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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2016.01769</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The Sclerophyllous <italic>Eucalyptus camaldulensis</italic> and Herbaceous <italic>Nicotiana tabacum</italic> Have Different Mechanisms to Maintain High Rates of Photosynthesis</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Huang</surname> <given-names>Wei</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/183278/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Tong</surname> <given-names>You-Gui</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Yu</surname> <given-names>Guo-Yun</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Yang</surname> <given-names>Wei-Xian</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences</institution> <country>Mengla, China</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Economic Plants and Biotechnology, Kunming Institute of Botany, Chinese Academy of Sciences</institution> <country>Kunming, China</country></aff>
<aff id="aff3"><sup>3</sup><institution>Forestry Bureau of Dongchuan County</institution> <country>Kunming, China</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Antonio Ferrante, University of Milan, Italy</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Veronica De Micco, University of Naples Federico II, Italy; Daniele Massa, Council for Agricultural Research and Economics, Italy</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Wei Huang <email>huangwei&#x00040;mail.kib.ac.cn</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Plant Physiology, a section of the journal Frontiers in Plant Science</p></fn></author-notes>
<pub-date pub-type="epub">
<day>24</day>
<month>11</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="collection">
<year>2016</year>
</pub-date>
<volume>7</volume>
<elocation-id>1769</elocation-id>
<history>
<date date-type="received">
<day>04</day>
<month>08</month>
<year>2016</year>
</date>
<date date-type="accepted">
<day>10</day>
<month>11</month>
<year>2016</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2016 Huang, Tong, Yu and Yang.</copyright-statement>
<copyright-year>2016</copyright-year>
<copyright-holder>Huang, Tong, Yu and Yang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p>It is believed that high levels of mesophyll conductance (<italic>g</italic><sub>m</sub>) largely contribute to the high rates of photosynthesis in herbaceous C<sub>3</sub> plants. However, some sclerophyllous C<sub>3</sub> plants that display low levels of <italic>g</italic><sub>m</sub> have high rates of photosynthesis, and the underlying mechanisms responsible for high photosynthetic rates in sclerophyllous C<sub>3</sub> plants are unclear. In the present study, we examined photosynthetic characteristics in two high-photosynthesis plants (the sclerophyllous <italic>Eucalyptus camaldulensis</italic> and the herbaceous <italic>Nicotiana tabacum</italic>) using measurements of gas exchange and chlorophyll fluorescence. Under saturating light intensities, both species had similar rates of CO<sub>2</sub> assimilation at 400 &#x003BC;mol mol<sup>&#x02212;1</sup> CO<sub>2</sub> (<italic>A</italic><sub>400</sub>). However, <italic>E. camaldulensis</italic> exhibited significantly lower <italic>g</italic><sub>m</sub> and chloroplast CO<sub>2</sub> concentration (<italic>C</italic><sub>c</sub>) than <italic>N. tabacum</italic>. A quantitative analysis revealed that, in <italic>E. camaldulensis</italic>, the <italic>g</italic><sub>m</sub> limitation was the most constraining factor for photosynthesis. By comparison, in <italic>N. tabacum</italic>, the biochemical limitation was the strongest, followed by <italic>g</italic><sub>m</sub> and <italic>g</italic><sub>s</sub> limitations. In conjunction with a lower <italic>C</italic><sub>c</sub>, <italic>E. camaldulensis</italic> up-regulated the capacities of photorespiratory pathway and alternative electron flow. Furthermore, the rate of alternative electron flow was positively correlated with the rates of photorespiration and ATP supply from other flexible mechanisms, suggesting the important roles of photorespiratory pathway, and alternative electron flow in sustaining high rate of photosynthesis in <italic>E. camaldulensis</italic>. These results highlight the different mechanisms used to maintain high rates of photosynthesis in the sclerophyllous <italic>E. camaldulensis</italic> and the herbaceous <italic>N. tabacum</italic>.</p></abstract>
<kwd-group>
<kwd>alternative electron flow</kwd>
<kwd>CO<sub>2</sub> assimilation</kwd>
<kwd>mesophyll conductance</kwd>
<kwd>photorespiration</kwd>
<kwd>sclerophyllous</kwd>
</kwd-group>
<contract-num rid="cn001">31300332</contract-num>
<contract-sponsor id="cn001">National Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content></contract-sponsor>
<contract-sponsor id="cn002">Youth Innovation Promotion Association of the Chinese Academy of Sciences<named-content content-type="fundref-id">10.13039/501100004739</named-content></contract-sponsor>
<counts>
<fig-count count="8"/>
<table-count count="1"/>
<equation-count count="12"/>
<ref-count count="59"/>
<page-count count="12"/>
<word-count count="8206"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>In C<sub>3</sub> plants, rates of photosynthesis differ widely among species. For individual leaves or whole plants, photosynthetic capacity mainly depends upon their biochemical composition and morphology. Generally, plants with high rates of CO<sub>2</sub> assimilation have higher levels of cytochrome <italic>f</italic>, ATP synthase, Rubisco, and other Calvin-Benson cycle enzymes (Evans, <xref ref-type="bibr" rid="B10">1987</xref>; Terashima and Evans, <xref ref-type="bibr" rid="B45">1988</xref>; Hikosaka, <xref ref-type="bibr" rid="B23">1996</xref>; Hikosaka and Terashima, <xref ref-type="bibr" rid="B24">1996</xref>; Yamori et al., <xref ref-type="bibr" rid="B56">2010</xref>, <xref ref-type="bibr" rid="B57">2011</xref>). The rate of CO<sub>2</sub> assimilation is maximized in leaves that usually have high levels of stomatal conductance (<italic>g</italic><sub>s</sub>) and mesophyll conductance (<italic>g</italic><sub>m</sub>), which increase CO<sub>2</sub> diffusion into the chloroplasts (Yamori et al., <xref ref-type="bibr" rid="B56">2010</xref>, <xref ref-type="bibr" rid="B57">2011</xref>). Herbaceous plants, e.g., tobacco (<italic>Nicotiana tabacum</italic>), spinach (<italic>Spinacia oleracea</italic>), rice (<italic>Oryza sativa</italic>), and <italic>Triticum aestivum</italic> have commonly been used for studying the mechanism of photosynthetic acclimation and the rate-limiting step for CO<sub>2</sub> assimilation. In herbaceous C<sub>3</sub> plants, the rate-limiting step of photosynthesis depends on leaf N content and is mainly determined by N portioning between Rubisco and photosynthetic electron transport (Yamori et al., <xref ref-type="bibr" rid="B57">2011</xref>). However, little is known about the coordination of photosynthetic electron flow and gas exchange in sclerophyllous plants that have high rates of photosynthesis. What is more, it is still not well understood whether the mechanisms responsible for high rates of photosynthesis vary among sclerophyllous and herbaceous C<sub>3</sub> plants.</p>
<p>Leaf anatomy plays an important role in determining photosynthetic capacity. The area of chloroplasts facing the intercellular space largely determines the light-saturated rate of photosynthesis (Oguchi et al., <xref ref-type="bibr" rid="B35">2003</xref>, <xref ref-type="bibr" rid="B36">2005</xref>). High-photosynthesis herbaceous plants usually have thinner cell walls, leading to high values of <italic>g</italic><sub>m</sub>. By comparison, leaves of sclerophyllous plants have thicker cell walls, with a high leaf dry mass per area (LMA) (Hassiotou et al., <xref ref-type="bibr" rid="B22">2009</xref>). As an important morphological trait, LMA is inversely related to <italic>g</italic><sub>m</sub> in sclerophyllous plants (Hassiotou et al., <xref ref-type="bibr" rid="B22">2009</xref>). Therefore, sclerophyllous plants usually have low <italic>g</italic><sub>m</sub> and slow rates of photosynthesis (Loreto et al., <xref ref-type="bibr" rid="B31">1992</xref>). For example, a sclerophyllous species <italic>Quercus guyavifolia</italic> has a low rate of the maximum photosynthesis being 13 &#x003BC;mol CO<sub>2</sub> m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> (Huang et al., <xref ref-type="bibr" rid="B26">2016</xref>). As we known, the sclerophyllous species <italic>Eucalyptus camaldulensis</italic> has been introduced for production of paper in China due to its high rate of photosynthesis. The high value of LMA for leaves of <italic>E. camaldulensis</italic> is assumed to result in low <italic>g</italic><sub>m</sub>. Mesophyll conductance plays an important role in determining the rate of photosynthesis in C<sub>3</sub> plants (Flexas et al., <xref ref-type="bibr" rid="B16">2008</xref>; Carriqui et al., <xref ref-type="bibr" rid="B6">2015</xref>). A low <italic>g</italic><sub>m</sub> value increases the resistance of CO<sub>2</sub> conductance to the chloroplasts, leading to a decline in the chloroplast CO<sub>2</sub> concentration (<italic>C</italic><sub>c</sub>) and, thus, restricted CO<sub>2</sub> assimilation (Loreto et al., <xref ref-type="bibr" rid="B31">1992</xref>; Hanba et al., <xref ref-type="bibr" rid="B20">2002</xref>; Flexas et al., <xref ref-type="bibr" rid="B13">2012</xref>; Gago et al., <xref ref-type="bibr" rid="B17">2013</xref>; Carriqui et al., <xref ref-type="bibr" rid="B6">2015</xref>). Therefore, for the sclerophyllous <italic>E. camaldulensis</italic>, other mechanisms favoring CO<sub>2</sub> diffusion must be used to increase <italic>C</italic><sub>c</sub> because it is essential for the maintenance of high CO<sub>2</sub> assimilation.</p>
<p>The net rate of CO<sub>2</sub> assimilation (<italic>A</italic><sub>n</sub>) is largely dependent upon the value of <italic>C</italic><sub>c</sub> because the latter directly determines the affinity of Rubisco to CO<sub>2</sub> or O<sub>2</sub> (Farquhar et al., <xref ref-type="bibr" rid="B12">1980</xref>; von Caemmerer, <xref ref-type="bibr" rid="B51">2000</xref>). An increased <italic>C</italic><sub>c</sub> increases the rate of RuBP carboxylation and, thus, results in a rise in the photosynthetic rate. As shown by the calculation of <italic>C</italic><sub>c</sub> &#x0003D; <italic>C</italic><sub>i</sub> &#x02212; <italic>A</italic><sub>n</sub>/<italic>g</italic><sub>m</sub>, <italic>C</italic><sub>c</sub> is mainly determined by three factors: intercellular CO<sub>2</sub> concentration (<italic>C</italic><sub>i</sub>), <italic>A</italic><sub>n</sub>, and <italic>g</italic><sub>m</sub>. During the steady-state phase under high light, <italic>A</italic><sub>n</sub> and <italic>g</italic><sub>m</sub> reach the steady-state values, the value of <italic>C</italic><sub>i</sub> determines <italic>C</italic><sub>c</sub> principally but is mainly influenced by <italic>g</italic><sub>s</sub>. Stomata are the channels for gas exchange between leaf and atmosphere. During periods of drought or high temperatures, a decrease in <italic>g</italic><sub>s</sub> leads to an inhibition of the Calvin-Benson cycle (Flexas et al., <xref ref-type="bibr" rid="B14">2002</xref>; Flexas and Medrano, <xref ref-type="bibr" rid="B15">2002</xref>). In herbaceous plants of high values of <italic>g</italic><sub>m</sub>, high rates of photosynthesis are usually accompanied by high values of <italic>g</italic><sub>s</sub> (Yamori et al., <xref ref-type="bibr" rid="B56">2010</xref>, <xref ref-type="bibr" rid="B57">2011</xref>). However, it is unclear whether the high-photosynthesis sclerophyllous plant <italic>E. camaldulensis</italic> elevate <italic>g</italic><sub>s</sub> to remedy the deficiency of <italic>g</italic><sub>m</sub>.</p>
