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<journal-id journal-id-type="publisher-id">Front. Physiol.</journal-id>
<journal-title>Frontiers in Physiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Physiol.</abbrev-journal-title>
<issn pub-type="epub">1664-042X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
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<article-meta>
<article-id pub-id-type="publisher-id">1464989</article-id>
<article-id pub-id-type="doi">10.3389/fphys.2024.1464989</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Physiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Identification and expression profiling of neuropeptides and neuropeptide receptor genes in a natural enemy, <italic>Coccinella septempunctata</italic>
</article-title>
<alt-title alt-title-type="left-running-head">Han et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fphys.2024.1464989">10.3389/fphys.2024.1464989</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" equal-contrib="yes">
<name>
<surname>Han</surname>
<given-names>ShunDa</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>&#x2020;</sup>
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<contrib contrib-type="author" equal-contrib="yes">
<name>
<surname>Chen</surname>
<given-names>JunJie</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>&#x2020;</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>ZhaoHan</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>MaoSen</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Guo</surname>
<given-names>PengHui</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>XiaoXiao</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>LongRui</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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<contrib contrib-type="author">
<name>
<surname>Shen</surname>
<given-names>ZhongJian</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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<contrib contrib-type="author" corresp="yes">
<name>
<surname>Zhang</surname>
<given-names>LiSheng</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
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<aff id="aff1">
<sup>1</sup>
<institution>College of Horticulture and Landscape Architecture, Tianjin Agricultural University</institution>, <addr-line>Tianjin</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>State Key Laboratory for Biology of Plant Diseases and Insect Pests</institution>, <institution>Key Laboratory of Natural Enemy Insects</institution>, <institution>Ministry of Agriculture and Rural Affairs</institution>, <institution>Institute of Plant Protection</institution>, <institution>Chinese Academy of Agricultural Sciences</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Key Laboratory of Animal Biosafety Risk Prevention and Control (North) of Ministry of Agriculture and Rural Affairs</institution>, <institution>Shanghai Veterinary Research Institute</institution>, <institution>Chinese Academy of Agricultural Sciences</institution>, <addr-line>Shanghai</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/390688/overview">Hongbo Jiang</ext-link>, Southwest University, China</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/790926/overview">Donghun Kim</ext-link>, Kyungpook National University, Republic of Korea</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1129228/overview">Na Yu</ext-link>, Nanjing Agricultural University, China</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: LiSheng Zhang, <email>zhangleesheng@163.com</email>
</corresp>
<fn fn-type="equal" id="fn001">
<label>
<sup>&#x2020;</sup>
</label>
<p>These authors have contributed equally to this work</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>09</day>
<month>10</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1464989</elocation-id>
<history>
<date date-type="received">
<day>30</day>
<month>07</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>09</day>
<month>09</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Han, Chen, Liu, Zhang, Guo, Liu, Wang, Shen and Zhang.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Han, Chen, Liu, Zhang, Guo, Liu, Wang, Shen and Zhang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Introduction</title>
<p>Neuropeptides and their receptors constitute diverse and abundant signal molecules in insects, primarily synthesized and released primarily from neurosecretory cells within the central nervous system Neuropeptides act as neurohormones and euromodulators, regulating insect behavior, lifecycle, and physiology by binding to receptors on cell surface. As a typical natural predator of agricultural pests, the lady beetle, <italic>Coccinella septempunctata</italic>, has been commercially mass-cultured and widely employed in pest management. Insect diapause is a physiological and ecological adaptative strategy acquired in adverse environments. In biological control programs, knowledge about diapause regulation in natural enemy insects provides important insight for improving long-term storage, transportation, and field adoption of these biological control agents. However, little is known about the function of neuropeptides and their receptors in controlling reproductive diapause of <italic>C. septempunctata</italic>. It is unclear which neuropeptides affect diapause of <italic>C. septempunctata</italic>.</p>
</sec>
<sec>
<title>Methods</title>
<p>In this study, RNA-seq technology and bioinformatics were utilized to investigate genes encoding neuropeptides and their receptors in female adults of <italic>C. septempunctata</italic>. Quantitative real-time PCR (qRT-PCR) analysis was employed to examine gene expression across different development/diapause stages.</p>
</sec>
<sec>
<title>Results</title>
<p>A total of 17 neuropeptide precursor genes and 9 neuropeptide receptor genes were identified, implicated in regulating various behaviors such as feeding, reproduction, and diapause. Prediction of partial mature neuropeptides from precursor sequences was also performed using available information about these peptides from other species, conserved domains and motifs. During diapause induction, the mRNA abundance of <italic>AKH</italic> was notably higher on the 10th day compared to non-diapause females, but decreased by the 20th day. In contrast, <italic>GPHA</italic> showed lower expression levels on the 5th day of diapause induction compared to non-diapause females, but increased significantly by the 15th and 20th days. <italic>NPF</italic> was higher expressed in head and midgut while <italic>DH</italic> showed higher expression in the fat body and midgut. Additionally, <italic>NPF</italic> expression remained consistently lower throughout all stages of diapause induction compared to non-diapause conditions in females.</p>
</sec>
<sec>
<title>Discussion</title>
<p>This study represents the first sequencing, identification, and expression analysis of neuropeptides and neuropeptide receptor genes in <italic>C. septempunctata</italic>. Our results could provide a foundational framework for further investigations into the presence, functions, and potential targets of neuropeptides and their receptors, particularly in devising novel strategies for diapause regulation in <italic>C. septempunctata</italic>.</p>
</sec>
</abstract>
<kwd-group>
<kwd>neuropeptides</kwd>
<kwd>transcriptome</kwd>
<kwd>phylogenetic tree</kwd>
<kwd>expression analysis</kwd>
<kwd>
<italic>Coccinella septempunctata</italic>
</kwd>
