<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Physiol.</journal-id>
<journal-title>Frontiers in Physiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Physiol.</abbrev-journal-title>
<issn pub-type="epub">1664-042X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fphys.2016.00406</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Physiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Modeling Ca<sup>2&#x0002B;</sup>-Bound Troponin in Excitation Contraction Coupling</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Zot</surname> <given-names>Henry G.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/357748/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Hasbun</surname> <given-names>Javier E.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Biology, University of West Georgia</institution> <country>Carrollton, GA, USA</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Physics, University of West Georgia</institution> <country>Carrollton, GA, USA</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: P. Bryant Chase, Florida State University, USA</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Corrado Poggesi, University of Florence, Italy; John Jeshurun Michael, Cornell University, USA</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Henry G. Zot <email>hzot&#x00040;westga.edu</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Striated Muscle Physiology, a section of the journal Frontiers in Physiology</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>21</day>
<month>09</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="collection">
<year>2016</year>
</pub-date>
<volume>7</volume>
<elocation-id>406</elocation-id>
<history>
<date date-type="received">
<day>25</day>
<month>06</month>
<year>2016</year>
</date>
<date date-type="accepted">
<day>30</day>
<month>08</month>
<year>2016</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2016 Zot and Hasbun.</copyright-statement>
<copyright-year>2016</copyright-year>
<copyright-holder>Zot and Hasbun</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p>To explain disparate decay rates of cytosolic Ca<sup>2&#x0002B;</sup> and structural changes in the thin filaments during a twitch, we model the time course of Ca<sup>2&#x0002B;</sup>-bound troponin (Tn) resulting from the free Ca<sup>2&#x0002B;</sup> transient of fast skeletal muscle. In fibers stretched beyond overlap, the decay of Ca<sup>2&#x0002B;</sup> as measured by a change in fluo-3 fluorescence is significantly slower than the intensity decay of the meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection of Tn; this is not simply explained by considering only the Ca<sup>2&#x0002B;</sup> binding properties of Tn alone (Matsuo et al., <xref ref-type="bibr" rid="B23">2010</xref>). We apply a comprehensive model that includes the known Ca<sup>2&#x0002B;</sup> binding properties of Tn in the context of the thin filament with and without cycling crossbridges. Calculations based on the model predict that the transient of Ca<sup>2&#x0002B;</sup>-bound Tn correlates with either the fluo-3 time course in muscle with overlapping thin and thick filaments or the intensity of the meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection in overstretched muscle. Hence, cycling crossbridges delay the dissociation of Ca<sup>2&#x0002B;</sup> from Tn. Correlation with the fluo-3 fluorescence change is not causal given that the transient of Ca<sup>2&#x0002B;</sup>-bound Tn depends on sarcomere length, whereas the fluo-3 fluorescence change does not. Transient positions of tropomyosin calculated from the time course of Ca<sup>2&#x0002B;</sup>-bound Tn are in reasonable agreement with the transient of measured perturbations of the Tn repeat in overlap and non-overlap muscle preparations.</p></abstract>
<kwd-group>
<kwd>contraction</kwd>
<kwd>calcium</kwd>
<kwd>troponin</kwd>
<kwd>excitation</kwd>
<kwd>muscle</kwd>
<kwd>EC-coupling</kwd>
<kwd>model</kwd>
<kwd>kinetics</kwd>
</kwd-group>
<counts>
<fig-count count="7"/>
<table-count count="2"/>
<equation-count count="2"/>
<ref-count count="43"/>
<page-count count="10"/>
<word-count count="6804"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>During a twitch of striated muscle, the intracellular fluorescence probe fluo-3 reveals two types of calcium transients (Minta et al., <xref ref-type="bibr" rid="B26">1989</xref>). Owing to its high affinity for Ca<sup>2&#x0002B;</sup>, fluo-3 detects and contributes to a cytosolic pool of Ca<sup>2&#x0002B;</sup> that rises rapidly and persists longer than 150 ms after stimulation of frog striated muscle at 16&#x000B0;C (Harkins et al., <xref ref-type="bibr" rid="B16">1993</xref>; Caputo et al., <xref ref-type="bibr" rid="B9">1994</xref>; Matsuo et al., <xref ref-type="bibr" rid="B23">2010</xref>). The long decay time can be explained by Ca<sup>2&#x0002B;</sup> exchange with binding molecules in the cytosol, which may be immobilized molecules such as troponin (Tn) or diffusive molecules such as ATP and parvalbumin, during sequestration of Ca<sup>2&#x0002B;</sup> by the sarcoplasmic reticulum (Baylor and