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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Physiol.</journal-id>
<journal-title>Frontiers in Physiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Physiol.</abbrev-journal-title>
<issn pub-type="epub">1664-042X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1118706</article-id>
<article-id pub-id-type="doi">10.3389/fphys.2023.1118706</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Physiology</subject>
<subj-group>
<subject>Mini Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Structure-function relationships in the sodium chloride cotransporter</article-title>
<alt-title alt-title-type="left-running-head">Moreno et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fphys.2023.1118706">10.3389/fphys.2023.1118706</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Moreno</surname>
<given-names>Erika</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="fn" rid="fn1">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2131347/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Pacheco-Alvarez</surname>
<given-names>Diana</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="fn" rid="fn1">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2185096/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ch&#xe1;vez-Canales</surname>
<given-names>Mar&#xed;a</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1107744/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Elizalde</surname>
<given-names>Stephanie</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1821110/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Leyva-R&#xed;os</surname>
<given-names>Karla</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2179325/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Gamba</surname>
<given-names>Gerardo</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Nephrology and Mineral Metabolism</institution>, <institution>Instituto Nacional de Ciencias M&#xe9;dicas y Nutrici&#xf3;n Salvador Zubir&#xe1;n</institution>, <addr-line>Mexico City</addr-line>, <country>Mexico</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Escuela de Medicina</institution>, <institution>Universidad Panamericana</institution>, <addr-line>Mexico City</addr-line>, <country>Mexico</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Unidad de Investigaci&#xf3;n UNAM-INC</institution>, <institution>Instituto Nacional de Cardiolog&#xED;a Ignacio Ch&#xE1;vez and Instituto de Investigaciones Biom&#xE9;dicas</institution>, <institution>Universidad Nacional Aut&#xf3;noma de M&#xe9;xico</institution>, <addr-line>Mexico City</addr-line>, <country>Mexico</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Molecular Phisiology Unit</institution>, <institution>Instituto de Investigaciones Biom&#xe9;dicas</institution>, <institution>Universidad Nacional Aut&#xf3;noma de M&#xe9;xico</institution>, <addr-line>Mexico City</addr-line>, <country>Mexico</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/34487/overview">Robert A. Fenton</ext-link>, Aarhus University, Denmark</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/191823/overview">Anna-Maria Hartmann</ext-link>, University of Oldenburg, Germany</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Gerardo Gamba, <email>gamba@iibiomedicas.unam.mx</email>
</corresp>
<fn fn-type="equal" id="fn1">
<label>
<sup>&#x2020;</sup>
</label>
<p>These authors have contributed equally to this work</p>
</fn>
<fn fn-type="other">
<p>This article was submitted to Renal Physiology and Pathophysiology, a section of the journal Frontiers in Physiology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>14</day>
<month>03</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1118706</elocation-id>
<history>
<date date-type="received">
<day>07</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>27</day>
<month>02</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Moreno, Pacheco-Alvarez, Ch&#xe1;vez-Canales, Elizalde, Leyva-R&#xed;os and Gamba.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Moreno, Pacheco-Alvarez, Ch&#xe1;vez-Canales, Elizalde, Leyva-R&#xed;os and Gamba</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The thiazide sensitive Na<sup>&#x2b;</sup>:Cl<sup>&#x2212;</sup> cotransporter (NCC) is the principal <italic>via</italic> for salt reabsorption in the apical membrane of the distal convoluted tubule (DCT) in mammals and plays a fundamental role in managing blood pressure. The cotransporter is targeted by thiazide diuretics, a highly prescribed medication that is effective in treating arterial hypertension and edema. NCC was the first member of the electroneutral cation-coupled chloride cotransporter family to be identified at a molecular level. It was cloned from the urinary bladder of the <italic>Pseudopleuronectes americanus</italic> (winter flounder) 30&#xa0;years ago. The structural topology, kinetic and pharmacology properties of NCC have been extensively studied, determining that the transmembrane domain (TM) coordinates ion and thiazide