<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article article-type="research-article" dtd-version="2.3" xml:lang="EN" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Physiol.</journal-id>
<journal-title>Frontiers in Physiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Physiol.</abbrev-journal-title>
<issn pub-type="epub">1664-042X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1066351</article-id>
<article-id pub-id-type="doi">10.3389/fphys.2022.1066351</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Physiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>A mechanics-based perspective on the pressure-cross-sectional area loop within the esophageal body</article-title>
<alt-title alt-title-type="left-running-head">Elisha et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fphys.2022.1066351">10.3389/fphys.2022.1066351</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Elisha</surname>
<given-names>Guy</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2144416/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Halder</surname>
<given-names>Sourav</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Carlson</surname>
<given-names>Dustin A.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kahrilas</surname>
<given-names>Peter J.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Pandolfino</surname>
<given-names>John E.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Patankar</surname>
<given-names>Neelesh A.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2011433/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Mechanical Engineering</institution>, <institution>McCormick School of Engineering</institution>, <institution>Northwestern University</institution>, <addr-line>Evanston</addr-line>, <addr-line>IL</addr-line>, <country>United States</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Theoretical and Applied Mechanics Program</institution>, <institution>McCormick School of Engineering</institution>, <institution>Northwestern University</institution>, <addr-line>Evanston</addr-line>, <addr-line>IL</addr-line>, <country>United States</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Division of Gastroenterology and Hepatology</institution>, <institution>Feinberg School of Medicine</institution>, <institution>Northwestern University</institution>, <addr-line>Chicago</addr-line>, <addr-line>IL</addr-line>, <country>United States</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/563678/overview">Luca Dede&#x2019;</ext-link>, Politecnico di Milano, Italy</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1818152/overview">Francesco Regazzoni</ext-link>, Politecnico di Milano, Italy</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/4256/overview">Greger Lindberg</ext-link>, Karolinska Institutet (KI), Sweden</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Neelesh A. Patankar, <email>n-patankar@northwestern.edu</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Computational Physiology and Medicine, a section of the journal Frontiers in Physiology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>09</day>
<month>01</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>13</volume>
<elocation-id>1066351</elocation-id>
<history>
<date date-type="received">
<day>10</day>
<month>10</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>12</day>
<month>12</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Elisha, Halder, Carlson, Kahrilas, Pandolfino and Patankar.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Elisha, Halder, Carlson, Kahrilas, Pandolfino and Patankar</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>
<bold>Introduction:</bold> Plotting the pressure-cross-sectional area (P-CSA) hysteresis loops within the esophagus during a contraction cycle can provide mechanistic insights into esophageal motor function. Pressure and cross-sectional area during secondary peristalsis can be obtained from the functional lumen imaging probe (FLIP). The pressure-cross-sectional area plots at a location within the esophageal body (but away from the sphincter) reveal a horizontal loop shape. The horizontal loop shape has phases that appear similar to those in cardiovascular analyses, whichinclude isometric and isotonic contractions followed by isometric and isotonic relaxations. The aim of this study is to explain the various phases of the pressurecross-sectional area hysteresis loops within the esophageal body.</p>
<p>
<bold>Materials and Methods:</bold> We simulate flow inside a FLIP device placed inside the esophagus lumen. We focus on three scenarios: long functional lumen imaging probe bag placed insidethe esophagus but not passing through the lower esophageal sphincter, long functional lumen imaging probe bag that crosses the lower esophageal sphincter, and a short functional lumen imaging probe bag placed in the esophagus body that does not pass through the lower esophageal sphincter.</p>
<p>
<bold>Results and Discussion:</bold> Horizontal P-CSA area loop pattern is robust and is reproduced in all three cases with only small differences. The results indicate that the horizontal loop pattern is primarily a product of mechanical conditions rather than any inherently different function of the muscle itself. Thus, the distinct phases of the loop can be explained solely based on mechanics.</p>
</abstract>
<kwd-group>
<kwd>sphincter</kwd>
<kwd>esophagus</kwd>
<kwd>peristalsis</kwd>
<kwd>pressure-area hysteresis loop</kwd>
<kwd>functional luminal imaging probe</kwd>
<kwd>mechanical states</kwd>
</kwd-group>
<contract-num rid="cn001">R01- DK079902 P01-DK117824</contract-num>
<contract-num rid="cn002">1450374 1931372</contract-num>
<contract-sponsor id="cn001">U.S. Public Health Service<named-content content-type="fundref-id">10.13039/100007197</named-content>
</contract-sponsor>
<contract-sponsor id="cn002">National Science Foundation<named-content content-type="fundref-id">10.13039/100000001</named-content>
</contract-sponsor>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>A healthy functioning esophagus transports swallowed material from the mouth towards the stomach through peristaltic contraction (<xref ref-type="bibr" rid="B42">Regan et al., 2012</xref>; <xref ref-type="bibr" rid="B24">Jain et al., 2019</xref>). Patients with systemic sclerosis, achalasia, dysphagia, and other motor disorders have impaired esophageal peristalsis (<xref ref-type="bibr" rid="B25">Kahrilas, 2008</xref>; <xref ref-type="bibr" rid="B43">Shaheen et al., 2010</xref>; <xref ref-type="bibr" rid="B19">Gregersen et al., 2011</xref>; <xref ref-type="bibr" rid="B5">Aziz et al., 2016</xref>). Thus, understanding esophageal motor function and investigating the contractile behavior of esophageal smooth muscles can help in identifying esophageal disease progression and develop diagnostic tools. Extensive computational studies have been performed in recent years on the mechanics of esophageal transport (<xref ref-type="bibr" rid="B26">Kou et al., 2017a</xref>; <xref ref-type="bibr" rid="B27">Kou et al., 2017b</xref>; <xref ref-type="bibr" rid="B29">Kou et al., 2018</xref>; <xref ref-type="bibr" rid="B28">Kou et al., 2017c</xref>; <xref ref-type="bibr" rid="B3">Acharya et al., 2022</xref>; <xref ref-type="bibr" rid="B21">Halder et al., 2021</xref>; <xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>; <xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>; <xref ref-type="bibr" rid="B1">Acharya et al., 2021a</xref>; <xref ref-type="bibr" rid="B14">Elisha et al., 2021</xref>; <xref ref-type="bibr" rid="B33">Liao et al., 2020</xref>) and emptying as well as the state of various esophageal diseases (<xref ref-type="bibr" rid="B2">Acharya et al., 2021b</xref>; <xref ref-type="bibr" rid="B20">Halder et al., 2022a</xref>; <xref ref-type="bibr" rid="B23">Halder et al., 2022c</xref>; <xref ref-type="bibr" rid="B22">Halder et al., 2022b</xref>).</p>
<p>In recent years, several studies used pressure-cross-sectional area (P-CSA) relationship during esophageal contraction cycle to investigate esophageal wall function (<xref ref-type="bibr" rid="B44">Villadsen et al., 2001</xref>; <xref ref-type="bibr" rid="B19">Gregersen et al., 2011</xref>; <xref ref-type="bibr" rid="B34">Liao et al., 2013</xref>; <xref ref-type="bibr" rid="B31">Leibbrandt et al., 2016</xref>; <xref ref-type="bibr" rid="B14">Elisha et al., 2021</xref>). This approach is borrowed from cardiovascular analyses, which uses pressure-volume (P-V) plots to study dynamic motor activity and explain the pumping mechanism of the left ventricle and its dysfunction (<xref ref-type="bibr" rid="B17">Gregersen et al., 2007</xref>; <xref ref-type="bibr" rid="B19">Gregersen et al., 2011</xref>; <xref ref-type="bibr" rid="B34">Liao et al., 2013</xref>; <xref ref-type="bibr" rid="B18">Gregersen and Lo, 2018</xref>).</p>
<p>Tracking the pressure and CSA during a distention-induced contraction cycle of the esophagus was made possible by the functional lumen imaging probe (FLIP) (<xref ref-type="bibr" rid="B32">Liao et al., 2014</xref>; <xref ref-type="bibr" rid="B38">Moonen and Boeckxstaens, 2014</xref>; <xref ref-type="bibr" rid="B36">Lottrup et al., 2015</xref>). The FLIP device, illustrated in <xref ref-type="fig" rid="F1">Figure 1</xref>, consists of a catheter surrounded by a fluid filled bag, placed inside the esophagus. The filled bag results in mechanical distention, which induces secondary peristalsis in the esophagus (<xref ref-type="bibr" rid="B11">Clarke et al., 2020</xref>). The response of the esophagus wall to the distention is captured by the FLIP in the form of CSA readings at 16 locations and one distal pressure measurement as a function of time (<xref ref-type="bibr" rid="B10">Carlson et al., 2015</xref>; <xref ref-type="bibr" rid="B8">Carlson et al., 2016</xref>). The FLIP in the esophagus can be placed such that it passes through the lower esophageal sphincter (LES), as in the middle illustration in <xref ref-type="fig" rid="F1">Figure 1</xref>, or not, as in the left illustration in <xref ref-type="fig" rid="F1">Figure 1</xref>.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Diagram showing the FLIP bag and catheter assembly placed within the esophagus, passing through the LES or not. The bag used in this study is 16&#xa0;cm long and 22&#xa0;mm diameter. The catheter measures CSA at 16 location and one distal pressure measurement at each time instant.</p>
</caption>
<graphic xlink:href="fphys-13-1066351-g001.tif"/>
</fig>
<p>As reported by <xref ref-type="bibr" rid="B19">Gregersen et al. (2011)</xref>, the P-CSA hysteresis loop, at any location within the esophagus body (i.e., away from the lower esophageal sphincter or the LES), during distention-induced secondary peristalsis reveals a horizontal loop shape, presented in <xref ref-type="fig" rid="F2">Figure 2A</xref>. This loop pattern looks similar to the one obtained from the left ventricle, and therefore, the loop was explained analogously. The esophageal P-CSA hysteresis loop was divided into four phases, each named analogously after the corresponding phase on the P-V loop plotted for the left ventricle. These phases are isometric contraction, isotonic contraction, isometric relaxation, and isotonic relaxation (<xref ref-type="bibr" rid="B19">Gregersen et al., 2011</xref>). Similar terminology was used by others <xref ref-type="bibr" rid="B31">Leibbrandt et al. (2016)</xref>; <xref ref-type="bibr" rid="B39">Omari et al. (2015)</xref> when analyzing P-CSA hysteresis loop within the esophagus body or at the upper esophageal sphincter using a different measuring device.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>P-CSA relationships in the esophagus body for four different contraction cycles with different experimental setups. <bold>(A)</bold> P-CSA extracted from a 4-cm long FLIP obtained by <xref ref-type="bibr" rid="B19">Gregersen et al. (2011)</xref>. <bold>(B)</bold> and <bold>(C)</bold> P-CSA extracted from a 16-cm long FLIP at 60&#xa0;ml, where the FLIP bag passes through the LES. These hystereses are plotted from data recorded at a sensor located away from the LES. <bold>(D)</bold> P-CSA extracted from a 16-cm long FLIP at 60&#xa0;ml, where the FLIP bag does not cross the LES.</p>
