<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2017.00164</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Methyl Jasmonate Regulates Podophyllotoxin Accumulation in <italic>Podophyllum hexandrum</italic> by Altering the ROS-Responsive Podophyllotoxin Pathway Gene Expression Additionally through the Down Regulation of Few Interfering miRNAs</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Hazra</surname> <given-names>Saptarshi</given-names></name>
</contrib>
<contrib contrib-type="author">
<name><surname>Bhattacharyya</surname> <given-names>Dipto</given-names></name>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Chattopadhyay</surname> <given-names>Sharmila</given-names></name>
<xref ref-type="author-notes" rid="fn001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/109730/overview"/>
</contrib>
</contrib-group>
<aff><institution>Plant Biology Laboratory, Organic and Medicinal Chemistry Division, Council of Scientific and Industrial Research-Indian Institute Chemical Biology</institution> <country>Kolkata, India</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: <italic>Fumiya Kurosaki, University of Toyama, Japan</italic></p></fn>
<fn fn-type="edited-by"><p>Reviewed by: <italic>Guzel Kudoyarova, Institute of Biology (RAS), Russia; Chunhua Fu, Huazhong University of Science and Technology, China</italic></p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x002A;Correspondence: <italic>Sharmila Chattopadhyay, <email>sharmila@iicb.res.in</email>; <email>chattopadhyay62@gmail.com</email></italic></p></fn>
<fn fn-type="other" id="fn002"><p><sup>&#x2020;</sup>Present address: <italic>Dipto Bhattacharyya, Division of Biotechnology, Chonbuk National University, Iksan-si, South Korea</italic></p></fn>
<fn fn-type="other" id="fn003"><p>This article was submitted to Plant Metabolism and Chemodiversity, a section of the journal Frontiers in Plant Science</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>14</day>
<month>02</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>08</volume>
<elocation-id>164</elocation-id>
<history>
<date date-type="received">
<day>30</day>
<month>11</month>
<year>2016</year>
</date>
<date date-type="accepted">
<day>26</day>
<month>01</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2017 Hazra, Bhattacharyya and Chattopadhyay.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Hazra, Bhattacharyya and Chattopadhyay</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Podophylloxin (ptox), primarily obtained from <italic>Podophyllum hexandrum</italic>, is the precursor for semi-synthetic anticancer drugs viz. etoposide, etopophos, and teniposide. Previous studies established that methyl jasmonate (MeJA) treated cell culture of <italic>P. hexandrum</italic> accumulate ptox significantly. However, the molecular mechanism of MeJA induced ptox accumulation is yet to be explored. Here, we demonstrate that MeJA induces reactive oxygen species (ROS) production, which stimulates ptox accumulation significantly and up regulates three ROS-responsive ptox biosynthetic genes, namely, <italic>PhCAD</italic>3, <italic>PhCAD</italic>4 (cinnamyl alcohol dehydrogenase), and <italic>NAC</italic>3 by increasing their mRNA stability. Classic uncoupler of oxidative phosphorylation, carbonylcyanide <italic>m</italic>-chlorophenylhydrazone, as well as H<sub>2</sub>O<sub>2</sub> treatment induced the ROS generation and consequently, enhanced the ptox production. However, when the ROS was inhibited with NADPH oxidase inhibitor diphenylene iodonium and Superoxide dismutase inhibitor diethyldithio-carbamic acid, the ROS inhibiting agent, the ptox production was decreased significantly. We also noted that, MeJA up regulated other ptox biosynthetic pathway genes which are not affected by the MeJA induced ROS. Further, these ROS non-responsive genes were controlled by MeJA through the down regulation of five secondary metabolites biosynthesis specific miRNAs viz. miR172i, miR035, miR1438, miR2275, and miR8291. Finally, this study suggested two possible mechanisms through which MeJA modulates the ptox biosynthesis: primarily by increasing the mRNA stability of ROS-responsive genes and secondly, by the up regulation of ROS non-responsive genes through the down regulation of some ROS non-responsive miRNAs.</p>
</abstract>
<kwd-group>
<kwd>mRNA decay</kwd>
<kwd>MeJA</kwd>
<kwd>miRNA</kwd>
<kwd><italic>Podophyllum hexandrum</italic></kwd>
<kwd>ptox</kwd>
<kwd>ROS</kwd>
</kwd-group>
<counts>
<fig-count count="4"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="47"/>
<page-count count="9"/>
<word-count count="0"/>
</counts>
</article-meta>
</front>
<body>
<sec><title>Introduction</title>
<p>The mechanism of action of ptox is based on inhibiting the polymerisation of tubulin and arresting of the cell cycle in the metaphase (<xref ref-type="bibr" rid="B2">Ayres and Loike, 1990</xref>; <xref ref-type="bibr" rid="B9">Buss and Waigh, 1995</xref>). Glycosidic derivatives of ptox, namely, etoposide, etopophos, and teniposide inhibit the cell cycle by inhibiting the DNA topo isomerase II (<xref ref-type="bibr" rid="B19">Fleming et al., 1989</xref>; <xref ref-type="bibr" rid="B43">Von Wartburg and Stahelin, 1993</xref>). Previous studies have also shown that ptox and its derivatives exhibit biological activity as strong antiviral agents and as antineoplastic drugs and its glycosidic derivatives, etoposide, etopophos (etoposide phosphate), teniposide are thus widely used for the treatment for various types of malignancy (<xref ref-type="bibr" rid="B37">Stahelin and von Wartburg, 1991</xref>; <xref ref-type="bibr" rid="B10">Canela et al., 2000</xref>). Ptox, is a polyphenolic substance, and formed by the combination of two phenylpropane units. Ptox is one of the most frequently used cytotoxic lignan isolated from podophyllin, which is an ethanolic extract of an endangered medicinal plant, <italic>P. hexandrum</italic> (<xref ref-type="bibr" rid="B37">Stahelin and von Wartburg, 1991</xref>; <xref ref-type="bibr" rid="B20">Gordaliza et al., 2004</xref>). This medicinal herb is generally grown at high altitude of the Himalayas and belongs to the Berberidaceae family. In one recent study, the <italic>Podophyllum</italic> Germination Network (PGN) has been constructed in reference to <italic>Arabidopsis thaliana</italic> to explore the underlying potential of seed germination mechanisms (<xref ref-type="bibr" rid="B18">Dogra et al., 2015</xref>). Previous studies reported that the chemical synthesis of cyclolignan like ptox is yet to be feasible. Thus, various biotechnological techniques like biotransformations, etc. (<xref ref-type="bibr" rid="B27">Kutney, 1999</xref>), especially transgenic hairy roots produced by infection of plants with <italic>Agrobacterium rhizogenes</italic> and cell culture based production of cyclolignan like ptox have been studied extensively (<xref ref-type="bibr" rid="B25">Kadkade, 1981</xref>; <xref ref-type="bibr" rid="B41">van Uden et al., 1989</xref>; <xref ref-type="bibr" rid="B22">Heyenga et al., 1990</xref>; <xref ref-type="bibr" rid="B34">Seidel et al., 2002</xref>; <xref ref-type="bibr" rid="B13">Chattopadhyay et al., 2003</xref>). It was also reported that MeJA treatment induce the production of lariciresinol, another lignan, in hairy root cultures of <italic>Isatis indigotica</italic> (<xref ref-type="bibr" rid="B15">Chen et al., 2015</xref>).</p>
<p>Previously, the cell suspension cultures of <italic>Linum</italic> spp. was noted with higher yield of ptox using MeJA and salicylic acid (SA) as elicitors (<xref ref-type="bibr" rid="B40">van Furden et al., 2005</xref>; <xref ref-type="bibr" rid="B46">Yousefzadi et al., 2010</xref>). MeJA treatment also induced the other secondary metabolie production like paclitaxel in the cell culture of <italic>Taxus cuspidate</italic> (<xref ref-type="bibr" rid="B28">Lenka et al., 2015</xref>). Treatment of the cell culture of <italic>L. nodiflorum</italic> with coronalon, indanoyl-isoleucine and MeJA induced the accumulation of 6-methoxypodophyllotoxin, a lignan related to ptox (<xref ref-type="bibr" rid="B3">Berim et al., 2005</xref>). In our previous studies, we have also reported the 8- to 10-fold higher yield of ptox in MeJA treated old cell culture of <italic>P. hexandrum</italic> (<xref ref-type="bibr" rid="B5">Bhattacharyya et al., 2012</xref>).</p>