binding. Functional and mutational studies have discovered residues involved in the phosphorylation and glycosylation of NCC, particularly on the N-terminal domain, as well as the extracellular loop connected to TM7-8 (EL7-8). In the last decade, single-particle cryogenic electron microscopy (cryo-EM) has permitted the visualization of structures at high atomic resolution for six members of the SLC12 family (NCC, NKCC1, KCC1-KCC4). Cryo-EM insights of NCC confirm an inverted conformation of the TM1-5 and TM6-10 regions, a characteristic also found in the amino acid-polyamine-organocation (APC) superfamily, in which TM1 and TM6 clearly coordinate ion binding. The high-resolution structure also displays two glycosylation sites (N-406 and N-426) in EL7-8 that are essential for NCC expression and function. In this review, we briefly describe the studies related to the structure-function relationship of NCC, beginning with the first biochemical/functional studies up to the recent cryo-EM structure obtained, to acquire an overall view enriched with the structural and functional aspects of the cotransporter.</p>
</abstract>
<kwd-group>
<kwd>physiology</kwd>
<kwd>sodium transport</kwd>
<kwd>structure-function</kwd>
<kwd>thiazide</kwd>
<kwd>NCC</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>The thiazide sensitive Na<sup>&#x2b;</sup>:Cl<sup>&#x2212;</sup> cotransporter (NCC) is a membrane protein that belongs to the SLC12 family of cation-coupled chloride cotransporters and is localized in the apical membrane of the distal convoluted tubule of the nephron, constituting the main pathway for NaCl reabsorption (<xref ref-type="bibr" rid="B23">Gamba, 2005</xref>). In mammalian kidneys, NCC plays a significant role in the homeostasis of the Na<sup>&#x2b;</sup>, Cl<sup>&#x2212;</sup> and K<sup>&#x2b;</sup> ions; therefore, when changes in the activity of the cotransporter occurs, arterial blood pressure and K<sup>&#x2b;</sup> in plasma changes, resulting in diseases such as Gitelman syndrome (<xref ref-type="bibr" rid="B24">Gitelman et al., 1966</xref>; <xref ref-type="bibr" rid="B13">Cruz et al., 2001</xref>) and SeSAME syndrome (<xref ref-type="bibr" rid="B5">Bockenhauer et al., 2009</xref>; <xref ref-type="bibr" rid="B14">Cuevas et al., 2017</xref>), featuring low blood pressure and hypokalemia. Both illnesses produce arterial hypotension accompanied by hypokalemic metabolic alkalosis and hypercalcemia due to poor NCC activity; however, when elevated NCC activity occurs, it leads to the development of a sodium-dependent form of hypertension known as Familial Hyperkalemic Hypertension or Pseudohypoaldosteronism type II, this disease is caused by mutations in the WNK1 and WNK4 kinases (<xref ref-type="bibr" rid="B63">Wilson et al., 2001</xref>) or the KLHL3 and Cul3 ubiquitin ligase proteins (<xref ref-type="bibr" rid="B7">Boyden et al., 2012</xref>; <xref ref-type="bibr" rid="B33">Louis-Dit-Picard et al., 2012</xref>). Therapeutically, NCC is the site of action for thiazide diuretics, and the first line of treatment for arterial hypertension because of their effectiveness and safe use (<xref ref-type="bibr" rid="B62">Whelton et al., 2018</xref>). Due to the importance of this cotransporter in the physiology, pathophysiology, and pharmacology of the kidney, the structure-function relationship of this cotransporter has become a topic of interest for many research groups.</p>
</sec>
<sec id="s2">
<title>The thiazide sensitive Na-Cl cotransporter (NCC)</title>
<p>NCC belongs to the SLC12 family of cation-coupled chloride cotransporters (CCC) (<xref ref-type="fig" rid="F1">Figure 1A</xref>, (<xref ref-type="bibr" rid="B23">Gamba, 2005</xref>)). Seven members of this family are divided into two main groups, the Na<sup>&#x2b;</sup> -dependent cotransporter (NCC, NKCC1, NKCC2) and the Na<sup>&#x2b;</sup> independent cotransporters (KCC1, KCC2, KCC3 and KCC4). NKCC1 and NKCC2 translocate Na<sup>&#x2b;</sup>, K<sup>&#x2b;</sup>, Cl<sup>&#x2212;</sup> unidirectionally with a stoichiometry 1:1:2; meanwhile NCC transports only Na<sup>&#x2b;</sup> and Cl<sup>&#x2212;</sup>, in a 1:1 ratio (<xref ref-type="bibr" rid="B8">Brumback and Staley, 2008</xref>; <xref ref-type="bibr" rid="B69">Zhu et al., 2016</xref>)<italic>.</italic> The group of K<sup>&#x2b;</sup> coupled cotransporters translocate K<sup>&#x2b;</sup> and Cl<sup>&#x2212;</sup> with a stoichiometry 1:1 (<xref ref-type="bibr" rid="B9">Caron et al., 2000</xref>; <xref ref-type="bibr" rid="B28">Kakazu et al., 2000</xref>). NCC is expressed in the apical membrane of the distal convoluted tubule of the kidney and in bone osteoblasts (<xref ref-type="bibr" rid="B22">Gamba et al., 1994</xref>; <xref ref-type="bibr" rid="B19">Dvorak et al., 2007</xref>). NKCC2 is exclusively expressed in the apical membrane of the thick ascending loop of Henle in the kidney (<xref ref-type="bibr" rid="B22">Gamba et al., 1994</xref>). Furthermore, NKCC1 is present in many epithelial and non-epithelial cells (<xref ref-type="bibr" rid="B18">Delpire et al., 1994</xref>). Inside