</caption>
<graphic xlink:href="fphys-13-1066351-g002.tif"/>
</fig>
<p>While the resulting P-CSA loop within the esophagus body during the FLIP experiment and the P-V loop in the left ventricle have a similar pattern, the mechanical functioning is different. For example, the volume inside the ventricle changes through the cardiac cycle whereas the volume inside the esophagus during secondary peristalsis in a FLIP device is constant. Here, we aim to provide a mechanics-based explanation for the P-CSA loop within the esophagus body. Specifically, we show that the various phases in the loop shape are a result of the mechanical conditions (muscle contraction, boundary condition, and geometric configuration) rather than any inherently different function of the muscle itself.</p>
<sec id="s1-1">
<title>1.1 Pressure-CSA loops within the esophagus body</title>
<p>
<xref ref-type="fig" rid="F2">Figure 2</xref> presents four plots of the pressure within the esophageal body as a function of wall CSA during contraction cycles from four different experiments. <xref ref-type="fig" rid="F2">Figure 2A</xref> displays the results obtained by <xref ref-type="bibr" rid="B19">Gregersen et al. (2011)</xref>. In their work, the FLIP bag was 4&#xa0;cm long and the maximum bag diameter was 5&#xa0;cm. The middle of the bag was placed 7&#xa0;cm above the LES and did not pass through it. <xref ref-type="fig" rid="F2">Figures 2B, C</xref> display two examples of P-CSA loops obtained by a 16&#xa0;cm FLIP bag at 60&#xa0;ml bag fill, where the bag passes through the LES. Lastly, the loop plotted in <xref ref-type="fig" rid="F2">Figure 2D</xref> is extracted by a 16&#xa0;cm FLIP bag at 60&#xa0;ml bag fill, where the bag does not cross the LES.</p>
<p>The data for <xref ref-type="fig" rid="F2">Figures 2B&#x2013;D</xref> was collected at the Esophageal Center of Northwestern between November 2012 and October 2018, using EndoFLIP<sup>&#xae;</sup> (EF-322N; Medtronic, Inc., Shoreview, MN, United States) (<xref ref-type="bibr" rid="B1">Acharya et al., 2021a</xref>; <xref ref-type="bibr" rid="B7">Carlson et al., 2021</xref>). We examined a total of 24 randomly selected, asymptomatic volunteers for the cases where the FLIP passes through the LES, and two cases where it does not. Informed consent was obtained for subject participation; they were paid for their participation. The study protocol was approved by the Northwestern University Institutional Review Board. Additional details on the data collection process and subject cohort selection is available in (<xref ref-type="bibr" rid="B35">Lin et al., 2013</xref>; <xref ref-type="bibr" rid="B8">Carlson et al., 2016</xref>; <xref ref-type="bibr" rid="B7">Carlson et al., 2021</xref>; <xref ref-type="bibr" rid="B1">Acharya et al., 2021a</xref>). Since FLIP provides only one distal pressure reading, pressure at different locations along the esophagus length was calculated using the distal pressure, CSA measurements, the mass conservation equation, and the momentum equation (discussed in <xref ref-type="sec" rid="s2-1">Section 2.1</xref>), as proposed by <xref ref-type="bibr" rid="B21">Halder et al. (2021)</xref>.</p>
<p>As <xref ref-type="fig" rid="F2">Figure 2</xref> reveals, the P-CSA hysteresis plotted at a location within the esophagus body displays a loop of average horizontal orientation. This is opposed to the loops of positive or negative slope orientation which have been reported at sphincter locations of different organs (<xref ref-type="bibr" rid="B46">Zifan et al., 2019</xref>; <xref ref-type="bibr" rid="B15">Elisha et al., 2022b</xref>). A loop in considered horizontal when the magnitude of the slope of its best fit line for the point cloud representing the hysteresis is such that &#x7c;slope&#x7c; &#x3c; .1. The point cloud is obtained by discretizing the loop into equal CSA segments (<italic>&#x2206;A</italic>) and finding the corresponding pressure values. In the positive and negative slope loops at sphincter locations of different organs, the slopes are clearly greater in magnitude than the .1 threshold used above to define a horizontal loop.</p>
<p>On each plot in <xref ref-type="fig" rid="F2">Figure 2</xref>, the four phases identified by <xref ref-type="bibr" rid="B19">Gregersen et al. (2011)</xref> are marked. <xref ref-type="bibr" rid="B19">Gregersen et al. (2011)</xref> refer to phases 1 and 2 as contraction, while phases 3 and 4 as relaxation. To explain these phases, we reproduce esophageal secondary peristalsis using simulations, discussed next.</p>
</sec>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>2 Materials and methods</title>
<p>In our previous studies, we developed a one dimensional (1D) model of a flow inside an elastic tube closed on both ends to imitate a flow inside a FLIP device (<xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>; <xref ref-type="bibr" rid="B14">Elisha et al., 2021</xref>; <xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>; <xref ref-type="bibr" rid="B23">Halder et al., 2022c</xref>). Our goal was to study the relation between tube properties, fluid properties, muscle activation pattern, and their effect on pressure and CSA of the tube. In this section, we summarize the mathematical model.</p>
<sec id="s2-1">
<title>2.1 Governing equations in 1D</title>
<p>The 1D mass and momentum conservation equations are<disp-formula id="e1">
<mml:math id="m1">
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2b;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>u</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>x</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
<mml:mo>,</mml:mo>
</mml:math>
<label>(1)</label>
</disp-formula>and<disp-formula id="e2">
<mml:math id="m2">
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>u</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>u</mml:mi>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>u</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>x</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3c1;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>P</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>x</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>8</mml:mn>
<mml:mi>&#x3c0;</mml:mi>
<mml:mi>&#x3bc;</mml:mi>
<mml:mi>u</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3c1;</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>,</mml:mo>
</mml:math>
<label>(2)</label>
</disp-formula>respectively, which were derived by <xref ref-type="bibr" rid="B40">Ottesen (2003)</xref>. Here, <italic>A</italic>(<italic>x</italic>, <italic>t</italic>), <italic>u</italic>(<italic>x</italic>, <italic>t</italic>), <italic>P</italic>(<italic>x</italic>, <italic>t</italic>), <italic>&#x3c1;</italic> and <italic>&#x3bc;</italic> are the tube CSA, fluid velocity (averaged at each cross-sectional area), pressure inside the tube, fluid density, and fluid viscosity, respectively. To complete the system, we relate pressure and CSA by a linear constitutive equation of the form<disp-formula id="e3">
<mml:math id="m3">
<mml:mi>P</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>K</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>x</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>A</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mi>&#x3b8;</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>x</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x2b;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>P</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>.</mml:mo>
</mml:math>
<label>(3)</label>
</disp-formula>This relation, also known as the &#x201c;Tube Law,&#x201d; was derived by <xref ref-type="bibr" rid="B45">Whittaker et al. (2010)</xref> and validated experimentally by <xref ref-type="bibr" rid="B30">Kwiatek et al. (2011)</xref>. In the equation above, <italic>P</italic>
<sub>
<italic>o</italic>
</sub> is the outside pressure, <italic>K</italic>
<sub>
<italic>e</italic>
</sub> is tube stiffness, and <italic>A</italic>
<sub>
<italic>o</italic>
</sub> is the undeformed reference area (CSA of the tube when <italic>P</italic> &#x3d; <italic>P</italic>
<sub>
<italic>o</italic>
</sub>) (<xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>; <xref ref-type="bibr" rid="B14">Elisha et al., 2021</xref>; <xref ref-type="bibr" rid="B15">Elisha et al., 2022b</xref>; <xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>). Lastly, to mimic muscle peristaltic contraction, we vary the reference area sinusoidally by multiplying <italic>A</italic>
<sub>
<italic>o</italic>
</sub> by an activation function <italic>&#x3b8;</italic>(<italic>x</italic>, <italic>t</italic>) (<xref ref-type="bibr" rid="B40">Ottesen, 2003</xref>; <xref ref-type="bibr" rid="B37">Manopoulos et al., 2006</xref>; <xref ref-type="bibr" rid="B6">Bringley et al., 2008</xref>; <xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>; <xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>). As Eq. <xref ref-type="disp-formula" rid="e3">3</xref> suggests, contraction implies reduction of the tube&#x2019;s reference CSA (<italic>&#x3b8;</italic> &#x3c; 1), and relaxation is associated with increase in the reference CSA (<italic>&#x3b8;</italic> &#x3e; 1). When <italic>&#x3b8;</italic> &#x3d; 1, neither contraction nor relaxation are present. Note that in the simulations described in this report, <italic>&#x3b8;</italic> is either less than or equal to 1. The expression for <italic>&#x3b8;</italic>(<italic>x</italic>, <italic>t</italic>) is discussed in <xref ref-type="sec" rid="s2-3">Section 2.3</xref>.</p>
</sec>
<sec id="s2-2">
<title>2.2 Non-dimensional dynamic equations</title>
<p>We non-dimensionalize the dynamic system using<disp-formula id="e4">
<mml:math id="m4">
<mml:mi>A</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mi>&#x3b1;</mml:mi>
<mml:msub>
<mml:mrow>
<mml:mi>A</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>,</mml:mo>
<mml:mspace width="2em"/>
<mml:mi>t</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:mfrac>
<mml:mrow>
<mml:mi>L</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>w</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>c</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:mo>,</mml:mo>
<mml:mspace width="2em"/>
<mml:mi>u</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mi>U</mml:mi>
<mml:msub>
<mml:mrow>
<mml:mi>w</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>c</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>,</mml:mo>
<mml:mi>P</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mi>p</mml:mi>
<mml:msub>
<mml:mrow>
<mml:mi>K</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>,</mml:mo>
<mml:mspace width="2em"/>
<mml:mtext>and</mml:mtext>
<mml:mspace width="2em"/>
<mml:mi>x</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mi>&#x3c7;</mml:mi>
<mml:mi>L</mml:mi>
<mml:mo>,</mml:mo>
</mml:math>
<label>(4)</label>