</kwd-group>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Invertebrate Physiology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>Neuropeptides are pivotal in regulating essential physiological processes such as development, reproduction, circadian rhythm, and feeding in insects. They are predominantly synthesized and released from neurosecretory cells within the central nervous system (CNS) (<xref ref-type="bibr" rid="B29">N&#xe4;ssel and Winther, 2010</xref>; <xref ref-type="bibr" rid="B34">Schoofs et al., 2017</xref>; <xref ref-type="bibr" rid="B1">Abou El Asrar et al., 2020</xref>; <xref ref-type="bibr" rid="B39">Toprak, 2020</xref>). Most of the known neuropeptides are oligopeptides or small protein molecules composed of several to tens of amino acids (<xref ref-type="bibr" rid="B34">Schoofs et al., 2017</xref>; <xref ref-type="bibr" rid="B1">Abou El Asrar et al., 2020</xref>). Biologically active neuropeptides undergo intricate post-translational processing from their precursor forms. Acting as neuromodulators or neurohormones, neuropeptides transmit signals by binding to specific membrane receptors. Most neuropeptide receptors belong to the G protein-coupled receptor family, initiating intracellular cascade reactions upon coupling with G proteins in the cell membrane, ultimately eliciting cellular responses (<xref ref-type="bibr" rid="B4">Audsley and Down, 2015</xref>; <xref ref-type="bibr" rid="B32">Rosenbaum et al., 2009</xref>). Some neuropeptide receptors are not GPCRs, for example, insulin-like receptor is tyrosine kinase receptors (TKR) (<xref ref-type="bibr" rid="B8">Choi and Bai, 2023</xref>). Recently, high-throughput sequencing techniques (transcriptome and genome analysis) and bioinformatics technology has greatly promoted the prediction and identification of insect neuropeptides and their receptors (<xref ref-type="bibr" rid="B38">Tanaka et al., 2014</xref>; <xref ref-type="bibr" rid="B44">Wang et al., 2018</xref>; <xref ref-type="bibr" rid="B20">Li FF. et al., 2020</xref>). Over the past 2&#xa0;decades, substantial progress has been made in identifying novel neuropeptides and homologous receptors across various insect species of significance in human health, agriculture, and ecological environments. Examples include the discovery of 35 neuropeptides and peptide hormones in <italic>Anopheles gambiae</italic> (<xref ref-type="bibr" rid="B30">Riehle et al., 2002</xref>), 37 neuropeptides in <italic>Bombyx mori</italic> (<xref ref-type="bibr" rid="B31">Roller et al., 2008</xref>), 36 neuropeptides in <italic>Apis mellifera</italic> (<xref ref-type="bibr" rid="B13">Hummon et al., 2006</xref>), and 41 genes encoding neuropeptides and protein hormones in <italic>Tribolium castaneum</italic> (<xref ref-type="bibr" rid="B19">Li et al., 2008</xref>).</p>
<p>The lady beetle, <italic>C. septempunctata</italic>, is a natural predator of agricultural pests, and it is economically important for controlling aphids, whiteflies, mites, thrips, and lepidopteran pests (<xref ref-type="bibr" rid="B7">Chen et al., 2023</xref>). This beneficial insect has been extensively mass-cultured and deployed in greenhouses and farmlands across Europe, Asia, and North America (<xref ref-type="bibr" rid="B47">Yang et al., 2014</xref>). In Northern China, <italic>C. septempunctata</italic> adults enter winter diapause in response to short photoperiods and low temperatures, and our previous work identified the specific conditions that elicit diapause (<xref ref-type="bibr" rid="B41">Wang et al., 2013</xref>). Diapause creates challenges and opportunities for biological control. While diapause may interrupt rearing activities and reduce field effectiveness (as diapausing beetles do not feed on pests), regulating diapause can enhance the long-term storage and timely deployment of <italic>C. septempunctata</italic>. Mastering the mechanism of insect diapause and regulating the diapause of natural enemy insects can promote the shelf-life and effective release of mass-produced predatory ladybeetles. Given the pivotal role of neuropeptide signaling systems in physiological behavioral processes, as well as the high specificity and low target interference of neuropeptide receptors, insect neuropeptides are considered ideal targets for cultivating specific insect regulators. Thus, elucidating the structure and function of neuropeptides and their receptors involved in <italic>C. septempunctata</italic> diapause is crucial.</p>
<p>In this study, we employed transcriptome sequencing and bioinformatics analysis to identify genes encoding neuropeptide precursors and their receptors in <italic>C. septempunctata</italic>. Additionally, we conducted structural analysis and predicted the mature peptides of the identified neuropeptide precursors. Neuropeptides were classified into subclasses through phylogenetic analysis. Using qRT-PCR, we examined the expression profiles of partial neuropeptides precursor in five different tissues (head, thorax, fat body, ovary and midgut) of female adults at diapause-inducing/non-diapause inducing condition. The sequences of these identified genes serve as a foundational resource for further exploring the roles of neuropeptides precursor in diapause regulation in <italic>C. septempunctata</italic>.</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>2 Materials and methods</title>
<sec id="s2-1">
<title>2.1 Insect rearing and tissue collection</title>
<p>The <italic>C. septempunctata</italic> laboratory colony initially originated from field-collected adults from the wheat field at the east gate of the Chinese academy of agricultural sciences located in Haidian district, Beijing, China, in 2010. Offspring of those lady beetles were maintained at 24&#xb0;C &#xb1; 1&#xb0;C and 70% relative humidity (RH) under a long-day photoperiod condition (normal developmental conditions) (16&#xa0;h:8&#xa0;h, light/dark) and fed with fresh pea aphids (<italic>Aphis glycines</italic>) daily (<xref ref-type="bibr" rid="B7">Chen et al., 2023</xref>; <xref ref-type="bibr" rid="B41">Wang et al., 2013</xref>; <xref ref-type="bibr" rid="B23">Li et al., 2022</xref>). To induce diapause, newly emerged adults were transferred to an environment with the following conditions: 18&#xb0;C &#xb1; 1&#xb0;C; 10&#xa0;L: 14 D (10&#xa0;h light: 14&#xa0;h dark per 24&#xa0;h); RH 70% &#xb1; 10% (diapause-inducing conditions).</p>
<p>To evaluate the relative mRNAs expression of the neuropeptides precursor genes and neuropeptide receptor genes at different stages and tissues, we sampled the head, thorax, fat body, ovary and midgut of the newly emerged adults (NE), five-day-old female adults (N5), ten-day-old female adults (N10), fifteen-day-old female adults (N15) and twenty-day-old female adults (N20) of <italic>C. septempunctata</italic> under non-diapausing conditions. We also sampled the head, thorax, fat body, ovary and midgut of five-day-old female adults (D5), ten-day-old female adults (D10), fifteen-day-old female adults (D15) and twenty-day-old female adults (D20) of <italic>C. septempunctata</italic> under diapause-inducing conditions. All samples were collected, cleaned, and frozen using liquid nitrogen. The samples were then stored in a refrigerator (&#x2212;80&#xa0;&#xb0;C) until analyses were done. Each treatment was performed with three biological replicates, and each replicate was made up of six female adults.</p>
</sec>
<sec id="s2-2">
<title>2.2 RNA extraction and RNA-seq</title>
<p>Total RNA was extracted from each sample using Trizol Reagent (Invitrogen, Waltham, MA, United States), according to the manufacturer&#x2019;s protocol for insect tissues. The quality and quantity of total RNA in each sample were assessed using an Agilent 2,100 Bioanalyzer (Agilent Technologies, Palo Alto, CA, United States) and NanoDrop (Thermo Fisher Scientific, Waltham, MA, United States). RNA-seq libraries were prepared from the heads of <italic>C. septempunctata</italic>, with four replicate libraries prepared. The libraries were sequenced separately using the DNBSEQ-T7 sequencer.</p>
</sec>
<sec id="s2-3">
<title>2.3 Transcriptome data analysis</title>