epithelial cells, it is expressed in the basolateral membrane, except for the choroid plexuses of the brain, where it is expressed in the apical membrane (<xref ref-type="bibr" rid="B18">Delpire et al., 1994</xref>; <xref ref-type="bibr" rid="B64">Wu et al., 1998</xref>). The degree of identity between these transporters is between 50% and 67% (<xref ref-type="fig" rid="F1">Figure 1A</xref>). The K-Cl branch is composed of four members known as KCC1 through KCC4. KCC2 is expressed in neurons throughout the central nervous system, retina, CA1-CA4 pyramidal cells of the hippocampus, granule cells, cardiomyocytes, glial cells and Purkinje cells (<xref ref-type="bibr" rid="B44">Payne et al., 1996</xref>; <xref ref-type="bibr" rid="B26">Hirosawa et al., 1999</xref>; <xref ref-type="bibr" rid="B57">Vu et al., 2000</xref>; <xref ref-type="bibr" rid="B1">Adragna et al., 2004</xref>; <xref ref-type="bibr" rid="B21">Gagnon et al., 2007</xref>; <xref ref-type="bibr" rid="B3">Antrobus et al., 2012</xref>), while the other 3&#xa0;KCCs are expressed in various cells throughout the body. The identity between the KCCs is &#x223c;60% and between the Na<sup>&#x2b;</sup> dependent and independent branches it decreases to 25% (<xref ref-type="bibr" rid="B23">Gamba, 2005</xref>; <xref ref-type="bibr" rid="B4">Arroyo et al., 2013</xref>) (<xref ref-type="fig" rid="F1">Figure 1A</xref>). The Na<sup>&#x2b;</sup> coupled cotransporters transfer ions from the extracellular space to the cytoplasm; meanwhile, the KCCs mediate the efflux of ions from the cells (<xref ref-type="bibr" rid="B23">Gamba, 2005</xref>). Lastly, two additional members of the family that were identified were CIP1 and CCC9; however, their function and substrate identity are not well defined (<xref ref-type="bibr" rid="B23">Gamba, 2005</xref>). At first, it was thought that these two cotransporters played a role in Na<sup>&#x2b;</sup> and K<sup>&#x2b;</sup> coupled Cl<sup>&#x2212;</sup> transport; however, a decrease in NKCC1 and NKCC2 function was observed when they were injected along with CIP1 in HEK-293 cells and <italic>X. laevis</italic> oocytes (<xref ref-type="bibr" rid="B9">Caron et al., 2000</xref>). Subsequently, through biochemical analyses, CIP1 was capable of activating KCC2 through heteromer formation (<xref ref-type="bibr" rid="B61">Wenz et al., 2009</xref>). On the other hand, CCC9 has been associated with both amino acid and polyamine transport (<xref ref-type="bibr" rid="B16">Daigle et al., 2009</xref>). Grozio <italic>et al.</italic>, (<xref ref-type="bibr" rid="B25">Grozio et al., 2019</xref>), recently proposed that CCC9 is a nicotinamide mononucleotide (NMN) transporter that is regulated by NAD&#x2b; (Nicotinamide adenine dinucleotide). Analysis made by <xref ref-type="bibr" rid="B50">Schmidt and Brenner (2019)</xref>, however, demonstrated the lack of methodological evidence that is needed to consider CIP1 as an NMN transporter, therefore, CCC9 should be considered a Na<sup>&#x2b;</sup> transporter instead. The first member of the CCC family identified at the molecular level was NCC. Gamba <italic>et al.</italic>, identified the cDNA from the urinary bladder of the winter flounder (flNCC) and later on from rat kidney (<xref ref-type="bibr" rid="B22">Gamba et al., 1994</xref>) (rNCC). NCC has been cloned from several species, including the hNCC (<xref ref-type="bibr" rid="B34">Mastroianni et al., 1996</xref>; <xref ref-type="bibr" rid="B51">Simon et al., 1996</xref>), mouse (mNCC) (<xref ref-type="bibr" rid="B29">Kunchaparty et al., 1999</xref>), rabbit (rbNCC) (<xref ref-type="bibr" rid="B55">Vel&#xe1;zquez et al., 1998</xref>), zebrafish (zfNCC) (<xref ref-type="bibr" rid="B58">Wang et al., 2009</xref>), shark (sNCC) (<xref ref-type="bibr" rid="B37">Moreno et al., 2019</xref>), Japanese and European eels (jNCC and eNCC) (<xref ref-type="bibr" rid="B15">Cutler and Cramb, 2008</xref>; <xref ref-type="bibr" rid="B60">Watanabe et al., 2011</xref>). The mammalian NCC is a110&#xa0;kDa membrane protein with 1,002 amino acid residues, and is glycosylated (<xref ref-type="bibr" rid="B6">Bostanjoglo et al., 1998</xref>). The NCC structure is composed of two grand cytosolic domains according to hydropathic analyses (<xref ref-type="bibr" rid="B31">Kyte and Doolittle, 1982</xref>), that correspond to the intracellular N-terminal and C-terminal ends that are connected by 12 central transmembrane helices (TM), (<xref ref-type="fig" rid="F2">Figure 2A</xref>). The protein is glycosylated in the asparagine residues (N406 and N426), located in the extracellular loop that binds TM7 and TM8 (EL4) (<xref ref-type="bibr" rid="B27">Hoover et al., 2003</xref>; <xref ref-type="bibr" rid="B23">Gamba, 2005</xref>; <xref ref-type="bibr" rid="B41">Nan et al., 2022</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>