<p>According to the C<sub>3</sub> photosynthesis model, photosynthesis can be limited by RuBP carboxylation and/or RuBP regeneration (Farquhar et al., <xref ref-type="bibr" rid="B12">1980</xref>). When <italic>C</italic><sub>c</sub> is higher than <italic>C</italic><sub>trans</sub> (the chloroplast CO<sub>2</sub> concentration at which the transition from RuBP carboxylation limitation to RuBP regeneration limitation occurs), then CO<sub>2</sub> assimilation is limited by RuBP regeneration (Yamori et al., <xref ref-type="bibr" rid="B56">2010</xref>, <xref ref-type="bibr" rid="B57">2011</xref>). Once <italic>C</italic><sub>c</sub> is lower than <italic>C</italic><sub>trans</sub>, CO<sub>2</sub> assimilation tends to be limited by RuBP carboxylation. In herbaceous <italic>N. tabacum</italic> plants grown at high nitrogen concentration, the rate-limiting step of CO<sub>2</sub> assimilation is RuBP regeneration because <italic>C</italic><sub>c</sub> is greater than <italic>C</italic><sub>trans</sub> (Yamori et al., <xref ref-type="bibr" rid="B56">2010</xref>, <xref ref-type="bibr" rid="B57">2011</xref>). In the sclerophyllous <italic>E. camaldulensis</italic>, the high rate of photosynthesis and low <italic>g</italic><sub>m</sub> can cause <italic>C</italic><sub>c</sub> to be less than <italic>C</italic><sub>trans</sub>. Consequently, the rate of CO<sub>2</sub> assimilation is probably limited by RuBP carboxylation in <italic>E. camaldulensis</italic>. If this occurs, then the reduced <italic>C</italic><sub>c</sub> drives increased photorespiration (or RuBP oxygenation). The photorespiratory pathway is essential for photosynthesis at normal atmospheric CO<sub>2</sub> concentrations (Chastain and Ogren, <xref ref-type="bibr" rid="B7">1989</xref>; Eisenhut et al., <xref ref-type="bibr" rid="B9">2007</xref>), and impairment of that pathway decreases the rate of photosynthesis under such CO<sub>2</sub> conditions (Somerville and Ogren, <xref ref-type="bibr" rid="B40">1980</xref>, <xref ref-type="bibr" rid="B41">1981</xref>, <xref ref-type="bibr" rid="B42">1983</xref>; Takahashi et al., <xref ref-type="bibr" rid="B44">2007</xref>).</p>
<p>Enhancement of the photorespiratory pathway leads to a considerably improved net photosynthetic rate in <italic>Arabidopsis thaliana</italic> (Timm et al., <xref ref-type="bibr" rid="B49">2012</xref>, <xref ref-type="bibr" rid="B50">2015</xref>). Therefore, we might also speculate that <italic>E. camaldulensis</italic> enhances the capacity of that pathway to favor the Calvin-Benson cycle. Furthermore, if the photorespiratory pathway is up-regulated in plants of <italic>E. camaldulensis</italic>, then the stoichiometry of the ATP/NADPH energy demand by primary metabolism will increase. Therefore, such plants must utilize other flexible mechanisms to balance the ATP/NADPH ratio, e.g., cyclic electron flow (CEF) around photosystem I (PSI) or the water-water cycle (Makino et al., <xref ref-type="bibr" rid="B32">2002</xref>; Walker et al., <xref ref-type="bibr" rid="B53">2014</xref>). The WWC channels electrons obtained from splitting of water molecules at PSII. These electrons are transported to oxygen via the Cyt <italic>b</italic><sub>6</sub>/<italic>f</italic> complex and PSI, resulting in the formation of a proton gradient across the thylakoid membranes (Asada, <xref ref-type="bibr" rid="B1">1999</xref>, <xref ref-type="bibr" rid="B2">2000</xref>). However, little is known about how the WWC functions in the high-photosynthesis sclerophyllous plant <italic>E. camaldulensis</italic>.</p>
<p><italic>N. tabacum</italic> is regarded as a model plant to study the mechanisms of photosynthetic regulation for herbaceous plants. However, it is not known how the sclerophyllous plant <italic>E. camaldulensis</italic> obtain a high rate of photosynthesis. Here, we compared <italic>g</italic><sub>s</sub>, <italic>g</italic><sub>m</sub>, CO<sub>2</sub> assimilation, photorespiration, and alternative electron flow between <italic>N. tabacum</italic> and <italic>E. camaldulensis</italic>. Our objective was to examine the potential differences in mechanisms underlying high rates of photosynthesis between herbaceous and sclerophyllous plants.</p>
</sec>
<sec sec-type="materials and methods" id="s2">
<title>Materials and methods</title>
<sec>
<title>Plant materials and growth conditions</title>
<p>We compared the photosynthetic characteristics of <italic>N. tabacum</italic> and <italic>Eucalyptus camaldulensis</italic> Dehnh. The latter is a fast-growing species native to Australia that has been widely introduced into China for forest plantations. For this study, <italic>Eucalyptus</italic> samples were collected from plants grown in an open field at an elevation of 700 m in Dongchuan County, Kunming City, Yunnan Province, China. The monthly air temperature, total radiation and precipitation were displayed in Figure <xref ref-type="fig" rid="F1">1</xref> (data were collected from 1961 to 1980). Seedlings of <italic>N. tabacum</italic> cv. k326 were cultivated in plastic pots in a phytotron at Kunming Institute of Botany, Yunnan, China. Growing conditions were 24/18&#x000B0;C (day/night), 60% relative humidity, and an atmospheric CO<sub>2</sub> concentration maintained at 400 &#x003BC;mol mol<sup>&#x02212;1</sup>. The phytotron used sunlight as the source of illumination, and plants were exposed to approximately 95% of full sunlight (maximum at noon &#x02248; 1990 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>). Photosynthetic parameters were measured in June of 2014. Measurements were made using four mature leaves from four independent plants per species. Fully expanded mature leaves on 13-week-old plants of <italic>N. tabacum</italic> were used for photosynthetic measurements. For <italic>E. camaldulensis</italic>, mature leaves that flushed in the spring on 3-year-old plants were used for measurements.</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p><bold>Monthly climatic data collected from 1961 to 1980. (A)</bold> monthly average air temperature, monthly average maximum and minimum temperatures; <bold>(B)</bold> monthly precipitation and total irradiance.</p></caption>
<graphic xlink:href="fpls-07-01769-g0001.tif"/>
</fig>
</sec>
<sec>
<title>Measurements of gas exchange and chlorophyll fluorescence</title>
<p>Photosynthetic parameters for gas exchange and chlorophyll fluorescence were monitored with an open gas exchange system that incorporated infrared CO<sub>2</sub> and water vapor analyzers (Li-6400XT; Li-Cor Biosciences, Lincoln, NE, USA) and a 2-cm<sup>2</sup> measuring head (6400-40 Leaf Chamber Fluorometer; Li-Cor Biosciences). Data were recorded at 25&#x000B0;C and a relative air humidity of 60&#x02013;70%. The atmospheric CO<sub>2</sub> concentration was maintained at 400 &#x003BC;mol mol<sup>&#x02212;1</sup> by the Li-6400XT. Both <italic>g</italic><sub>s</sub> and the CO<sub>2</sub> assimilation rate peaked after plants were exposed to saturating light (2000 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>) for 20 min. Immediately, light response curves were evaluated at 2-min intervals at different light intensities. For <italic>N. tabacum</italic>, light response curves were measured at a photosynthetic photon flux density (PPFD) of 2000, 1600, 1200, 1000, 800, 600, 400, 300, 200, 150, 100, 50, or 0 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>. For <italic>E. camaldulensis</italic>, light response curves were measured at a photosynthetic photon flux density (PPFD) of 2000, 1600, 1200, 1000, 800, 500, 300, 150, 100, 50, or 0 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>.</p>
<p>The fluorescence parameters <italic>F<sub>m</sub>&#x02032;</italic> and <italic>F</italic><sub><italic>s</italic></sub> were evaluated as previously described (Baker and Rosenqvist, <xref ref-type="bibr" rid="B3">2004</xref>), with <italic>F<sub>m</sub>&#x02032;</italic> representing the maximum fluorescence after light-adaption and <italic>F</italic><sub><italic>s</italic></sub> being the light-adapted steady-state fluorescence. The effective quantum yield of PSII was calculated as &#x003A6;<sub><italic>PSII</italic></sub> &#x0003D; (<italic>F<sub>m</sub>&#x02032;</italic> &#x02212; <italic>F</italic><sub><italic>s</italic></sub>)/<italic>F<sub>m</sub>&#x02032;</italic> (Genty et al., <xref ref-type="bibr" rid="B18">1989</xref>). The maximum fluorescence after dark adaptation (<italic>F</italic><sub><italic>m</italic></sub>) was examined after 30 min of dark adaptation following measurement of the light response curve. Non-photochemical quenching was calculated as NPQ &#x0003D; (<italic>F</italic><sub><italic>m</italic></sub> &#x02212; <italic>F<sub>m</sub>&#x02032;</italic>)/<italic>F<sub>m</sub>&#x02032;</italic>.</p>
</sec>
<sec>
<title>Estimation of photosynthetic electron flow</title>
<p>Using the data of chlorophyll fluorescence parameters, total photosynthetic electron flow through PSII is calculated as follows (Krall and Edwards, <xref ref-type="bibr" rid="B28">1992</xref>):
<disp-formula id="E1"><mml:math id="M7"><mml:mtable columnalign="left"><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mi>J</mml:mi></mml:mrow><mml:mrow><mml:mi>T</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mrow><mml:mi>&#x003A6;</mml:mi></mml:mrow><mml:mrow><mml:mi>P</mml:mi><mml:mi>S</mml:mi><mml:mi>I</mml:mi><mml:mi>I</mml:mi></mml:mrow></mml:msub><mml:mo>&#x000D7;</mml:mo><mml:mi>P</mml:mi><mml:mi>P</mml:mi><mml:mi>F</mml:mi><mml:mi>D</mml:mi><mml:mo>&#x000D7;</mml:mo><mml:msub><mml:mrow><mml:mi>L</mml:mi></mml:mrow><mml:mrow><mml:mi>a</mml:mi><mml:mi>b</mml:mi><mml:mi>s</mml:mi></mml:mrow></mml:msub><mml:mo>&#x000D7;</mml:mo><mml:mn>0</mml:mn><mml:mo>.</mml:mo><mml:mn>5</mml:mn></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
where &#x003A6;<sub>PSII</sub> is the effective quantum yield of PSII and <italic>L</italic><sub><italic>abs</italic></sub> represents leaf absorbance. We applied the constant of 0.5 based on the assumption that photons were equally distributed between PSI and PSII.</p>
<p>Using the basic equation of leaf carbon dioxide gas exchange and Rubisco specificity for carboxylation relative to oxygenation (von Caemmerer and Farquhar, <xref ref-type="bibr" rid="B52">1981</xref>; Sharkey, <xref ref-type="bibr" rid="B39">1988</xref>; Walker et al., <xref ref-type="bibr" rid="B54">2016</xref>), the rate of Rubisco carboxylation (<italic>V</italic><sub>c</sub>) and that of Rubisco oxygenation (<italic>V</italic><sub>o</sub>) are calculated according to.