<p>Unigene expression levels were calculated and normalized to RPKM (Reads Per kb per Million reads). Unigene sequences were aligned by BLASTx and TBLASTx searches against the protein database (<ext-link ext-link-type="uri" xlink:href="http://blast.ncbi.nlm.nih.gov/">http://blast.ncbi.nlm.nih.gov/</ext-link>) such as NCBI non-redundant protein (Nr) database, SwissProt database, KEGG Ontholog database (KO) and Gene Ontology (GO) for annotation information. Transcriptomic (RNA-seq) data obtained from <italic>C</italic>. <italic>septempunctata</italic> were utilized to identify neuropeptides precursor and their receptors.</p>
</sec>
<sec id="s2-4">
<title>2.4 Sequence analysis and phylogenetic tree analysis</title>
<p>Amino acid sequences of neuropeptide sequences of <italic>C. septempunctata</italic> were determined using the ExPASy Translate tool (<ext-link ext-link-type="uri" xlink:href="https://web.expasy.org/translate/">https://web.expasy.org/translate/</ext-link>). Conserved domain analysis was conducted with the CDD Search program of the National Center for Biotechnology Information (NCBI) web server. To investigate the evolutionary relationships of neuropeptide sequences and neuropeptide receptor, the sequences of various species (<xref ref-type="sec" rid="s12">Supplementary Tables S1 and S2</xref>) were downloaded from the NCBI and aligned with sequences of neuropeptide sequences using ClustalW 2 and ESPript 3.0 webserver. For determining protein sequence similarities and secondary structure information, the model of the neuropeptide protein was constructed with SWISS-MODEL (<ext-link ext-link-type="uri" xlink:href="https://swissmodel.expasy.org/">https://swissmodel.expasy.org/</ext-link>). Phylogenetic trees were constructed using the best-fit nucleotide substitution model (WAG) and a bootstrap analysis with 1,000 replicates in the MEGA v.11 software.</p>
</sec>
<sec id="s2-5">
<title>2.5 Times and tissues expression analysis of <italic>C. septempunctata</italic> female adults</title>
<p>Total RNA was extracted from female tissues (including head, thorax, fat body ovary and midgut) of <italic>C. septempunctata</italic> under different inducing condition using a RNAisoPlus Total RNA IsolationKit (Takara, Dalian, China) according to the manufacturer&#x2019;s protocol. The integrity and purity of total RNA in all samples were assessed by 1% agarose gel electrophoresis, and RNA quantity was measured using a P-class Nanophotometer (Implen, Germany). For cDNA synthesis, 1&#xa0;&#x3bc;g of total RNA was reverse transcribed to cDNA using TransScript<sup>&#xae;</sup>One-Step gDNA Removal and cDNA Synthesis SuperMix (TransGen Biotech, Beijing, China) under the following conditions: 42&#xb0;C for 30&#xa0;min, and 85&#xb0;C for 5&#xa0;s. Subsequently, real-time qRT-PCR was done using TOROGreen<sup>&#xae;</sup> 5G qPCR Premix (Toroid Technology Limited) and a LightCycler<sup>&#xae;</sup> 96 Instrument (Roche, Switzerland). All reactions were run in triplicates, with a total volume of 20&#xa0;&#x3bc;L, and each reaction consisted of 10&#xa0;&#x3bc;L TOROGreen Premix, 0.8&#xa0;&#x3bc;L of each specific primer (<xref ref-type="sec" rid="s12">Supplementary Table S1</xref>), 1&#xa0;&#x3bc;L sample cDNA, and 7.4&#xa0;&#x3bc;L nuclease-free water. PCR amplification of the genes was conducted under the following conditions: 95&#xb0;C for 5&#xa0;min, followed by 40 cycles at 98&#xb0;C for 10&#xa0;s and 55&#x25e6;C&#x2013;59&#xb0;C for 20&#xa0;s. A dissociation step cycle (95&#xb0;C for 10&#xa0;s, 65&#xb0;C for 60&#xa0;s, and from 65&#xb0;C to 97&#xb0;C at increments of 0.2&#xb0;C/s; 5 readings/&#xb0;C) was added for the melting curve analysis. When the reactions were complete, CT values were determined using fixed threshold settings. The relative expression levels of genes were analyzed using the comparative 2<sup>&#x2212;&#x394;&#x394;Ct</sup> quantitation method (<xref ref-type="bibr" rid="B26">Livak and Schmittgen, 2001</xref>), and abundance was normalized to the <italic>CsActin</italic> transcript level (<xref ref-type="bibr" rid="B19">Li et al., 2008</xref>; <xref ref-type="bibr" rid="B23">Li et al., 2022</xref>). A total of 3 independent biological samples were included for each group, and three technical replicates of each biological sample were processed for all reactions.</p>
</sec>
<sec id="s2-6">
<title>2.6 Statistical analysis</title>
<p>Data (mean &#xb1; standard error) of the relative expression levels from various samples were subjected to ANOVA (one-way analysis of variance), followed by Tukey&#x2019;s significance difference tests implemented in SPSS Statistics 17.0 (IBM SPSS Statistics, Chicago, IL, United States). Data (mean &#xb1; standard error) of the relative expression levels from various samples were subjected to <italic>t</italic>-test in Graph Pad Prism (Version 9.0). Expression patterns of neuropeptides precursor and neuropeptide receptors across different tissues of female <italic>C. septempunctata</italic> were all visualized using Graph Pad Prism (Version 9.0).</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>3 Results</title>
<sec id="s3-1">
<title>3.1 Transcriptome sequencing and sequence assembly</title>
<p>The total transcriptome sequencing provided approximately 193.5 million reads (19.35&#xa0;Gb). After removing low-quality, adaptor, and contaminated sequence reads, the clean reads of each sample reach to 6.44&#xa0;Gb. For annotations of unigenes to Nr, KEGG and GO databases, 14,094 (65.23%) were annotated using the NCBI-Nr database; 13,245 (61.30%) were annotated by KEGG; 7,079 (32.76%) were annotated by GO (<xref ref-type="table" rid="T1">Table 1</xref>). The raw sequence reads were deposited in NCBI Sequence Read Archive under the accession number PRJNA1154946.</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Summary of <italic>C. septempunctata</italic> transcriptome assembly.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Statistics project</th>
<th align="left">Number</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Clean reads from all samples</td>
<td align="left">38.7&#xa0;Gb</td>
</tr>
<tr>
<td align="left">Q20 (%)</td>
<td align="left">97.69&#x2013;97.96</td>
</tr>
<tr>
<td align="left">Q30 (%)</td>
<td align="left">92.77&#x2013;93.59</td>
</tr>
<tr>
<td align="left">Nr ration</td>
<td align="left">65.23%</td>
</tr>
<tr>
<td align="left">KEGG ration</td>
<td align="left">61.30%</td>
</tr>
<tr>
<td align="left">GO ration</td>
<td align="left">32.76%</td>
</tr>
<tr>
<td align="left">Total Raw Reads (M)</td>
<td align="left">45.57</td>
</tr>
<tr>
<td align="left">Total Clean Reads (M)</td>
<td align="left">42.93&#x2013;43.16</td>
</tr>
<tr>
<td align="left">Total Mapping Ratio (%)</td>
<td align="left">94.19&#x2013;94.70</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s3-2">
<title>3.2 Identification of <italic>C. septempunctata</italic> neuropeptides precursor and their receptors</title>
<p>Using the reported neuropeptides precursor and their receptors of other insect species in NCBI as queries BLAST searching was performed. We identified a total of 17 neuropeptide precursor transcripts (<xref ref-type="table" rid="T2">Table 2</xref>) and 12 receptor transcripts encoding 9 neuropeptide receptors (<xref ref-type="table" rid="T3">Table 3</xref>) from in the transcriptome databases of <italic>C. septempunctata</italic> head, including <italic>Bursicon</italic> (<italic>Bur</italic>), <italic>Neuropeptide F</italic> (<italic>NPF</italic>), <italic>Short neuropeptide F</italic> (<italic>sNPF</italic>), <italic>FMRFamide neuropeptides</italic> (<italic>FMRF</italic>), <italic>PBAN-type neuropeptides-like</italic> (<italic>PBAN</italic>), <italic>Tachykinin</italic> (<italic>TK</italic>), <italic>Prothoracicostatic peptide</italic> (<italic>PTTH</italic>), <italic>Adipokin hormo</italic> (<italic>AKH</italic>), <italic>Cardioactive peptide</italic> (<italic>CCAP</italic>), <italic>Prohormone-2</italic> (<italic>PH</italic>), <italic>SIFamide neuropeptide</italic> (<italic>SIFamide</italic>), <italic>Diuretic hormone 37</italic> (DH), <italic>Ion transport peptide</italic> (<italic>ITP</italic>), <italic>Glycoprotein hormone alpha 2</italic> (<italic>GPHA</italic>), <italic>Glycoprotein hormone beta-5</italic> (<italic>GPHB</italic>), <italic>Neuropeptide-like precursor</italic> (<italic>NPL</italic>) and <italic>Allatotropin I preprohormone precursor</italic> (AT), <italic>Insulin-like peptide receptor</italic> (<italic>InR</italic>), <italic>Neuropeptides capa receptor</italic> (<italic>CAPAR</italic>), <italic>neuropeptide SIFamide receptor</italic> (<italic>SIFR</italic>), <italic>D. hormone receptor</italic> (<italic>DHR</italic>), <italic>CCHamide-1 receptor</italic> (<italic>CCH1R</italic>), <italic>CCHamide-2 receptor</italic> (<italic>CCH2R</italic>), <italic>Trissin receptor</italic> (<italic>TrR</italic>), <italic>RYamide receptor 1</italic> (RY1R), <italic>RYamide receptor 2</italic> (RY2R), <italic>Sex peptide receptor 1</italic> (SPR) and <italic>Tachykinin-like peptides receptor</italic> (<italic>TKR</italic>).</p>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Neuropeptides precursor identified from <italic>C. septempunctata</italic>.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th rowspan="2" align="left">Gene name</th>