<bold>(A)</bold> Phylogenetic tree of the electroneutral cation-coupled chloride cotransporters of the SLC12 family. Numbers indicate identity percentage. <bold>(B)</bold> Functional expression of different NCCs in <italic>Xenopus laevis</italic> oocytes. NCC activity of different species measured in the absence of extracellular Cl<sup>&#x2212;</sup> is represented by the light gray columns, meanwhile in the presence of the thiazide diuretic it is represented by the dark gray columns. <bold>(C)</bold> Summary of the different functional and structural properties of mammalian NCCs vs. NCCs from aquatic species. ND, not defined.</p>
</caption>
<graphic xlink:href="fphys-14-1118706-g001.tif"/>
</fig>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>
<bold>(A)</bold> Topology map of the NCC. The inverted arrangement of the TM1-5 and TM6-10 domains can be seen in blue and the TM11 and TM12 domains in orange. An extracellular loop with glycosylation sites is observed between the TM7-8 domains. Different amino acids linked to NCC function are also shown. <bold>(B)</bold> Magnified view of the TM1 and TM6 regions with the amino acids involved in ion binding. <bold>(C)</bold> Gitelman syndrome-linked mutations plotted onto the cryo-EM structure of NCC, shown as colored spheres depending on their location. Also grouped by location in the table with their identified mutation site. <bold>(D)</bold> Amino acid sequence alignments analysis of the ion binding sites in human CCCs. Copied from <xref ref-type="bibr" rid="B41">Nan et al. (2022)</xref>, supplemented with details from studies done by <xref ref-type="bibr" rid="B43">Pacheco-Alvarez et al. (2006)</xref>, <xref ref-type="bibr" rid="B40">Moreno et al. (2004)</xref>, <xref ref-type="bibr" rid="B36">Moreno et al. (2006)</xref>, <xref ref-type="bibr" rid="B38">Moreno et al. (2016)</xref>, <xref ref-type="bibr" rid="B39">Moreno et al. (2022)</xref>, <xref ref-type="bibr" rid="B35">Monroy et al. (2000)</xref>, <xref ref-type="bibr" rid="B10">Casta&#xf1;eda-Bueno et al. (2010)</xref>, <xref ref-type="bibr" rid="B53">Tutakhel et al. (2018)</xref>. Created by <ext-link ext-link-type="uri" xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="http://BioRender.com">BioRender.com</ext-link>.</p>
</caption>
<graphic xlink:href="fphys-14-1118706-g002.tif"/>
</fig>
</sec>
<sec id="s3">
<title>Functional properties of NCC</title>
<p>The cloning of NCC opened the possibility of exploring the distinct structural and functional aspects of the protein, <xref ref-type="bibr" rid="B35">Monroy et al. (2000)</xref>, <xref ref-type="bibr" rid="B54">V&#xe1;zquez et al. (2002)</xref> studied the kinetic properties of flNCC and rNCC, revealing that rNCC has a higher affinity for both transported ions, with a Michaelis-Menten constant (<italic>K</italic>
<sub>
<italic>m</italic>
</sub>) of 7.66 &#xb1; 1.6&#xa0;mM for Na<sup>&#x2b;</sup> and 6.36 &#xb1; 1.1 for Cl<sup>&#x2212;</sup>, compared to flNCC that displayed <italic>K</italic>
<sub>
<italic>m</italic>
</sub> values of 25.06 &#xb1; 0.4 for Na<sup>&#x2b;</sup> and 13.56 &#xb1; 0.2&#xa0;mM for Cl<sup>&#x2212;</sup> (<xref ref-type="fig" rid="F1">Figure 1C</xref>). The Hill coefficient of sodium and chloride in both cotransporters was close to 1, demonstrating an electroneutral cotransporter. NCC is specifically inhibited by thiazide-type diuretics, with a higher affinity in the rNCC orthologue than in the flNCC (<xref ref-type="fig" rid="F1">Figure 1C</xref>). Throughout the last few years, the kinetic properties of sNCC, eNCC and jNCC have also been studied, as shown in <xref ref-type="fig" rid="F1">Figures 1A, C</xref> a lower affinity for transported ions is found in these aquatic species (<xref ref-type="bibr" rid="B38">Moreno et al., 2016</xref>; <xref ref-type="bibr" rid="B37">Moreno et al., 2019</xref>; <xref ref-type="bibr" rid="B39">Moreno et al., 2022</xref>). As we previously described, different NCC species demonstrate different <italic>K</italic>
<sub>
<italic>m</italic>
</sub> values of the ions transported. Currently, it is known that NCC&#x2019;s ion binding sites are highly conserved in other members of the SLC12 family (<xref ref-type="bibr" rid="B41">Nan et al., 2022</xref>); however, it is difficult to comprehend the conformational changes that occur in NCCs of different species due to the differing percentages of identity in their amino acid sequences. At this moment, the role of residues near the ion binding sites remains unclear; nevertheless, they are certainly responsible for determining the different affinities for ion transport. NCC expression has been limited to the distal convoluted tubule of different species. However, it has been reported that in the European and Japanese eels, two isoforms of NCC exist and originate from different genes. <xref ref-type="bibr" rid="B15">Cutler and Cramb (2008)</xref> cloned NCC alpha (eNCC&#x237a;) from renal tissue and NCC beta (eNCC&#x3b2;) from intestinal tissue of the European eel; the identity with mammalian NCC for eNCC&#x237a; and eNCC&#x3b2; is &#x223c;70% and 55% respectively. <xref ref-type="bibr" rid="B38">Moreno et al. (2016)</xref> observed that although eNCC&#x3b2; is a Na-Cl cotransporter, it is nevertheless insensitive to thiazides (<xref