<disp-formula id="E2"><mml:math id="M8"><mml:mtable columnalign='left'><mml:mtr><mml:mtd><mml:msub><mml:mi>V</mml:mi><mml:mi>c</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>n</mml:mtext></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:mo>&#x000A0;</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mtext>d</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:mn>1</mml:mn><mml:mo>&#x02212;</mml:mo><mml:mo stretchy='false'>(</mml:mo><mml:msup><mml:mo>&#x00393;</mml:mo><mml:mo>&#x0002A;</mml:mo></mml:msup><mml:mo>/</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mtext>c</mml:mtext></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mfrac></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:msub><mml:mi>V</mml:mi><mml:mi>o</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>n</mml:mtext></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:mo>&#x000A0;</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mtext>d</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mtext>c</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:mn>2</mml:mn><mml:msup><mml:mo>&#x00393;</mml:mo><mml:mo>&#x0002A;</mml:mo></mml:msup><mml:mo stretchy='false'>)</mml:mo><mml:mo>&#x02212;</mml:mo><mml:mn>0.5</mml:mn></mml:mrow></mml:mfrac></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
where <italic>A</italic><sub>n</sub> represented the net rate of CO<sub>2</sub> assimilation, <italic>R</italic><sub><italic>d</italic></sub> was the rate of mitochondrial respiration as measured after 30 min of dark adaptation, &#x00393;<sup>&#x0002A;</sup> was the CO<sub>2</sub> compensation point in the absence of daytime respiration (Farquhar et al., <xref ref-type="bibr" rid="B12">1980</xref>; Brooks and Farquhar, <xref ref-type="bibr" rid="B4">1985</xref>), and <italic>C</italic><sub>c</sub> was the chloroplast CO<sub>2</sub> concentration. The electron flow for photorespiratory carbon oxidation can be expressed as:
<disp-formula id="E3"><mml:math id="M9"><mml:mtable columnalign="left"><mml:mtr><mml:mtd><mml:mi>J</mml:mi><mml:mtext class="textrm" mathvariant="normal">e</mml:mtext><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext class="textrm" mathvariant="normal">PCO</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:mo>=</mml:mo><mml:mn>4</mml:mn><mml:mo>&#x000D7;</mml:mo><mml:msub><mml:mrow><mml:mi>V</mml:mi></mml:mrow><mml:mrow><mml:mi>o</mml:mi></mml:mrow></mml:msub></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
The NADPH demands from CO<sub>2</sub> assimilation and photorespiration were calculated according to the models of Farquhar et al. (<xref ref-type="bibr" rid="B12">1980</xref>). Using the data from gas exchange measurements, we determined the rate of electron transport for NADPH required by carboxylation and oxygenation of RuBP (<italic>J</italic><sub>g</sub>) as follows (Zivcak et al., <xref ref-type="bibr" rid="B59">2013</xref>; Walker et al., <xref ref-type="bibr" rid="B53">2014</xref>)
<disp-formula id="E4"><mml:math id="M10"><mml:mtable columnalign="left"><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mi>J</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>4</mml:mn><mml:mo>&#x000D7;</mml:mo><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>A</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">n</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:msub><mml:mrow><mml:mi>R</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">d</mml:mtext></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:mo>&#x000D7;</mml:mo><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">i</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:msup><mml:mrow><mml:mn>2</mml:mn><mml:mo>&#x00393;</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x0002A;</mml:mo></mml:mrow></mml:msup></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:mo>/</mml:mo><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">i</mml:mtext></mml:mrow></mml:msub><mml:msup><mml:mrow><mml:mo>-</mml:mo><mml:mo>&#x00393;</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x0002A;</mml:mo></mml:mrow></mml:msup></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
where <italic>C</italic><sub>i</sub> was the intercellular CO<sub>2</sub> concentration. The alternative electron flow was calculated as follows (Makino et al., <xref ref-type="bibr" rid="B32">2002</xref>; Zivcak et al., <xref ref-type="bibr" rid="B59">2013</xref>; Huang et al., <xref ref-type="bibr" rid="B26">2016</xref>):
<disp-formula id="E5"><mml:math id="M11"><mml:mtable columnalign="left"><mml:mtr><mml:mtd><mml:mtext>&#x000A0;</mml:mtext><mml:msub><mml:mrow><mml:mi>J</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">a</mml:mtext></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mrow><mml:mi>J</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">T</mml:mtext></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mrow><mml:mi>J</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow></mml:msub></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
</p>
</sec>
<sec>
<title>Estimations of mesophyll conductance and chloroplast CO<sub>2</sub> concentration</title>
<p>Values for mesophyll conductance (<italic>g</italic><sub>m</sub>) were estimated through a combination analysis of gas exchange and chlorophyll fluorescence, and according to the following equation (Harley et al., <xref ref-type="bibr" rid="B21">1992</xref>; Loreto et al., <xref ref-type="bibr" rid="B31">1992</xref>; Warren and Dreyer, <xref ref-type="bibr" rid="B55">2006</xref>; Yamori et al., <xref ref-type="bibr" rid="B56">2010</xref>, <xref ref-type="bibr" rid="B57">2011</xref>):
<disp-formula id="E6"><mml:math id="M12"><mml:mtable columnalign="left"><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">m</mml:mtext></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mi>A</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">n</mml:mtext></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">i</mml:mtext></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msup><mml:mrow><mml:mo>&#x00393;</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x0002A;</mml:mo></mml:mrow></mml:msup><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>J</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">T</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:mn>8</mml:mn><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>A</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">n</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:msub><mml:mrow><mml:mi>R</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">d</mml:mtext></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>/</mml:mo><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>J</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">T</mml:mtext></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:mn>4</mml:mn><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>A</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">n</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:msub><mml:mrow><mml:mi>R</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">d</mml:mtext></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:mfrac></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
Using the estimated <italic>g</italic><sub>m</sub>, we calculated the chloroplast CO<sub>2</sub> concentration (<italic>C</italic><sub>c</sub>) according to the following equation (Long and Bernacchi, <xref ref-type="bibr" rid="B30">2003</xref>; Warren and Dreyer, <xref ref-type="bibr" rid="B55">2006</xref>; Yamori et al., <xref ref-type="bibr" rid="B56">2010</xref>, <xref ref-type="bibr" rid="B57">2011</xref>):
<disp-formula id="E7"><mml:math id="M13"><mml:mtable columnalign="left"><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">c</mml:mtext></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">i</mml:mtext></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mi>A</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">n</mml:mtext></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">m</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
The response of net CO<sub>2</sub> assimilation rate to CO<sub>2</sub> concentration was examined at 2000 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> and 25&#x000B0;C. Before <italic>A</italic>/<italic>C</italic><sub>i</sub> measurement, leaves were light adapted at 2000 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> and 400 &#x003BC;mol mol<sup>&#x02212;1</sup> CO<sub>2</sub> concentration for at least 20 min to obtain the maximum values of <italic>g</italic><sub>s</sub> and <italic>A</italic><sub>n</sub>. Afterwards, the CO<sub>2</sub> concentrations were set to 50 &#x003BC;mol mol<sup>&#x02212;1</sup> and increased stepwise. For <italic>E. camaldulensis</italic>, CO<sub>2</sub> concentrations were set to 0, 50, 100, 150, 200, 300, 400, 600, 800, 1000, and 1200 &#x003BC;mol mol<sup>&#x02212;1</sup>. The CO<sub>2</sub> concentrations in <italic>A</italic>/<italic>C</italic><sub>i</sub> measurement in <italic>N. tabacum</italic> were set to 0, 50, 100, 150, 200, 300, 400, 600, 800, 1000, 1200, 1600, 2000 &#x003BC;mol mol<sup>&#x02212;1</sup>. Each stepwise measurement was completed within 2&#x02013;3 min. Using <italic>A</italic>/<italic>C</italic><sub>i</sub> curves, we calculated the maximum rates of RuBP regeneration (<italic>J</italic><sub>max</sub>) and RuBP carboxylation (<italic>V</italic><sub>cmax</sub>) according to the method of Long and Bernacchi (<xref ref-type="bibr" rid="B30">2003</xref>). To identify the limiting step of CO<sub>2</sub> assimilation, we determined the chloroplast CO<sub>2</sub> concentration at which the transition from RuBP carboxylation to RuBP regeneration occurred (<italic>C</italic><sub>trans</sub>) as follows (Yamori et al., <xref ref-type="bibr" rid="B56">2010</xref>, <xref ref-type="bibr" rid="B57">2011</xref>):