<p>Jasmonic acid (JA) and its methyl derivative, MeJA, are well known as plant signaling compound that involves in stress management and development. <xref ref-type="bibr" rid="B44">Wang and Wu (2005)</xref> reported that exogenous treatment of JA and MeJA, actually mimic the effects of wounding and these elicitors bring the relative response like production of secondary metabolite as well as ROS. It has also been reported that MeJA induced ROS alter the mitochondrial dynamics that resulted in photosynthetic dysfunction and cell death (<xref ref-type="bibr" rid="B47">Zhang and Xing, 2008</xref>). According to <xref ref-type="bibr" rid="B44">Wang and Wu (2005)</xref> MeJA induces the ROS, which includes H<sub>2</sub>O<sub>2</sub> and NO, in cell culture of <italic>Taxus</italic> sp. and the introduction of ROS inhibitor to culture reduce the MeJA induced taxol production. Similar to the changes in taxol from <italic>Taxus sp.</italic>, concentration of other secondary metabolites like phytoalexin were also increased by ROS via cyclopentenone isoprostanes in tomato (<xref ref-type="bibr" rid="B39">Thoma et al., 2003</xref>). MeJA induced production of H<sub>2</sub>O<sub>2</sub> also reported in rice leaves. According to <xref ref-type="bibr" rid="B32">Orozco-C&#x00E1;rdenas et al. (2001)</xref> H<sub>2</sub>O<sub>2</sub> acts as a second messenger upon treatment with MeJA and induced systemin production to the tomato plant.</p>
<p>Previously, we also did a whole transcriptome analysis of control and MeJA treated cell culture of <italic>P. hexandrum</italic> and identified ptox specific CAD isoforms namely, PhCAD3 and PhCAD4 (<xref ref-type="bibr" rid="B4">Bhattacharyya et al., 2016</xref>, <xref ref-type="bibr" rid="B6">2013</xref>). However, the mechanism through which MeJA regulates ptox biosynthetic pathway genes is yet to be understood. This study revealed the molecular mechanism of MeJA altered ptox accumulation by regulating ptox biosynthetic pathway genes at transcript level. This has shown that MeJA induced ROS alters the mRNA stability of selected pathway genes to regulate their expression at transcript level. In addition to that, it was also noted that MeJA up regulates other ptox biosynthetic pathway genes which were not regulated by ROS. These ROS non-responsive genes may be regulated by the down regulation of particular MeJA responsive miRNAs, which are interfering with ptox pathway genes. Together, this study suggests two possible molecular mechanisms of MeJA induced ptox accumulation in <italic>P. hexandrum</italic> cell culture.</p>
</sec>
<sec id="s1" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec><title>Plant Growth Condition and Treatment</title>
<p>Callus was derived from mature leaves of <italic>P. hexandrum</italic> in Murasige and Skoog (MS) medium supplemented with 2.68 &#x03BC;M alpha-Naphthaleneacetic acid (NAA) and 8.88 &#x03BC;M 6-Benzylaminopurine (BAP; <xref ref-type="bibr" rid="B12">Chakraborty et al., 2010</xref>) Subculture of callus was done after every 2 weeks in the above mentioned medium. Cell suspension culture was initiated according to <xref ref-type="bibr" rid="B5">Bhattacharyya et al. (2012)</xref>. In brief, 5 g cells of fresh green callus was inoculated in 50 ml culture containing 60 mM total N<sub>2</sub> content, 1.25 mM potassium dihydrogen phosphate, 6% glucose and 11.41 &#x03BC;M 3-Indoleacetic acid (IAA). Cultures were incubated at 22&#x00B0;C for 3 days at 110 rpm before treatment. Three days old cell cultures were treated with MeJA (100 &#x03BC;M); classic uncoupler of oxidative phosphorylation CCCP (<xref ref-type="bibr" rid="B23">Izeradjene et al., 2005</xref>; 100 &#x03BC;M); ROS inhibitor, DPI (1 &#x03BC;M); ROS inhibitor, DETC (10 &#x03BC;M), (Sigma-Aldrich, USA) and H<sub>2</sub>O<sub>2</sub> (Merck, USA; 20 mM) in different combination. Two hours was noted as an optimum time point for harvesting the cells after treatment.</p>
</sec>
<sec><title>Isolation of Protoplast for ROS Determination by Confocal and Flow Cytometry</title>
<p>Protoplast was isolated from 200 mg cells from 3 days old cell suspension culture (<xref ref-type="bibr" rid="B47">Zhang and Xing, 2008</xref>). Isolated protoplasts were finally washed in 0.35 M mannitol in liquid MS medium (pH 5.8) and treated with 100 &#x03BC;M MeJA or with ROS inducers or ROS inhibitors as designed and sampled after 2 h for confocal and FACS study.</p>
</sec>
<sec><title>Determination of ROS by Confocal Microscopy and FACS</title>
<p>For confocal microscopy treated protoplast was incubated with 6-carboxy-2,7-dichlorodihydrofluorescein diacetate (DCFDA; Sigma-Aldrich; 5 mM) in the dark for 5 min (<xref ref-type="bibr" rid="B47">Zhang and Xing, 2008</xref>). The intracellular ROS production was visualized under the Andor Spinning Disk Confocal Microscope. For DCFDA, solid state laser excitation was 488 nm and emission was at 525 nm. For ROS generation analysis by FACS, protoplasts were incubated with 40 &#x03BC;M DCFDA for 5 min in the dark after the treatment. DCFDA is deacetylated by intracellular esterase, which is further oxidized by ROS to the fluorescent compound 2,7-dichlorofluorescein (DCF). DCF fluorescence was detected by FACS (Becton&#x2013;Dickinson), using Cell Quest software. Ten thousand events were recorded for each sample.</p>
</sec>
<sec><title>Extraction of Ptox by HPLC Analysis</title>
<p>The ptox extraction from various samples was performed as described previously (<xref ref-type="bibr" rid="B5">Bhattacharyya et al., 2012</xref>). In brief, 100 mg of harvested cells was homogenized with liquid nitrogen and then extracted with ethyl acetate for over night. For HPLC analysis, the supernatant was decanted after ethyl acetate extraction, evaporated to dryness and dissolved in methanol for further use (<xref ref-type="bibr" rid="B26">Kartal et al., 2004</xref>). Column and instrumentation for analysis were performed as standardized (<xref ref-type="bibr" rid="B5">Bhattacharyya et al., 2012</xref>).</p>
</sec>
<sec><title>Extraction of RNA and Quantitative RT-PCR (RT-qPCR) Analysis</title>
<p>Total RNA was extracted from the harvested cells from control and treated culture with Trizol (Invitrogen) according to a standardized protocol (<xref ref-type="bibr" rid="B4">Bhattacharyya et al., 2016</xref>) in three replicates. cDNA was synthesized using RevertAid H Minus First Strand cDNA Synthesis kit (Fermentas, USA). The qRT-PCR was performed using the Light Cycler 96 System (Roche Applied Science, USA) with FastStart Essential DNA Green Master (Roche Applied Science). The constitutively expressed actin gene was used as the reference gene. Gene specific primers for performing RT-qPCR are given in Supplemental Table <xref ref-type="supplementary-material" rid="SM1">1</xref>. Total 19 ptox biosynthetic pathway genes were selected, including five phenylpropanoid pathway related transcription factors and grouped them in four groups as mentioned below. Group A: four CAD isoforms namely <italic>PhCAD</italic>1, <italic>PhCAD</italic>2, <italic>PhCAD</italic>3, <italic>PhCAD</italic>4; Group B: five genes upstream of CAD; Group C: five genes downstream of CAD and Group D: five transcription factors related to phenylpropanoid pathway (All genes were submitted under the accession numbers <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="SRX180871">SRX180871</ext-link> and <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="SRX180389">SRX180389</ext-link>). Here, CAD isoforms were kept in the middle position because CAD is the most important rate limiting gene, which actually controls the trafficking of coniferyl alcohol, a precursor of ptox and lignin biosynthesis, toward ptox and lignin.</p>
</sec>
<sec><title>mRNA Stability Assay</title>
<p>mRNA stability assay was performed according to <xref ref-type="bibr" rid="B17">Datta et al. (2015)</xref>. In brief, the control and treated cell cultures were further treated with 200 mM actinomycin D (Sigma-Aldrich) and cells were harvested after 2, 4, 6, 8, 10, and 12 h. Total RNA was isolated for further RT-qPCR by using gene specific primers for <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3. Cell culture treated with water was taken as mock treated. Prior to the treatment with water, cultures were pre-incubated in actinomycin D for 30 min to allow proper distribution of the antibiotic.</p>
</sec>
<sec><title>RT-qPCR of miRNA</title>
<p>Stem loop RT-qPCR of miRNA was done according to <xref ref-type="bibr" rid="B42">Varkonyi-Gasic et al. (2007)</xref> with minor modifications. In brief, the total miRNA was isolated from the harvested cells of the treated and control cell culture of <italic>P. hexandrum</italic> using the mirPremier microRNA isolation kit (Sigma-Aldrich) according to the manufacturer&#x2019;s instructions. Hundred nano-gram miRNA was used for cDNA preparation using stem loop RT primers according to <xref ref-type="bibr" rid="B7">Biswas et al. (2016)</xref>. The RT-qPCR was performed using Light Cycler 96 System (Roche Applied Science) with FastStart Essential DNA Green Master (Roche Applied Science). The constitutively expressed <italic>ubiquitin</italic>-6 gene was used as the reference gene. miRNA specific primers for performing RT-qPCR are listed in Supplemental Table <xref ref-type="supplementary-material" rid="SM2">2</xref>.</p>
</sec>
</sec>
<sec><title>Result</title>
<sec><title>Detection of ROS and Measurement Ptox Content From Treated <italic>P. hexandrum</italic> Cell Culture</title>