ref-type="fig" rid="F1">Figure 1B</xref>), because concentrations of up to 10<sup>&#x2013;3</sup>&#xa0;M of different thiazides could not inhibit their function. <xref ref-type="bibr" rid="B60">Watanabe et al. (2011)</xref> reported the cloning of NCC&#x3b2; derived from intestinal tissue of a Japanese eel (jNCC&#x3b2;), observing that it was sensitive to hydrochlorothiazide in prepared rectal sacs. eNCC&#x3b2; and jNCC&#x3b2; were 98% identical, only differing by 13 amino acids (<xref ref-type="bibr" rid="B38">Moreno et al., 2016</xref>). By utilizing <italic>Xenopus laevis</italic> oocytes as a functional expression system, Moreno <italic>et al.,</italic> recently reported that jNCC&#x3b2; is also not sensitive to thiazides, highlighting the different findings in the cotransporter&#x2019;s diuretic sensitivity (<xref ref-type="fig" rid="F1">Figure1 B</xref>) (<xref ref-type="bibr" rid="B39">Moreno et al., 2022</xref>).</p>
<p>NCC has been described as the electroneutral cotransporter incapable of producing an electrical current. However, the functional characterization of eNCC&#x3b2; and jNCC&#x3b2; demonstrated an electrical current dependent on the voltage (<xref ref-type="bibr" rid="B39">Moreno et al., 2022</xref>) of <italic>X. laevis</italic> oocytes. Studies found that although most Na<sup>&#x2b;</sup> and Cl<sup>&#x2212;</sup> transport was interdependent on the Hill coefficient of 1:1, the uptake of <sup>22</sup>Na<sup>&#x2b;</sup> induced by NCC&#x3b2; depended utterly on the presence of chloride; meanwhile the uptake of <sup>36</sup>Cl<sup>&#x2212;</sup> did not depend entirely on Na<sup>&#x2b;</sup>; therefore, suggesting the generation of a remainder Cl<sup>&#x2212;</sup> current. To verify this<bold>,</bold> the current was inverted to 20&#xa0;mV of which the elimination of Na<sup>&#x2b;</sup> of the washed solution was unaffected but was eliminated completely when Cl<sup>&#x2212;</sup> was absent, strongly suggesting that it was a chloride-dependent current. Thus, the non-renal NCC&#x3b2; variant of NCC is an electrogenic Na-Cl cotransporter that is not sensitive to thiazides; the characterization of the generated current by European and Japanese eel NCC&#x3b2; isoforms will be the subject of many future studies.</p>
</sec>
<sec id="s4">
<title>Amino acids linked to NCC function</title>
<sec id="s4-1">
<title>Transmembrane regions (TM)</title>
<p>Since the cloning of NCC in different species, the primary sequences of the cotransporter were of great use in initializing comparative structural analyses. The identity of hNCC is &#x223c;90% with other mammalian NCCs and &#x223c;60% with flNCC, meanwhile the mammalian NCC exhibits &#x223c;55% identity to that of the eel&#x2019;s NCC&#x3b2; (<xref ref-type="fig" rid="F1">Figure 1C</xref>). The structural comparisons determined that the TM segments are where the major percentage of identity is found (&#x223c;80%). In contrast, the N-terminal and C-terminal regions are less similar, sharing around 20% and 55%. In 2003, Hoover <italic>et al.</italic> (Hoover et al., 2003) demonstrated that rNCC has two N-glycosylation sites located in EL4. N404 and N424 are essential for proper rNCC expression and function. Mutated clones in any of the two sites decreased rNCC function and when both sites were absent more than 80% of its function was reduced. On the contrary, the elimination of N-glycosylation resulted in an exaggerated increase in rNCC&#x2019;s sensitivity to metolazone. <xref ref-type="bibr" rid="B36">Moreno et al. (2006)</xref> performed an alignment of NCC&#x2019;s EL4 of different species, and identified the already defined glycosylation sites in mammals and discovered three additional sites in flNCC, N403, N414 and N432. The first site N403 is the equivalent to N404 in rNCC and is conserved in all the species studied. N414 is only found in flNCC meanwhile N432 was identified in both flNCC and zfNCC sequences. Functional analyses of mutated and cloned N-glycosylation sites in flNCC did not display any disturbance in the cotransporter&#x2019;s function nor in its metolazone sensitivity. Only a partial reduction in function was observed in the clone that lacked all three sites. These studies concluded that the N-glycosylation sites did not appear to be determinants of NCC&#x2019;s functional properties.</p>
<p>By constructing chimeric proteins between mammalian NCC and flNCC, <xref ref-type="bibr" rid="B36">Moreno et al. (2006)</xref> determined that Cl<sup>&#x2212;</sup> transport in NCC is coordinated by the TM1-7 region, meanwhile thiazide binding is coordinated by the TM8-12 region. Previously, the importance of TM4 in the Cl<sup>&#x2212;</sup> affinity to NCC has been reported (<xref ref-type="bibr" rid="B40">Moreno et al., 2004</xref>). In a study of a single nucleotide polymorphism (SNP), glycine-264 (NCC-G264) was in this segment, revealing that NCC&#x2019;s affinity to Cl<sup>&#x2212;</sup> significantly increases at least one order of magnitude compared to that of a native transporter (<xref ref-type="fig" rid="F2">Figure 2A</xref>) (<xref ref-type="bibr" rid="B40">Moreno et al., 2004</xref>). This polymorphism was later shown to affect the response to loop diuretics since the activity of NCC in DCT compensates part of the natriuresis induced by the inhibition of salt reabsorption in the TAL (<xref ref-type="bibr" rid="B56">Vormfelde et al., 2007</xref>). Furthermore, the importance of TM8-12 in thiazide affinity was highlighted in a study by <xref ref-type="bibr" rid="B10">Casta&#xf1;eda-Bueno et al. (2010)</xref>. They found that TM11, specifically cysteine-575 in rNCC (substituted by a serine in flNCC) handles the difference in diuretic affinity in rNCC and flNCC.</p>