</disp-formula>to reduce the number of independent variables. The terms <italic>&#x3b1;</italic>, <italic>&#x3c4;</italic>, <italic>U</italic>, <italic>p</italic>, and <italic>&#x3c7;</italic> are the non-dimensional variables of area, time, velocity, pressure, and position, respectively (<xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>; <xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>). The dimensional wave speed and tube length are <inline-formula id="inf65">
<mml:math id="m65">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>w</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>c</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and <italic>L</italic>, respectively.</p>
<p>Using the above, the mass conservation, momentum conservation, and tube law equations can be written as<disp-formula id="e5">
<mml:math id="m5">
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2b;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>U</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x3d;</mml:mo>
<mml:mi>&#x3f5;</mml:mi>
<mml:msub>
<mml:mrow>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>,</mml:mo>
</mml:math>
<label>(5)</label>
</disp-formula>
<disp-formula id="e6">
<mml:math id="m6">
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>U</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>U</mml:mi>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>U</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>&#x3c8;</mml:mi>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>&#x3b2;</mml:mi>
<mml:mfrac>
<mml:mrow>
<mml:mi>U</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
<mml:mo>,</mml:mo>
<mml:mspace width="2em"/>
<mml:mtext>and</mml:mtext>
</mml:math>
<label>(6)</label>
</disp-formula>
<disp-formula id="e7">
<mml:math id="m7">
<mml:mi>p</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3b7;</mml:mi>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>U</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>,</mml:mo>
</mml:math>
<label>(7)</label>
</disp-formula>respectively. The terms <inline-formula id="inf1">
<mml:math id="m8">
<mml:mi>&#x3c8;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>K</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>/</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>&#x3c1;</mml:mi>
<mml:msup>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>w</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>c</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> and <italic>&#x3b2;</italic> &#x3d; 8<italic>&#x3c0;&#x3bc;L</italic>/(<italic>&#x3c1;A</italic>
<sub>
<italic>o</italic>
</sub>
<inline-formula id="inf36">
<mml:math id="m36">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>w</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>c</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) are non-dimensional stiffness and viscosity parameters, respectively. Notice the we introduce a smoothing term <inline-formula id="inf2">
<mml:math id="m9">
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>&#x3f5;</mml:mi>
<mml:msub>
<mml:mrow>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
<mml:mo>/</mml:mo>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> to the right-hand side of Eq. <xref ref-type="disp-formula" rid="e5">5</xref> which improves convergence speed and reduces computational time (<xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>; <xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>). Additionally, we introduced a damping term <inline-formula id="inf3">
<mml:math id="m10">
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>&#x3b7;</mml:mi>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>U</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> to the pressure Eq. <xref ref-type="disp-formula" rid="e7">7</xref> which helps in regularizing the system, thus stabilizing the numerical solution. The non-dimensional damping parameter <italic>&#x3b7;</italic> is defined by <italic>&#x3b7;</italic> &#x3d; (<italic>Y</italic>
<inline-formula id="inf30">
<mml:math id="m30">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>w</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>c</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>
<italic>A</italic>
<sub>
<italic>o</italic>
</sub>)/(<italic>K</italic>
<sub>
<italic>e</italic>
</sub>
<italic>L</italic>), where <italic>Y</italic> is the damping coefficient (<xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>; <xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>).</p>
</sec>
<sec id="s2-3">
<title>2.3 Peristaltic wave input and active relaxation</title>
<p>The activation function (<italic>&#x3b8;</italic>) can take different forms, and implementing it as described in <xref ref-type="sec" rid="s2-1">Section 2.1</xref> is a common approach when the external activation pressure at a specific location varies sinusoidally with time. As discussed in <xref ref-type="bibr" rid="B13">Elisha et al. (2022a)</xref>, the <italic>&#x3b8;</italic> pattern chosen for the model in this study aims to mimic clinical observations of esophageal secondary peristalsis reported by <xref ref-type="bibr" rid="B16">Goyal and Chaudhury (2008)</xref> and <xref ref-type="bibr" rid="B12">Crist et al. (1984)</xref>. When the FLIP bag does not pass through the sphincter, we define the activation function as simply a traveling sinusoidal wave with constant amplitude, wavelength and wave speed of the form<disp-formula id="e8">
<mml:math id="m11">
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:mfenced open="{" close="">
<mml:mrow>
<mml:mtable class="cases">
<mml:mtr>
<mml:mtd columnalign="left">
<mml:mn>1</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>c</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:mfenced>
<mml:mfenced open="[" close="]">
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mspace width="0.3333em"/>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>sin</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mn>2</mml:mn>
<mml:mi>&#x3c0;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mtext>w</mml:mtext>
</mml:mrow>
</mml:mfrac>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x2b;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>3</mml:mn>
<mml:mi>&#x3c0;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
</mml:mfenced>
<mml:mo>,</mml:mo>
<mml:mspace width="1em"/>
</mml:mtd>
<mml:mtd columnalign="left">
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mtext>w</mml:mtext>
<mml:mo>&#x2264;</mml:mo>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>&#x2264;</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mtd>
</mml:mtr>
<mml:mtr>
<mml:mtd columnalign="left">
<mml:mn>1</mml:mn>
<mml:mo>,</mml:mo>
<mml:mspace width="1em"/>
</mml:mtd>
<mml:mtd columnalign="left">
<mml:mtext>otherwise,</mml:mtext>
</mml:mtd>
</mml:mtr>
</mml:mtable>
</mml:mrow>
</mml:mfenced>
</mml:math>
<label>(8)</label>
</disp-formula>where w is the non-dimensional width of the peristaltic wave (dimensional width/<italic>L</italic>) and <italic>&#x3b8;</italic>
<sub>
<italic>c</italic>
</sub> is the maximum contraction strength (wave amplitude &#x3d; <italic>&#x3b8;</italic>
<sub>
<italic>c</italic>
</sub>) (<xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>; <xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>). <xref ref-type="fig" rid="F3">Figure 3A</xref> presents <italic>&#x3b8;</italic>
<sub>
<italic>p</italic>
</sub>(<italic>&#x3c7;</italic>, <italic>&#x3c4;</italic>) at five consecutive time instants. Given that an average esophageal peristaltic wave is about 3&#x2013;4&#xa0;cm wide, w &#x3d; .25 for a 16&#xa0;cm bag and w &#x3d; .75 for a 4&#xa0;cm bag. In the activation function presented in <xref ref-type="fig" rid="F3">Figure 3A</xref>, w &#x3d; .25.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Activation functions <bold>(A)</bold> <italic>&#x3b8;</italic>
<sub>
<italic>p</italic>
</sub> and <bold>(B)</bold> <italic>&#x3b8;</italic>
<sub>sup</sub> <bold>(B)</bold> plotted as a function of <italic>&#x3c7;</italic> at five consecutive time instants.</p>
</caption>
<graphic xlink:href="fphys-13-1066351-g003.tif"/>
</fig>
<p>For the scenario where the FLIP bag passes through the LES, the activation function is defined as a superposition of <italic>&#x3b8;</italic>
<sub>
<italic>p</italic>
</sub>(<italic>&#x3c7;</italic>, <italic>&#x3c4;</italic>) with <italic>&#x3b8;</italic>
<sub>LES</sub>(<italic>&#x3c7;</italic>, <italic>&#x3c4;</italic>), where <italic>&#x3b8;</italic>
<sub>LES</sub>(<italic>&#x3c7;</italic>, <italic>&#x3c4;</italic>) is responsible for the initial tone and relaxation of the LES, such that<disp-formula id="e9">
<mml:math id="m12">
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mtext>sup</mml:mtext>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x2b;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mtext>LES</mml:mtext>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>.</mml:mo>
</mml:math>
<label>(9)</label>
</disp-formula>The function <italic>&#x3b8;</italic>
<sub>LES</sub>(<italic>&#x3c7;</italic>, <italic>&#x3c4;</italic>) is defined by<disp-formula id="e10">
<mml:math id="m13">
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mtext>LES</mml:mtext>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:mfenced open="{" close="">
<mml:mrow>
<mml:mtable class="cases">
<mml:mtr>
<mml:mtd columnalign="left">
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:mfrac>
<mml:mfenced open="[" close="]">
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mspace width="0.3333em"/>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>sin</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mn>2</mml:mn>
<mml:mi>&#x3c0;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mtext>w</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mtext>LES</mml:mtext>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x2b;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>3</mml:mn>
<mml:mi>&#x3c0;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
</mml:mfenced>
<mml:mo>,</mml:mo>
<mml:mspace width="1em"/>
</mml:mtd>
<mml:mtd columnalign="left">
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2264;</mml:mo>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>&#x2264;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mtd>
</mml:mtr>
<mml:mtr>
<mml:mtd columnalign="left">
<mml:mn>0</mml:mn>
<mml:mo>,</mml:mo>
<mml:mspace width="1em"/>
</mml:mtd>
<mml:mtd columnalign="left">
<mml:mtext>otherwise,</mml:mtext>
</mml:mtd>
</mml:mtr>
</mml:mtable>
</mml:mrow>
</mml:mfenced>
</mml:math>
<label>(10)</label>
</disp-formula>where <italic>&#x3b8;</italic>
<sub>
<italic>r</italic>
</sub> is the LES tone, w<sub>LES</sub> is the non-dimensional width of the LES, <italic>&#x3c7;</italic>
<sub>1</sub> and <italic>&#x3c7;</italic>
<sub>2</sub> are the boundaries of the LES segment (<italic>&#x3c7;</italic>
<sub>2</sub> &#x3e; <italic>&#x3c7;</italic>
<sub>1</sub> and w<sub>LES</sub> &#x3d; <italic>&#x3c7;</italic>
<sub>2</sub>&#x2212;<italic>&#x3c7;</italic>
<sub>1</sub>), and<disp-formula id="e11">
<mml:math id="m14">
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:mfenced open="{" close="">
<mml:mrow>
<mml:mtable class="cases">
<mml:mtr>
<mml:mtd columnalign="left">
<mml:mn>1</mml:mn>
<mml:mo>,</mml:mo>
<mml:mspace width="1em"/>
</mml:mtd>
<mml:mtd columnalign="left">
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>&#x2264;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mtd>
</mml:mtr>
<mml:mtr>
<mml:mtd columnalign="left">
<mml:mn>1</mml:mn>
<mml:mo>&#x2b;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>&#x2b;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>m</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfenced>
