rid="B15">Fernie et al., 2004</xref>; <xref ref-type="bibr" rid="B31">Ma et al., 2016</xref>). As substrate of photosynthesis for carboxylation, plants grown at elevated CO<sub>2</sub> tended to accumulate the larger amount of non-structural carbohydrates (<xref ref-type="bibr" rid="B72">Yu et al., 2012a</xref>; <xref ref-type="bibr" rid="B55">Song et al., 2014</xref>). Most monosaccharides (glucose, fructose, galactose, etc.) as substrate or intermediates play vital roles during glycolysis. Glycolysis pathway could convert glucose into pyruvate via a series of intermediate metabolites and cytosolic GAPDH is one of essential enzymes catalyzing the sixth step of respiratory glycolysis to convert G3P to 1, 3-bisphosphateglycerate (1, 3-BPG) which is one of the most important reactions during the glycolytic pathway (<xref ref-type="bibr" rid="B34">Mijeong et al., 2000</xref>). The increase of pyruvic acid (pyruvate) as the product of glycolysis, followed by the enhanced content of valine, isoleucine and alanine, was partly due to elevated CO<sub>2</sub>-caused accumulation of glucose under heat stress in our study, since those metabolites are all derived from glucose. In C<sub>3</sub> tall fescue, we also observed the significant increases in valine and alanine but not for isoleucine resulted from elevated CO<sub>2</sub> under heat stress (<xref ref-type="bibr" rid="B72">Yu et al., 2012a</xref>). During the pathway of glycolysis, the abundance of GAPDH in cytosol (n776, n784, n816 except n808) and phosphoglycerate mutase (PGAM, n382) exhibited the down-regulation in response to elevated CO<sub>2</sub> rather than ambient CO<sub>2</sub> under normal temperature, while under heat stressed conditions elevated CO<sub>2</sub> caused up-regulation in GAPDH (h845, h1164, h1167 except h1182) in bermudagrass (<bold>Figure <xref ref-type="fig" rid="F16">16</xref></bold>). GAPDH might serve as a provider of additional energy for plant growth and development under stressed conditions and stress tolerance could be enhanced by improved abundance of GAPDH to cope with environmental stresses (<xref ref-type="bibr" rid="B34">Mijeong et al., 2000</xref>; <xref ref-type="bibr" rid="B7">Bertrand et al., 2007</xref>). In C<sub>3</sub> plants, no consistent changes were found due to variations in plant species. For example, in tall fescue and creeping bentgrass, the abundance of cytosolic GAPDH exhibited either no changes or decrease under elevated CO<sub>2</sub> and heat stressed condition (<xref ref-type="bibr" rid="B74">Yu et al., 2014</xref>; <xref ref-type="bibr" rid="B13">Burgess and Huang, 2016</xref>). <xref ref-type="bibr" rid="B24">Kappachery et al. (2015)</xref> found that GAPDH gene-silenced lines showed more sensitive traits to drought stress than non-silenced lines in potato (<italic>Solanum tuberosum</italic>). By contrast, the higher shoot length and weight were detected in GAPDH overexpression transgenic plants compared with wild-type plants (<xref ref-type="bibr" rid="B24">Kappachery et al., 2015</xref>). In the level of transcription in potato, cytosolic GAPDH RNA accumulation was also increased under biological stress (<xref ref-type="bibr" rid="B27">Laxalt et al., 1996</xref>). Therefore, in our study, the higher abundance of GAPDH caused by elevated CO<sub>2</sub> was beneficial for energy supply to support plant growth under heat stress.</p>
<p>Malate dehydrogenase (MDH) acts as an enzyme to catalyze the oxidation of malate to oxaloacetate via the reduction of NAD<sup>+</sup> to NADH in mitochondrial matrix during TCA cycle (<xref ref-type="bibr" rid="B37">Musrati et al., 1998</xref>). Environmental stresses including drought (<xref ref-type="bibr" rid="B13">Burgess and Huang, 2016</xref>), heat (<xref ref-type="bibr" rid="B66">Xu and Huang, 2010a</xref>), salinity (<xref ref-type="bibr" rid="B68">Xu et al., 2010</xref>) and Al-stress (<xref ref-type="bibr" rid="B48">Ram&#x00ED;rez-Ben&#x00ED;tez et al., 2008</xref>) have been shown to decrease the level of MDH in various plant species. However, limited studies about MDH were found in plants grown at elevated CO<sub>2</sub> concentrations, especially under stressed conditions (<xref ref-type="bibr" rid="B13">Burgess and Huang, 2016</xref>). In this study, elevated CO<sub>2</sub>-responsive MDH (n827, h1237, h1242, h1258) involved in TCA cycle exhibited up-regulated expression regardless of temperatures, suggesting that CO<sub>2</sub> inhibited the heat-induced reduction in MDH to catalyze the enhanced malate (malic acid) to oxaloacetate (oxaloacetic acid) during malate metabolism.</p>
</sec>
<sec><title>Amino Acid Metabolism and GABA Shunt Regulated by Elevated CO<sub>2</sub> under Heat Stress</title>