<disp-formula id="E8"><mml:math id="M14"><mml:mtable columnalign="left"><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">trans</mml:mtext></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mi>K</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">c</mml:mtext></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mn>1</mml:mn><mml:mo>&#x0002B;</mml:mo><mml:mi>O</mml:mi><mml:mo>/</mml:mo><mml:msub><mml:mrow><mml:mi>K</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">o</mml:mtext></mml:mrow></mml:msub></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:msub><mml:mrow><mml:mi>J</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">max</mml:mtext></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:mn>4</mml:mn><mml:msub><mml:mrow><mml:mi>V</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">cmax</mml:mtext></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msup><mml:mrow><mml:mn>2</mml:mn><mml:mo>&#x00393;</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x0002A;</mml:mo></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:mn>1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mrow><mml:mi>J</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">max</mml:mtext></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:mn>4</mml:mn><mml:msub><mml:mrow><mml:mi>V</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">cmax</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
where <italic>K</italic><sub>c</sub> (&#x003BC;mol mol<sup>&#x02212;1</sup>) and <italic>K</italic><sub>o</sub> (mmol mol<sup>&#x02212;1</sup>) were the Michaelis constants for CO<sub>2</sub> and O<sub>2</sub>, respectively (Farquhar et al., <xref ref-type="bibr" rid="B12">1980</xref>), and were assumed to be 406.8 &#x003BC;mol mol<sup>&#x02212;1</sup> and 277 mmol mol<sup>&#x02212;1</sup>, respectively, at 25&#x000B0;C (Long and Bernacchi, <xref ref-type="bibr" rid="B30">2003</xref>); <italic>O</italic> was the partial pressure of O<sub>2</sub> and was assumed to be 210 (Farquhar et al., <xref ref-type="bibr" rid="B12">1980</xref>); <italic>J</italic><sub>max</sub> was the maximum rate of RuBP regeneration; and <italic>V</italic><sub>cmax</sub> was the maximum rate of RuBP carboxylation. The rate-limiting step for CO<sub>2</sub> assimilation was then determined by comparing the values of <italic>C</italic><sub>c</sub> and <italic>C</italic><sub>trans</sub>.</p>
</sec>
<sec>
<title>Modeling ATP supplied via flexible mechanisms</title>
<p>The total amount of ATP demand from Rubisco carboxylation and oxygenation was obtained with the following formula (Walker et al., <xref ref-type="bibr" rid="B53">2014</xref>):
<disp-formula id="E9"><mml:math id="M15"><mml:mtable columnalign="left"><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">ATP</mml:mtext></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>A</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">n</mml:mtext></mml:mrow></mml:msub><mml:mtext>&#x000A0;</mml:mtext><mml:mo>&#x0002B;</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:msub><mml:mrow><mml:mi>R</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">d</mml:mtext></mml:mrow></mml:msub></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mtext>&#x000A0;</mml:mtext><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mn>3</mml:mn><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">i</mml:mtext></mml:mrow></mml:msub><mml:mtext>&#x000A0;</mml:mtext><mml:mo>&#x0002B;</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>3</mml:mn><mml:mo>.</mml:mo><mml:mn>5</mml:mn><mml:mfrac><mml:mrow><mml:msup><mml:mrow><mml:mo>&#x00393;</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x0002A;</mml:mo></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:mi>&#x003B1;</mml:mi></mml:mrow></mml:mfrac></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow><mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">i</mml:mtext></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msup><mml:mrow><mml:mo>&#x00393;</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x0002A;</mml:mo></mml:mrow></mml:msup></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:mfrac></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
Assuming that the stoichiometry of ATP/NADPH produced by LEF (electron transport from PSII to NADP<sup>&#x0002B;</sup>) is 1.29 (Sacksteder et al., <xref ref-type="bibr" rid="B37">2000</xref>; Seelert et al., <xref ref-type="bibr" rid="B38">2000</xref>; Walker et al., <xref ref-type="bibr" rid="B53">2014</xref>), the amount of ATP produced by LEF was calculated as:
<disp-formula id="E10"><mml:math id="M16"><mml:mtable columnalign="left"><mml:mtr><mml:mtd><mml:mtext>&#x000A0;</mml:mtext><mml:msub><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">ATP</mml:mtext><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mtext class="textrm" mathvariant="normal">LEF</mml:mtext></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mn>2</mml:mn><mml:mo>&#x000D7;</mml:mo><mml:msub><mml:mrow><mml:mi>J</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x000D7;</mml:mo><mml:mn>1</mml:mn><mml:mo>.</mml:mo><mml:mn>29</mml:mn></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
Rates of ATP supply from other flexible mechanisms were determined by subtracting the amount of ATP produced by LEF from <italic>v</italic><sub><italic>ATP</italic></sub> according to:
<disp-formula id="E11"><mml:math id="M17"><mml:mtable columnalign="left"><mml:mtr><mml:mtd><mml:mtext>&#x000A0;</mml:mtext><mml:msub><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">ATP</mml:mtext><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mtext class="textrm" mathvariant="normal">Flex</mml:mtext></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">ATP</mml:mtext></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">ATP</mml:mtext><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mtext class="textrm" mathvariant="normal">LEF</mml:mtext></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:msub></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
</p>
</sec>
<sec>
<title>Quantitative limitation analysis of <italic>A</italic><sub>n</sub></title>
<p>Photosynthetic limitations in <italic>E. camaldulensis</italic> and <italic>N. tabacum</italic> were assessed according to the method of Grassi and Magnani (<xref ref-type="bibr" rid="B19">2005</xref>) and Carriqui et al. (<xref ref-type="bibr" rid="B6">2015</xref>). The values for stomatal (<italic>l</italic><sub><italic>s</italic></sub>), mesophyll conductance (<italic>l</italic><sub>mc</sub>), and biochemical (<italic>l</italic><sub>b</sub>) limitations represented measures of the relative importance of stomatal diffusion, mesophyll diffusion, and photosynthetic biochemistry in setting the observed value of <italic>A</italic><sub>n</sub>. Relative photosynthetic limitations were calculated as follows (Grassi and Magnani, <xref ref-type="bibr" rid="B19">2005</xref>; Carriqui et al., <xref ref-type="bibr" rid="B6">2015</xref>):
<disp-formula id="E12"><mml:math id="M18"><mml:mtable columnalign="left"><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mi>l</mml:mi></mml:mrow><mml:mrow><mml:mi>s</mml:mi></mml:mrow></mml:msub></mml:mtd><mml:mtd><mml:mo>=</mml:mo></mml:mtd><mml:mtd><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">tot</mml:mtext></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">s</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x000D7;</mml:mo><mml:mi>&#x02202;</mml:mi><mml:msub><mml:mrow><mml:mi>A</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">n</mml:mtext></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:mi>&#x02202;</mml:mi><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">c</mml:mtext></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">tot</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:mi>&#x02202;</mml:mi><mml:msub><mml:mrow><mml:mi>A</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">n</mml:mtext></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:mi>&#x02202;</mml:mi><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">c</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mi>l</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi><mml:mi>c</mml:mi></mml:mrow></mml:msub></mml:mtd><mml:mtd><mml:mo>=</mml:mo></mml:mtd><mml:mtd><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">tot</mml:mtext></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">m</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x000D7;</mml:mo><mml:mi>&#x02202;</mml:mi><mml:msub><mml:mrow><mml:mi>A</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">n</mml:mtext></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:mi>&#x02202;</mml:mi><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">c</mml:mtext></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">tot</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:mi>&#x02202;</mml:mi><mml:msub><mml:mrow><mml:mi>A</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">n</mml:mtext></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:mi>&#x02202;</mml:mi><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">c</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mi>l</mml:mi></mml:mrow><mml:mrow><mml:mi>b</mml:mi></mml:mrow></mml:msub></mml:mtd><mml:mtd><mml:mo>=</mml:mo></mml:mtd><mml:mtd><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">tot</mml:mtext></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mrow><mml:mtext class="textrm" mathvariant="normal">g</mml:mtext></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">tot</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:mi>&#x02202;</mml:mi><mml:msub><mml:mrow><mml:mi>A</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">n</mml:mtext></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:mi>&#x02202;</mml:mi><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mtext class="textrm" mathvariant="normal">c</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
where <italic>g</italic><sub>tot</sub> was total conductance to CO<sub>2</sub> between the leaf surface and carboxylation sites (calculated as 1/<italic>g</italic><sub>tot</sub> &#x0003D; 1/ <italic>g</italic><sub>s</sub> &#x0002B; 1/ <italic>g</italic><sub>m</sub>).</p>
</sec>
<sec>
<title>Statistical analysis</title>