<p>The detection of ROS is concurrent to the enhanced ptox accumulation in 2 h MeJA treated 3 days old <italic>P. hexandrum</italic> cell culture (<bold>Figures <xref ref-type="fig" rid="F1">1A&#x2013;C</xref></bold>). Treatment with CCCP and H<sub>2</sub>O<sub>2</sub> also induced the ROS in the cell culture after 2 h of treatment. Amount of ROS produced after H<sub>2</sub>O<sub>2</sub> treatment was maximum (<bold>Figures <xref ref-type="fig" rid="F1">1A,B</xref></bold>). The independent treatments of both CCCP and H<sub>2</sub>O<sub>2</sub> increased the ptox content in the cell culture, where the maximum amount of ptox was accumulated after CCCP treatment for 2 h (<bold>Figure <xref ref-type="fig" rid="F1">1C</xref></bold>). Interestingly, when ROS production was inhibited by the combination of DPI and DETC treatment in MeJA and CCCP treated cultures, decreased ptox content was noted as well (<bold>Figures <xref ref-type="fig" rid="F1">1A&#x2013;C</xref></bold>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p><bold>(A)</bold> Content of ptox after various treatments to the cell culture. <bold>(B)</bold> Measurement of ROS after various treatments to the cell culture by FACS. <bold>(C)</bold> Detection of ROS by confocal microscopy after staining with DCFDA of various treated cultures. The statistical analysis of the difference between fold changes was done using GraphPad Instat-3 software. Comparison between groups was done using one-way analysis of variance (ANOVA) followed by Student&#x2013;Newman&#x2013;Keuls test. Data were fitted using Sigma plot represented as means &#x00B1; SD. <italic>p</italic> &#x003C; 0.05 was accepted as level of significance; <sup>&#x2217;&#x2217;&#x2217;</sup> highly significant <italic>p</italic> &#x003C; 0.001; <sup>&#x2217;&#x2217;</sup> significant <italic>p</italic> &#x003C; 0.01; <sup>&#x2217;</sup> less significant <italic>p</italic> &#x003C; 0.05; NS not significant for <italic>p</italic> > 0.05.</p></caption>
<graphic xlink:href="fpls-08-00164-g001.tif"/>
</fig>
</sec>
<sec><title>Transcript Assay of Selected Ptox Biosynthetic Pathway Genes After Independent MeJa and the Combination of DPI, DETC, and MeJA Treatment</title>
<p>To understand how MeJA induced ROS generation affected the ptox biosynthesis consequently increasing the ptox content, the expression pattern of 19 ptox biosynthetic pathway related genes was checked, in two sets of experiments viz. the first set of treatment was with only MeJA and the second set was a combination of MeJA, DPI, and DETC. Independent MeJA treatment up regulates all 19 selected ptox biosynthetic pathway genes, including five transcription factors related to ptox biosynthesis. Amongst these, <italic>PhCAD</italic>3 was significantly up regulated, followed by <italic>PhCAD</italic>4<italic>, C</italic>4<italic>H, SDR, SDG, DPO, NAC</italic>3, and so on. Other transcripts like <italic>PLR, AdMM</italic>, and <italic>mTERF</italic>1 were comparatively less up regulated after the treatment. Interestingly, when ROS was inhibited in the second set, viz. the combination treatment of MeJA, DPI and DETC, up regulation of only three genes, namely <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3 were decreased significantly (<bold>Figure <xref ref-type="fig" rid="F2">2A</xref></bold>). Meanwhile, other 16 genes remained unaltered and exhibited almost same expression pattern like independent MeJA treatment (<bold>Figure <xref ref-type="fig" rid="F2">2A</xref></bold>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p><bold>Transcript assay of 19 ptox biosynthetic pathway genes after various treatments. (A)</bold> Expression pattern after MeJA and MeJA+DPI+DETC ttreatment. <bold>(B)</bold> Expression pattern after CCCP and CCCP+DPI+DETC treatment. <bold>(C)</bold> Expression pattern after H<sub>2</sub>O<sub>2</sub> treatment. The statistical analysis of the difference between fold changes was done using GraphPad Instat-3 software. Comparison between groups was done using one-way analysis of variance (ANOVA) followed by Student&#x2013;Newman&#x2013;Keuls test. Data were fitted using Sigma plot represented as means &#x00B1; SD. <italic>p</italic> &#x003C; 0.05 was accepted as level of significance; <sup>&#x2217;&#x2217;&#x2217;</sup> highly significant <italic>p</italic> &#x003C; 0.001; <sup>&#x2217;&#x2217;</sup> significant <italic>p</italic> &#x003C; 0.01; <sup>&#x2217;</sup> less significant <italic>p</italic> &#x003C; 0.05; NS not significant for <italic>p</italic> > 0.05.</p></caption>
<graphic xlink:href="fpls-08-00164-g002.tif"/>
</fig>
</sec>
<sec><title>Transcript Assay of Selected Ptox Biosynthetic Pathway Genes After Independent CCCP, H<sub>2</sub>O<sub>2</sub>, and the Combined DPI, DETC, and CCCP Treatment</title>
<p>To further confirm the ROS-responsiveness of <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3, <italic>P. hexandrum</italic> culture was treated independently with CCCP and H<sub>2</sub>O<sub>2</sub> as well as with a combination treatment of CCCP, DPI, and DETC. Only three genes, namely, <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3 were significantly up regulated after CCCP and H<sub>2</sub>O<sub>2</sub> treatments. All other 16 genes were remained unaffected, although sometimes insignificant down regulation was noted. However, the genes like <italic>AdMM</italic>, <italic>PAL</italic>, and <italic>AP</italic>2-<italic>EREBP</italic>8 were down regulated insignificantly. While, the ROS in CCCP treated culture was inhibited with the combination treatment of DPI and DETC, only <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3 were affected and their up regulation was decreased significantly (<bold>Figure <xref ref-type="fig" rid="F2">2B</xref></bold>). However, for other 16 genes the results were similar to those obtained in the case of CCCP treatment alone (<bold>Figure <xref ref-type="fig" rid="F2">2B</xref></bold>). Again, the H<sub>2</sub>O<sub>2</sub> treatment of the cell culture revealed significant up regulation of only <italic>PhCAD</italic>3<italic>, PhCAD</italic>4, and <italic>NAC</italic>3 genes, however, <italic>AP</italic>2-<italic>EREBP</italic>8, <italic>AdMM</italic>, and <italic>PAL</italic> were down regulated after the treatment (<bold>Figure <xref ref-type="fig" rid="F2">2C</xref></bold>). All other selected genes remain unaffected after the treatment.</p>
</sec>
<sec><title>mRNA Stability Assay of <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3</title>
<p>mRNA stability level of 3 ROS-responsive genes, <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3 was checked after independent treatment with MeJA, CCCP, H<sub>2</sub>O<sub>2</sub> and the combination treatment of MeJA+DPI and DETC and CCCP +DPI and DETC. Three days old cell culture was mock treated with water and considered as a control. Cell treated with actinomycin D alone revealed that remaining mRNA significantly reduced after 4 h of actinomycin D treatment for <italic>PhCAD</italic>3 whereas for <italic>PhCAD</italic>4 and <italic>NAC</italic>3 it significantly reduced after 2 h of treatment. For all three genes after 12 h of treatment there was almost no remaining mRNA (<bold>Figure <xref ref-type="fig" rid="F3">3</xref></bold>). Hence, we check the mRNA stability for all three genes up to 12 h after the respective treatments. MeJA treatment resulted in the higher transcript level of <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3 after actinomycin D treatment which indicated that MeJA increased the mRNA stability of <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3 up to 1.61-, 1.9-, and 2.46-fold, respectively, after 2 h. In two separate, independent treatment with CCCP and H<sub>2</sub>O<sub>2</sub> induced ROS, which in turn increased the mRNA stability of <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3. But when ROS was inhibited with DPI and DETC in MeJA and CCCP treated cultures, then mRNA stability of <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3 were decreased significantly.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p><bold>mRNA Stability assay of three ROS responsive genes viz, <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3 after various treatments. (A)</bold> mRNA stability of <italic>PhCAD</italic>3. <bold>(B)</bold> mRNA stability of <italic>PhCAD</italic>4. <bold>(C)</bold> mRNA stability of <italic>NAC</italic>3. Data are the mean &#x00B1; SD for three individual experiments.</p></caption>
<graphic xlink:href="fpls-08-00164-g003.tif"/>
</fig>
</sec>
<sec><title>miRNA Transcript Assay after Various Treatments</title>