<p>In addition to function in TCA cycle, MDH also participates in the process of amino acid synthesis due to the relations among malate, oxaloacetate and aspartate (<xref ref-type="bibr" rid="B37">Musrati et al., 1998</xref>; <xref ref-type="bibr" rid="B64">Wen et al., 2015</xref>). Several amino acids including aspartate (aspartic acid), methionine, threonine, isoleucine, lysine derived from oxaloacetate and aspartate is the precursor of methionine, threonine, isoleucine and lysine (<xref ref-type="bibr" rid="B36">Muehlbauer et al., 1994</xref>). Along with the significant increase in malic acid and aspartic acid, the content of threonine, isoleucine and lysine were stimulated by elevated CO<sub>2</sub> during heat stress. Furthermore, the content of alanine, valine and serine were also enhanced by elevated CO<sub>2</sub> compared with ambient CO<sub>2</sub> under heat stress. Alanine, valine and serine are used for synthesis of several proteins and associated with many metabolic processes (<xref ref-type="bibr" rid="B10">Bourguignon et al., 1999</xref>). The stimulation of elevated CO<sub>2</sub> concentration on the content of alanine, valine and serine was found in other species under abiotic stresses, as previously reported in C<sub>3</sub> grass species under heat stress (<xref ref-type="bibr" rid="B72">Yu et al., 2012a</xref>) and tree seedlings under drought stress (<xref ref-type="bibr" rid="B63">Tschaplinski et al., 1995</xref>). The increase in synthesis of both alanine and valine in present study is directly associated with the higher content of pyruvate (pyruvate acid) which is the final product of glycolysis (<xref ref-type="bibr" rid="B53">Schulzesiebert et al., 1984</xref>). Superior stress tolerance has been reported with the higher content of alanine, valine and serine as well as other amino acids such as GABA, glutamic acid, proline and 5-oxoproline involved in the GABA shunt pathway in plant species, including perennial grasses (<xref ref-type="bibr" rid="B32">Merewitz et al., 2012</xref>; <xref ref-type="bibr" rid="B69">Xu et al., 2013</xref>; <xref ref-type="bibr" rid="B54">Shi et al., 2014</xref>; <xref ref-type="bibr" rid="B29">Li et al., 2016a</xref>,<xref ref-type="bibr" rid="B30">b</xref>). The GABA shunt was considered to be a part of the TCA cycle during respiration besides its central role in primary carbon and nitrogen metabolism (<xref ref-type="bibr" rid="B14">Fait et al., 2008</xref>). In tall fescue, the content of GABA was significantly decreased by elevated CO<sub>2</sub> under high temperature (<xref ref-type="bibr" rid="B74">Yu et al., 2014</xref>). While, in bermudagrass of this case, GABA and glutamic acid exhibited the opposite response to elevated CO<sub>2</sub> under heat stress. Increased GABA caused the enhanced content of alanine and pyruvate which was turned into TCA cycle and proline metabolism. The content of all amino acids except arginine during GABA shunt was increased by elevated CO<sub>2</sub> under heat stress suggesting a predominant role of elevated CO<sub>2</sub> in carbon and nitrogen metabolism in C<sub>4</sub> bermudagrass.</p>
<p>Proteins including methionine synthase (MS), cysteine synthase (CSase) and S-adenosylmethionine synthase (SAMS) associated with amino acid metabolism were up-regulated by 1.4- to 1.6-fold by elevated CO<sub>2</sub> under heat stress. MS and SAMS serve as regulators in the synthesis and degradative pathways of various amino acids (<xref ref-type="bibr" rid="B9">Bohnert and Jensen, 1996</xref>). It was detected by the same proteomic analysis that many proteins involved in amino acid metabolism accumulated more or degraded less in stress-tolerant plants, such as MS and SAMS (<xref ref-type="bibr" rid="B33">Merewitz et al., 2011</xref>). CSase functions in the final strep in cysteine synthesis in plants. Plants with overexpressing CSase gene displayed high tolerance to toxic environmental pollutants, such as sulfur dioxide and sulfite (<xref ref-type="bibr" rid="B38">Noji et al., 2001</xref>), cadmium toxicity (<xref ref-type="bibr" rid="B19">Harada et al., 2001</xref>) in tobacco and aluminum toxicity in rice (<xref ref-type="bibr" rid="B70">Yang et al., 2007</xref>). The accumulation of many amino acids as well as proteins involved in amino acid metabolism in this study could contribute to elevated CO<sub>2</sub>-improved heat tolerance.</p>
<p>In summary, elevated CO<sub>2</sub> concentration suppressed heat-induced damages in bermudagrass, as shown by the increased <italic>P</italic><sub>n</sub>, Chl and <italic>F</italic><sub>v</sub>/<italic>F</italic><sub>m</sub>. The improvement of heat tolerance under elevated CO<sub>2</sub> could be associated with some important metabolic pathways during which proteins and metabolites were up-regulated, including proteins, sugars and/or amino acids involved in light reaction (ATP synthase subunit and photosystem I reaction center subunit) and carbon fixation of photosynthesis (GAPDH, FBA, PGK, SBPase and sugars), glycolysis (GAPDH, glucose, fructose and galactose) and TCA cycle (pyruvic acid, malic acid and MDH) of respiration, amino acid metabolism (aspartic acid, methionine, threonine, isoleucine, lysine, valine, alanine and isoleucine) as well as the GABA shunt (GABA, glutamic acid, alanine, proline and 5-oxoproline). The molecular factors and mechanisms underlying the metabolic changes caused by elevated CO<sub>2</sub> during plant responses to heat stress require further investigation.</p>
</sec>
</sec>
<sec><title>Author Contributions</title>
<p>JY and BH designed the experiments and wrote the manuscript. JY and RL conducted the experiments. NF helped with the sample analysis. ZY arranged the experiments and did the data analysis.</p>
</sec>
<sec><title>Conflict of Interest Statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<ack>
<p>This research was supported by the National Natural Science Foundation of China (31301799) and the Fundamental Research Funds for the Central Universities (KYZ201673).</p>
</ack>
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