<p>All results were displayed as mean values of four independent measurements. We used one-way ANOVA and SPSS 16.0 software (SPSS Inc., Chicago, IL, USA) to examine differences between the two species. Those differences were considered significant at <italic>P</italic> &#x0003C; 0.05.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec>
<title><italic>A</italic>/<italic>C</italic><sub>i</sub> curves and the rate-limiting step of CO<sub>2</sub> assimilation</title>
<p>The <italic>A</italic>/<italic>C</italic><sub>i</sub> curves indicated that the maximum rate of photosynthesis was higher in <italic>N. tabacum</italic> than in <italic>E. camaldulensis</italic> (Figure <xref ref-type="fig" rid="F2">2A</xref>). Values for the maximum rate of RuBP regeneration (<italic>J</italic><sub>max</sub>) and RuBP carboxylation (<italic>V</italic><sub>cmax</sub>) were significantly higher in <italic>N. tabacum</italic> (Figure <xref ref-type="fig" rid="F2">2B</xref>). Both species showed similar ratios of <italic>J</italic><sub>max</sub>/<italic>V</italic><sub>cmax</sub> (Figure <xref ref-type="fig" rid="F1">1B</xref>) as well as the same value for <italic>A</italic><sub>400</sub> at 400 &#x003BC;mol mol<sup>&#x02212;1</sup> CO<sub>2</sub>. Because the CO<sub>2</sub> compensation point in the absence of daytime respiration (&#x00393;<sup>&#x0002A;</sup>) has an important impact on <italic>g</italic><sub>m</sub>, <italic>C</italic><sub>c</sub>, <italic>C</italic><sub>trans</sub>, and limitations on the stomata (<italic>l</italic><sub><italic>s</italic></sub>), mesophyll conductance (<italic>l</italic><sub>mc</sub>), and biochemical functions (<italic>l</italic><sub>b</sub>), we conducted a sensitivity analysis and examined the rate-limiting step for CO<sub>2</sub> assimilation to &#x00393;<sup>&#x0002A;</sup> (range from 30 to 40 &#x003BC;mol mol<sup>&#x02212;1</sup>). For <italic>E. camaldulensis, l</italic><sub>mc</sub> was the most important constraining factor for photosynthesis, followed by <italic>l</italic><sub><italic>s</italic></sub> and <italic>l</italic><sub>b</sub> (Figure <xref ref-type="fig" rid="F2">2C</xref>). By contrast, biochemical limitations were the most significant in <italic>N. tabacum</italic>, followed by <italic>l</italic><sub>mc</sub> and <italic>l</italic><sub><italic>s</italic></sub> (Figure <xref ref-type="fig" rid="F2">2C</xref>). Furthermore, irrespective of &#x00393;<sup>&#x0002A;</sup>, the value of <italic>C</italic><sub>c</sub> at 400 &#x003BC;mol mol<sup>&#x02212;1</sup> CO<sub>2</sub> was significantly lower than <italic>C</italic><sub>trans</sub> in <italic>E. camaldulensis</italic> (Table <xref ref-type="table" rid="T1">1</xref>), suggesting that the rate-limiting step of <italic>A</italic><sub>400</sub> tended to be RuBP carboxylation. By comparison, in <italic>N. tabacum</italic> the value of <italic>C</italic><sub>c</sub> at 400 &#x003BC;mol mol<sup>&#x02212;1</sup> CO<sub>2</sub> was significantly higher than <italic>C</italic><sub>trans</sub> (Table <xref ref-type="table" rid="T1">1</xref>), indicating <italic>A</italic><sub>400</sub> tended to be limited by RuBP regeneration.</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p><bold>Analysis of <italic><bold>A</bold></italic>/<italic><bold>C</bold></italic><sub><bold>i</bold></sub> curves and quantitative limitation analysis of <italic><bold>A</bold></italic><sub><bold>n</bold></sub> in <italic><bold>Eucalyptus camaldulensis</bold></italic> and <italic><bold>N. tabacum</bold></italic>. (A)</bold> Intercellular CO<sub>2</sub> concentration (<italic>C</italic><sub>i</sub>) response of CO<sub>2</sub> assimilation rate (<italic>A</italic><sub>n</sub>) in <italic>Eucalyptus camaldulensis</italic> and <italic>N. tabacum</italic> measured at 25&#x000B0;C and 1500 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>. <bold>(B)</bold> Values for <italic>J</italic><sub>max</sub>, <italic>V</italic><sub>cmax</sub> and <italic>J</italic><sub>max</sub>/<italic>V</italic><sub>cmax</sub> ratio. <italic>J</italic><sub>max</sub> represents the maximum rate of RuBP regeneration; <italic>V</italic><sub>cmax</sub> indicates the maximum rate of RuBP carboxylation. <bold>(C)</bold> Sensitivity analyses of relative stomatal (<italic>l</italic><sub><italic>s</italic></sub>), mesophyll conductance (<italic>l</italic><sub>mc</sub>) and biochemical (<italic>l</italic><sub>b</sub>) limitations for photosynthesis to CO<sub>2</sub> compensation point under the absence of respiration condition (&#x00393;<sup>&#x0002A;</sup>) at 25&#x000B0;C and 400 &#x003BC;mol mol<sup>&#x02212;1</sup> CO<sub>2</sub>. Values are means &#x000B1; SE (<italic>n</italic> &#x0003D; 4).</p></caption>
<graphic xlink:href="fpls-07-01769-g0002.tif"/>
</fig>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p><bold>Sensitivity analyses of rate-limiting step for CO<sub><bold>2</bold></sub> assimilation to &#x00393;<sup><bold>&#x0002A;</bold></sup></bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Species</bold></th>
<th valign="top" align="center"><bold>&#x00393;<sup>&#x0002A;</sup></bold></th>
<th valign="top" align="center"><bold><italic>g</italic><sub>m</sub></bold></th>
<th valign="top" align="center"><bold><italic>C</italic><sub>c</sub></bold></th>
<th valign="top" align="center"><bold><italic>C</italic><sub>trans</sub></bold></th>
<th valign="top" align="center"><bold>Significance between <italic>C</italic><sub>c</sub> and <italic>C</italic><sub>trans</sub></bold></th>
<th valign="top" align="center"><bold><italic>A</italic><sub><italic>r</italic></sub></bold></th>
<th valign="top" align="center"><bold><italic>A</italic><sub>c</sub></bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>E.camaldulensis</italic></td>
<td valign="top" align="center">30</td>
<td valign="top" align="center">0.107</td>
<td valign="top" align="center">86.2</td>
<td valign="top" align="center">160.2</td>
<td valign="top" align="center">0.0001</td>
<td valign="top" align="center">&#x02212;</td>
<td valign="top" align="center">&#x0002B;</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">35</td>
<td valign="top" align="center">0.115</td>
<td valign="top" align="center">102.2</td>
<td valign="top" align="center">146.9</td>
<td valign="top" align="center">0.0001</td>
<td valign="top" align="center">&#x02212;</td>
<td valign="top" align="center">&#x0002B;</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">38</td>
<td valign="top" align="center">0.121</td>
<td valign="top" align="center">111.1</td>
<td valign="top" align="center">138.8</td>
<td valign="top" align="center">0.0001</td>
<td valign="top" align="center">&#x02212;</td>
<td valign="top" align="center">&#x0002B;</td>
</tr>
<tr style="border-bottom: thin solid #000000;">
<td/>
<td valign="top" align="center">40</td>
<td valign="top" align="center">0.124</td>
<td valign="top" align="center">116.0</td>
<td valign="top" align="center">133.5</td>
<td valign="top" align="center">0.045</td>
<td valign="top" align="center">&#x02212;</td>
<td valign="top" align="center">&#x0002B;</td>
</tr> <tr>
<td valign="top" align="left"><italic>N. tabacum</italic></td>
<td valign="top" align="center">30</td>
<td valign="top" align="center">0.194</td>
<td valign="top" align="center">185.1</td>
<td valign="top" align="center">156.6</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">&#x0002B;</td>
<td valign="top" align="center">&#x02212;</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">35</td>
<td valign="top" align="center">0.263</td>
<td valign="top" align="center">215.9</td>
<td valign="top" align="center">143.3</td>
<td valign="top" align="center">0.0001</td>
<td valign="top" align="center">&#x0002B;</td>
<td valign="top" align="center">&#x02212;</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">38</td>
<td valign="top" align="center">0.338</td>
<td valign="top" align="center">234.4</td>
<td valign="top" align="center">135.3</td>
<td valign="top" align="center">0.0001</td>
<td valign="top" align="center">&#x0002B;</td>
<td valign="top" align="center">&#x02212;</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">40</td>
<td valign="top" align="center">0.424</td>
<td valign="top" align="center">246.8</td>
<td valign="top" align="center">130.0</td>
<td valign="top" align="center">0.0001</td>
<td valign="top" align="center">&#x0002B;</td>
<td valign="top" align="center">&#x02212;</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><italic>Sensitivity analyses of photosynthetic parameters calculated from A/C<sub>i</sub> curves to CO<sub>2</sub> compensation point in the absence of respiration condition (&#x00393;<sup>&#x0002A;</sup>) in Eucalyptus camaldulensis and N. tabacum. g<sub>m</sub>, mesophyll conductance; C<sub>c</sub>, chloroplast CO<sub>2</sub> concentration; C<sub>trans</sub>, chloroplast CO<sub>2</sub> concentration at which the transition from RuBP carboxylation to RuBP regeneration occurs; A<sub>r</sub>, RuBP regeneration; A<sub>c</sub>, RuBP carboxylation. C<sub>c</sub> for A<sub>400</sub> less than C<sub>trans</sub> indicates that CO<sub>2</sub> assimilation is limited by A<sub>c</sub>, whereas C<sub>c</sub> for A<sub>400</sub> higher than C<sub>trans</sub> indicates that CO<sub>2</sub> assimilation is limited by A<sub>r</sub>. &#x0201C;&#x02212;&#x0201D; represents no and &#x0201C;&#x0002B;&#x0201D; represents yes. Values are means &#x000B1; SE (n &#x0003D; 4)</italic>.</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec>
<title>Light response changes in CO<sub>2</sub> assimilation and photosynthetic electron flow</title>