<p>We were also interested to explore the mechanism of MeJA mediated up regulation of upstream and downstream genes of <italic>PhCAD</italic>s which are not regulated by MeJA produced ROS. It was well established that miRNAs play a vital role as a <italic>trans</italic>-acting regulator of gene expression (<xref ref-type="bibr" rid="B11">Carlborg and Haley, 2004</xref>). Here, we selected eight miRNAs from our previously published whole transcriptome data (<xref ref-type="bibr" rid="B6">Bhattacharyya et al., 2013</xref>) after KEGG pathway analysis. These eight selected miRNAs were specifically targeted to the secondary metabolite pathway specially phenylpropanoid pathway. Only five miRNAs namely miR172i, miR035, miR1438, miR2275, miR8291 were significantly down regulated after MeJA treatment (<bold>Figure <xref ref-type="fig" rid="F4">4A</xref></bold>). But all these eight miRNAs were completely non-responsive to CCCP and H<sub>2</sub>O<sub>2</sub> induced ROS (<bold>Figures <xref ref-type="fig" rid="F4">4B,C</xref></bold>). Furthermore, these miRNAs also noted with any effect when ROS was inhibited by combining DPI and DETC in the MeJA and CCCP treated cultures (<bold>Figures <xref ref-type="fig" rid="F4">4A,B</xref></bold>). These five miRNAs are interfering with the target gene expression, namely, four <italic>coumarate ligage</italic> (4<italic>CL</italic>), <italic>Cytochrome P</italic>450, <italic>Caffeoyl&#x2013;Co</italic>A <italic>methyltransferase</italic>, <italic>Cytochrome P</italic>450, and <italic>Chalclone synthase</italic> and the decline in the level of these miRNAs may bring about an up-regulation of the target genes.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p><bold>Effect of MeJA and other ROS generating compound&#x2019;s treatment on the expression of eight selected miRNAs. (A)</bold> RT-qPCR analysis of MeJA and MeJA+DPI+DETC treatment. <bold>(B)</bold> RT-qPCR analysis after CCCP and CCCP+DPI+DETC treatment. <bold>(C)</bold> RT-qPCR analysis after H<sub>2</sub>O<sub>2</sub> treatment. The statistical analysis of the difference between fold changes was done using GraphPad Instat-3 software. Comparison between groups was done using one-way analysis of variance (ANOVA) followed by Student&#x2013;Newman&#x2013;Keuls test. Data were fitted using Sigma plot represented as means &#x00B1; SD. <italic>p</italic> &#x003C; 0.05 was accepted as a level of significance; <sup>&#x2217;&#x2217;&#x2217;</sup> highly significant <italic>p</italic> &#x003C; 0.001; <sup>&#x2217;&#x2217;</sup> significant <italic>p</italic> &#x003C; 0.01; <sup>&#x2217;</sup> less significant <italic>p</italic> &#x003C; 0.05; NS not significant for <italic>p</italic> > 0.05. miRNA1, miR172i; miRNA2, miR1873; miRNA3, miR5538; miRNA4, miR035; miRNA5, miR5532; miRNA6, miR1438; miRNA7, miR2275; miRNA8, miR8291.</p></caption>
<graphic xlink:href="fpls-08-00164-g004.tif"/>
</fig>
</sec>
</sec>
<sec><title>Discussion</title>
<p>It is well established that MeJA is a signal molecule in plant defense responses and an effective inducer of secondary metabolite accumulation in plant cell cultures by means of ROS as a secondary signaling molecule. According to <xref ref-type="bibr" rid="B45">You and Chan (2015)</xref> during stress condition ROS plays a vital role in the regulation of complex signaling network of plant stress response. It was also reported by <xref ref-type="bibr" rid="B44">Wang and Wu, 2005</xref> that MeJA also induced the production of H<sub>2</sub>O<sub>2</sub>, intracellular malondialdehyde content and lipoxygenase. ROS also regulates the gene expression, translation, metabolism, and turnover (<xref ref-type="bibr" rid="B36">Singh et al., 2016</xref>). Exogenous application of MeJA also alters the stomatal closure by ROS where ROS inhibitor DPI prohibited the stomatal closure (<xref ref-type="bibr" rid="B38">Suhita et al., 2004</xref>). In this study, we explore the mechanism through which MeJA affects the increased accumulation of ptox. Previously, we have reported that MeJA significantly induces accumulation of ptox by up regulating the genes in the ptox biosynthetic pathway (<xref ref-type="bibr" rid="B6">Bhattacharyya et al., 2013</xref>, <xref ref-type="bibr" rid="B4">2016</xref>). However, the molecular mechanism of MeJA-induced expression of ptox biosynthetic pathway genes is still to be elucidated. In this study ROS has been detected by the FACS and confocal microscopy in MeJA treated <italic>P. hexandrum</italic> cell culture which was simultaneous to the enhanced ptox accumulation (<bold>Figures <xref ref-type="fig" rid="F1">1A&#x2013;C</xref></bold>). Results also indicate the enhanced ptox accumulation in CCCP and H<sub>2</sub>O<sub>2</sub> treated <italic>P. hexandrum</italic> cell cultures which may be attributed to the enhanced ROS production (<bold>Figures <xref ref-type="fig" rid="F1">1A&#x2013;C</xref></bold>). To further confirm the involvement of ROS in ptox accumulation, in both MeJA and CCCP treated cultures, ROS was inhibited by DPI and DETC and that led to the lower degree of ptox accumulation. This observation confirmed the involvement of MeJA induced ROS in increased accumulation of ptox.</p>
<p>It was reported earlier that ROS plays a significant role as a signaling molecule in plant development, abiotic and biotic stress management, photorespiration and photosynthesis, etc. (<xref ref-type="bibr" rid="B31">Noctor and Foyer, 1998</xref>; <xref ref-type="bibr" rid="B1">Apel and Hirt, 2004</xref>; <xref ref-type="bibr" rid="B29">Mittler et al., 2004</xref>).</p>
<p>To understand how MeJA induced ROS affect the ptox biosynthetic pathway genes consequently up accumulating ptox biosynthesis, the expression pattern of 19 ptox biosynthetic pathway genes was checked at transcript level after the MeJA treatment. Results revealed that all these 19 genes were up regulated after the MeJA treatment. Interestingly, when MeJA induced ROS was inhibited by DPI and DETC treatment, consequently, the up regulation of three genes, namely <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3 was decreased significantly, whereas other 13 genes were noted with the almost same rate of up regulation as obtained after MeJA treatment without ROS scavenging (<bold>Figure <xref ref-type="fig" rid="F2">2A</xref></bold>). Hence, it can be assumed that MeJA induced ROS affect the regulation of <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3. To confirm the ROS-responsiveness of these three genes, we further treated the culture with CCCP, which induced the ROS generation (<xref ref-type="bibr" rid="B14">Chaudhari et al., 2007</xref>; <xref ref-type="bibr" rid="B24">Ji et al., 2016</xref>) as well as with H<sub>2</sub>O<sub>2.</sub> Results indicated that only three genes, namely, <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3, were significantly up regulated after the treatment amongst all 19 genes (<bold>Figures <xref ref-type="fig" rid="F2">2B,C</xref></bold>). Furthermore, when ROS generated in CCCP treated culture was inhibited by DPI and DETC treatment, the up regulation of these three genes were deceased significantly. Together, it can be deduced that MeJA induced ROS is the responsible factor for up regulation of these three ROS-responsive genes namely <italic>PhCAD</italic>3<italic>, PhCAD</italic>4, and <italic>NAC</italic>3. In our previous study, we have demonstrated that these two ROS-sensitive isoforms of <italic>PhCAD</italic>, viz. <italic>PhCAD</italic>3 and <italic>PhCAD</italic>4, were specifically responsible for ptox biosynthesis (<xref ref-type="bibr" rid="B4">Bhattacharyya et al., 2016</xref>).</p>
<p>We further investigated the underlying mechanism through which ROS-responsive genes of the ptox biosynthetic pathway were regulated by ROS. It is well known that the regulation of mRNA decay is a major checkpoint for controlling the expression level of different genes (<xref ref-type="bibr" rid="B21">Guhaniyogi and Brewer, 2001</xref>; <xref ref-type="bibr" rid="B35">Shim and Karin, 2002</xref>). According to <xref ref-type="bibr" rid="B16">Chung et al. (2008)</xref> the mRNA stability of a particular gene can be altered by ROS. They showed that H<sub>2</sub>O<sub>2</sub> treatment increases the mRNA stability of the <italic>SOS</italic>1 gene in <italic>A. thaliana</italic>. In our study, the mRNA stability of <italic>PhCAD</italic>3<italic>, PhCAD</italic>4, and <italic>NAC</italic>3 were increased after independent MeJA, CCCP, and H<sub>2</sub>O<sub>2</sub> treatment. Further, when ROS generated in MeJA and CCCP treated culture, was inhibited by DPI and DETC, the mRNA stability of these three genes was decreased (<bold>Figure <xref ref-type="fig" rid="F3">3</xref></bold>). That observation indicates that MeJA induced ROS up regulates <italic>PhCAD</italic>3<italic>, PhCAD</italic>4, and <italic>NAC</italic>3 by increasing their mRNA stability.</p>
<p>We also proposed the possible mechanism of MeJA mediated up regulation of upstream and downstream genes of PhCADs which are not regulated by MeJA produced ROS. According to Carlborg and Haley, (2004) the differential expression of genes can result from <italic>cis</italic>- and/or <italic>trans</italic>-regulatory changes, leading to epistatic effects. miRNA plays a vital role as a <italic>trans</italic>-acting regulator of gene expression. It was previously reported that miR163 plays important role in plant secondary metabolism (<xref ref-type="bibr" rid="B30">Ng et al., 2011</xref>). <xref ref-type="bibr" rid="B33">Robert et al. (2011)</xref> also reported that miR163 modulates the secondary metabolite pathway from camalexin toward glucosinolates. It was suggested earlier that biosynthesis of benzylisoquinoline alkaloids were might be regulated by pso-miR13, pso-miR2161, and pso-miR408 in <italic>Papaver somniferum</italic> (<xref ref-type="bibr" rid="B8">Boke et al., 2015</xref>).</p>