<p>Although the above studies brought us closer to identifying structure-function aspects of NCC, for many years the key amino acids involved in ion transport or thiazide remained unidentified. However, recent high-resolution studies on other members of the CCC family have found that ion and diuretic binding to the CCCs involves complex processes in different TM regions (<xref ref-type="bibr" rid="B46">Reid et al., 2020</xref>; <xref ref-type="bibr" rid="B12">Chew et al., 2021</xref>; <xref ref-type="bibr" rid="B67">Zhang et al., 2021</xref>).</p>
</sec>
<sec id="s4-2">
<title>N-terminal and C-terminal domains</title>
<p>As shown in other studies, the TM domain of NCC has been an object of study to understand ion transport and inhibition by thiazides. It was revealed that both the N-terminal and C-terminal domains do not participate in these functions (<xref ref-type="bibr" rid="B52">Tovar-Palacio et al., 2004</xref>; <xref ref-type="bibr" rid="B36">Moreno et al., 2006</xref>); however, specific amino acids involved in other NCC functions have been found in these domains.</p>
<p>It is known that the members of the SLC12 family are regulated by a cascade of kinases, in which With-No-Lysine kinase (WNK) phosphorylate and regulate the STE20/SPS1related proline-alanine-rich protein kinase (SPAK) and the Oxidative Stress-Responsive kinase 1 (OSR1). SPAK and OSR1 also phosphorylate CCCs (<xref ref-type="bibr" rid="B47">Richardson et al., 2008</xref>; <xref ref-type="bibr" rid="B20">Gagnon and Delpire, 2012</xref>; <xref ref-type="bibr" rid="B2">Alessi et al., 2014</xref>). Pacheco-Alvarez et al., demonstrated that the phosphorylation of rNCC occurred in residues: threonine-53 (T53), threonine-58 (T58) and serine-71 (S71) (<xref ref-type="bibr" rid="B43">Pacheco-Alvarez et al., 2006</xref>) (<xref ref-type="fig" rid="F1">Figure 1C</xref>), this was later biochemically demonstrated by <xref ref-type="bibr" rid="B47">Richardson et al. (2008)</xref>. In 2012, two phosphorylation sites were reported, <xref ref-type="bibr" rid="B48">Rosenbaek et al. (2012)</xref> identified a phosphorylation site at the N-terminal end of rNCC, serine-124 (S124). The phosphorylation of this residue was associated with the treatment of arginine vasopressin or a low sodium dietary state but was not related to with the participation of SPAK/OSR1. <xref ref-type="bibr" rid="B53">Tutakhel et al. (2018)</xref> studied a phosphorylation site exclusively found in the C-terminal domain of hNCC, serine-811 (S811), whose phosphorylation was necessary for the phosphorylation of T55 and T60 (<xref ref-type="fig" rid="F2">Figure 2A</xref>). Lastly, many amino acid residues in NCC have been studied because of their participation in Gitelman syndrome (GS) [OMIM 263800], defined as an autosomal recessive salt-wasting tubular disease caused by mutations in NCC (<xref ref-type="bibr" rid="B24">Gitelman et al., 1966</xref>; <xref ref-type="bibr" rid="B13">Cruz et al., 2001</xref>).</p>
<p>Studying these mutations has led to our understanding that the disruption of the protein&#x2019;s function can be because of alterations in the protein&#x2019;s synthesis, processing, membrane insertion, and degradation (<xref ref-type="bibr" rid="B49">Sabath et al., 2004</xref>). By searching the human genome database (HGMD, professional 2018.3), over 500 different mutations along NCC have been linked to Gitelman&#x2019;s disease. <xref ref-type="bibr" rid="B41">Nan et al. (2022)</xref> recently mapped out the numerous Gitelman syndrome-related mutations onto their NCC cryo-EM (single-particle Cryogenic Electron Microscopy) structure and classified them in five groups according to their function or location. In <xref ref-type="fig" rid="F2">Figure 2C</xref>, the mutations appear as various colored spheres: located extracellularly (yellow); in the ion translocation pathway (pink); other TM domains (cyan); TM-C-terminal interface (red); and in the N-terminal domain (green).</p>
</sec>
</sec>
<sec id="s5">
<title>SLC12 family structures in high resolution</title>
<sec id="s5-1">
<title>Amino acid residues involved in ion binding</title>