<mml:mo>,</mml:mo>
<mml:mspace width="1em"/>
</mml:mtd>
<mml:mtd columnalign="left">
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3c;</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>&#x2264;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>m</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mtd>
</mml:mtr>
<mml:mtr>
<mml:mtd columnalign="left">
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:mo>,</mml:mo>
<mml:mspace width="1em"/>
</mml:mtd>
<mml:mtd columnalign="left">
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>m</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3c;</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>.</mml:mo>
</mml:mtd>
</mml:mtr>
</mml:mtable>
</mml:mrow>
</mml:mfenced>
</mml:math>
<label>(11)</label>
</disp-formula>In the equation above, <italic>&#x3c4;</italic>
<sub>
<italic>i</italic>
</sub> and <italic>&#x3c4;</italic>
<sub>
<italic>m</italic>
</sub> are time instants, where <italic>&#x3c4;</italic>
<sub>
<italic>i</italic>
</sub> marks the beginning of LES relaxation and <italic>&#x3c4;</italic>
<sub>
<italic>m</italic>
</sub> marks the end of the relaxation process (<xref ref-type="bibr" rid="B14">Elisha et al., 2021</xref>).</p>
</sec>
<sec id="s2-4">
<title>2.4 Initial and boundary conditions</title>
<p>At <italic>&#x3c4;</italic> &#x3d; 0, the fluid inside the tube is at rest, thus, its velocity (<italic>U</italic>) is equal to zero for all <italic>&#x3c7;</italic> (<xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>; <xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>). Additionally, it implies that the pressure in the tube is uniform (typically positive), which according to the tube law indicates that <italic>&#x3b1;</italic>/<italic>&#x3b8;</italic> (at <italic>&#x3c4;</italic> &#x3d; 0) is a constant (&#x3d; <italic>S</italic>
<sub>IC</sub>). Consequently, the initial condition can be written as<disp-formula id="e12">
<mml:math id="m15">
<mml:mi>U</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
<mml:mspace width="2em"/>
<mml:mspace width="2em"/>
<mml:mi>&#x3b1;</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>S</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mtext>IC</mml:mtext>
</mml:mrow>
</mml:msub>
<mml:mi>&#x3b8;</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:mfenced>
<mml:mo>.</mml:mo>
</mml:math>
<label>(12)</label>
</disp-formula>The velocity boundary condition is simply<disp-formula id="e13">
<mml:math id="m16">
<mml:mi>U</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
<mml:mspace width="2em"/>
<mml:mtext>and</mml:mtext>
<mml:mspace width="2em"/>
<mml:mi>U</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
<mml:mo>,</mml:mo>
</mml:math>
<label>(13)</label>
</disp-formula>since the tube is closed at both ends. The boundary condition for <italic>&#x3b1;</italic> is not as straightforward, but can be derived by plugging Eq. <xref ref-type="disp-formula" rid="e7">7</xref> and the velocity condition in Eq. <xref ref-type="disp-formula" rid="e13">13</xref> into Eq. <xref ref-type="disp-formula" rid="e6">6</xref>, which yields<disp-formula id="e14">
<mml:math id="m17">
<mml:msub>
<mml:mrow>
<mml:mfenced open="" close="|">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
<mml:mspace width="2em"/>
<mml:mi mathvariant="normal">a</mml:mi>
<mml:mi mathvariant="normal">n</mml:mi>
<mml:mi mathvariant="normal">d</mml:mi>
<mml:mspace width="2em"/>
<mml:msub>
<mml:mrow>
<mml:mfenced open="" close="|">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
<mml:mo>,</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
<mml:mo>.</mml:mo>
</mml:math>
<label>(14)</label>
</disp-formula>This condition is constructed by assuming that <italic>&#x3b7;</italic> &#x2248; 0. However, as explained by <xref ref-type="bibr" rid="B4">Acharya et al. (2021c)</xref>, the effects due to this damping at the boundary are negligible for small <italic>&#x3b7;</italic>.</p>
</sec>
<sec id="s2-5">
<title>2.5 Numerical implementation</title>
<p>The system is solved using the MATLAB <inline-formula id="inf4">
<mml:math id="m18">
<mml:mi mathvariant="monospace">p</mml:mi>
<mml:mi mathvariant="monospace">d</mml:mi>
<mml:mi mathvariant="monospace">e</mml:mi>
<mml:mi mathvariant="monospace">p</mml:mi>
<mml:mi mathvariant="monospace">e</mml:mi>
</mml:math>
</inline-formula> function. The numerical solution and the 1D simplification of peristaltic flow presented in this report was validated in <xref ref-type="bibr" rid="B4">Acharya et al. (2021c)</xref>, where they compared the 1D simulation results with an equivalent 3D immersed boundary simulation (<xref ref-type="bibr" rid="B41">Peskin, 2002</xref>).</p>
<p>In previous studies, a large range of possible values for the different parameters were examined to conduct a parametric study. For example, although typical clinical values correspond to small <italic>&#x3b2;</italic> (order 1) and large <italic>&#x3c8;</italic> (order 10<sup>3</sup>), analyzing simulations only within this range means only capturing scenarios in which viscous effects are negligible. Therefore, larger <italic>&#x3b2;</italic> and smaller <italic>&#x3c8;</italic> were also considered (<xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>; <xref ref-type="bibr" rid="B14">Elisha et al., 2021</xref>; <xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>). However, based of the findings summarized in <xref ref-type="bibr" rid="B13">Elisha et al. (2022a)</xref> and <xref ref-type="bibr" rid="B14">Elisha et al. (2021)</xref>, we choose to focus on simulations with parameter values listed in <xref ref-type="table" rid="T1">Table 1</xref>.</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>List of non-dimensional parameters.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Symbol</th>
<th align="left">Values</th>
<th align="left">Definition</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">
<inline-formula id="inf103">
<mml:math id="m110">
<mml:mrow>
<mml:mi>&#x3b2;</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td align="left">100</td>
<td align="left">Dimensionless strength of viscous effects (inverse of Reynolds number)</td>
</tr>
<tr>
<td align="left">
<italic>&#x3c8;</italic>
</td>
<td align="left">100, 2400</td>
<td align="left">Dimensionless rigidity of the elastic tube (inverse of Cauchy number)</td>
</tr>
<tr>
<td align="left">(<italic>&#x3c4;</italic>
<sub>
<italic>m</italic>
</sub>&#x2212;<italic>&#x3c4;</italic>
<sub>
<italic>i</italic>
</sub>)</td>
<td align="left">0.6</td>
<td align="left">Dimensionless LES relaxation time</td>
</tr>
<tr>
<td align="left">
<italic>&#x3b8;</italic>
<sub>
<italic>c</italic>
</sub>
</td>
<td align="left">0.2</td>
<td align="left">Peristaltic contraction strength</td>
</tr>
<tr>
<td align="left">
<italic>&#x3b8;</italic>
<sub>
<italic>r</italic>
</sub>
</td>
<td align="left">0.2</td>
<td align="left">LES contraction strength</td>
</tr>
<tr>
<td align="left">w</td>
<td align="left">0.25, 0.75</td>
<td align="left">Width of peristaltic wave</td>
</tr>
<tr>
<td align="left">w<sub>LES</sub>
</td>
<td align="left">0.25</td>
<td align="left">LES width</td>
</tr>
<tr>
<td align="left">
<italic>S</italic>
<sub>IC</sub>
</td>
<td align="left">2.0</td>
<td align="left">Constant area that depends on the volume of the bag (<italic>&#x3b1;</italic>(<italic>&#x3c4;</italic> &#x3d; 0)/<italic>&#x3b8;</italic>(<italic>&#x3c4;</italic> &#x3d; 0))</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
</sec>
<sec sec-type="results|discussion" id="s3">
<title>3 Results and discussion</title>
<p>Clinical data reveal that the P-CSA hysteresis loop during a single contraction cycle at a location within the esophageal body recorded by a FLIP device results a horizontal loop shape (<xref ref-type="fig" rid="F2">Figure 2</xref>). To explain the underlying mechanisms of this contraction pattern by analyzing the different phases of these loops, we simulated different contraction cycles, as described in the previous section. In this section, we display and discuss the simulation results by plotting the P-CSA hysteresis for different scenarios. We focus on the horizontal loop orientation obtained at the esophageal body using a 16&#xa0;cm FLIP.</p>
<p>
<xref ref-type="fig" rid="F4">Figure 4</xref> presents the results of a simulation of an esophageal contraction cycle using a 16&#xa0;cm long FLIP which does not pass through the LES. The activation function is <italic>&#x3b8;</italic>
<sub>
<italic>p</italic>
</sub> with the input parameters listed in <xref ref-type="table" rid="T1">Table 1</xref>, w &#x3d; .25, and <italic>&#x3c8;</italic> &#x3d; 2400. The resulting tube shape at seven consecutive time instants are presented on the right and the location where the esophagus body loop is plotted is marked <italic>&#x3c7;</italic> &#x3d; <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>. The P-CSA loop at that location is plotted on the top left, and the pressure and CSA as a function of time are plotted on the bottom left. As the figure shows, a horizontal loop emerges.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Simulation results for a single contraction cycle with muscle activity defined by a traveling peristaltic wave (<italic>&#x3b8;</italic>
<sub>
<italic>p</italic>
</sub>). Top left: P-CSA hysteresis loop at <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>. Bottom left: P and CSA vs. time at <italic>&#x3c7;</italic> &#x3d; <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>. Right: tube shape at seven consecutive instants, ordered chronologically.</p>
</caption>
<graphic xlink:href="fphys-13-1066351-g004.tif"/>
</fig>
<p>As in the prior clinical analysis by <xref ref-type="bibr" rid="B19">Gregersen et al. (2011)</xref>, we divide the loop into phases <bold>(a&#x2013;e)</bold> (<xref ref-type="fig" rid="F4">Figure 4</xref>), which will help us understand the underlying mechanics causing the horizontal loop shape. To explain the different phases, we use the diagram in <xref ref-type="fig" rid="F5">Figure 5</xref>. The diagram presents the shape of the elastic tube at two time instants during a contraction cycle. In the simulation, the wave travels from left to right (proximal to distal). The P-CSA loop is plotted (<xref ref-type="fig" rid="F4">Figure 4</xref>) at the point <italic>&#x3c7;</italic> &#x3d; <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>, which is static. Point <italic>&#x3c7;</italic> &#x3d; <italic>c</italic> is where the maximum contraction of the advancing wave takes place (<italic>&#x3b8;</italic> &#x3d; <italic>&#x3b8;</italic>
<sub>
<italic>c</italic>
</sub>), and it moves with time. Regions 1 and 2 refer to the regions distal and proximal to the contraction, respectively.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Two instants showing the corresponding tube shapes from the same simulation. The locations of point <italic>&#x3c7;</italic> &#x3d; <italic>c</italic>, regions 1 and 2, and how they change over time are depicted. P-CSA is plotted at <italic>&#x3c7;</italic> &#x3d; <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> and its location does not change with time.</p>
</caption>
<graphic xlink:href="fphys-13-1066351-g005.tif"/>
</fig>
<p>As the peristalsis wave travels down the deformable tube, it pushes the fluid forward, such that the CSA, <italic>A</italic>
<sub>1</sub>, at region 1 is greater than the CSA, <italic>A</italic>
<sub>2</sub>, at region 2 (<xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>; <xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>). Therefore, the pressure, <italic>p</italic>