<p>In our study, among eight selected miRNAs, which are targeted to the phenylpropanoid pathway genes, only five miRNAs namely miR172i, miR035, miR1438, miR2275, miR8291 were significantly down regulated after MeJA treatment. Heovere, H<sub>2</sub>O<sub>2</sub> as well as CCCP induced ROS, did not show any effect on these eight miRNAs (<bold>Figure <xref ref-type="fig" rid="F4">4</xref></bold>). Hence, these can be concluded that these five down regulated miRNAs were not regulated by the MeJA induced ROS. These five miRNAs are targeted to four <italic>coumarate ligage</italic> [4<italic>CL</italic>], <italic>Cytochrome P</italic>450, <italic>Caffeoyl&#x2013;Co</italic>A <italic>methyltransferase</italic>, <italic>Cytochrome P</italic>450, and <italic>C. synthase</italic> as identified by KEGG analysis in our previous report (<xref ref-type="bibr" rid="B4">Bhattacharyya et al., 2016</xref>; <xref ref-type="bibr" rid="B7">Biswas et al., 2016</xref>). So the down regulation of these ROS non-responsive miRNA in trun bring about the up regulation ptox biosynthetic pathway genes. As we noted here, almost all genes located upstream and downstream of <italic>PhCAD</italic>s, were ROS non-responsive whereas, <italic>PhCAD</italic>s are ROS-responsive. Again, five above mentioned ROS non-responsive miRNAs were also targeted to the genes up- and downstream of <italic>PhCAD</italic>s. These five miRNAs interfere with the target genes expression and the decline in the level of these microRNAs may bring about an up-regulation of the ptox biosynthetic pathway genes. Hence it can be concluded that may be miRNA is just one of the another way to regulate the other sixteen ROS non-responsive genes of the ptox biosynthetic pathway.</p>
</sec>
<sec><title>Conclusion</title>
<p>Taken together, it can be concluded that MeJA can up regulate the ptox biosynthetic genes by two possible ways, one through increasing the mRNA stability of <italic>PhCAD</italic>3, <italic>PhCAD</italic>4, and <italic>NAC</italic>3 by MeJA induced ROS and another through the down regulating some miRNAs which are targeted to other important genes of the ptox biosynthetic pathway.</p>
</sec>
<sec><title>Author Contributions</title>
<p>SH carried out the experimental work, analyzed the data, and draft the manuscript. DB helps to analyze additional data and performed initial experiments. SC conceived and designed the experiments and prepared the final manuscript.</p>
</sec>
<sec><title>Conflict of Interest Statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<ack>
<p>The authors thank Dr. P. S. Ahuja, Ex-Director, CSIR-IHBT, Palampur, and Ex-Director-General, CSIR, New Delhi, for the generous gift of fresh <italic>P. hexandrum</italic>. The authors would like to express their gratitude to the Director, CSIR-IICB, Kolkata. This work received financial support from the Council of Scientific and Industrial Research (CSIR), SH acknowledges UGC for fellowship.</p>
</ack>
<sec sec-type="supplementary material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="http://journal.frontiersin.org/article/10.3389/fpls.2017.00164/full#supplementary-material">http://journal.frontiersin.org/article/10.3389/fpls.2017.00164/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Table_1.DOC" id="SM1" mimetype="application/msword" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Table_2.DOC" id="SM2" mimetype="application/msword" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<ref-list>
<title>References</title>
<ref id="B1"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Apel</surname> <given-names>K.</given-names></name> <name><surname>Hirt</surname> <given-names>H.</given-names></name></person-group> (<year>2004</year>). <article-title>Reactive oxygen species: metabolism, oxidative stress, and signal transduction.</article-title> <source><italic>Annu. Rev. Plant Biol.</italic></source> <volume>55</volume> <fpage>373</fpage>&#x2013;<lpage>399</lpage>. <pub-id pub-id-type="doi">10.1146/annurev.arplant.55.031903.141701</pub-id></citation></ref>
<ref id="B2"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ayres</surname> <given-names>D. C.</given-names></name> <name><surname>Loike</surname> <given-names>J. D.</given-names></name></person-group> (<year>1990</year>). <source><italic>Lignans. Chemical, Biological and Clinical Properties</italic>.</source> <publisher-loc>Cambridge</publisher-loc>: <publisher-name>Cambridge University Press</publisher-name>.</citation></ref>
<ref id="B3"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Berim</surname> <given-names>A.</given-names></name> <name><surname>Spring</surname> <given-names>O.</given-names></name> <name><surname>Conrad</surname> <given-names>J.</given-names></name> <name><surname>Maitrejean</surname> <given-names>M.</given-names></name> <name><surname>Boland</surname> <given-names>W.</given-names></name> <name><surname>Petersen</surname> <given-names>M.</given-names></name></person-group> (<year>2005</year>). <article-title>Enhancement of lignan biosynthesis in suspension cultures of <italic>Linum nodiflorum</italic> by coronalon, indanoyl-isoleucine and methyl jasmonate.</article-title> <source><italic>Planta</italic></source> <volume>222</volume> <fpage>769</fpage>&#x2013;<lpage>776</lpage>. <pub-id pub-id-type="doi">10.1007/s00425-005-0019-9</pub-id></citation></ref>
<ref id="B4"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bhattacharyya</surname> <given-names>D.</given-names></name> <name><surname>Hazra</surname> <given-names>S.</given-names></name> <name><surname>Banerjee</surname> <given-names>A.</given-names></name> <name><surname>Datta</surname> <given-names>R.</given-names></name> <name><surname>Kumar</surname> <given-names>D.</given-names></name> <name><surname>Chakrabarti</surname> <given-names>S.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>Transcriptome-wide identification and characterization of CAD isoforms specific for podophyllotoxin biosynthesis from <italic>Podophyllum hexandrum</italic>.</article-title> <source><italic>Plant Mol. Biol.</italic></source> <volume>92</volume> <fpage>1</fpage>&#x2013;<lpage>23</lpage>. <pub-id pub-id-type="doi">10.1007/s11103-016-0492-5</pub-id></citation></ref>
<ref id="B5"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bhattacharyya</surname> <given-names>D.</given-names></name> <name><surname>Sinha</surname> <given-names>R.</given-names></name> <name><surname>Ghanta</surname> <given-names>S.</given-names></name> <name><surname>Chakraborty</surname> <given-names>A.</given-names></name> <name><surname>Hazra</surname> <given-names>S.</given-names></name> <name><surname>Chattopadhyay</surname> <given-names>S.</given-names></name></person-group> (<year>2012</year>). <article-title>Proteins differentially expressed in elicited cell suspension culture of <italic>Podophyllum hexandrum</italic> with enhanced podophyllotoxin content.</article-title> <source><italic>Proteome Sci.</italic></source> <volume>10</volume>:<issue>34</issue>. <pub-id pub-id-type="doi">10.1186/1477-5956-10-34</pub-id></citation></ref>
<ref id="B6"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bhattacharyya</surname> <given-names>D.</given-names></name> <name><surname>Sinha</surname> <given-names>R.</given-names></name> <name><surname>Hazra</surname> <given-names>S.</given-names></name> <name><surname>Datta</surname> <given-names>R.</given-names></name> <name><surname>Chattopadhyay</surname> <given-names>S.</given-names></name></person-group> (<year>2013</year>). <article-title>De novo transcriptome analysis using 454 pyrosequencing of the Himalayan Mayapple, <italic>Podophyllum hexandrum</italic>.</article-title> <source><italic>BMC Genomics</italic></source> <volume>14</volume>:<issue>748</issue>. <pub-id pub-id-type="doi">10.1186/1471-2164-14-748</pub-id></citation></ref>
<ref id="B7"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Biswas</surname> <given-names>S.</given-names></name> <name><surname>Hazra</surname> <given-names>S.</given-names></name> <name><surname>Chattopadhyay</surname> <given-names>S.</given-names></name></person-group> (<year>2016</year>). <article-title>Identification of conserved miRNAs and their putative target genes in <italic>Podophyllum hexandrum</italic> (Himalayan Mayapple).</article-title> <source><italic>Plant Gene</italic></source> <volume>6</volume> <fpage>82</fpage>&#x2013;<lpage>89</lpage>. <pub-id pub-id-type="doi">10.1016/j.plgene.2016.04.002</pub-id></citation></ref>
<ref id="B8"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Boke</surname> <given-names>H.</given-names></name> <name><surname>Ozhuner</surname> <given-names>E.</given-names></name> <name><surname>Turktas</surname> <given-names>M.</given-names></name> <name><surname>Parmaksiz</surname> <given-names>I.</given-names></name> <name><surname>Ozcan</surname> <given-names>S.</given-names></name> <name><surname>Unver</surname> <given-names>T.</given-names></name></person-group> (<year>2015</year>). <article-title>Regulation of the alkaloid biosynthesis by miRNA in Opium poppy.</article-title> <source><italic>Plant Biotechnol. J.</italic></source> <volume>13</volume> <fpage>409</fpage>&#x2013;<lpage>420</lpage>. <pub-id pub-id-type="doi">10.1111/pbi.12346</pub-id></citation></ref>