<th rowspan="2" align="left">Unigene ID</th>
<th align="left">ORF</th>
<th colspan="3" align="left">Homology search with known protein</th>
<th align="left"/>
</tr>
<tr>
<th align="center">(aa)</th>
<th align="left">Species</th>
<th align="left">E-value</th>
<th align="left">Accesion No.</th>
<th align="left">Identity (%)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">
<italic>Bursicon</italic>
</td>
<td align="left">Csep033675.1</td>
<td align="left">169</td>
<td align="left">Sitophilus oryzae</td>
<td align="left">2e-87</td>
<td align="left">XP_030754853.1</td>
<td align="left">82.47</td>
</tr>
<tr>
<td align="left">
<italic>Neuropeptide F</italic>
</td>
<td align="left">Csep029464.1</td>
<td align="left">123</td>
<td align="left">
<italic>Zophobas atratus</italic>
</td>
<td align="left">1e-25</td>
<td align="left">UXO98088.1</td>
<td align="left">53.57</td>
</tr>
<tr>
<td align="left">
<italic>Short neuropeptide F</italic>
</td>
<td align="left">Csep029051</td>
<td align="left">97</td>
<td align="left">
<italic>Coccinella septempunctata</italic>
</td>
<td align="left">6e-150</td>
<td align="left">XM_044905695.1</td>
<td align="left">100.00</td>
</tr>
<tr>
<td align="left">
<italic>FMRFamide neuropeptides</italic>
</td>
<td align="left">Csep040955</td>
<td align="left">207</td>
<td align="left">
<italic>Harmonia axyridis</italic>
</td>
<td align="left">4e-111</td>
<td align="left">XP_045478717.1</td>
<td align="left">78.00</td>
</tr>
<tr>
<td align="left">
<italic>PBAN-type neuropeptides-like</italic>
</td>
<td align="left">Csep018229</td>
<td align="left">145</td>
<td align="left">
<italic>Nicrophorus vespilloides</italic>
</td>
<td align="left">1e-04</td>
<td align="left">XP_017786058.1</td>
<td align="left">96.00</td>
</tr>
<tr>
<td align="left">
<italic>Tachykinin</italic>
</td>
<td align="left">Csep038274</td>
<td align="left">285</td>
<td align="left">
<italic>Harmonia axyridis</italic>
</td>
<td align="left">6e-115</td>
<td align="left">XP_045478364.1</td>
<td align="left">67.29</td>
</tr>
<tr>
<td align="left">
<italic>Prothoracicostatic peptide</italic>
</td>
<td align="left">Csep039735</td>
<td align="left">191</td>
<td align="left">
<italic>Coccinella septempunctata</italic>
</td>
<td align="left">0.0</td>
<td align="left">XM_044892713.1</td>
<td align="left">100.00</td>
</tr>
<tr>
<td align="left">
<italic>Adipokin hormo</italic>
</td>
<td align="left">Csep015456</td>
<td align="left">71</td>
<td align="left">
<italic>Asbolus verrucosus</italic>
</td>
<td align="left">6e-20</td>
<td align="left">RZB41086.1</td>
<td align="left">51.40</td>
</tr>
<tr>
<td align="left">
<italic>Cardioactive peptide</italic>
</td>
<td align="left">Csep001786</td>
<td align="left">145</td>
<td align="left">
<italic>Coccinella septempunctata</italic>
</td>
<td align="left">3e-70</td>
<td align="left">XP_045465746.1</td>
<td align="left">100</td>
</tr>
<tr>
<td align="left">
<italic>Prohormone-2</italic>
</td>
<td align="left">Csep034584</td>
<td align="left">299</td>
<td align="left">
<italic>Tribolium castaneum</italic>
</td>
<td align="left">6e-64</td>
<td align="left">XP_044253031.1</td>
<td align="left">44.40</td>
</tr>
<tr>
<td align="left">
<italic>SIFamide neuropeptide</italic>
</td>
<td align="left">Csep012885</td>
<td align="left">71</td>
<td align="left">
<italic>Tribolium castaneum</italic>
</td>
<td align="left">1e-44</td>
<td align="left">XP_001814498.1</td>
<td align="left">67.69</td>
</tr>
<tr>
<td align="left">
<italic>Diuretic hormone 37 like protein</italic>
</td>
<td align="left">Csep030921</td>
<td align="left">137</td>
<td align="left">
<italic>Asbolus verrucosus</italic>
</td>
<td align="left">5e-19</td>
<td align="left">RZC31784.1</td>
<td align="left">35.97</td>
</tr>
<tr>
<td align="left">
<italic>Ion transport peptide</italic>
</td>
<td align="left">Csep013401</td>
<td align="left">124</td>
<td align="left">
<italic>Coccinella septempunctata</italic>
</td>
<td align="left">7e-87</td>
<td align="left">XP_044746445.1</td>
<td align="left">100</td>
</tr>
<tr>
<td align="left">
<italic>glycoprotein hormone alpha 2</italic>
</td>
<td align="left">Csep021738</td>
<td align="left">122</td>
<td align="left">
<italic>Tribolium castaneum</italic>
</td>
<td align="left">5e-64</td>
<td align="left">NP_001164244.1</td>
<td align="left">73.77</td>
</tr>
<tr>
<td align="left">
<italic>glycoprotein hormone beta-5</italic>
</td>
<td align="left">Csep024296</td>
<td align="left">154</td>
<td align="left">
<italic>Asbolus verrucosus</italic>
</td>
<td align="left">8e-74</td>
<td align="left">RZB89874.1</td>
<td align="left">85.83</td>
</tr>
<tr>
<td align="left">
<italic>Neuropeptide-like precursor</italic>
</td>
<td align="left">Csep035491</td>
<td align="left">306</td>
<td align="left">
<italic>Harmonia axyridis</italic>
</td>
<td align="left">8e-132</td>
<td align="left">XP_045477560.1</td>
<td align="left">76.40</td>
</tr>
<tr>
<td align="left">
<italic>Allatotropin I preprohormone precursor</italic>
</td>
<td align="left">Csep007712.1</td>
<td align="left">99</td>
<td align="left">
<italic>Tribolium castaneum</italic>
</td>
<td align="left">6e-13</td>
<td align="left">XP_008197028.1</td>
<td align="left">41.51</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Open Reading Frame.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T3" position="float">
<label>TABLE 3</label>
<caption>
<p>Neuropeptide receptors identified from <italic>C. septempunctata</italic>.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th rowspan="2" align="left">Gene name</th>
<th rowspan="2" align="left">Unigene ID</th>
<th align="left">ORF</th>
<th colspan="3" align="left">Homology search with known protein</th>
<th align="left"/>
</tr>
<tr>
<th align="center">(aa)</th>
<th align="left">Species</th>
<th align="left">E-value</th>
<th align="left">Accesion No.</th>
<th align="left">Identity (%)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">
<italic>Insulin-like receptor isoform X1</italic>
</td>
<td align="left">Csep018270</td>
<td align="left">1,437</td>
<td align="left">
<italic>Coccinella septempunctata</italic>
</td>
<td align="left">0.0</td>
<td align="left">XP_044766311.1</td>
<td align="left">100</td>
</tr>
<tr>
<td align="left">
<italic>Insulin-like peptide receptor 2</italic>
</td>
<td align="left">Csep040401</td>
<td align="left">1,107</td>
<td align="left">
<italic>Coccinella septempunctata</italic>
</td>
<td align="left">0.0</td>
<td align="left">XP_044749880.1</td>
<td align="left">100</td>
</tr>
<tr>
<td align="left">
<italic>Neuropeptides capa receptor</italic>
</td>
<td align="left">Csep006452</td>
<td align="left">644</td>
<td align="left">
<italic>Coccinella septempunctata</italic>
</td>
<td align="left">0.0</td>
<td align="left">XP_044764663.1</td>
<td align="left">100</td>
</tr>
<tr>
<td align="left">