<sub>1</sub>, at region 1 is also greater than the pressure, <italic>p</italic>
<sub>2</sub>, at region 2. The minimum CSA, <italic>A</italic>
<sub>
<italic>c</italic>
</sub>, is at <italic>&#x3c7;</italic> &#x3d; <italic>c</italic>. Thus, when <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> is distal to the contraction, <inline-formula id="inf5">
<mml:math id="m19">
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2248;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
</mml:math>
</inline-formula>, and when <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> is proximal to the contraction, <inline-formula id="inf6">
<mml:math id="m20">
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2248;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msub>
</mml:math>
</inline-formula>, where <inline-formula id="inf7">
<mml:math id="m21">
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:math>
</inline-formula> is the pressure at <italic>&#x3c7;</italic> &#x3d; <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>.</p>
<p>The tube shape and the relation between <italic>A</italic>
<sub>1</sub>, <italic>A</italic>
<sub>2</sub>, and <italic>A</italic>
<sub>
<italic>c</italic>
</sub> were described by in our prior work (<xref ref-type="bibr" rid="B4">Acharya et al., 2021c</xref>; <xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>). As the advancing contraction wave travels down the deformable tube, a competition between the elastic forces generated due to deformation of the tube wall and resistance to flow through the narrowest part of the contraction is created. When tube stiffness is high and fluid viscosity is relatively low, the tube wall resists deformation and forces the fluid that was displaced by the peristaltic wave to flow back through the contraction. In this scenario, the energy that is required to expand the tube walls is greater than the energy required to overcome viscous resistance across the contraction. Yet, <italic>A</italic>
<sub>1</sub> &#x3e; <italic>A</italic>
<sub>2</sub>, even if the difference between the two is small. When tube stiffness is relatively low and fluid viscosity is relatively high, an opposite phenomenon occurs. In this scenario, the resistance to flow is high, and therefore it is favorable for the tube wall at region 1 to expand and accommodate for the displaced fluid. In this second scenario, <italic>A</italic>
<sub>1</sub> is much greater than <italic>A</italic>
<sub>2</sub>. With the above understanding, the different phases, as marked in <xref ref-type="fig" rid="F4">Figure 4</xref> are discussed next.<list list-type="simple">
<list-item>
<p>(a) As the contraction cycle starts, the peristaltic wave pushes the fluid forward, increasing the pressure distal to the contraction, which is also where point <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> is located (<xref ref-type="bibr" rid="B13">Elisha et al., 2022a</xref>). Because fluid is displaced, CSA also increases at <italic>&#x3c7;</italic> &#x3d; <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>, alongside pressure. Due to the high tube stiffness (<italic>&#x3c8;</italic> &#x3d; 2400), the increase in pressure and CSA is small. When viscosity increases and/or tube stiffness decreases, it is favorable for the tube to expand and accommodate for the displaced fluid. Thus, the line in phase <bold>(a)</bold> is longer as the change in pressure and CSA is more prominent, as seen in <xref ref-type="fig" rid="F6">Figure 6A</xref>. <xref ref-type="fig" rid="F6">Figure 6B</xref> displays a visual representation of the affect wall stiffness and fluid viscosity have on the loop, and specifically stage <bold>(a)</bold>. Phase <bold>(a)</bold> in esophageal FLIP experiment is not perfectly vertical or isometric (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F4">4</xref>).</p>
</list-item>
<list-item>
<p>(b) When the contraction wave approaches <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>, the CSA at this location starts to decrease due to the contraction (i.e., <italic>&#x3b8;</italic>(<italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>, <italic>&#x3c4;</italic>) decreases). However, during phase <bold>(b)</bold> point <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> is still distal to the minimum area at <italic>c</italic>, and <italic>&#x3b8;</italic>(<italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>, <italic>&#x3c4;</italic>) &#x3e; <italic>&#x3b8;</italic>
<sub>
<italic>c</italic>
</sub>. Thus, <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> is still part of region 1 (<xref ref-type="fig" rid="F5">Figure 5</xref>) where the pressure is approximately uniform at high wall stiffness and low fluid viscosity. This is because, in this case, the dynamic pressure gradients (pressure changes due to fluid motion) are not dominant in the momentum equation. Consequently, although CSA decreases, pressure remains approximately constant <inline-formula id="inf8">
<mml:math id="m22">
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2248;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> in phase <bold>(a)</bold>.</p>
</list-item>
</list>
</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>P-CSA plots obtained from three different contraction cycle simulations. Input parameters are as listed in <xref ref-type="table" rid="T1">Table 1</xref> and <italic>&#x3c8;</italic> &#x3d; 100. <bold>(A, B)</bold> The FLIP bag does not pass through the LES, w &#x3d; .25, <bold>(C)</bold> the FLIP bag passes through the LES, w &#x3d; .25, and <bold>(D)</bold> simulation results for a short FLIP bag, w &#x3d; .75.</p>
</caption>
<graphic xlink:href="fphys-13-1066351-g006.tif"/>
</fig>
<p>Dynamic pressure gradients do become relevant for low tube stiffness or high viscosity (to overcome fluid friction). In this case, pressure gradients develop within region 1 (<xref ref-type="fig" rid="F5">Figure 5</xref>) and one can see that, although minor compared to phase <bold>(a)</bold>, <inline-formula id="inf9">
<mml:math id="m23">
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:math>
</inline-formula> increases slightly during phase <bold>(b)</bold> (<xref ref-type="fig" rid="F6">Figure 6A</xref>). However, this scenario is not expected in clinical FLIP data as the esophagus stiffness is relatively high and fluid (saline) viscosity is low.<list list-type="simple">
<list-item>
<p>(c) In this phase, point <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> transitions from being proximal to being distal to the contraction (point <italic>c</italic>). At the middle of phase <bold>(c)</bold>, <italic>&#x3b8;</italic>(<italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>, <italic>&#x3c4;</italic>) &#x3d; <italic>&#x3b8;</italic>
<sub>
<italic>c</italic>
</sub> and CSA at <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> is minimum. Around the minimum area the viscous resistance for the fluid to flow from region 1 to region 2 is maximum. The pressure gradient across the minimum area provides the force necessary to overcome the viscous resistance. Thus, <inline-formula id="inf10">
<mml:math id="m24">
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:math>
</inline-formula> decreases from <inline-formula id="inf11">
<mml:math id="m25">
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2248;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
</mml:math>
</inline-formula> to <inline-formula id="inf12">
<mml:math id="m26">
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2248;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msub>
</mml:math>
</inline-formula>. Pressure drops faster than CSA changes in phase <bold>(c)</bold>, so this transition occurs at almost constant CSA.</p>
</list-item>
<list-item>
<p>(d) As the contraction wave exits location <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>, <italic>&#x3b8;</italic>(<italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>, <italic>&#x3c4;</italic>) increases, which implies that CSA increases. However, <italic>&#x3c7;</italic> &#x3d; <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> is proximal to the contraction and in region 2 (<xref ref-type="fig" rid="F5">Figure 5</xref>). For reasons similar to those discussed in phase <bold>(b)</bold>, the pressure is almost uniform in region 2. Consequently, <inline-formula id="inf13">
<mml:math id="m27">
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2248;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msub>
</mml:math>
</inline-formula> and phase <bold>(d)</bold> takes place at constant pressure. Note that in some clinical contraction cycles, such as the one plotted in <xref ref-type="fig" rid="F2">Figure 2C</xref>, phase <bold>(d)</bold> is less horizontal, and pressure decreases as CSA increases. This is because, in contrast to the activation function defined in the simulations, the contraction strength in the actual esophagus is not constant, and may decrease throughout the contraction cycle. Hence, the muscle activation which pressurizes the tube decreases, which slightly reduces the pressure in the tube.</p>
</list-item>
<list-item>
<p>(e) The constant pressure during phase <bold>(d)</bold> is lower than the initial pressure. In phase <bold>(e)</bold>, the pressure at <italic>&#x3c7;</italic> &#x3d; <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> increases back to the initial pressure. As the contraction wave reaches the closed distal end, and eventually exits the domain, it allows more back-flow, causing the displaced fluid to flow upstream. This enhanced back-flow increases the pressure at point <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>, as the tube returns to its initial state. Note that in clinical data, the contraction is a repetitive process, meaning that as the advancing contraction wave exits at the distal end of the tube, another peristaltic wave enters the domain at the proximal end (<xref ref-type="bibr" rid="B9">Carlson et al., 2020</xref>). Given this set up, it is hard to separate phases <bold>(a)</bold> and <bold>(e)</bold>, and the loop looks like one continuous process.</p>
</list-item>
</list>
</p>
<p>An additional complication is introduced when the FLIP bag is placed such that it crosses the LES. As the peristaltic contraction cycle starts, (phase <bold>(a)</bold>), the LES muscle begins to relax, as illustrated by the activation function in <xref ref-type="fig" rid="F3">Figure 3B</xref>. Thus, the pressure in the tube is controlled by LES tone and the peristaltic contraction, each mechanism affecting the pressure at <italic>&#x3c7;</italic> &#x3d; <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> differently. Peristaltic wave increases pressure distal of the contraction. Sphincter relaxation leads to pressure drop. <xref ref-type="fig" rid="F6">Figure 6C</xref> presents the resulting P-CSA loop of such a simulation. As it turns out, although both mechanisms are present and cause different outcomes in pressure, the resulting loop has the same horizontal pattern. Most importantly, the pressure at point <italic>&#x3c7;</italic> &#x3d; <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> during phase <bold>(a)</bold> increases. The reason for that was explained in a prior work (<xref ref-type="bibr" rid="B14">Elisha et al., 2021</xref>), where the P-CSA hysteresis loop at the LES was plotted. Their study revealed that pressure and CSA at the LES increase and decrease together. That is, as the LES opens, the pressure at the LES increases. While originally counter intuitive, this P-CSA relation was explained by <xref ref-type="bibr" rid="B15">Elisha et al. (2022b)</xref>. The LES opening is a superposition of two mechanisms; neurogenic mediated relaxation of the LES muscle, and peristaltic contraction that causes pressurized distention. Thus, although the LES opens, which in an isolated case would reduce the pressure in region 1, the pressure increase from the peristaltic contraction dominates.</p>