<ref id="B9"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Buss</surname> <given-names>A. D.</given-names></name> <name><surname>Waigh</surname> <given-names>R. D.</given-names></name></person-group> (<year>1995</year>). <article-title>&#x201C;Natural products as leads for new pharmaceuticals,&#x201D; in</article-title> <source><italic>Burger&#x2019;s Medicinal Chemistry and Drug Discovery Principles and Practice</italic>,</source> <role>ed.</role> <person-group person-group-type="editor"><name><surname>Wolff</surname> <given-names>M. E.</given-names></name></person-group> (<publisher-loc>New York, NY</publisher-loc>: <publisher-name>Wiley</publisher-name>), <fpage>983</fpage>&#x2013;<lpage>1033</lpage>.</citation></ref>
<ref id="B10"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Canela</surname> <given-names>C.</given-names></name> <name><surname>Moraesb</surname> <given-names>R. M.</given-names></name> <name><surname>Dayana</surname> <given-names>F. E.</given-names></name> <name><surname>Ferreira</surname> <given-names>D.</given-names></name></person-group> (<year>2000</year>). <article-title>Podophyllotoxin.</article-title> <source><italic>Phytochemistry.</italic></source> <volume>54</volume> <fpage>115</fpage>&#x2013;<lpage>120</lpage>. <pub-id pub-id-type="doi">10.1016/S0031-9422(00)00094-7</pub-id></citation></ref>
<ref id="B11"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Carlborg</surname> <given-names>O.</given-names></name> <name><surname>Haley</surname> <given-names>C. S.</given-names></name></person-group> (<year>2004</year>). <article-title>Epistasis: too often neglected in complex trait studies?</article-title> <source><italic>Nat. Rev. Genet.</italic></source> <volume>5</volume> <fpage>618</fpage>&#x2013;<lpage>625</lpage>. <pub-id pub-id-type="doi">10.1038/nrg1407</pub-id></citation></ref>
<ref id="B12"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chakraborty</surname> <given-names>A.</given-names></name> <name><surname>Bhattacharya</surname> <given-names>D.</given-names></name> <name><surname>Ghanta</surname> <given-names>S.</given-names></name> <name><surname>Chattopadhyay</surname> <given-names>S.</given-names></name></person-group> (<year>2010</year>). <article-title>An efficient protocol for in vitro regeneration of <italic>Podophyllum hexandrum</italic>, a critically endangered medicinal plant.</article-title> <source><italic>Indian J. Biotechnol.</italic></source> <volume>9</volume> <fpage>217</fpage>&#x2013;<lpage>220</lpage>.</citation></ref>
<ref id="B13"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chattopadhyay</surname> <given-names>S.</given-names></name> <name><surname>Mehra</surname> <given-names>R. S.</given-names></name> <name><surname>Srivastava</surname> <given-names>A. K.</given-names></name> <name><surname>Bhojwani</surname> <given-names>S. S.</given-names></name> <name><surname>Bisaria</surname> <given-names>V. S.</given-names></name></person-group> (<year>2003</year>). <article-title>Effect of major nutrients on podophyllotoxin production in <italic>Podophyllum hexandrum</italic> suspension cultures.</article-title> <source><italic>Appl. Microbiol. Biotechnol.</italic></source> <volume>60</volume> <fpage>541</fpage>&#x2013;<lpage>546</lpage>. <pub-id pub-id-type="doi">10.1007/s00253-002-1149-7</pub-id></citation></ref>
<ref id="B14"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chaudhari</surname> <given-names>A. A.</given-names></name> <name><surname>Seol</surname> <given-names>J. W.</given-names></name> <name><surname>Kim</surname> <given-names>S. J.</given-names></name> <name><surname>Lee</surname> <given-names>Y. J.</given-names></name> <name><surname>Kang</surname> <given-names>H. S.</given-names></name> <name><surname>Kim</surname> <given-names>I. S.</given-names></name><etal/></person-group> (<year>2007</year>). <article-title>Reactive oxygen species regulate Bax translocation and mitochondrial transmembrane potential, a possible mechanism for enhanced TRAIL-induced apoptosis by CCCP.</article-title> <source><italic>Oncol. Rep.</italic></source> <volume>18</volume> <fpage>71</fpage>&#x2013;<lpage>76</lpage>.</citation></ref>
<ref id="B15"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chen</surname> <given-names>R.</given-names></name> <name><surname>Li</surname> <given-names>Q.</given-names></name> <name><surname>Tan</surname> <given-names>H.</given-names></name> <name><surname>Chen</surname> <given-names>J.</given-names></name> <name><surname>Xiao</surname> <given-names>Y.</given-names></name> <name><surname>Ma</surname> <given-names>R.</given-names></name><etal/></person-group> (<year>2015</year>). <article-title>Gene-to-metabolite network for biosynthesis of lignans in MeJA-elicited Isatis indigotica hairy root cultures.</article-title> <source><italic>Front. Plant Sci.</italic></source> <volume>6</volume>:<issue>952</issue>. <pub-id pub-id-type="doi">10.3389/fpls.2015.00952</pub-id></citation></ref>
<ref id="B16"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chung</surname> <given-names>J. S.</given-names></name> <name><surname>Zhu</surname> <given-names>J. K.</given-names></name> <name><surname>Bressan</surname> <given-names>R. A.</given-names></name> <name><surname>Hasegawa</surname> <given-names>P. M.</given-names></name> <name><surname>Shi</surname> <given-names>H.</given-names></name></person-group> (<year>2008</year>). <article-title>Reactive oxygen species mediate Na+-induced SOS1 mRNA stability in <italic>Arabidopsis</italic>.</article-title> <source><italic>Plant J.</italic></source> <volume>53</volume> <fpage>554</fpage>&#x2013;<lpage>565</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-313X.2007.03364.x</pub-id></citation></ref>
<ref id="B17"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Datta</surname> <given-names>R.</given-names></name> <name><surname>Kumar</surname> <given-names>D.</given-names></name> <name><surname>Sultana</surname> <given-names>A.</given-names></name> <name><surname>Hazra</surname> <given-names>S.</given-names></name> <name><surname>Bhattacharyya</surname> <given-names>D.</given-names></name> <name><surname>Chattopadhyay</surname> <given-names>S.</given-names></name></person-group> (<year>2015</year>). <article-title>Glutathione regulates 1-aminocyclopropane-1-carboxylate synthase transcription via wrky33 and 1-aminocyclopropane-1-carboxylate oxidase by modulating messenger RNA stability to induce ethylene synthesis during stress.</article-title> <source><italic>Plant Physiol.</italic></source> <volume>169</volume> <fpage>2963</fpage>&#x2013;<lpage>2981</lpage>. <pub-id pub-id-type="doi">10.1104/pp.15.01543</pub-id></citation></ref>
<ref id="B18"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dogra</surname> <given-names>V.</given-names></name> <name><surname>Bagler</surname> <given-names>G.</given-names></name> <name><surname>Sreenivasulu</surname> <given-names>Y.</given-names></name></person-group> (<year>2015</year>). <article-title>Re-analysis of protein data reveals the germination pathway and up accumulation mechanism of cell wall hydrolases during the radicle protrusion step of seed germination in <italic>Podophyllum hexandrum</italic>- a high altitude plant.</article-title> <source><italic>Front. Plant Sci.</italic></source> <volume>6</volume>:<issue>874</issue>. <pub-id pub-id-type="doi">10.3389/fpls.2015.00874</pub-id></citation></ref>
<ref id="B19"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fleming</surname> <given-names>R. A.</given-names></name> <name><surname>Miller</surname> <given-names>A. A.</given-names></name> <name><surname>Steward</surname> <given-names>C. F.</given-names></name></person-group> (<year>1989</year>). <article-title>Etoposide: an update.</article-title> <source><italic>Clin. Pharm.</italic></source> <volume>8</volume> <fpage>274</fpage>&#x2013;<lpage>293</lpage>.</citation></ref>
<ref id="B20"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gordaliza</surname> <given-names>M.</given-names></name> <name><surname>Garcia</surname> <given-names>P. A.</given-names></name> <name><surname>del Corral</surname> <given-names>J. M. M.</given-names></name> <name><surname>Castro</surname> <given-names>M. A.</given-names></name> <name><surname>Gomez-Zurit</surname> <given-names>M. A.</given-names></name></person-group> (<year>2004</year>). <article-title>Podophyllotoxin: distribution, sources, applications and new cytotoxic derivatives.</article-title> <source><italic>Toxicon</italic></source> <volume>44</volume> <fpage>441</fpage>&#x2013;<lpage>459</lpage>. <pub-id pub-id-type="doi">10.1016/j.toxicon.2004.05.008</pub-id></citation></ref>