<p>The light response curves demonstrated that the response of <italic>A</italic><sub>n</sub> to incident light was similar between <italic>E. camaldulensis</italic> and <italic>N. tabacum</italic> (Figure <xref ref-type="fig" rid="F3">3A</xref>). However, the maximum value of <italic>g</italic><sub>s</sub> was much higher in <italic>E. camaldulensis</italic> (Figure <xref ref-type="fig" rid="F3">3B</xref>), while <italic>C</italic><sub>i</sub> was slightly higher in that species (Figure <xref ref-type="fig" rid="F3">3C</xref>). When &#x00393;<sup>&#x0002A;</sup> was assumed to be 40 &#x003BC;mol mol<sup>&#x02212;1</sup>, then <italic>C</italic><sub>c</sub> under saturating light was much lower in <italic>E. camaldulensis</italic> (Figure <xref ref-type="fig" rid="F3">3D</xref>). At 2000 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> in light response curves, the value of <italic>C</italic><sub>c</sub> was 124 &#x003BC;mol mol<sup>&#x02212;1</sup> in <italic>E. camaldulensis</italic> and 226 &#x003BC;mol mol<sup>&#x02212;1</sup> in <italic>N. tabacum</italic> (Figure <xref ref-type="fig" rid="F3">3D</xref>). This large difference of <italic>C</italic><sub>c</sub> between <italic>E. camaldulensis</italic> and <italic>N. tabacum</italic> was principally caused by the contrast in <italic>g</italic><sub>m</sub>.</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p><bold>Light response changes in (A)</bold> photosynthetic rate (<italic>A</italic><sub>n</sub>), <bold>(B)</bold> stomatal conductance (<italic>g</italic><sub>s</sub>), <bold>(C)</bold> intercellular CO<sub>2</sub> concentration (<italic>C</italic><sub>i</sub>), and <bold>(D)</bold> chloroplast CO<sub>2</sub> concentration (<italic>C</italic><sub>c</sub>) for leaves of <italic>Eucalyptus camaldulensis</italic> and <italic>N. tabacum</italic>. Measurements were conducted at 25&#x000B0;C and 400 &#x003BC;mol mol<sup>&#x02212;1</sup> CO<sub>2</sub>. The value of <italic>C</italic><sub>c</sub> was based on the calculation of <italic>g</italic><sub>m</sub> on assumptions of &#x00393;<sup>&#x0002A;</sup> being 40 &#x003BC;mol mol<sup>&#x02212;1</sup> and <italic>L</italic><sub><italic>abs</italic></sub> being 0.85. Values are means &#x000B1; SE (<italic>n</italic> &#x0003D; 4).</p></caption>
<graphic xlink:href="fpls-07-01769-g0003.tif"/>
</fig>
<p>Under all light intensities, <italic>E. camaldulensis</italic> had significantly higher effective quantum yield of PSII (&#x003A6;<sub><italic>PSII</italic></sub>) compared to <italic>N. tabacum</italic>, especially under high light (Figure <xref ref-type="fig" rid="F4">4A</xref>). Concomitantly, NPQ values were lower in <italic>E. camaldulensis</italic> than <italic>N. tabacum</italic> (Figure <xref ref-type="fig" rid="F4">4B</xref>). According to the data of &#x003A6;<sub>PSII</sub>, <italic>E. camaldulensis</italic> had significantly higher values of total electron flow through PSII (<italic>J</italic><sub>T</sub>) than <italic>N. tabacum</italic> (Figure <xref ref-type="fig" rid="F5">5A</xref>). Meanwhile, the ratios of the rate of Rubisco carboxylation (<italic>V</italic><sub>c</sub>) to that of Rubisco oxygenation (<italic>V</italic><sub>o</sub>) under saturating light intensities were much higher in <italic>E. camaldulensis</italic> (Figure <xref ref-type="fig" rid="F5">5B</xref>). On assumptions of &#x00393;<sup>&#x0002A;</sup> being 40 &#x003BC;mol mol<sup>&#x02212;1</sup> and leaf absorbance being 0.85 in <italic>E. camaldulensis</italic> and <italic>N. tabacum</italic>, at 2000 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>, comparative values for <italic>J</italic><sub>T</sub> and the <italic>V</italic><sub>o</sub>/<italic>V</italic><sub>c</sub> ratio in <italic>E. camaldulensis</italic> vs. <italic>N. tabacum</italic> were 280 vs. 178 and 0.63 vs. 0.38, respectively (Figures <xref ref-type="fig" rid="F5">5A,B</xref>). Furthermore, under light intensities above 300 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>, electron flux for photorespiratory carbon oxidation [<italic>J</italic>e(PCO)] were significantly higher in <italic>E. camaldulensis</italic> (Figure <xref ref-type="fig" rid="F5">5C</xref>). Values for <italic>J</italic>e(PCO) at 2000 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> were 100 and 48 &#x003BC;mol electrons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> in <italic>E. camaldulensis</italic> and <italic>N. tabacum</italic>, respectively. Plotting the <italic>V</italic><sub>o</sub>/<italic>V</italic><sub>c</sub> ratio and <italic>C</italic><sub>c</sub> indicated that the difference in the <italic>V</italic><sub>o</sub>/<italic>V</italic><sub>c</sub> ratio between <italic>E. camaldulensis</italic> and <italic>N. tabacum</italic> was mainly determined by the difference in <italic>C</italic><sub>c</sub> (Figure <xref ref-type="fig" rid="F6">6</xref>), which in turn caused by the change in <italic>g</italic><sub>m</sub>.</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p><bold>Light response changes in (A)</bold> effective quantum yield of PSII [Y(II)], and <bold>(B)</bold> non-photochemical quenching (NPQ) for leaves of <italic>Eucalyptus camaldulensis</italic> and <italic>N. tabacum</italic>. Measurements were conducted at 25&#x000B0;C and 400 &#x003BC;mol mol<sup>&#x02212;1</sup> CO<sub>2</sub>. Values are means &#x000B1; SE (<italic>n</italic> &#x0003D; 4).</p></caption>
<graphic xlink:href="fpls-07-01769-g0004.tif"/>
</fig>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p><bold>Light response changes in (A)</bold> photosynthetic electron flow through PSII (<italic>J</italic><sub>T</sub>), and <bold>(B)</bold> the ratio of the rate of Rubisco carboxylation (<italic>V</italic><sub>c</sub>) to that of Rubisco oxygenation (<italic>V</italic><sub>o</sub>), and <bold>(C)</bold> electron flux for photorespiratory carbon oxidation [<italic>J</italic>e(PCO)] for leaves of <italic>Eucalyptus camaldulensis</italic> and <italic>N. tabacum</italic>. Measurements were conducted at 25&#x000B0;C and 400 &#x003BC;mol mol<sup>&#x02212;1</sup> CO<sub>2</sub>. Values are means &#x000B1; SE (<italic>n</italic> &#x0003D; 4).</p></caption>
<graphic xlink:href="fpls-07-01769-g0005.tif"/>
</fig>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p><bold>The ratio of Rubisco oxygenation to carboxylation (<italic><bold>V</bold></italic><sub><bold>o</bold></sub>/<italic><bold>V</bold></italic><sub><bold>c</bold></sub>) as a function of <italic><bold>C</bold></italic><sub><bold>c</bold></sub> for leaves of <italic><bold>Eucalyptus camaldulensis</bold></italic> and <italic><bold>N. tabacum</bold></italic></bold>. The data of <italic>V</italic><sub>o</sub>/<italic>V</italic><sub>c</sub> and <italic>C</italic><sub>c</sub> were referred from Figures <xref ref-type="fig" rid="F2">2D</xref>, <xref ref-type="fig" rid="F4">4B</xref>, respectively. Values are means &#x000B1; SE (<italic>n</italic> &#x0003D; 4).</p></caption>
<graphic xlink:href="fpls-07-01769-g0006.tif"/>
</fig>
</sec>
<sec>
<title>Alternative electron flow and ATP synthesis from flexible mechanisms</title>
<p>Under high light, <italic>E. camaldulensis</italic> had significantly increased alternative electron flow, as indicated by the higher values of <italic>J</italic><sub>a</sub> and the <italic>J</italic><sub>a</sub>/<italic>J</italic><sub>g</sub> ratio (Figure <xref ref-type="fig" rid="F7">7</xref>). To examine the relationship between the alternative electron flow and photorespiration, we evaluated possible associations between <italic>J</italic><sub>a</sub> and <italic>J</italic>e(PCO) under light intensities higher than 300 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>. Interestingly, <italic>J</italic><sub>a</sub> was positively and linearly correlated with <italic>J</italic>e(PCO) (Figure <xref ref-type="fig" rid="F7">7A</xref>, <italic>P</italic> &#x0003C; 0.0001). Similarly, the <italic>J</italic><sub>a</sub>/<italic>J</italic><sub>g</sub> ratio was positively and linearly correlated with <italic>V</italic><sub>o</sub>/<italic>V</italic><sub>c</sub> ratio (Figure <xref ref-type="fig" rid="F7">7B</xref>, <italic>P</italic> &#x0003C; 0.0001). According to photosynthesis model, an increase in the <italic>V</italic><sub>o</sub>/<italic>V</italic><sub>c</sub> ratio requires a higher ATP/NADPH energy demand from other flexible mechanisms such as cyclic electron flow and alternative electron flow. Increased alternative electron flow promotes the formation of a proton gradient across the thylakoid membrane (&#x00394;pH), which can be used for activating NPQ and ATP synthesis. We found that under high light the rate of ATP supplied from alternative electron sinks [<italic>v</italic><sub>ATP(Flex)</sub>] were much higher in <italic>E. camaldulensis</italic> than in <italic>N. tabacum</italic> (Figure <xref ref-type="fig" rid="F8">8A</xref>), and the rate of alternative electron flow was positively correlated to <italic>v</italic><sub>ATP(Flex)</sub> (Figure <xref ref-type="fig" rid="F8">8B</xref>, <italic>P</italic> &#x0003C; 0.0001). Furthermore, NPQ values under high light were significantly lower in <italic>E. camaldulensis</italic> than in <italic>N. tabacum</italic> (Figure <xref ref-type="fig" rid="F4">4B</xref>), suggesting that the main role for alternative electron flow in <italic>E. camaldulensis</italic> is not to activate NPQ but to provide extra ATP. The greater capacity of the photorespiratory pathway in <italic>E. camaldulensis</italic> plants is sustained by the enhanced alternative electron flow.</p>
<fig id="F7" position="float">
<label>Figure 7</label>
<caption><p><bold>(A)</bold> The value of <italic>J</italic>e(PCO) as a function of <italic>J</italic><sub>a</sub> (electron flux for alternative electron sinks) for leaves of <italic>Eucalyptus camaldulensis</italic> and tobacco; <bold>(B)</bold> The value of <italic>V</italic><sub>o</sub>/<italic>V</italic><sub>c</sub> as a function of <italic>J</italic><sub>a</sub>/<italic>J</italic><sub>g</sub> for leaves of <italic>Eucalyptus camaldulensis</italic> and tobacco. Data were obtained from light response curves (light intensities higher than 300 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>) measured at 25&#x000B0;C and 400 &#x003BC;mol mol<sup>&#x02212;1</sup> CO<sub>2</sub>. Values are means &#x000B1; SE (<italic>n</italic> &#x0003D; 4). The coefficient of correlation (<italic>r</italic>) and significance of correlation (<italic>P</italic>) are 0.98 and &#x0003C;0.0001 for Figure <xref ref-type="fig" rid="F6">6A</xref>, respectively. The coefficient of correlation (<italic>r</italic>) and significance of correlation (<italic>P</italic>) are 0.98 and &#x0003C;0.0001 for Figure <xref ref-type="fig" rid="F6">6B</xref>, respectively.</p></caption>