<italic>neuropeptide SIFamide receptor</italic>
</td>
<td align="left">Csep000244</td>
<td align="left">274</td>
<td align="left">
<italic>Coccinella septempunctata</italic>
</td>
<td align="left">0.0</td>
<td align="left">XP_044757383.1</td>
<td align="left">97.67</td>
</tr>
<tr>
<td align="left">
<italic>Diuretic hormone receptor</italic>
</td>
<td align="left">Csep024929.1</td>
<td align="left">440</td>
<td align="left">
<italic>Harmonia axyridis</italic>
</td>
<td align="left">0.0</td>
<td align="left">XP_045474415.1</td>
<td align="left">81.35</td>
</tr>
<tr>
<td align="left">
<italic>CCHamide-1 receptor</italic>
</td>
<td align="left">Csep037149</td>
<td align="left">420</td>
<td align="left">
<italic>Coccinella septempunctata</italic>
</td>
<td align="left">0.0</td>
<td align="left">XP_044759703.1</td>
<td align="left">100</td>
</tr>
<tr>
<td align="left">
<italic>CCHamide-2 receptor</italic>
</td>
<td align="left">Csep035103</td>
<td align="left">418</td>
<td align="left">
<italic>Coccinella septempunctata</italic>
</td>
<td align="left">0.0</td>
<td align="left">XP_044758875.1</td>
<td align="left">100</td>
</tr>
<tr>
<td align="left">
<italic>Trissin receptor2</italic>
</td>
<td align="left">Csep032989.1</td>
<td align="left">169</td>
<td align="left">
<italic>Harmonia axyridis</italic>
</td>
<td align="left">0.0</td>
<td align="left">XP_044750262.1</td>
<td align="left">100</td>
</tr>
<tr>
<td align="left">
<italic>RYamide receptor 1</italic>
</td>
<td align="left">Csep002267.1</td>
<td align="left">193</td>
<td align="left">
<italic>Harmonia axyridis</italic>
</td>
<td align="left">2e-107</td>
<td align="left">XP_045468643.1</td>
<td align="left">81.96</td>
</tr>
<tr>
<td align="left">
<italic>RYamide receptor 2</italic>
</td>
<td align="left">Csep002854.1</td>
<td align="left">233</td>
<td align="left">
<italic>Harmonia axyridis</italic>
</td>
<td align="left">1e-92</td>
<td align="left">XP_045468643.1</td>
<td align="left">73.89</td>
</tr>
<tr>
<td align="left">
<italic>Sex peptide receptor 1</italic>
</td>
<td align="left">Csep009323.1</td>
<td align="left">1,023</td>
<td align="left">
<italic>Harmonia axyridis</italic>
</td>
<td align="left">0.0</td>
<td align="left">XP_045464657.1</td>
<td align="left">91.47</td>
</tr>
<tr>
<td align="left">
<italic>Tachykinin-like peptides receptor</italic>
</td>
<td align="left">Csep027247</td>
<td align="left">191</td>
<td align="left">
<italic>Coccinella septempunctata</italic>
</td>
<td align="left">7e-30</td>
<td align="left">XP_044762535.1</td>
<td align="left">98.31</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>ORF: open reading frame.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3-3">
<title>3.3 Phylogenetic analyses</title>
<p>Neuropeptide and neuropeptide receptor sequences of <italic>C. septempunctata</italic> were respectively used to construct maximum likelihood phylogenetic trees with 68 published neuropeptide sequences and 50 published neuropeptide receptor sequences from coleoptera, diptera and homoptera (illustrated in <xref ref-type="fig" rid="F1">Figures 1</xref>, <xref ref-type="fig" rid="F2">2</xref>). Among all neuropeptides, sNPF, FMRF, PBAN, Tachykinin, PTTH, AKH, CAAP, SIFamide, DH, ITP and Bursicon were clustered together with the orthologs from other coleoptera insects in the same clade. And the neuropeptide receptor is also in a similar situation.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Phylogenetic tree of neuropeptides from <italic>C. septempunctata</italic> and other insects. The <italic>C. septempunctata</italic> neuropeptides are highlighted in blue color, accession numbers are given in <xref ref-type="sec" rid="s12">Supplementary Table S1</xref>. The tree was conducted with MEGA v.11, using the Maximum-Likelihood method and the bootstrap analysis with 1,000 replicates.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g001.tif"/>
</fig>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Phylogenetic tree of neuropeptide receptors from <italic>C. septempunctata</italic> and other insects. The <italic>C. septempunctata</italic> neuropeptide receptors are highlighted in blue color, accession numbers are given in <xref ref-type="sec" rid="s12">Supplementary Table S2</xref>. The tree was conducted with MEGA v.11, using the Maximum-Likelihood method and the bootstrap analysis with 1,000 replicates.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g002.tif"/>
</fig>
</sec>
<sec id="s3-4">
<title>3.4 Multiple sequence alignment analysis of partial neuropeptides and prediction of mature neuropeptides</title>
<p>By aligning neuropeptides protein sequence with orthologs from different insect species, The signal peptides, mature peptides and conserved motifs were respectively found in sNPF (<xref ref-type="fig" rid="F3">Figure 3</xref>), NPF (<xref ref-type="fig" rid="F4">Figure 4</xref>), FMRFamide (<xref ref-type="fig" rid="F5">Figure 5</xref>), AKH (<xref ref-type="fig" rid="F6">Figure 6</xref>), SIFa (<xref ref-type="fig" rid="F7">Figure 7</xref>), Tachykinin (<xref ref-type="fig" rid="F8">Figure 8</xref>), CCAP (<xref ref-type="fig" rid="F9">Figure 9</xref>) and ITP (<xref ref-type="fig" rid="F10">Figure 10</xref>). Unlike other insects, the C-terminal motif of <italic>C. septempunctata</italic> NPF mature peptide is&#x201d;RPRYamide&#x201d;.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>The amino acid sequence alignment of sNPF in <italic>C. septempunctata</italic> <bold>(A)</bold> and other insects and predicted structures of neuropeptide precursors <bold>(B)</bold>. The conservative motif &#x201c;FLRFamide&#x201d; is labeled with stars. The signal peptide region is underlined; The area marked with red is the mature peptide region; The putative glycine-derived C-terminal amidation sites in blue; The cleavage site marked with green. Gene Accesion No.: C. s<italic>eptempunctata</italic>:this study, <italic>Harmonia axyridis</italic>: XP_045470701.1, <italic>Tribolium castaneum</italic>: XP_008198705.1, <italic>Culex quinquefasciatus</italic>: EDS32331.1, <italic>Nilaparvata lugens</italic>: XP_022184541.1.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g003.tif"/>
</fig>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>The amino acid sequence alignment of NPF in <italic>C. septempunctata</italic> <bold>(A)</bold> and other insects and predicted mature peptide structure <bold>(B)</bold>. The conservative motif&#x201d;RPRF/Yamide&#x201d; is labeled with stars. The signal peptide region is underlined; The area marked with red is the mature peptide region; The putative glycine-derived C-terminal amidation sites in blue; The cleavage site is marked with green.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g004.tif"/>
</fig>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>The amino acid sequence alignment of FMRFamide in <italic>C. septempunctata</italic> and other insects <bold>(A)</bold> and predicted mature peptide structure <bold>(B)</bold>. The conservative motif &#x201c;FLRFamide&#x201d; are labeled with triangles. The signal peptide region is underlined; The area marked with red is the mature peptide region; The putative glycine-derived C-terminal amidation sites in blue; The cleavage site is marked with green. Gene Accesion No.: <italic>C.</italic> sep<italic>tempunctata:</italic> this study, <italic>Aethina tumida</italic>: XP_019869081.1, <italic>Tribolium castaneum</italic>: XP_008191572.1, <italic>Tribolium madens</italic>: XP_044254202.1, <italic>Anoplophora glabripennis</italic>: XP_023310731.1.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g005.tif"/>