<ref id="B21"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Guhaniyogi</surname> <given-names>J.</given-names></name> <name><surname>Brewer</surname> <given-names>G.</given-names></name></person-group> (<year>2001</year>). <article-title>Regulation of mRNA stability in mammalian cells.</article-title> <source><italic>Gene</italic></source> <volume>265</volume> <fpage>11</fpage>&#x2013;<lpage>23</lpage>. <pub-id pub-id-type="doi">10.1016/S0378-1119(01)00350-X</pub-id></citation></ref>
<ref id="B22"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Heyenga</surname> <given-names>A. G.</given-names></name> <name><surname>Lucas</surname> <given-names>J. A.</given-names></name> <name><surname>Dewick</surname> <given-names>P. M.</given-names></name></person-group> (<year>1990</year>). <article-title>Production of tumour-inhibitory lignans in callus cultures of <italic>Podophyllum hexandrum</italic>.</article-title> <source><italic>Plant Cell Rep.</italic></source> <volume>9</volume> <fpage>382</fpage>&#x2013;<lpage>385</lpage>. <pub-id pub-id-type="doi">10.1007/BF00232404</pub-id></citation></ref>
<ref id="B23"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Izeradjene</surname> <given-names>K.</given-names></name> <name><surname>Douglas</surname> <given-names>L.</given-names></name> <name><surname>Tillman</surname> <given-names>D. M.</given-names></name> <name><surname>Delaney</surname> <given-names>A. B.</given-names></name> <name><surname>Houghton</surname> <given-names>J. A.</given-names></name></person-group> (<year>2005</year>). <article-title>Reactive oxygen species regulate caspase activation in tumor necrosis factor&#x2013;related apoptosis-inducing ligand&#x2013;resistant human colon carcinoma cell lines.</article-title> <source><italic>Cancer Res.</italic></source> <volume>65</volume> <fpage>7436</fpage>&#x2013;<lpage>7445</lpage>. <pub-id pub-id-type="doi">10.1158/0008-5472.CAN-04-2628</pub-id></citation></ref>
<ref id="B24"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ji</surname> <given-names>W.</given-names></name> <name><surname>Wei</surname> <given-names>S.</given-names></name> <name><surname>Hao</surname> <given-names>P.</given-names></name> <name><surname>Xing</surname> <given-names>J.</given-names></name> <name><surname>Yuan</surname> <given-names>Q.</given-names></name> <name><surname>Wang</surname> <given-names>J.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>aldehyde dehydrogenase 2 has cardioprotective effects on myocardial ischaemia/reperfusion injury via suppressing mitophagy.</article-title> <source><italic>Front. Pharmacol.</italic></source> <volume>7</volume>:<issue>101</issue>. <pub-id pub-id-type="doi">10.3389/fphar.2016.00101</pub-id></citation></ref>
<ref id="B25"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kadkade</surname> <given-names>P. G.</given-names></name></person-group> (<year>1981</year>). <article-title>Formation of podophyllotoxins by <italic>Podophyllum peltatum</italic> tissue cultures.</article-title> <source><italic>Naturwissenschaften</italic></source> <volume>68</volume> <fpage>481</fpage>&#x2013;<lpage>482</lpage>. <pub-id pub-id-type="doi">10.1007/BF01047526</pub-id></citation></ref>
<ref id="B26"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kartal</surname> <given-names>M.</given-names></name> <name><surname>Kartal</surname> <given-names>B.</given-names></name> <name><surname>Indrayanto</surname> <given-names>G.</given-names></name> <name><surname>Alfermann</surname> <given-names>A. W.</given-names></name></person-group> (<year>2004</year>). <article-title>Comparison of different extraction methods for the determination of podophyllotoxin and 6-methoxypodophyllotoxin in <italic>Linum</italic> species.</article-title> <source><italic>J Pharm. Biomed. Anal.</italic></source> <volume>35</volume> <fpage>441</fpage>&#x2013;<lpage>447</lpage>. <pub-id pub-id-type="doi">10.1016/j.jpba.2004.01.016</pub-id></citation></ref>
<ref id="B27"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kutney</surname> <given-names>J. P.</given-names></name></person-group> (<year>1999</year>). <article-title>Biotechnology and synthetic chemistry&#x2014;routes to clinically important compounds.</article-title> <source><italic>Pure Appl. Chem.</italic></source> <volume>71</volume> <fpage>1025</fpage>&#x2013;<lpage>1032</lpage>. <pub-id pub-id-type="doi">10.1351/pac199971061025</pub-id></citation></ref>
<ref id="B28"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lenka</surname> <given-names>S. K.</given-names></name> <name><surname>Nims</surname> <given-names>N. E.</given-names></name> <name><surname>Vongpaseuth</surname> <given-names>K.</given-names></name> <name><surname>Boshar</surname> <given-names>R. A.</given-names></name> <name><surname>Roberts</surname> <given-names>S. C.</given-names></name> <name><surname>Walker</surname> <given-names>E.</given-names></name></person-group> (<year>2015</year>). <article-title>Jasmonate-responsive expression of paclitaxel biosynthesis genes in <italic>Taxus cuspidata</italic> cultured cells is negatively regulated by the bHLH transcription factors TcJAMYC1, TcJAMYC2, and TcJAMYC4.</article-title> <source><italic>Front. Plant Sci.</italic></source> <volume>6</volume>:<issue>115</issue>. <pub-id pub-id-type="doi">10.3389/fpls.2015.00115</pub-id></citation></ref>
<ref id="B29"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mittler</surname> <given-names>R.</given-names></name> <name><surname>Vanderauwera</surname> <given-names>S.</given-names></name> <name><surname>Gollery</surname> <given-names>M.</given-names></name> <name><surname>Van Breusegem</surname> <given-names>F.</given-names></name></person-group> (<year>2004</year>). <article-title>Reactive oxygen gene network of plants.</article-title> <source><italic>Trends Plant Sci.</italic></source> <volume>9</volume> <fpage>490</fpage>&#x2013;<lpage>498</lpage>. <pub-id pub-id-type="doi">10.1016/j.tplants.2004.08.009</pub-id></citation></ref>
<ref id="B30"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ng</surname> <given-names>D. W.</given-names></name> <name><surname>Zhang</surname> <given-names>C.</given-names></name> <name><surname>Miller</surname> <given-names>M.</given-names></name> <name><surname>Palmer</surname> <given-names>G.</given-names></name> <name><surname>Whiteley</surname> <given-names>M.</given-names></name> <name><surname>Tholl</surname> <given-names>D.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>Cis- and trans-regulation of miR163 and target genes confers natural variation of secondary metabolites in two <italic>Arabidopsis</italic> species and their allopolyploids.</article-title> <source><italic>Plant Cell</italic></source> <volume>23</volume> <fpage>1729</fpage>&#x2013;<lpage>1740</lpage>. <pub-id pub-id-type="doi">10.1105/tpc.111.083915</pub-id></citation></ref>
<ref id="B31"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Noctor</surname> <given-names>G.</given-names></name> <name><surname>Foyer</surname> <given-names>C. H.</given-names></name></person-group> (<year>1998</year>). <article-title>Ascorbate and glutathione: keeping active oxygen under control.</article-title> <source><italic>Annu. Rev. Plant Physiol. Plant Mol. Biol.</italic></source> <volume>49</volume> <fpage>249</fpage>&#x2013;<lpage>279</lpage>. <pub-id pub-id-type="doi">10.1146/annurev.arplant.49.1.249</pub-id></citation></ref>
<ref id="B32"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Orozco-C&#x00E1;rdenas</surname> <given-names>M. L.</given-names></name> <name><surname>Narv&#x00E1;ez</surname> <given-names>V. J.</given-names></name> <name><surname>Ryan</surname> <given-names>C. A.</given-names></name></person-group> (<year>2001</year>). <article-title>Hydrogen peroxide acts as a second messenger for the induction of defense genes in tomato plants in response to wounding, systemin, and methyl jasmonate.</article-title> <source><italic>Plant Cell</italic></source> <volume>13</volume> <fpage>179</fpage>&#x2013;<lpage>191</lpage>. <pub-id pub-id-type="doi">10.2307/3871162</pub-id></citation></ref>
<ref id="B33"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Robert</surname> <given-names>S. A.</given-names></name> <name><surname>MacLean</surname> <given-names>D.</given-names></name> <name><surname>Jikumaru</surname> <given-names>Y.</given-names></name> <name><surname>Hill</surname> <given-names>L.</given-names></name> <name><surname>Yamaguchi</surname> <given-names>S.</given-names></name> <name><surname>Kamiya</surname> <given-names>Y.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates.</article-title> <source><italic>Plant J.</italic></source> <volume>67</volume> <fpage>218</fpage>&#x2013;<lpage>231</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-313X.2011.04591.x</pub-id></citation></ref>