<graphic xlink:href="fpls-07-01769-g0007.tif"/>
</fig>
<fig id="F8" position="float">
<label>Figure 8</label>
<caption><p><bold>(A)</bold> Light response change in the rate of ATP supplied from other flexible mechanisms rather than electron flow from water to NADP<sup>&#x0002B;</sup> [<italic>v</italic><sub>ATP(Flex)</sub>] for leaves of <italic>Eucalyptus camaldulensis</italic> and tobacco; <bold>(B)</bold> Relationship between the electron flux for alternative electron sinks (<italic>J</italic><sub>a</sub>) and <italic>v</italic><sub>ATP(Flex)</sub> for leaves of <italic>Eucalyptus camaldulensis</italic> and tobacco, and data were obtained from light response curves (light intensities higher than 300 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>) measured at 25&#x000B0;C and 400 &#x003BC;mol mol<sup>&#x02212;1</sup> CO<sub>2</sub>. Values are means &#x000B1; SE (<italic>n</italic> &#x0003D; 4). The coefficient of correlation (<italic>r</italic>) and significance of correlation (<italic>P</italic>) are 0.98 and &#x0003C;0.0001 for Figure <xref ref-type="fig" rid="F7">7B</xref>, respectively.</p></caption>
<graphic xlink:href="fpls-07-01769-g0008.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>In herbaceous C<sub>3</sub> crop species such as <italic>N. tabacum</italic>, spinach, rice and wheat, high stomatal and mesophyll conductance are essential for their strong photosynthetic capacities (Yamori et al., <xref ref-type="bibr" rid="B56">2010</xref>, <xref ref-type="bibr" rid="B57">2011</xref>). However, for sclerophyllous <italic>Eucalyptus camaldulensis</italic>, we found that its high rate of CO<sub>2</sub> assimilation (Figure <xref ref-type="fig" rid="F3">3A</xref>) was accompanied with a low <italic>g</italic><sub>m</sub> (&#x02248;0.12 molm<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>) (Table <xref ref-type="table" rid="T1">1</xref>). Thus, high levels of mesophyll conductance do not appear to be a common mechanism for high rates of photosynthesis in C<sub>3</sub> plants. Surprisingly, in the sclerophyllous <italic>E. camaldulensis</italic>, the high rates of photosynthesis occurred at the low levels of <italic>C</italic><sub>c</sub> (Figure <xref ref-type="fig" rid="F3">3D</xref>), which directly increased the <italic>V</italic><sub>o</sub>/<italic>V</italic><sub>c</sub> ratio (Figure <xref ref-type="fig" rid="F5">5B</xref>). What is more, <italic>E. camaldulensis</italic> showed increased capacities of photorespiratory pathway (Figure <xref ref-type="fig" rid="F5">5C</xref>) and electron flow to alternative sinks (Figure <xref ref-type="fig" rid="F7">7</xref>). Enhancement of photorespiratory pathway increased the release of CO<sub>2</sub> in mitochondria. This photorespired CO<sub>2</sub> can be trapped and reassimilated by chloroplast, thereby boosting photosynthesis (Busch et al., <xref ref-type="bibr" rid="B5">2013</xref>). Concomitantly, the increased photorespiratory pathway in <italic>E. camaldulensis</italic> needs more extra ATP supply from alternative electron sinks rather than electron transfer from water to NADP<sup>&#x0002B;</sup>. Interestingly, the increased alternative electron flow provided essential extra ATP to balance the energy budget and sustain the high rate of photorespiratory pathway, then increasing the rate of photosynthetic CO<sub>2</sub> assimilation. These results highlight that the sclerophyllous <italic>E. camaldulensis</italic> enhanced the capacities of photorespiratory pathway and alternative electron flow to sustain a high rate of photosynthesis.</p>
<sec>
<title>Quantitative limitation analysis of <italic>A</italic><sub>n</sub></title>
<p>In <italic>N. tabacum</italic> leaves, <italic>l</italic><sub>b</sub> was the most important constraining factor for photosynthesis, followed by <italic>l</italic><sub>mc</sub> and <italic>l</italic><sub><italic>s</italic></sub>, being consistent with high levels of stomatal and mesophyll conductance. By comparison, in <italic>E. camaldulensis, l</italic><sub>mc</sub> had the greatest influence while <italic>l</italic><sub><italic>s</italic></sub> was the least limiting factor. This was consistent with the higher <italic>g</italic><sub>s</sub> and lower <italic>g</italic><sub>m</sub> measured for that species. These results confirmed that, the major limiting factor for photosynthesis differs intrinsically between high-photosynthesis herbaceous and sclerophyllous plants. Diffusional limitations of CO<sub>2</sub> are the main reason for lower photosynthetic rates in ferns than in angiosperms (Gago et al., <xref ref-type="bibr" rid="B17">2013</xref>; Carriqui et al., <xref ref-type="bibr" rid="B6">2015</xref>). Mesophyll conductance is the most constraining factor for photosynthesis in ferns (Carriqui et al., <xref ref-type="bibr" rid="B6">2015</xref>). These findings suggested that, not only in low-photosynthesis species (e.g., ferns) but also in some high-photosynthesis sclerophyllous species such as <italic>E. camaldulensis</italic>, mesophyll conductance is the primary limiting factor for photosynthesis. The difference of <italic>g</italic><sub>m</sub> between <italic>E. camaldulensis</italic> and <italic>N. tabacum</italic> is probably determined by their leaf anatomy (Terashima et al., <xref ref-type="bibr" rid="B46">2006</xref>). The thicker cell walls lead to a lower <italic>g</italic><sub>m</sub> in <italic>E. camaldulensis</italic> when compared with <italic>N. tabacum</italic>.</p>
</sec>
<sec>
<title>The rate-limiting step of CO<sub>2</sub> assimilation</title>
<p>The rate of CO<sub>2</sub> assimilation can be limited by RuBP carboxylation and/or RuBP regeneration in C<sub>3</sub> plants (Farquhar et al., <xref ref-type="bibr" rid="B12">1980</xref>; Yamori et al., <xref ref-type="bibr" rid="B56">2010</xref>, <xref ref-type="bibr" rid="B57">2011</xref>). The specific rate-limiting step of CO<sub>2</sub> assimilation is determined by the relative values of <italic>C</italic><sub>c</sub> and <italic>C</italic><sub>trans</sub>. When the value of <italic>C</italic><sub>c</sub> is higher than <italic>C</italic><sub>trans</sub>, the CO<sub>2</sub> assimilation rate is mainly limited by RuBP regeneration. Otherwise, the CO<sub>2</sub> assimilation rate is limited by RuBP carboxylation when <italic>C</italic><sub>c</sub> is lower than <italic>C</italic><sub>trans</sub>. In <italic>N. tabacum</italic> leaves, the value of <italic>C</italic><sub>c</sub> under saturating light was higher than <italic>C</italic><sub>trans</sub>, and thus the rate-limiting step of CO<sub>2</sub> assimilation tended to be RuBP regeneration (Table <xref ref-type="table" rid="T1">1</xref>). On the contrary, the value of <italic>C</italic><sub>c</sub> under saturating light was lower than <italic>C</italic><sub>trans</sub> in <italic>E. camaldulensis</italic>, and thus the rate of CO<sub>2</sub> assimilation was limited by RuBP carboxylation (Table <xref ref-type="table" rid="T1">1</xref>). According to the calculation of <italic>C</italic><sub>c</sub> &#x0003D; <italic>C</italic><sub>i</sub> &#x02212; <italic>A</italic><sub>n</sub>/<italic>g</italic><sub>m</sub>, the value of <italic>C</italic><sub>c</sub> can be affected by three parameters <italic>C</italic><sub>i</sub>, <italic>A</italic><sub>n</sub>, and <italic>g</italic><sub>m</sub>. Here, because <italic>A</italic><sub>n</sub> and <italic>C</italic><sub>i</sub> values under saturating light were similar in <italic>E. camaldulensis</italic> and <italic>N. tabacum</italic> (Figures <xref ref-type="fig" rid="F3">3A,C</xref>), Because the value of <italic>C</italic><sub>c</sub> can be largely determined by <italic>g</italic><sub>m</sub>, the difference in the main rate-limiting step of CO<sub>2</sub> assimilation between <italic>N. tabacum</italic> and <italic>E. camaldulensis</italic> was mainly caused by the contrasts in their mesophyll conductance.</p>
<p>In the herbaceous <italic>N. tabacum</italic>, which has thin, flexible leaves, <italic>g</italic><sub>m</sub> can reach 0.5 mol m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> when plants are exposed to high nitrogen concentrations (Yamori et al., <xref ref-type="bibr" rid="B57">2011</xref>). By comparison, sclerophyllous plants have relatively lower <italic>g</italic><sub>m</sub> values that range between 0.09 and 0.25 mol m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> (Lloyd et al., <xref ref-type="bibr" rid="B29">1992</xref>; Hassiotou et al., <xref ref-type="bibr" rid="B22">2009</xref>). Conductance in the mesophyll can be influenced by leaf anatomical traits such as the cell surface area and the chloroplast surface area that is exposed to intercellular air spaces (Evans et al., <xref ref-type="bibr" rid="B11">1994</xref>; Oguchi et al., <xref ref-type="bibr" rid="B36">2005</xref>; Terashima et al., <xref ref-type="bibr" rid="B47">2011</xref>), chloroplast rearrangements (Tholen et al., <xref ref-type="bibr" rid="B48">2008</xref>), cell wall thickness (Terashima et al., <xref ref-type="bibr" rid="B46">2006</xref>, <xref ref-type="bibr" rid="B47">2011</xref>; Flexas et al., <xref ref-type="bibr" rid="B13">2012</xref>), and LMA (Flexas et al., <xref ref-type="bibr" rid="B16">2008</xref>; Hassiotou et al., <xref ref-type="bibr" rid="B22">2009</xref>). The value of LMA for in <italic>E. camaldulensis</italic> is approximately 169.5 g m<sup>&#x02212;2</sup> (Suganuma et al., <xref ref-type="bibr" rid="B43">2006</xref>), which is much higher than <italic>N. tabacum</italic> (approximately 25 g m<sup>&#x02212;2</sup>) (Yamori et al., <xref ref-type="bibr" rid="B56">2010</xref>). The large differences of leaf anatomical traits between <italic>E. camaldulensis</italic> and <italic>N. tabacum</italic> might result in the diversity of <italic>g</italic><sub>m</sub>.</p>
</sec>
<sec>
<title>Photorespiration</title>