</fig>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>The amino acid sequence alignment of AKH in <italic>C. septempunctata</italic> and other insects <bold>(A)</bold> and predicted mature peptide structure <bold>(B)</bold>The conservative motif &#x201c;QX<sub>6</sub>W&#x201d; are labeled with triangles. The signal peptide region is underlined; The phosphorylation sites is highlighted in yellow; The area marked with red is the mature peptide region; shaded in blue is the amide site, The area marked with green is the cleavage site. Gene Accesion No.: <italic>C. septempunctata:</italic>this study, <italic>Coptotermes formosanus</italic>: AML80822.1, <italic>Coptotermes gestroi</italic>: AML80828.1, <italic>Nasutitermes takasagoensis</italic>: AML80829.1, <italic>Zootermopsis nevadensis</italic>: AML80834.1, <italic>Nilaparvata lugens</italic>: AFN26934.1, <italic>Neotermes castaneus</italic>: AML80825.1, <italic>Asbolus verrucosus</italic>: RZB41086.1, <italic>Tribolium castaneum</italic>: NP_001107818.1, <italic>Tenebrio molitor</italic>: UXO98184.1.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g006.tif"/>
</fig>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>The amino acid sequence alignment of SIFa in <italic>C. septempunctata</italic> and other insects <bold>(A)</bold> and predicted mature peptide structure <bold>(B)</bold>. The conservative motif &#x201c;XYRKPPFNGSIF&#x201d; are labeled with triangles. The signal peptide region is underlined; The sulfation of tyrosine residues is highlighted in yellow; The area marked with red is the mature peptide region; shaded in blue is the amide site, The area marked with green is the cleavage site. Gene Accesion No.: C<italic>. septempunctata:</italic>this study, <italic>Harmonia axyridis</italic>: XP_045483513.1, <italic>Tribolium madens</italic>: XP_044265653.1, <italic>Aethina tumida</italic>: XP_019881334.1, <italic>Nicrophorus vespilloides</italic>: XP_017769590.1, <italic>Anoplophora glabripennis</italic>: XP_018576888.1, <italic>Stomoxys calcitrans</italic>: XP_013114449.1.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g007.tif"/>
</fig>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption>
<p>The amino acid sequence alignment of Tachykinin in <italic>C. septempunctata</italic> and other insects <bold>(A)</bold> and predicted mature peptide structure <bold>(B)</bold>. Note: The conservative motif &#x201c;FXGXR&#x201d; are labeled with triangles. The signal peptide region is underlined; The area marked with red is the mature peptide region; shaded in blue is the amide site, The area marked with green is the cleavage site. Gene Accesion No.: C. <italic>septempunctata:</italic>this study, <italic>Harmonia axyridis</italic>: XP_045478364.1, <italic>Tribolium castaneum</italic>: KYB25860.1, <italic>Dendroctonus ponderosae</italic>: XP_019770548.1, <italic>Tribolium madens</italic>: XP_044272560.1. <italic>Aethina tumida</italic>: XP_019880636.2, <italic>Anthonomus grandis</italic>: XP_050299773.1.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g008.tif"/>
</fig>
<fig id="F9" position="float">
<label>FIGURE 9</label>
<caption>
<p>The amino acid sequence alignment of CCAP in <italic>C. septempunctata</italic> and other insects <bold>(A)</bold> and predicted mature peptide structure <bold>(B)</bold>. Note: The conservative motif &#x201c;PFCNAFTGCamide&#x201d; is labeled with triangles. The signal peptide region is underlined; The area marked with red is the mature peptide region; shaded in blue is the amide site, The area marked with green is the cleavage site. Gene Accesion No.: C<italic>. septempunctata:</italic>this study, <italic>Diorhabda sublineata</italic>: XP_056637896.1, <italic>Diabrotica virgifera</italic>: XP_028132314.1, <italic>Anoplophora glabripennis</italic>: XP_018571850.1, <italic>Anthonomus grandis</italic>: XP_050299286.1, <italic>Aethina tumida</italic>: XP_019874422.1, <italic>Dendroctonus ponderosae</italic>: XP_019766469.1, <italic>Sitophilus oryzae</italic> XP_030753057.1, <italic>Leptinotarsa decemlineata</italic>: XP_023012719.1, <italic>Cylas formicarius</italic>: XP_060524530.1, <italic>Tribolium madens</italic>: XP_044258689.1.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g009.tif"/>
</fig>
<fig id="F10" position="float">
<label>FIGURE 10</label>
<caption>
<p>The amino acid sequence alignment of ITP in <italic>C. septempunctata</italic> and other insects <bold>(A)</bold> and predicted mature peptide structure <bold>(B)</bold>. The conservative motif &#x201c;IKXLHGAXP&#x201d; are labeled with triangles. The area marked with red is the mature peptide region; shaded in blue is the amide site, The area marked with green is the cleavage site. Gene Accesion No.: C<italic>. septempunctata:</italic>this study, <italic>Harmonia axyridis</italic>: XP_045478547.1, <italic>Asbolus verrucosus</italic>: RZC33292.1: <italic>Anoplophora glabripennis</italic>: XP_018574385.1, <italic>Tribolium castaneum</italic>: XP_008195066.1, <italic>Tribolium madens</italic>: XP_044263512.1, <italic>Aethina tumida</italic>: XP_019869750.1.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g010.tif"/>
</fig>
</sec>
<sec id="s3-5">
<title>3.5 Times and tissues expression profile of <italic>C. septempunctata</italic> neuropeptides precursor under diapause inducing condition and normal developmental condition</title>
<p>The overall relative expression profiles of 6 neuropeptides precursor of <italic>C. septempunctata</italic> in different tissues (head, thorax, fat body, ovary and midgut) of female adults under different inducing conditions were analyzed using RT-qPCR (<xref ref-type="fig" rid="F11">Figures 11</xref>, <xref ref-type="fig" rid="F12">12</xref>). Under diapause-inducing conditions, neuropeptides precursor <italic>FRMF</italic>, <italic>GPHA</italic>, <italic>AKH</italic>, and <italic>PTTH</italic> exhibited significantly higher expression levels in the head compared to other tissues. <italic>NPF</italic> was predominantly expressed in the midgut of <italic>C. septempunctata</italic> under diapause inducing condition (<xref ref-type="fig" rid="F11">Figure 11</xref>). Under normal developmental condition, <italic>AKH</italic> and <italic>GPHA</italic> showed predominant expression in the head, while <italic>NPF</italic> was highly expressed in the midgut. <italic>FRMF</italic> displayed predominant expression in both the head and midgut (<xref ref-type="fig" rid="F12">Figure 12</xref>). During diapause induction, the mRNA abundance of <italic>AKH</italic> was notably higher on the 10th day compared to non-diapause females, but decreased by the 20th day. In contrast, <italic>GPHA</italic> showed lower expression levels on the 5th day of diapause induction compared to non-diapause females, but increased significantly by the 15th and 20th days. Interestingly, throughout the diapause induction stages, <italic>NPF</italic> consistently showed lower expression levels compared to non-diapause females (<xref ref-type="fig" rid="F13">Figure 13</xref>).</p>
<fig id="F11" position="float">
<label>FIGURE 11</label>
<caption>
<p>Tissue expression of neuropeptides precursor gene in <italic>C. septempunctata</italic> under the diapause inducing condition. The transcript level was measured via qRT-PCR and normalized against <italic>Actin</italic> gene. Data are presented as the Mean &#xb1; SE. The data were statistically analyzed by one-way ANOVA followed by Tukey&#x2019;s HSD. The letters &#x201c;a&#x201d;, &#x201c;b&#x201d; and &#x201c;c&#x201d;indicate significant difference at the 0.05 level.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g011.tif"/>
</fig>
<fig id="F12" position="float">
<label>FIGURE 12</label>
<caption>
<p>Tissue expression of neuropeptides precursor in <italic>C. septempunctata</italic> under the normal developmental condition. The transcript level was measured via qRT-PCR and normalized against <italic>Actin</italic> gene. Data are presented as the Mean &#xb1; SE. The data were statistically analyzed by one-way ANOVA followed by Tukey&#x2019;s HSD. The letters &#x201c;a&#x201d;, &#x201c;b&#x201d; and &#x201c;c&#x201d;indicate significant difference at the 0.05 level.</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g012.tif"/>
</fig>
<fig id="F13" position="float">