<ref id="B34"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Seidel</surname> <given-names>V.</given-names></name> <name><surname>Windh&#x00F6;vel</surname> <given-names>J. G.</given-names></name> <name><surname>Eaton</surname> <given-names>A. W.</given-names></name> <name><surname>Alfermann</surname> <given-names>R. R.</given-names></name> <name><surname>Arroo</surname> <given-names>M.</given-names></name> <name><surname>Medarde</surname> <given-names>M.</given-names></name><etal/></person-group> (<year>2002</year>). <article-title>Biosynthesis of podophyllotoxin in <italic>Linum album</italic> cell cultures.</article-title> <source><italic>Planta</italic></source> <volume>215</volume> <fpage>1031</fpage>&#x2013;<lpage>1039</lpage>. <pub-id pub-id-type="doi">10.1007/s00425-002-0834-1</pub-id></citation></ref>
<ref id="B35"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Shim</surname> <given-names>J.</given-names></name> <name><surname>Karin</surname> <given-names>M.</given-names></name></person-group> (<year>2002</year>). <article-title>The control of mRNA stability in response to extracellular stimuli.</article-title> <source><italic>Mol. Cells</italic></source> <volume>14</volume> <fpage>323</fpage>&#x2013;<lpage>331</lpage>.</citation></ref>
<ref id="B36"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Singh</surname> <given-names>R.</given-names></name> <name><surname>Singh</surname> <given-names>S.</given-names></name> <name><surname>Parihar</surname> <given-names>P.</given-names></name> <name><surname>Mishra</surname> <given-names>R. K.</given-names></name> <name><surname>Tripathi</surname> <given-names>D. K.</given-names></name> <name><surname>Singh</surname> <given-names>V. P.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>Reactive Oxygen Species (ROS): beneficial companions of plants&#x2019; developmental processes.</article-title> <source><italic>Front. Plant Sci.</italic></source> <volume>7</volume>:<issue>1299</issue>. <pub-id pub-id-type="doi">10.3389/fpls.2016.01299</pub-id></citation></ref>
<ref id="B37"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Stahelin</surname> <given-names>H. F.</given-names></name> <name><surname>von Wartburg</surname> <given-names>A.</given-names></name></person-group> (<year>1991</year>). <article-title>The chemical and biological route from podophyllotoxin glucoside to etoposide.</article-title> <source><italic>Cancer Res.</italic></source> 5l, <fpage>5</fpage>&#x2013;<lpage>15</lpage>.</citation></ref>
<ref id="B38"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Suhita</surname> <given-names>D.</given-names></name> <name><surname>Raghavendra</surname> <given-names>A. S.</given-names></name> <name><surname>Kwak</surname> <given-names>J. M.</given-names></name> <name><surname>Vavasseur</surname> <given-names>A.</given-names></name></person-group> (<year>2004</year>). <article-title>Cytoplasmic alkalization precedes reactive oxygen species production during methyl jasmonate and abscisic acid-induced stomatal closure.</article-title> <source><italic>Plant Physiol.</italic></source> <volume>134</volume> <fpage>1536</fpage>&#x2013;<lpage>1545</lpage>. <pub-id pub-id-type="doi">10.1104/pp.103.032250</pub-id></citation></ref>
<ref id="B39"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Thoma</surname> <given-names>I.</given-names></name> <name><surname>Loeffler</surname> <given-names>C.</given-names></name> <name><surname>Sinha</surname> <given-names>A. K.</given-names></name> <name><surname>Gupta</surname> <given-names>M.</given-names></name> <name><surname>Krischke</surname> <given-names>M.</given-names></name> <name><surname>Steffan</surname> <given-names>B.</given-names></name><etal/></person-group> (<year>2003</year>). <article-title>Cyclopentenone isoprostanes induced by reactive oxygen species trigger defense gene activation and phytoalexin accumulation in plants.</article-title> <source><italic>Plant J.</italic></source> <volume>34</volume> <fpage>363</fpage>&#x2013;<lpage>375</lpage>. <pub-id pub-id-type="doi">10.1046/j.1365-313X.2003.01730.x</pub-id></citation></ref>
<ref id="B40"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>van Furden</surname> <given-names>B.</given-names></name> <name><surname>Humburg</surname> <given-names>A.</given-names></name> <name><surname>Fuss</surname> <given-names>E.</given-names></name></person-group> (<year>2005</year>). <article-title>Influence of methyl jasmonate on podophyllotoxin and 6-methoxypodophyllotoxin accumulation in <italic>Linum album</italic> cell suspension cultures.</article-title> <source><italic>Plant Cell Rep.</italic></source> <volume>24</volume> <fpage>312</fpage>&#x2013;<lpage>317</lpage>. <pub-id pub-id-type="doi">10.1007/s00299-005-0954-8</pub-id></citation></ref>
<ref id="B41"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>van Uden</surname> <given-names>W.</given-names></name> <name><surname>Pras</surname> <given-names>N.</given-names></name> <name><surname>Visser</surname> <given-names>J. F.</given-names></name> <name><surname>Malingr&#x00E9;</surname> <given-names>T. M.</given-names></name></person-group> (<year>1989</year>). <article-title>Detection and identification of podophyllotoxin produced by cell cultures derived from <italic>Podophyllum hexandrum</italic> royle.</article-title> <source><italic>Plant Cell Rep.</italic></source> <volume>8</volume> <fpage>165</fpage>&#x2013;<lpage>168</lpage>. <pub-id pub-id-type="doi">10.1007/BF00716832</pub-id></citation></ref>
<ref id="B42"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Varkonyi-Gasic</surname> <given-names>E.</given-names></name> <name><surname>Wu</surname> <given-names>R.</given-names></name> <name><surname>Wood</surname> <given-names>M.</given-names></name> <name><surname>Walton</surname> <given-names>E. F.</given-names></name> <name><surname>Hellens</surname> <given-names>R. P.</given-names></name></person-group> (<year>2007</year>). <article-title>Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs.</article-title> <source><italic>Plant Methods</italic></source> <volume>3</volume>:<issue>12</issue>. <pub-id pub-id-type="doi">10.1186/1746-4811-3-12</pub-id></citation></ref>
<ref id="B43"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Von Wartburg</surname> <given-names>A.</given-names></name> <name><surname>Stahelin</surname> <given-names>H. F.</given-names></name></person-group> (<year>1993</year>). <article-title>&#x201C;Etoposide,&#x201D; in</article-title> <source><italic>Chronicles of Drug Discovery</italic>,</source> <role>ed.</role> <person-group person-group-type="editor"><name><surname>Lednicer</surname> <given-names>D.</given-names></name></person-group> (<publisher-loc>Washington, DC</publisher-loc>: <publisher-name>American Chemical Society</publisher-name>), <fpage>349</fpage>&#x2013;<lpage>380</lpage>.</citation></ref>
<ref id="B44"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>J. W.</given-names></name> <name><surname>Wu</surname> <given-names>J. Y.</given-names></name></person-group> (<year>2005</year>). <article-title>Nitric Oxide is involved in methyl jasmonate-induced defense responses and secondary metabolism activities of <italic>Taxus</italic> cells.</article-title> <source><italic>Plant Cell Physiol.</italic></source> <volume>46</volume> <fpage>923</fpage>&#x2013;<lpage>930</lpage>. <pub-id pub-id-type="doi">10.1093/pcp/pci098</pub-id></citation></ref>
<ref id="B45"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>You</surname> <given-names>J.</given-names></name> <name><surname>Chan</surname> <given-names>Z.</given-names></name></person-group> (<year>2015</year>). <article-title>ROS regulation during abiotic stress responses in crop plants.</article-title> <source><italic>Front. Plant Sci.</italic></source> <volume>6</volume>:<issue>1092</issue>. <pub-id pub-id-type="doi">10.3389/fpls.2015.01092</pub-id></citation></ref>
<ref id="B46"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yousefzadi</surname> <given-names>M.</given-names></name> <name><surname>Sharifi</surname> <given-names>M.</given-names></name> <name><surname>Behmanesh</surname> <given-names>M.</given-names></name> <name><surname>Ghasempour</surname> <given-names>A.</given-names></name> <name><surname>Moyano</surname> <given-names>E.</given-names></name> <name><surname>Palazon</surname> <given-names>J.</given-names></name></person-group> (<year>2010</year>). <article-title>Salicylic acid improves podophyllotoxin production in cell cultures of <italic>Linum album</italic> by increasing the expression of genes related with its biosynthesis.</article-title> <source><italic>Biotechnol. Lett.</italic></source> <volume>32</volume> <fpage>1739</fpage>&#x2013;<lpage>1743</lpage>. <pub-id pub-id-type="doi">10.1007/s10529-010-0343-4</pub-id></citation></ref>
<ref id="B47"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname> <given-names>L.</given-names></name> <name><surname>Xing</surname> <given-names>D.</given-names></name></person-group> (<year>2008</year>). <article-title>Methyl jasmonate induces production of reactive oxygen species and alterations in mitochondrial dynamics that precede photosynthetic dysfunction and subsequent cell death.</article-title> <source><italic>Plant Cell Physiol.</italic></source> <volume>49</volume> <fpage>1092</fpage>&#x2013;<lpage>1111</lpage>. <pub-id pub-id-type="doi">10.1093/pcp/pcn086</pub-id></citation></ref>
</ref-list>
</back>
</article>