<p>The crystallographic structure of the C-terminal domain of a prokaryote CCC (archaea <italic>Methanosarcina acetivorans</italic>), was the first approach to reveal the architecture of this family. By using X-rays, <xref ref-type="bibr" rid="B59">Warmuth et al. (2009)</xref> demonstrated for the first time that the C-terminal domain was composed of organized &#x237a;/&#x3b2; sheets in two subdomains that were structurally related and appeared similar to universal stress proteins, USP (<xref ref-type="bibr" rid="B30">Kvint et al., 2003</xref>). It was also discovered that this domain was capable of forming dimers through a hydrophilic interface rich in arginine and glutamate residues (<xref ref-type="bibr" rid="B59">Warmuth et al., 2009</xref>). Since 2013, most of these atomic structures deposited in protein banks (PDB) were determined by X-ray crystallography; however, the method was limited to many mammalian membrane proteins. In the last decade, cryo-EM became an effective and reliable technique for achieving an atomic resolution of protein structures. In 2019, <xref ref-type="bibr" rid="B11">Chew et al. (2019)</xref> reported the first high resolution structure of a member of the CCC family, NKCC1 from the <italic>Danio rerio</italic> zebrafish (zfNKCC1).</p>
<p>The images demonstrated that the conformation of the TM domains of zfNKCC1 is like that of the Amino Acid-Polyamine-Organocation (APC) family with inverted architecture of the TM1-5 and TM6-10 domains. Two extracellular loops were found in between TM7-8 (EL4) and between TM5-6 (EL3) thus forming a cap domain. The cap domain is necessary for the expression and regulation of transport of human NKCC1 (hNKCC1) (<xref ref-type="bibr" rid="B66">Ye et al., 2012</xref>). The zfNKCC1 structure was captured in a partially open inward conformation, forming a vestibule comprising of the TM1, TM3, TM6, and TM8 regions that extends to the intracellularly surface; different electrostatic charges exist within the vestibule, which facilitates ion accommodation. Solid evidence suggests that K<sup>&#x2b;</sup> binding is coordinated by a hydroxyl group of tyrosine-305 (Y305), which is conserved in all K<sup>&#x2b;</sup> binding cotransporters (NKCC and KCC) but not in the K<sup>&#x2b;</sup> -independent NCC (which contains histidine instead of tyrosine). Besides Y305, asparagine-220 (N220), isoleucine-221 (I221), proline-417 (P417) and threonine-420 (T420) are involved in K<sup>&#x2b;</sup> binding in the TM1 and TM6 regions. In the case of the Na<sup>&#x2b;</sup> binding site, amino acids found in TM1 (leucine-219 (L219), tryptophan-222 (W222), and in TM8 (serine-538&#xa0;years serine-539 (S538 and S539) are involved. This site is highly conserved in the transporters that pertain to the APC family, this is supported by the closeness in an overlap of the zfNKCC1 structure onto the Na<sup>&#x2b;</sup> bound sialic acid transporter of the <italic>P. mirabilis</italic> (SiaT) structure. In the case of Cl<sup>&#x2212;</sup>, dynamic simulations involving all the atoms (Na<sup>&#x2b;</sup>, K<sup>&#x2b;</sup>, and Cl<sup>&#x2212;</sup>) revealed three binding sites for this ion. Nonetheless, it was proposed that Cl<sup>&#x2212;</sup> bonded to only two sites, the first (site 1) was coordinated by K<sup>&#x2b;</sup> and the residues: valine-224 (V224) and methionine-225 (M225). The second (site 2) is coordinated by the residues: glycine-421 (G421), leucine-423 (L423) and tyrosine-611 (Y611). Since the cryo-EM structure of the hNKCC1 was similar to that of zfNKCC1, the ion binding sites involved the same residues (<xref ref-type="bibr" rid="B67">Zhang et al., 2021</xref>). Furthermore, the general architecture of KCCs is also similar to that of zfNKCC1 and hNKCC1 (<xref ref-type="bibr" rid="B67">Zhang et al., 2021</xref>). In the crystallographic structure of KCC, the TM regions share the same disposition observed in the APC family, and the overlap of both KCC and APC structures presents conserved ion binding sites (<xref ref-type="bibr" rid="B46">Reid et al., 2020</xref>; <xref ref-type="bibr" rid="B65">Xie et al., 2020</xref>). However, when compared to the Na<sup>&#x2b;</sup>-dependent cotransporters, a unique aspect pertaining to KCCs is a longer extracellular loop in between TM5-6 (<xref ref-type="bibr" rid="B32">Liu et al., 2019</xref>).</p>
<p>Recently, a high resolution cryo-EM structure of NCC was achieved (<xref ref-type="bibr" rid="B41">Nan et al., 2022</xref>). The map of the TM regions permitted the construction of precise atomic models of this region and EL4 as well. Unfortunately, a moderately clear C-terminal domain was obtained. The NCC structure displayed a dimeric architecture and the TM regions adopted a similar conformation observed in members of the APC family (<xref ref-type="fig" rid="F2">Figure 2A</xref>). Notably, TM1 and TM6 helices were interrupted in the medial region, forming discontinuous sites adequate for ion binding. Two extracellular loops were observed superior to the TM domain, one loop connected to TM5 and TM6, and another to TM7 and TM8. In the first loop, two helices are formed (EL1 and EL2); meanwhile in the second loop, there are three helices (EL3 to EL5). Two glycosylation sites were also observed (N406 and N426) that are essential for efficient NCC expression and activity (<xref ref-type="bibr" rid="B27">Hoover et al., 2003</xref>). Nan <italic>et al.