<label>FIGURE 13</label>
<caption>
<p>Time expressions of partial neuropeptides precursor in <italic>C. septempunctata</italic> under diapause/non-diapause condition. The mRNA expression levels of <italic>AKH</italic> gene and <italic>GPHA</italic> gene in head and <italic>NPF</italic> gene in midgut were measured at various time points, and data are presented as Mean &#xb1; SE of triplicate biological replicates. Asterisk and &#x201c;ns&#x201d; indicate significant differences (<italic>t</italic>-test; &#x2a;<italic>p</italic> &#x3c; 0.05, &#x2a;&#x2a;<italic>p</italic> &#x3c; 0.01, &#x2a;&#x2a;&#x2a;/&#x2a;&#x2a;&#x2a;&#x2a;<italic>p</italic> &#x3c; 0.001).</p>
</caption>
<graphic xlink:href="fphys-15-1464989-g013.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>4 Discussion</title>
<p>Transcriptome sequencing is fundamental to dentification of genes, and identification of neuropeptides and their receptors is the first and foremost step of deep function depth studies in physiological processes. However, detailed information on neuropeptide types and expression in <italic>C. septempunctata</italic> remains scarce. Therefore, to address this problem, we performed mRNA sequencing analysis of the head in <italic>C. septempunctata</italic>.</p>
<p>Based on transcriptome analysis, we identified 17 neuropeptides precursor and 12 receptor transcripts encoding 9 neuropeptide receptors from <italic>C. septempunctata</italic> in this study. The confirmation of these receptor information still requires a lot of work, such as pharmacological characterization was determined with all possible neuropeptides of similar motifs. Most neuropeptide receptors belong to the G protein-coupled receptor family. However, we have noticed that insulin-like receptor isoform XI and insulin-like receptor are not GPCRs but tyrosine kinase receptors (TKR), which includes catalytic domain of insulin receptor-like protein tyrosine kinases, furin-like cysteine rich region, receptor l domain and fibronectin type domain (<xref ref-type="bibr" rid="B8">Choi and Bai, 2023</xref>). For some neuropeptide signaling systems, <italic>C. septempunctata</italic> seems to lack both receptor and neuropeptide precursor, such as SK, Crz, Trissin, Ast and Elevenin. For others, the neuropeptide precursor was not found or is lacking, but its presumed receptor is present (e.g., PDF, ILP, CNMa, etc.). There are several factors that may account for the difference in the number of identified genes of specific functions which has been discussed (<xref ref-type="bibr" rid="B42">Wang et al., 2015</xref>; <xref ref-type="bibr" rid="B12">Huang et al., 2021</xref>; <xref ref-type="bibr" rid="B22">Li X. et al., 2020</xref>). Firstly, the head used as the sequenced samples did not cover complete the individual and all stages of life cycle of <italic>C. septempunctata</italic> and some genes may not have been expressed in these measured samples. Secondly, some genes are expressed at low levels in head tissue making it challenging to detect their expression quantitatively or they may not be expressed at all in the sampled conditions. Thirdly, due to the lack of strong sequence conservation among some neuropeptide precursors or neuropeptide receptors, their clear orthologs could not be found in <italic>C. septempunctata</italic> based on homology searches. Lastly, some neuropeptides may indeed be absent in <italic>C. septempunctata</italic>, a phenomenon observed in various insects. For instance, sex peptide was reported only in the <italic>Drosophila genus</italic>, while neuroparsin is missing in <italic>Drosophila melanogaster</italic> and other <italic>Drosophila</italic> species (<xref ref-type="bibr" rid="B40">Veenstra, 2010</xref>).</p>
<p>Generally, neuropeptide precursor undergoes alternative splicing, regulated cleavages and post-translational to produce functionally active mature neuropeptides (<xref ref-type="bibr" rid="B2">Agrawal et al., 2019</xref>; <xref ref-type="bibr" rid="B9">Christie, 2017</xref>). Multiple sequence alignment of NPF precursors between the <italic>C. septempunctata</italic> and other insects revealed a conserved C-terminal sequence-RPRYamide. The invertebrate NPF is considered to be a superfamily of NPY in which an amidated tyrosine (Y) residue is replaced with an amidated phenylalanine (F) residue at its C-terminal end (<xref ref-type="bibr" rid="B10">Cui and Zhao, 2020</xref>). In insects, most NPFs are consisted of 36&#x2013;40 amino acids and the sequence of amino acids at C-terminal end is relatively conservative with RPRFamide, which is important to maintain functional activity of NPFs. According to the different C-terminus, insect NPFs can be divided into the following type: the general structure of NPFs is RPRFa, which accounts for more than 80% of known insect NPFs (except <italic>drosophila melanogaster</italic> NPF: RVRFa (<xref ref-type="bibr" rid="B6">Brown et al., 1999</xref>)); Additionally, a unique structure, RGRYa (often GRxRYa or Gx1x2RYa, NPF2 or NPY), has been identified exclusively in Lepidoptera insects with some species exhibiting both RPRFa and RGRYa structures (<xref ref-type="bibr" rid="B43">Wang et al., 2021</xref>; <xref ref-type="bibr" rid="B21">Li et al., 2023</xref>); Furthermore, a distinct structure known as KARYa has been found only in Hymenoptera insects, such as <italic>A. mellifera</italic> NPF (<xref ref-type="bibr" rid="B13">Hummon et al., 2006</xref>).</p>
<p>NPFs are widely distributed in brain neurons of larvae and adults, as well as the foregut, midgut, and hindgut in most insects (<xref ref-type="bibr" rid="B43">Wang et al., 2021</xref>; <xref ref-type="bibr" rid="B21">Li et al., 2023</xref>; <xref ref-type="bibr" rid="B15">Johard et al., 2008</xref>; <xref ref-type="bibr" rid="B25">Liu et al., 2013</xref>; <xref ref-type="bibr" rid="B28">N&#xe4;ssel et al., 2008</xref>; <xref ref-type="bibr" rid="B48">Yue et al., 2016</xref>). NPF peptides are a group of multifunctional peptides and exert multi-actions in insects. The differential distribution of NPF across various tissues and cells suggests a close relationship between its location and function. For instance, NPF expression in the midgut correlates with feeding behavior, while its expression in the brain (clock neurons, mushroom body) relates to daily circadian rhythm and sleep (<xref ref-type="bibr" rid="B10">Cui and Zhao, 2020</xref>). In our study, we observed predominant expression of NPF in the head and midgut, with lower levels in the thorax and fat body of female <italic>C. septempunctata</italic> adults. Interestingly, throughout the entire stage of diapause induction, <italic>NPF</italic> expression levels were consistently lower compared to females under non-diapause conditions. In our previous research, we noted that female <italic>C. septempunctata</italic> exhibit suppressed ovaries and accumulate lipids during prolonged diapause periods, often accompanied by reduced or no feeding (<xref ref-type="bibr" rid="B20">Li FF. et al., 2020</xref>; <xref ref-type="bibr" rid="B7">Chen et al., 2023</xref>). Given the multifaceted roles of <italic>NPF</italic> in insects and its expression profile in <italic>C. septempunctata</italic>, we plan to conduct further investigations into the functions of <italic>NPF</italic> genes during diapause.</p>