<p>With this understanding in mind, the parallel between the horizontal loops in <xref ref-type="fig" rid="F6">Figures 6A, C</xref> is clear. In phase <bold>(a)</bold>, as the peristaltic wave travels down the deformable tube, the pressure and therefore the CSA increases distal to the contraction. Although the LES opens, the pressure rise from the traveling contraction dominates such that the pressure increases in phase <bold>(a)</bold>. Note that this pressure increase is not as high as in the case where the FLIP does not pass through the LES (in <xref ref-type="fig" rid="F6">Figure 6A</xref>).</p>
<p>By the time the contraction wave reaches point <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub>, marking the beginning of phase <bold>(b)</bold>, the LES is fully open and remains open for the rest of the cycle. Hence, phases <bold>(b)</bold>, <bold>(c)</bold>, <bold>(d)</bold> are analogous to the ones described for <xref ref-type="fig" rid="F4">Figure 4</xref>.</p>
<p>Lastly, note that the P-CSA loop plotted by <xref ref-type="bibr" rid="B19">Gregersen et al. (2011)</xref> and presented in <xref ref-type="fig" rid="F2">Figure 2A</xref> has a slightly different shape than the remaining clinical cases presented in <xref ref-type="fig" rid="F2">Figure 2</xref>. This loop does not have a well defined phase <bold>(a)</bold>. Since the FLIP length is the main parameter that differentiates the case in <xref ref-type="fig" rid="F2">Figure 2A</xref> from the rest, we hypothesize that the FLIP length causes this difference. To test this hypothesis, we simulate flow inside a short FLIP placed in the esophagus by changing the contraction width (w) from .25 (as in the case in <xref ref-type="fig" rid="F6">Figure 6A</xref>) to w &#x3d; .75. The P-CSA loop from this simulation is displayed in <xref ref-type="fig" rid="F6">Figure 6D</xref>. It is seen that decreasing the tube length conserves the general horizontal orientation of the loop but eliminates the original phase <bold>(a)</bold>. The resulting loop has a more drop-like shape, similar to the corresponding clinical loop by <xref ref-type="bibr" rid="B19">Gregersen et al. (2011)</xref>. The reason for that is simple: the wave hardly travels outside point <italic>&#x3c7;</italic>
<sub>
<italic>o</italic>
</sub> because the width of the contraction is almost equal to the width of the FLIP bag.</p>
</sec>
<sec sec-type="conclusion" id="s4">
<title>4 Conclusion</title>
<p>The goal of this study was to provide a mechanistic understanding of the P-CSA loops within the esophageal body. We examined the P-CSA hysteresis loop within the esophageal body obtained from clinical FLIP testing of various configurations. The considered cases were 1) 16-cm long FLIP bag placed inside the esophagus but did not pass through the LES, 2) 16-cm long FLIP bag which crossed the LES, and 3) an experimental setup reported by <xref ref-type="bibr" rid="B19">Gregersen et al. (2011)</xref>, in which a 4-cm long FLIP bag was placed in the esophageal body, above the LES. The clinical P-CSA plots revealed a horizontal loop shape.</p>
<p>Similar to cardiovascular analyses, we divided the P-CSA loop into phases. However, we aimed to offer a new mechanics-based understanding of the different phases in the P-CSA loop within the esophageal body. To obtain this understanding, we simulated flow inside a FLIP device placed inside the esophagus lumen. This gave us a closer look into the esophageal mechanism at each time instant. This information allowed us to develop a clear view of the phases of peristaltic contraction inside the FLIP. We concluded that the horizontal loop pattern within the esophagus body and the phases are a product of different mechanical conditions (muscle contraction, boundary condition, and geometric configuration) rather than any inherently different function of the muscle itself.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s5">
<title>Data availability statement</title>
<p>The raw data supporting the conclusion of this article will be made available by the authors upon request, without undue reservation.</p>
</sec>
<sec id="s6">
<title>Ethics statement</title>
<p>The studies involving human participants were reviewed and approved by Northwestern University Institutional Review Board. The patients/participants provided their written informed consent to participate in this study and were paid for their participation.</p>
</sec>
<sec id="s7">
<title>Author contributions</title>
<p>GE wrote the main manuscript text and prepared all the figures; GE and SH wrote the code; NP, GE, and SH developed the mathematical formulation; DC contributed to data acquisition; GE, SH, DC, PK, JP, and NP interpreted results of calculations; PK, JP, and NP contributed to obtaining funding, critical revision of the manuscript and final approval.</p>
</sec>
<sec id="s8">
<title>Funding</title>
<p>This work was funded by the National Institute of Diabetes and Digestive and Kidney Diseases R01- DK079902 and P01-DK117824, and National Science Foundation Grants OAC 1450374 and OAC 1931372. Their support is greatly appreciated.</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of interest</title>
<p>PK and JP hold shared intellectual property rights and ownership surrounding FLIP panometry systems, methods, and apparatus with Medtronic Inc. DC: Medtronic (Speaking, Consulting) PK: Ironwood (Consulting), Reckitt (Consulting), Johnson \&#x26; Johnson (Consulting) JP: Crospon, Inc. (stock options), Given Imaging (Consultant, Grant, Speaking), Sandhill Scientific (Consulting, Speaking), Takeda (Speaking), Astra Zeneca (Speaking), Medtronic (Speaking, Consulting), Torax (Speaking, Consulting), Ironwood (Consulting), Impleo (Grant).</p>
<p>The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Acharya</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Halder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<etal/>
</person-group> (<year>2021a</year>). <article-title>Assessment of esophageal body peristaltic work using functional lumen imaging probe panometry</article-title>. <source>Am. J. Physiology-Gastrointestinal Liver Physiology</source> <volume>320</volume>, <fpage>G217</fpage>&#x2013;<lpage>G226</lpage>. <pub-id pub-id-type="doi">10.1152/ajpgi.00324.2020</pub-id>
</citation>
</ref>
<ref id="B2">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Acharya</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Halder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<etal/>
</person-group> (<year>2021b</year>). <article-title>Estimation of mechanical work done to open the esophagogastric junction using functional lumen imaging probe panometry</article-title>. <source>Am. J. Physiology-Gastrointestinal Liver Physiology</source> <volume>320</volume>, <fpage>G780</fpage>&#x2013;<lpage>G790</lpage>. <pub-id pub-id-type="doi">10.1152/ajpgi.00032.2021</pub-id>
</citation>
</ref>
<ref id="B3">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Acharya</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Halder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<name>
<surname>Patankar</surname>
<given-names>N. A.</given-names>
</name>
</person-group> (<year>2022</year>). <article-title>A fully resolved multiphysics model of gastric peristalsis and bolus emptying in the upper gastrointestinal tract</article-title>. <source>Comput. Biol. Med.</source> <volume>143</volume>, <fpage>104948</fpage>. <pub-id pub-id-type="doi">10.1016/j.compbiomed.2021.104948</pub-id>
</citation>
</ref>
<ref id="B4">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Acharya</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Halder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<etal/>
</person-group> (<year>2021c</year>). <article-title>Pumping patterns and work done during peristalsis in finite-length elastic tubes</article-title>. <source>J. Biomechanical Eng.</source> <volume>143</volume>, <fpage>071001</fpage>. <pub-id pub-id-type="doi">10.1115/1.4050284</pub-id>
</citation>
</ref>
<ref id="B5">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Aziz</surname>
<given-names>Q.</given-names>
</name>
<name>
<surname>Fass</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Gyawali</surname>
<given-names>C. P.</given-names>
</name>
<name>
<surname>Miwa</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<name>
<surname>Zerbib</surname>
<given-names>F.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Esophageal disorders</article-title>. <source>Gastroenterology</source> <volume>150</volume>, <fpage>1368</fpage>&#x2013;<lpage>1379</lpage>. <pub-id pub-id-type="doi">10.1053/j.gastro.2016.02.012</pub-id>
</citation>
</ref>
<ref id="B6">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bringley</surname>
<given-names>T. T.</given-names>
</name>
<name>
<surname>Childress</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Vandenberghe</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>An experimental investigation and a simple model of a valveless pump</article-title>. <source>Phys. Fluids</source> <volume>20</volume>, <fpage>033602</fpage>. <pub-id pub-id-type="doi">10.1063/1.2890790</pub-id>
</citation>
</ref>
<ref id="B7">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Gyawali</surname>
<given-names>C. P.</given-names>
</name>
<name>
<surname>Khan</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>YadlapatiChen</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Chokshi</surname>
<given-names>R. V.</given-names>
</name>
<etal/>
</person-group> (<year>2021</year>). <article-title>Classifying esophageal motility by flip panometry: A study of 722 subjects with manometry</article-title>. <source>Am. J. Gastroenterology</source> <volume>116</volume>, <fpage>2357</fpage>&#x2013;<lpage>2366</lpage>. <pub-id pub-id-type="doi">10.14309/ajg.0000000000001532</pub-id>
</citation>
</ref>
<ref id="B8">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Lin</surname>
<given-names>Z.</given-names>
</name>
<name>
<surname>Hirano</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Gonsalves</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Listernick</surname>
<given-names>Z.</given-names>
</name>
<etal/>
</person-group> (<year>2016</year>). <article-title>Evaluation of esophageal motility utilizing the functional lumen imaging probe</article-title>. <source>Am. J. Gastroenterology</source> <volume>111</volume>, <fpage>1726</fpage>&#x2013;<lpage>1735</lpage>. <pub-id pub-id-type="doi">10.1038/ajg.2016.454</pub-id>
</citation>
</ref>
<ref id="B9">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Masihi</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Acharya</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Baumann</surname>
<given-names>A. J.</given-names>
</name>
<name>
<surname>Donnan</surname>
<given-names>E. N.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>Repetitive antegrade contraction: A novel response to sustained esophageal distension is modulated by cholinergic influence</article-title>. <source>Am. J. Physiology-Gastrointestinal Liver Physiology</source> <volume>319</volume>, <fpage>G696</fpage>&#x2013;<lpage>G702</lpage>. <pub-id pub-id-type="doi">10.1152/ajpgi.00305.2020</pub-id>