</italic> defined two Na<sup>&#x2b;</sup> binding sites and two Cl<sup>&#x2212;</sup> binding sites in their NCC structure. Both Na<sup>&#x2b;</sup>1 and Cl<sup>&#x2212;</sup>1 binding sites are located in a pocket formed by the antiparallel broken helices of TM1 and TM6, and correspond to the conserved K<sup>&#x2b;</sup> and Cl<sup>&#x2212;</sup>1 binding sites in NKCC1 and KCCs (<xref ref-type="bibr" rid="B11">Chew et al., 2019</xref>; <xref ref-type="bibr" rid="B32">Liu et al., 2019</xref>; <xref ref-type="bibr" rid="B65">Xie et al., 2020</xref>; <xref ref-type="bibr" rid="B42">Neumann et al., 2022</xref>) (<xref ref-type="fig" rid="F2">Figures 2A, B, D</xref>).</p>
<p>The Cl<sup>&#x2212;</sup>1 binding site is coordinated by the main-chain amide group of glycine-152 (G152), valine-153 (V153), and isoleucine-154 (I154 of TM1) and the hydroxyl group of serine-350 (S350), that also weakly coordinates this ion. The Na<sup>&#x2b;</sup>1 binding site is accommodated by the main-chain carbonyl groups of asparagine-149 (N149), isoleucine-150 (I150), proline-349 (P349), and threonine-352 (T352) (<xref ref-type="fig" rid="F2">Figure 2B</xref>), <xref ref-type="bibr" rid="B41">Nan et al. (2022)</xref>. Notably, mutations in I150M, V153M, I154F y P349L, can cause Gitelman syndrome, demonstrating the important role of these residues in NCC transport activity (<xref ref-type="fig" rid="F2">Figure 2C</xref>). The histidine (H234) residue is located in the TM3 region, near Na<sup>&#x2b;</sup>1 and Cl<sup>&#x2212;</sup>1 and is considered to be a key residue in Na &#x2b; transport in NCC since other CCCs contain a tyrosine residue instead. Another conserved residue, tyrosine-386 (Y386) in TM7 interacts with the main chain carbonyl groups of Ile-150 and Ser-350. Y386 is highly conserved in all the members of the SLC12 family and can be essential to ion coordination and coupling involving TM1, TM6, and TM7 (<xref ref-type="fig" rid="F2">Figure 2D</xref>).</p>
<p>The second Cl<sup>&#x2212;</sup> site (Cl<sup>&#x2212;</sup>2) is also conserved in both sodium as well as potassium coupled cotransporters (<xref ref-type="bibr" rid="B17">Delpire and Guo, 2020</xref>; <xref ref-type="bibr" rid="B12">Chew et al., 2021</xref>; <xref ref-type="bibr" rid="B45">Portioli et al., 2021</xref>). Additionally, the second Na<sup>&#x2b;</sup> binding site (Na<sup>&#x2b;</sup>2) identified in NCC was also reported in NKCC1 (<xref ref-type="bibr" rid="B11">Chew et al., 2019</xref>; <xref ref-type="bibr" rid="B42">Neumann et al., 2022</xref>; <xref ref-type="bibr" rid="B68">Zhao et al., 2022</xref>) (<xref ref-type="fig" rid="F2">Figure 2D</xref>). Na<sup>&#x2b;</sup>2 is coordinated by the hydroxyl groups of serine-467 (S467) and serine-468 (S468) of TM8 as well as alanine-464 (A464), tryptophan-151 (W151) and leucine-148 (L148). Sequence alignments demonstrated that the two serine residues that coordinate Na<sup>&#x2b;</sup>2 are also conserved in Na<sup>&#x2b;</sup> dependent CCCs but are absent in Na<sup>&#x2b;</sup> independent cotransporters (<xref ref-type="bibr" rid="B41">Nan et al., 2022</xref>).</p>
<p>Finally, the cryo-EM structure of NCC reported by Nan <italic>et al.</italic>, provides an improved and detailed view of the cotransporter and its defined ion bindings sites, paving the way in determining ion transport and developing NCC specific medication in the near future.</p>
</sec>
</sec>
<sec id="s6">
<title>Concluding comments</title>
<p>The advances in the structural elucidation of the CCC family members through the use of the cryo-EM technique along with a functional characterization of the different cotransporters have brought out substantial information about NCC function at a molecular level. Although there are still many questions left unanswered, these impressive studies provide a solid foundation to understand the structure-function relationship of the cotransporter. Hopefully, soon, the creation of a high-resolution structure will allow us to visualize the interactions between NCC and thiazides, which will shed light on the molecular basis of their pharmacology and will lead to the development of medication with better therapeutic benefits and use.</p>
</sec>
</body>
<back>
<sec id="s7">
<title>Author contributions</title>
<p>EM formatted, wrote, edited, revised and approved the final draft. DP-A formatted, wrote, edited, revised and approved the final draft. MC-C formatted, edited, revised and approved the final draft. SE formatted, wrote, edited, revised and approved the final draft. KL-R designed the figures, formatted, wrote, edited, revised and approved the final draft. GG edited, revised and approved the final draft.</p>
</sec>
<sec id="s8">
<title>Funding</title>
<p>The authors are supported by grants from CONACyT Mexico (87794 to MC-C and EM) and from PAPIIT UNAM (IA208522 to MC-C).</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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