<p>The prothoracicotropic hormone (PTTH) is a brain neurosecretory peptide of insects that stimulates the prothoracic glands (PGs) to secrete ecdysteroid, thereby inducing molting and metamorphosis (<xref ref-type="bibr" rid="B27">Mizoguchi, 2001</xref>). It is widely accepted that PTTH is released at specific times during insect development, such as larval molting, larval&#x2013;pupal transformation and adult development. In addition, Some studies indicate that JH regulates the brain to produce and/or release PTTH. In lepidopterans, JH blocked the PTTH secretion activity of the brain&#x2013;corpora cardiaca&#x2013;corpora allata complex (Br&#x2013;CC&#x2013;CA) of JHA-treated larvae, thereby indirectly inhibiting the secretion of ecdysteroid that induces the larval&#x2013;pupal transformation (<xref ref-type="bibr" rid="B33">Rountree and Bollenbacher, 1986</xref>; <xref ref-type="bibr" rid="B45">Watson et al., 1987</xref>). Our previous research found that the absence of the juvenile hormone (JH) which resulted from the upregulation of two JH degradation genes (<italic>CsJHE</italic>, <italic>CsJHEH</italic>), is a critical factor during reproductive diapause in <italic>C. septempunctata</italic> (<xref ref-type="bibr" rid="B23">Li et al., 2022</xref>). It is unknown whether JH regulates the PTTH of <italic>C.septenunctata</italic> females. Further in-depth research is needed to determine whether PTTH is involved in regulating the reproductive diapause of <italic>C. septempunctata</italic> females. Pupal diapause of lepidoptera insects is regulated by the major developmental hormones prothoracicotropic hormone (PTTH) and ecdysone, such as <italic>Scrobipalpa ocellatella</italic> (<xref ref-type="bibr" rid="B3">Ahmadi et al., 2021</xref>), <italic>Pieris napi</italic> (<xref ref-type="bibr" rid="B37">S&#xfc;ess et al., 2022</xref>) and <italic>Helicoverpa armigera</italic> (<xref ref-type="bibr" rid="B46">Wei et al., 2005</xref>). There is currently no research on the regulation of diapause by PTTH in coleoptera insects.</p>
<p>Adipokinetic hormone (AKH) produced by the corpora cardiaca is involved in innutrient and energy metabolism, maintaining lipid, carbohydrate levels and female reproduction in insect (<xref ref-type="bibr" rid="B46">Wei et al., 2005</xref>; <xref ref-type="bibr" rid="B18">Lee and Park, 2004</xref>; <xref ref-type="bibr" rid="B5">Bharucha et al., 2008</xref>). In <italic>D. melanogaster</italic>, decreased AKH reduces trehalose content in hemolymph, glucose homeostasis and low energy metabolism (<xref ref-type="bibr" rid="B18">Lee and Park, 2004</xref>; <xref ref-type="bibr" rid="B16">Kim and Rulifson, 2004</xref>; <xref ref-type="bibr" rid="B14">Isabel et al., 2005</xref>). In <italic>B. mori</italic>, injection of AKH maturation peptide increases carbohydrate content and lipid levels in hemolymph (<xref ref-type="bibr" rid="B35">Sehadova et al., 2020</xref>). Knockdown AKHR suppresses the mobilization of triacylglycerol and trehalose, reduces <italic>vitellogenin</italic> expression in the fat body, and delays oocyte development in migratory locusts (<xref ref-type="bibr" rid="B49">Zheng et al., 2020</xref>). In <italic>Bactrocera dorsalis</italic>, AKHR silencing causes triglyceride (TG) accumulation and affects courtship activity and fecundity (<xref ref-type="bibr" rid="B11">Hou et al., 2017</xref>). In our previous research, <italic>CsAKH</italic> and <italic>CsAKHR</italic> are involved in the regulation of lipid accumulation and ovarian development during diapause in <italic>C. septempunctata</italic> (<xref ref-type="bibr" rid="B36">Shen et al., 2024</xref>).</p>
<p>In addition, for the identified neuropeptides and neuropeptide receptors, we conducted evolutionary tree analysis and multiple sequence alignment. Amino acid sequence alignment results showed that CAPA receptor and SP receptor in <italic>C. septempunctata</italic> respectively had a much longer sequence than their closely related species (<xref ref-type="sec" rid="s12">Supplementary Figures S8 and S9</xref>); SIFamide receptor in <italic>C. septempunctata</italic> had a shorter sequence than its closely related species (<xref ref-type="sec" rid="s12">Supplementary Figure S3</xref>). In addition, <xref ref-type="sec" rid="s12">Supplementary Figure S2</xref> showed that tachykinin receptor in <italic>Harmonia axyridis</italic> had a longer sequence than its closely related species. We infered that this may be caused by alternative splicing. Due to selection pressure or optimization of gene expression, the alternative splicing of precursor mRNA leads to additional exon insertion or intron retention, resulting in the production of various mature mRNA molecules (<xref ref-type="bibr" rid="B17">Koch, 2017</xref>). These different mRNA have distinct functional or structural features. So, genes of certain species may have shorter or longer mRNA sequences than homologous genes of other species.</p>
</sec>
<sec sec-type="conclusion" id="s5">
<title>5 Conclusion</title>
<p>In conclusion, our study employed transcriptome sequencing to identify a comprehensive panel of 17 neuropeptides precursor and 9 neuropeptide receptors genes from the adult head of <italic>C. septempunctata</italic>. This initial exploration provides a foundational understanding of these genes&#x2019; functions. We conducted phylogenetic analyses with sequences of other insect species and examined their gene expression profiles in different tissues including the head, thorax, fat body, ovary and midgut in female. These findings suggest their potential roles in the development and diapause of <italic>C. septempunctata</italic>. Overall, our research contributes valuable insights into neuropeptides precursor and neuropeptide receptor genes in insect diapause, advancing our understanding and potentially facilitating the mass production and storage of <italic>C. septempunctata</italic>.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s6">
<title>Data availability statement</title>
<p>The data presented in the study are deposited in the NCBI repository: <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/">https://www.ncbi.nlm.nih.gov/</ext-link>, accession number PRJNA1154946.</p>
</sec>
<sec id="s7">
<title>Ethics statement</title>
<p>The requirement of ethical approval was waived by Institute of Plant Protection, Chinese Academy of Agricultural Sciences review board for the studies involving animals because the manuscript (Identification and expression profiling of neuropeptides and neuropeptide receptor genes in a natural enemy, <italic>Coccinella septempunctata</italic> presents research on an insect that do not require ethical approval for their study. The studies were conducted in accordance with the local legislation and institutional requirements.</p>
</sec>
<sec id="s8">
<title>Author contributions</title>
<p>SH: Writing&#x2013;original draft, Writing&#x2013;review and editing, Investigation. JC: Writing&#x2013;original draft, Writing&#x2013;review and editing, Conceptualization, Investigation. ZL: Writing&#x2013;review and editing, Methodology, Project administration. MZ: Writing&#x2013;review and editing, Resources, Visualization. PG: Writing&#x2013;review and editing. XL: Formal Analysis, Writing&#x2013;review and editing. LW: Writing&#x2013;review and editing. ZS: Writing&#x2013;review and editing. LZ: Writing&#x2013;review and editing, Funding acquisition, Writing&#x2013;original draft.</p>
</sec>
<sec sec-type="funding-information" id="s9">
<title>Funding</title>
<p>The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This research was supported by grants from the by the National Key R&#x26;D Program of China (2023YFE0123000, 2023YFD1400600), the Science and Technology Innovation Program of Chinese Academy of Agricultural Sciences (CAAS-ZDRW202203), and Major Projects of China National Tobacco Corporation (110202201022 (LS-06). The funders were not involved in the study design, collection, analysis, interpretation of data, the writing of this article, or the decision to submit it for publication.</p>
</sec>
<sec sec-type="COI-statement" id="s10">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s11">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s12">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fphys.2024.1464989/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fphys.2024.1464989/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Table1.DOCX" id="SM1" mimetype="application/DOCX" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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