</citation>
</ref>
<ref id="B10">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Lin</surname>
<given-names>Z.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Sternbach</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Donnan</surname>
<given-names>E. N.</given-names>
</name>
<name>
<surname>Friesen</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2015</year>). <article-title>The functional lumen imaging probe detects esophageal contractility not observed with manometry in patients with achalasia</article-title>. <source>Gastroenterology</source> <volume>149</volume>, <fpage>1742</fpage>&#x2013;<lpage>1751</lpage>. <pub-id pub-id-type="doi">10.1053/j.gastro.2015.08.005</pub-id>
</citation>
</ref>
<ref id="B11">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Clarke</surname>
<given-names>J. O.</given-names>
</name>
<name>
<surname>Ahuja</surname>
<given-names>N. K.</given-names>
</name>
<name>
<surname>Fernandez-Becker</surname>
<given-names>N. Q.</given-names>
</name>
<name>
<surname>Gregersen</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Kamal</surname>
<given-names>A. N.</given-names>
</name>
<name>
<surname>Khan</surname>
<given-names>A.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>The functional lumen imaging probe in gastrointestinal disorders: The past, present, and future</article-title>. <source>Ann. N. Y. Acad. Sci.</source> <volume>1482</volume>, <fpage>16</fpage>&#x2013;<lpage>25</lpage>. <pub-id pub-id-type="doi">10.1111/nyas.14463</pub-id>
</citation>
</ref>
<ref id="B12">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Crist</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Gidda</surname>
<given-names>J. S.</given-names>
</name>
<name>
<surname>Goyal</surname>
<given-names>R. K.</given-names>
</name>
</person-group> (<year>1984</year>). <article-title>Intramural mechanism of esophageal peristalsis: Roles of cholinergic and noncholinergic nerves</article-title>. <source>Proc. Natl. Acad. Sci. U. S. A.</source> <volume>81</volume>, <fpage>3595</fpage>&#x2013;<lpage>3599</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.81.11.3595</pub-id>
</citation>
</ref>
<ref id="B13">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Elisha</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Acharya</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Halder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<etal/>
</person-group> (<year>2022a</year>). <article-title>Peristaltic regimes in esophageal transport</article-title>. <source>Biomechanics Model. Mechanobiol.</source> <pub-id pub-id-type="doi">10.1007/s10237-022-01625-x</pub-id>
</citation>
</ref>
<ref id="B14">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Elisha</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Halder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Acharya</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<etal/>
</person-group> (<year>2021</year>). <source>A mechanics-based perspective on the function of the esophagogastric junction during functional luminal imaging probe manometry</source>. <comment>(preprint)</comment>.</citation>
</ref>
<ref id="B15">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Elisha</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Halder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<etal/>
</person-group> (<year>2022b</year>). <source>A mechanics&#x2013;based perspective on the function of human sphincters during functional luminal imaging probe manometry</source>. <comment>(preprint)</comment>. <pub-id pub-id-type="doi">10.48550/arXiv.2209.08419</pub-id>
</citation>
</ref>
<ref id="B16">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Goyal</surname>
<given-names>R. K.</given-names>
</name>
<name>
<surname>Chaudhury</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>Physiology of normal esophageal motility</article-title>. <source>J. Clin. gastroenterology</source> <volume>42</volume>, <fpage>610</fpage>&#x2013;<lpage>619</lpage>. <pub-id pub-id-type="doi">10.1097/MCG.0b013e31816b444d</pub-id>
</citation>
</ref>
<ref id="B17">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gregersen</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Liao</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Pedersen</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Drewes</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>A new method for evaluation of intestinal muscle contraction properties: Studies in normal subjects and in patients with systemic sclerosis</article-title>. <source>Neurogastroenterol. Motil.</source> <volume>19</volume>, <fpage>11</fpage>&#x2013;<lpage>19</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-2982.2006.00837.x</pub-id>
</citation>
</ref>
<ref id="B18">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gregersen</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Lo</surname>
<given-names>K. M.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>What is the future of impedance planimetry in gastroenterology?</article-title> <source>Neurogastroenterol. Motil.</source> <volume>24</volume>, <fpage>166</fpage>&#x2013;<lpage>181</lpage>. <pub-id pub-id-type="doi">10.5056/jnm18013</pub-id>
</citation>
</ref>
<ref id="B19">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gregersen</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Villadsen</surname>
<given-names>G. E.</given-names>
</name>
<name>
<surname>Liao</surname>
<given-names>D.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Mechanical characteristics of distension-evoked peristaltic contractions in the esophagus of systemic sclerosis patients</article-title>. <source>Dig. Dis. Sci.</source> <volume>56</volume>, <fpage>3559</fpage>&#x2013;<lpage>3568</lpage>. <pub-id pub-id-type="doi">10.1007/s10620-011-1777-9</pub-id>
</citation>
</ref>
<ref id="B20">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Halder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Acharya</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Campagna</surname>
<given-names>R. A. J.</given-names>
</name>
<name>
<surname>Triggs</surname>
<given-names>J. R.</given-names>
</name>
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<etal/>
</person-group> (<year>2022a</year>). <article-title>Myotomy technique and esophageal contractility impact blown-out myotomy formation in achalasia: An <italic>in silico</italic> investigation</article-title>. <source>Am. J. Physiology-Gastrointestinal Liver Physiology</source> <volume>322</volume>, <fpage>G500</fpage>&#x2013;<lpage>G512</lpage>. <pub-id pub-id-type="doi">10.1152/ajpgi.00281.2021</pub-id>
</citation>
</ref>
<ref id="B21">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Halder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Acharya</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<name>
<surname>Patankar</surname>
<given-names>N. A.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Mechanics informed fluoroscopy of esophageal transport</article-title>. <source>Biomechanics Model. Mechanobiol.</source> <volume>20</volume>, <fpage>925</fpage>&#x2013;<lpage>940</lpage>. <pub-id pub-id-type="doi">10.1007/s10237-021-01420-0</pub-id>
</citation>
</ref>
<ref id="B22">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Halder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Johnson</surname>
<given-names>E. M.</given-names>
</name>
<name>
<surname>Yamasaki</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Markl</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<etal/>
</person-group> (<year>2022b</year>). <source>Mri-mech: Mechanics-informed mri to estimate esophageal health</source>. <comment>(preprint)</comment>. <pub-id pub-id-type="doi">10.48550/arXiv.2209.07492</pub-id>
</citation>
</ref>
<ref id="B23">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Halder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Yamasaki</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Acharya</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Elisha</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<etal/>
</person-group> (<year>2022c</year>). <article-title>Virtual disease landscape using mechanics-informed machine learning: Application to esophageal disorders</article-title>. <source>Artif. Intell. Med.</source> <volume>134</volume>, <fpage>102435</fpage>. <pub-id pub-id-type="doi">10.1016/j.artmed.2022.102435</pub-id>
</citation>
</ref>
<ref id="B24">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Jain</surname>
<given-names>A. S.</given-names>
</name>
<name>
<surname>Carlson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Triggs</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Tye</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Campagna</surname>
<given-names>R.</given-names>
</name>
<etal/>
</person-group> (<year>2019</year>). <article-title>Esophagogastric junction distensibility on functional lumen imaging probe topography predicts treatment response in achalasia&#x2014;Anatomy matters</article-title>. <source>Am. J. Gastroenterology</source> <volume>114</volume>, <fpage>1455</fpage>&#x2013;<lpage>1463</lpage>. <pub-id pub-id-type="doi">10.14309/ajg.0000000000000137</pub-id>
</citation>
</ref>
<ref id="B25">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>Clinical practice. Gastroesophageal reflux disease</article-title>. <source>N. Engl. J. Med.</source> <volume>359</volume>, <fpage>1700</fpage>&#x2013;<lpage>1707</lpage>. <pub-id pub-id-type="doi">10.1056/NEJMcp0804684</pub-id>
</citation>
</ref>
<ref id="B26">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Griffith</surname>
<given-names>B. E.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Patankar</surname>
<given-names>N. A.</given-names>
</name>
</person-group> (<year>2017a</year>). <article-title>A continuum mechanics-based musculo-mechanical model for esophageal transport</article-title>. <source>J. Comput. Phys.</source> <volume>348</volume>, <fpage>433</fpage>&#x2013;<lpage>459</lpage>. <pub-id pub-id-type="doi">10.1016/j.jcp.2017.07.025</pub-id>
</citation>
</ref>
<ref id="B27">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Patankar</surname>
<given-names>N. A.</given-names>
</name>
</person-group> (<year>2017b</year>). <article-title>Could the peristaltic transition zone be caused by non-uniform esophageal muscle fiber architecture? A simulation study</article-title>. <source>Neurogastroenterol. Motil.</source> <volume>29</volume>, <fpage>e13022</fpage>. <pub-id pub-id-type="doi">10.1111/nmo.13022</pub-id>
</citation>
</ref>
<ref id="B28">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Patankar</surname>
<given-names>N. A.</given-names>
</name>
</person-group> (<year>2017c</year>). <article-title>Simulation studies of the role of esophageal mucosa in bolus transport</article-title>. <source>Biomechanics Model. Mechanobiol.</source> <volume>16</volume>, <fpage>1001</fpage>&#x2013;<lpage>1009</lpage>. <pub-id pub-id-type="doi">10.1007/s10237-016-0867-1</pub-id>
</citation>
</ref>
<ref id="B29">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kou</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Patankar</surname>
<given-names>N. A.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Studies of abnormalities of the lower esophageal sphincter during esophageal emptying based on a fully coupled bolus&#x2013;esophageal&#x2013;gastric model</article-title>. <source>Biomechanics Model. Mechanobiol.</source> <volume>17</volume>, <fpage>1069</fpage>&#x2013;<lpage>1082</lpage>. <pub-id pub-id-type="doi">10.1007/s10237-018-1014-y</pub-id>