<p>We found that the capacity of the photorespiratory pathway was greater for <italic>E. camaldulensis</italic> than for <italic>N. tabacum</italic> (Figures <xref ref-type="fig" rid="F5">5B,C</xref>). Rubisco is a dual functional enzyme that catalyzes the carboxylation of RuBP, but also oxygenates RuBP in photorespiration. A lower <italic>C</italic><sub>c</sub> in <italic>E. camaldulensis</italic> would increase the rate of RuBP oxygenation by Rubisco. Photorespiration begins with RuBP oxygenation that generates glycolate-2-phosphate and glycerate-3-phosphateare. To maintain a steady-state high rate of photosynthesis in <italic>E. camaldulensis</italic>, the RuBP pool must remain stable. In chloroplast, the steady-state of RuBP pool depends on two different RuBP regeneration pathways: the Calvin-Benson cycle and the photorespiratory pathway. Impairment of photorespiratory pathway induced a gradient decrease in photosynthetic rate at atmospheric CO<sub>2</sub> concentration (Takahashi et al., <xref ref-type="bibr" rid="B44">2007</xref>). Importantly, during steady-state phases, the rates of RuBP oxygenation and RuBP regeneration through the photorespiratory pathway must be balanced. Under high light, <italic>E. camaldulensis</italic> accelerate the photorespiratory pathway to favor the regeneration of RuBP via glycerate-3-phosphate, thereby preventing the RuBP pool from shrinking.</p>
<p>A reduction in <italic>C</italic><sub>c</sub> also accelerates the production of photorespiratory intermediates, e.g., glycine and glycerate, which inhibit the Calvin-Benson cycle (Chastain and Ogren, <xref ref-type="bibr" rid="B7">1989</xref>; Eisenhut et al., <xref ref-type="bibr" rid="B9">2007</xref>; Timm et al., <xref ref-type="bibr" rid="B49">2012</xref>, <xref ref-type="bibr" rid="B50">2015</xref>). In <italic>Arabidopsis thaliana</italic> plants with elevated glycine decarboxylase activity, the rapid acceleration of the photorespiratory pathway lowers the accumulation of photorespiratory metabolites including those which impair Rubisco activation and possibly the activity of other enzymes of the Calvin-Benson cycle, increasing the performance of the Calvin-Benson cycle (Timm et al., <xref ref-type="bibr" rid="B49">2012</xref>, <xref ref-type="bibr" rid="B50">2015</xref>). Furthermore, <italic>N. tabacum</italic> plants grown under high light and high nitrogen concentration up-regulate photorespiratory pathway to maintain high rates of photosynthesis (Huang et al., <xref ref-type="bibr" rid="B27">2014</xref>, <xref ref-type="bibr" rid="B26">2016</xref>). To overcome those detrimental effects, the photorespiratory pathway should be enhanced in <italic>E. camaldulensis</italic>. In addition, although CO<sub>2</sub> is released in the mitochondria in the photorespiratory pathway, C<sub>3</sub> plants can trap photorespired CO<sub>2</sub> within individual mesophyll cell. This causes chloroplast CO<sub>2</sub> concentrations to rise and, ultimately, improves the rate of photosynthesis in C<sub>3</sub> plants (Busch et al., <xref ref-type="bibr" rid="B5">2013</xref>). Taking together, the enhanced photorespiratory capacity strongly contributes to the high rate of CO<sub>2</sub> assimilation in <italic>E. camaldulensis</italic>.</p>
</sec>
<sec>
<title>Alternative electron flow</title>
<p>We were surprised to learn that, under saturating illumination, alternative electron flow was enhanced in <italic>E. camaldulensis</italic> when compared with <italic>N. tabacum</italic>. The water-water cycle, nitrate reduction and malate shunt are potential candidates responsible for this increase in alternative electron flow (Yi et al., <xref ref-type="bibr" rid="B58">2014</xref>). When plants are illuminated at atmospheric CO<sub>2</sub> and O<sub>2</sub>, most of this alternative flow accounts for the electron flux to oxygen and oxidized ascorbic acid (Miyake and Yokota, <xref ref-type="bibr" rid="B33">2000</xref>; Makino et al., <xref ref-type="bibr" rid="B32">2002</xref>). Thus, we concluded that the WWC activity was greater in <italic>E. camaldulensis</italic>. During the early phase of photosynthetic induction in rice, the WWC first generates a &#x00394;pH across the thylakoid membranes to form NPQ and supply ATP for carbon assimilation (Neubauer and Yamamoto, <xref ref-type="bibr" rid="B34">1992</xref>; Miyake and Yokota, <xref ref-type="bibr" rid="B33">2000</xref>; Makino et al., <xref ref-type="bibr" rid="B32">2002</xref>). However, when photosynthesis reaches a steady-state rate, the WWC no longer maintains a high NPQ but instead provides additional ATP for primary metabolism in rice leaves (Makino et al., <xref ref-type="bibr" rid="B32">2002</xref>). Our light response curves indicated that NPQ values under high light were significantly lower in <italic>E. camaldulensis</italic> (Figure <xref ref-type="fig" rid="F4">4B</xref>). Because the NPQ activation relies on the acidification of thylakoid lumen, and which also depresses electron transport through Cyt <italic>b</italic><sub>6</sub>/<italic>f</italic> complex via &#x0201C;photosynthetic control,&#x0201D; this result suggested the higher levels of lumen acidification in leaves of <italic>N. tabacum</italic> when illuminated at high light. Therefore, the steady-state rate of WWC under intense illumination in <italic>E. camaldulensis</italic> mainly contributed to additional ATP synthesis rather than lumen acidification, which is consistent with previous studies on the role of the WWC (Makino et al., <xref ref-type="bibr" rid="B32">2002</xref>; Huang et al., <xref ref-type="bibr" rid="B26">2016</xref>).</p>
<p>In electron flow from PSII to NADP<sup>&#x0002B;</sup>, the stoichiometry of the ATP/NADPH ratio is thought to be 1.29 (Sacksteder et al., <xref ref-type="bibr" rid="B37">2000</xref>; Seelert et al., <xref ref-type="bibr" rid="B38">2000</xref>). By comparison, each Rubisco oxygenation consumes 3.5 ATP and 2 NADH equivalents in total. Therefore, the occurrence of photorespiratory pathway needs a higher ATP/NADPH ratio than 1.29 to maintain primary metabolism (Edwards and Walker, <xref ref-type="bibr" rid="B8">1983</xref>; Walker et al., <xref ref-type="bibr" rid="B53">2014</xref>). Under high light and ambient CO<sub>2</sub>, the ATP/NADPH ratio required by CO<sub>2</sub> assimilation, photorespiration, and nitrite assimilation is approximately 1.6 (Walker et al., <xref ref-type="bibr" rid="B53">2014</xref>). Furthermore, the ATP/NADPH energy demand for primary metabolism will rise as photorespiration increases. As a result, the rate of ATP supplied from other flexible pathways must be higher in <italic>E. camaldulensis</italic> due to its higher rate of photorespiratory pathway. Cyclic electron flow and the WWC are the main flexible pathways that contribute to extra ATP synthesis under high light and atmospheric CO<sub>2</sub> concentrations (Makino et al., <xref ref-type="bibr" rid="B32">2002</xref>; Walker et al., <xref ref-type="bibr" rid="B53">2014</xref>; Huang et al., <xref ref-type="bibr" rid="B25">2015</xref>, <xref ref-type="bibr" rid="B26">2016</xref>). Here, we found that the greater rate of photorespiration was accompanied by higher alternative electron flow (Figure <xref ref-type="fig" rid="F7">7</xref>), and the rate of ATP supplied from other flexible mechanisms was positively correlated to the rate of electron flow to alternative sinks (Figure <xref ref-type="fig" rid="F8">8B</xref>). Therefore, it appears that <italic>E. camaldulensis</italic> enhances the alternative electron flow to balance the ATP/NADPH energy demand for high rates of photorespiration.</p>
</sec>
</sec>
<sec sec-type="conclusions" id="s5">
<title>Conclusions</title>
<p>In order to illustrate the potential different mechanisms underlying the high rates of photosynthesis in sclerophyllous and herbaceous C<sub>3</sub> plants. Gas exchange and chlorophyll fluorescence were measured in <italic>E. camaldulensis</italic> (sclerophyllous) and <italic>N. tabacum</italic> (herbaceous). Although <italic>E. camaldulensis</italic> and <italic>N. tabacum</italic> had similar <italic>A</italic><sub>n</sub> under saturating light, the value of <italic>g</italic><sub>m</sub> differed largely between <italic>N. tabacum</italic> and <italic>E. camaldulensis</italic>. In <italic>N. tabacum</italic>, a higher <italic>g</italic><sub>m</sub> increased the value of <italic>C</italic><sub>c</sub>, resulting in the rate-limiting step of CO<sub>2</sub> assimilation tended to be RuBP regeneration. On the contrary, RuBP carboxylation was the main rate-limiting step of CO<sub>2</sub> assimilation in <italic>E. camaldulensis</italic> because CO<sub>2</sub> diffusion to the chloroplasts was restricted by a lower <italic>g</italic><sub>m</sub>. Therefore, the rate-limiting step of CO<sub>2</sub> assimilation appears to be more related to <italic>g</italic><sub>m</sub> rather than <italic>g</italic><sub>s</sub> in high-photosynthesis species. The lower <italic>C</italic><sub>c</sub> aggravated RuBP oxygenation in <italic>E. camaldulensis</italic>. Meanwhile, increased flux through the photorespiratory pathway minimizes the accumulation of photorespiratory metabolites, benefiting photosynthetic CO<sub>2</sub> fixation in the Calvin-Benson cycle in <italic>E. camaldulensis</italic>. In order to balance the ATP/NADPH energy demand for high rates of photorespiration, <italic>E. camaldulensis</italic> up-regulated alternative electron flow to provide extra ATP. Thus, coordination of photorespiratory pathway and alternative electron flow is crucial for the high rates of CO<sub>2</sub> assimilation in <italic>E. camaldulensis</italic>. These results highlight the different mechanisms responsible for high rates of photosynthesis in the sclerophyllous plant <italic>E. camaldulensis</italic> and the herbaceous plant <italic>N. tabacum</italic>.</p>
</sec>
<sec id="s6">
<title>Author contributions</title>
<p>WH and YT conceived and designed research. WH conducted experiments. WH, GY, and WY analyzed data. WH wrote the manuscript.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<ack><p>This work was supported by the National Natural Science Foundation of China (Grant 31300332), and Youth Innovation Promotion Association of the Chinese Academy of Sciences.</p>
</ack>
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