</citation>
</ref>
<ref id="B30">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kwiatek</surname>
<given-names>M. A.</given-names>
</name>
<name>
<surname>Hirano</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Rothe</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Luger</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Pandolfino</surname>
<given-names>J. E.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Mechanical properties of the esophagus in eosinophilic esophagitis</article-title>. <source>Gastroenterology</source> <volume>140</volume>, <fpage>82</fpage>&#x2013;<lpage>90</lpage>. <pub-id pub-id-type="doi">10.1053/j.gastro.2010.09.037</pub-id>
</citation>
</ref>
<ref id="B31">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Leibbrandt</surname>
<given-names>R. E.</given-names>
</name>
<name>
<surname>Dinning</surname>
<given-names>P. G.</given-names>
</name>
<name>
<surname>Costa</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Cock</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Wiklendt</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>G.</given-names>
</name>
<etal/>
</person-group> (<year>2016</year>). <article-title>Characterization of esophageal physiology using mechanical state analysis</article-title>. <source>Front. Syst. Neurosci.</source> <volume>10</volume>, <fpage>10</fpage>. <pub-id pub-id-type="doi">10.3389/fnsys.2016.00010</pub-id>
</citation>
</ref>
<ref id="B32">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liao</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Krarup</surname>
<given-names>A. L.</given-names>
</name>
<name>
<surname>Lundager</surname>
<given-names>F. H.</given-names>
</name>
<name>
<surname>Drewes</surname>
<given-names>A. M.</given-names>
</name>
<name>
<surname>Gregersen</surname>
<given-names>H.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Quantitative differences between primary and secondary peristaltic contractions of the esophagus</article-title>. <source>Dig. Dis. Sci.</source> <volume>59</volume>, <fpage>1810</fpage>&#x2013;<lpage>1816</lpage>. <pub-id pub-id-type="doi">10.1007/s10620-014-3070-1</pub-id>
</citation>
</ref>
<ref id="B33">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liao</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Mark</surname>
<given-names>E. B.</given-names>
</name>
<name>
<surname>Zhao</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Drewes</surname>
<given-names>A. M.</given-names>
</name>
<name>
<surname>Brock</surname>
<given-names>C.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Modeling and measurement of the mechano-physiological function of the gastrointestinal organs</article-title>. <source>Physiol. Meas.</source> <volume>41</volume>, <fpage>114004</fpage>. <pub-id pub-id-type="doi">10.1088/1361-6579/abc40a</pub-id>
</citation>
</ref>
<ref id="B34">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liao</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Villadsen</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Gregersen</surname>
<given-names>H.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Distension-evoked motility analysis in human esophagus</article-title>. <source>Neurogastroenterol. Motil.</source> <volume>25</volume>, <fpage>407</fpage>&#x2013;<lpage>412</lpage>. <pub-id pub-id-type="doi">10.1111/nmo.12081</pub-id>
</citation>
</ref>
<ref id="B35">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lin</surname>
<given-names>Z.</given-names>
</name>
<name>
<surname>Kahrilas</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Xiao</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Nicodeme</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Gonsalves</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Hirano</surname>
<given-names>I.</given-names>
</name>
<etal/>
</person-group> (<year>2013</year>). <article-title>Functional luminal imaging probe topography: An improved method for characterizing esophageal distensibility in eosinophilic esophagitis</article-title>. <source>Ther. Adv. Gastroenterology</source> <volume>6</volume>, <fpage>97</fpage>&#x2013;<lpage>107</lpage>. <pub-id pub-id-type="doi">10.1177/1756283X12470017</pub-id>
</citation>
</ref>
<ref id="B36">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lottrup</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Gregersen</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Liao</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Fynne</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Fr&#xf8;kj&#xe6;r</surname>
<given-names>J. B.</given-names>
</name>
<name>
<surname>Krogh</surname>
<given-names>K.</given-names>
</name>
<etal/>
</person-group> (<year>2015</year>). <article-title>Functional lumen imaging of the gastrointestinal tract</article-title>. <source>J. gastroenterology</source> <volume>50</volume>, <fpage>1005</fpage>&#x2013;<lpage>1016</lpage>. <pub-id pub-id-type="doi">10.1007/s00535-015-1087-7</pub-id>
</citation>
</ref>
<ref id="B37">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Manopoulos</surname>
<given-names>C. G.</given-names>
</name>
<name>
<surname>Mathioulakis</surname>
<given-names>D. S.</given-names>
</name>
<name>
<surname>Tsangaris</surname>
<given-names>S. G.</given-names>
</name>
</person-group> (<year>2006</year>). <article-title>One-dimensional model of valveless pumping in a closed loop and a numerical solution</article-title>. <source>Phys. Fluids</source> <volume>18</volume>, <fpage>017106</fpage>. <pub-id pub-id-type="doi">10.1063/1.2165780</pub-id>
</citation>
</ref>
<ref id="B38">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Moonen</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Boeckxstaens</surname>
<given-names>G.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Measuring mechanical properties of the esophageal wall using impedance planimetry</article-title>. <source>Gastrointest. Endosc. Clin.</source> <volume>24</volume>, <fpage>607</fpage>&#x2013;<lpage>618</lpage>. <pub-id pub-id-type="doi">10.1016/j.giec.2014.06.001</pub-id>
</citation>
</ref>
<ref id="B39">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Omari</surname>
<given-names>T. I.</given-names>
</name>
<name>
<surname>Wiklendt</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Dinning</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Costa</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Rommel</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Cock</surname>
<given-names>C.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Upper esophageal sphincter mechanical states analysis: A novel methodology to describe ues relaxation and opening</article-title>. <source>Front. Syst. Neurosci.</source> <volume>8</volume>, <fpage>241</fpage>. <pub-id pub-id-type="doi">10.3389/fnsys.2014.00241</pub-id>
</citation>
</ref>
<ref id="B40">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ottesen</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2003</year>). <article-title>Valveless pumping in a fluid-filled closed elastic tube-system: One-dimensional theory with experimental validation</article-title>. <source>J. Math. Biol.</source> <volume>46</volume>, <fpage>309</fpage>&#x2013;<lpage>332</lpage>. <pub-id pub-id-type="doi">10.1007/s00285-002-0179-1</pub-id>
</citation>
</ref>
<ref id="B41">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Peskin</surname>
<given-names>C. S.</given-names>
</name>
</person-group> (<year>2002</year>). <article-title>The immersed boundary method</article-title>. <source>Acta Numer.</source> <volume>11</volume>, <fpage>479</fpage>&#x2013;<lpage>517</lpage>. <pub-id pub-id-type="doi">10.1017/S0962492902000077</pub-id>
</citation>
</ref>
<ref id="B42">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Regan</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Walshe</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Rommel</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Tack</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>McMahon</surname>
<given-names>B. P.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>New measures of upper esophageal sphincter distensibility and opening patterns during swallowing in healthy subjects using EndoFLIP</article-title>. <source>Neurogastroenterol. Motil.</source> <volume>25</volume>, <fpage>e25</fpage>&#x2013;<lpage>e34</lpage>. <pub-id pub-id-type="doi">10.1111/nmo.12041</pub-id>
</citation>
</ref>
<ref id="B43">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Shaheen</surname>
<given-names>N. J.</given-names>
</name>
<name>
<surname>Hansen</surname>
<given-names>R. A.</given-names>
</name>
<name>
<surname>Morgan</surname>
<given-names>D. R.</given-names>
</name>
<name>
<surname>Gangarosa</surname>
<given-names>L. M.</given-names>
</name>
<name>
<surname>Ringel</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Thiny</surname>
<given-names>M. T.</given-names>
</name>
<etal/>
</person-group> (<year>2010</year>). <article-title>The burden of gastrointestinal and liver diseases</article-title>. <source>Am. J. Gastroenterology</source> <volume>101</volume>, <fpage>2128</fpage>&#x2013;<lpage>2138</lpage>. <pub-id pub-id-type="doi">10.1111/j.1572-0241.2006.00723.x</pub-id>
</citation>
</ref>
<ref id="B44">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Villadsen</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Storkholm</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Zachariae</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Hendel</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Bendtsen</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Gregersen</surname>
<given-names>H.</given-names>
</name>
</person-group> (<year>2001</year>). <article-title>Oesophageal pressure&#x2013;cross-sectional area distributions and secondary peristalsis in relation to subclassification of systemic sclerosis</article-title>. <source>Neurogastroenterol. Motil.</source> <volume>13</volume>, <fpage>199</fpage>&#x2013;<lpage>210</lpage>. <pub-id pub-id-type="doi">10.1046/j.1365-2982.2001.00259.x</pub-id>
</citation>
</ref>
<ref id="B45">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Whittaker</surname>
<given-names>R. J.</given-names>
</name>
<name>
<surname>Heil</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Jensen</surname>
<given-names>O. E.</given-names>
</name>
<name>
<surname>Waters</surname>
<given-names>S. L.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>A rational derivation of a tube law from shell theory</article-title>. <source>Q. J. Mech. Appl. Math.</source> <volume>63</volume>, <fpage>465</fpage>&#x2013;<lpage>496</lpage>. <pub-id pub-id-type="doi">10.1093/qjmam/hbq020</pub-id>
</citation>
</ref>
<ref id="B46">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zifan</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Mittal</surname>
<given-names>R. K.</given-names>
</name>
<name>
<surname>Kunkel</surname>
<given-names>D. C.</given-names>
</name>
<name>
<surname>Swartz</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Barr</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Tuttle</surname>
<given-names>L. J.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Loop analysis of the anal sphincter complex in fecal incontinent patients using functional luminal imaging probe</article-title>. <source>Am. J. physiology Gastrointest. liver physiology</source> <volume>318</volume>, <fpage>G66</fpage>&#x2013;<lpage>G76</lpage>. <pub-id pub-id-type="doi">10.1152/ajpgi.00164.2019</pub-id>
</citation>
</ref>
</ref-list>
</back>
</article>