Hollingworth, <xref ref-type="bibr" rid="B3">2011</xref>). A transient of free Ca<sup>2&#x0002B;</sup>, well described by the low-affinity probe furaptra (Hollingworth et al., <xref ref-type="bibr" rid="B19">2009</xref>), can also be calculated from the fluo-3 record (Caputo et al., <xref ref-type="bibr" rid="B9">1994</xref>). The transient of free Ca<sup>2&#x0002B;</sup> rises to a peak in 5&#x02013;7 ms and decays to baseline in about 50 ms at 16&#x000B0;C (Konishi et al., <xref ref-type="bibr" rid="B21">1991</xref>; Hollingworth and Baylor, <xref ref-type="bibr" rid="B18">2013</xref>). This brief pulse of Ca<sup>2&#x0002B;</sup> produced by Ca<sup>2&#x0002B;</sup> sparks (Cannell et al., <xref ref-type="bibr" rid="B7">1995</xref>) constitutes the intracellular excitation signal for myofilament contraction (Baylor et al., <xref ref-type="bibr" rid="B4">2002</xref>; Baylor and Hollingworth, <xref ref-type="bibr" rid="B2">2007</xref>).</p>
<p>The Ca<sup>2&#x0002B;</sup> regulatory sites of Tn (Potter and Gergely, <xref ref-type="bibr" rid="B28">1975</xref>) mediate excitation contraction coupling (Robertson et al., <xref ref-type="bibr" rid="B29">1981</xref>). Based on the binding characteristics of purified Tn (Baylor and Hollingworth, <xref ref-type="bibr" rid="B1">1998</xref>), the decay of Ca<sup>2&#x0002B;</sup>-bound Tn is expected to follow the long process of fluo-3 decay (Matsuo and Yagi, <xref ref-type="bibr" rid="B24">2008</xref>). However, a simple Ca<sup>2&#x0002B;</sup> dissociation rate of Tn is difficult to reconcile with the modeling of the furaptra transient (Baylor et al., <xref ref-type="bibr" rid="B4">2002</xref>). In muscle preparations stretched to average sarcomere lengths of 2.8 and 4.0 &#x003BC;m (overlap and non-overlap preparations, respectively), decays of fluo-3 signals are remarkably similar, but, in the non-overlap preparation, the intensity of the meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection corresponding to the repeat of Tn in the thin filament decays significantly faster than the fluo-3 signal (Matsuo and Yagi, <xref ref-type="bibr" rid="B24">2008</xref>). If Ca<sup>2&#x0002B;</sup>-bound Tn is a function of the pool of Ca<sup>2&#x0002B;</sup> represented by the fluo-3 signal then a significant fraction of Tn remains in the Ca<sup>2&#x0002B;</sup>-bound state after the Tn-related structure fully relaxes (Matsuo and Yagi, <xref ref-type="bibr" rid="B24">2008</xref>). Our aim is to provide a theoretical framework for the alternative hypothesis, namely, the structure represented by the meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection has a direct relationship with Ca<sup>2&#x0002B;</sup>-bound Tn.</p>
<p>The properties of Ca<sup>2&#x0002B;</sup> binding to the regulatory sites of the C-subunit of Tn (TnC) depend on interactions of Tn with actin in a 7:1:1 molar complex of actin, tropomyosin (Tm), and Tn (regulated actin). Studies using both <sup>45</sup>Ca<sup>2&#x0002B;</sup> and fluorescence change techniques with native and covalently modified preparations, respectively, consistently demonstrate that the Ca<sup>2&#x0002B;</sup> affinity of regulated actin is substantially lower than the Ca<sup>2&#x0002B;</sup> affinity of isolated Tn (Wnuk et al., <xref ref-type="bibr" rid="B35">1984</xref>; Rosenfeld and Taylor, <xref ref-type="bibr" rid="B30">1987</xref>; Zot, H. G. and Potter, J. D., <xref ref-type="bibr" rid="B43">1987</xref>). Kinetic measurements of Ca<sup>2&#x0002B;</sup>-dependent fluorescence changes show slow and fast rates of Ca<sup>2&#x0002B;</sup> dissociation from regulated actin; the slow rate correlates with the Ca<sup>2&#x0002B;</sup> dissociation rate of isolated Tn, while the other rate is about 10-fold faster (Rosenfeld and Taylor, <xref ref-type="bibr" rid="B30">1987</xref>). Rigor myosin shifts the affinity of regulated actin (myosin:actin:Tm:Tn in a 7:7:1:1 complex with no ATP) to the higher Ca<sup>2&#x0002B;</sup> affinity of isolated Tn and reduces the kinetic measurement to one rate, which matches the slow rate of Ca<sup>2&#x0002B;</sup> dissociation (Rosenfeld and Taylor, <xref ref-type="bibr" rid="B30">1987</xref>). Tropomyosin can occupy three different positions relative to actin: blocking (<italic>B</italic>), central (<italic>C</italic>), and myosin dependent (<italic>M</italic>) positions. Tn in association with Tm can interact with actin only when Tm is in position <italic>B</italic> (Lehman et al., <xref ref-type="bibr" rid="B22">2000</xref>). A competition between the open conformation of TnC and actin for the same internal structure of Tn in position <italic>B</italic> (Gagn&#x000E9; et al., <xref ref-type="bibr" rid="B13">1995</xref>; Takeda et al., <xref ref-type="bibr" rid="B31">2003</xref>) could lower the apparent Ca<sup>2&#x0002B;</sup> affinity and increase the Ca<sup>2&#x0002B;</sup> off rate of Tn in position <italic>B</italic> by energy coupling. By the same energetic principle, when Tm is in either position <italic>C</italic> or <italic>M</italic> and Tn cannot interact with actin, the regulatory sites of TnC should have the higher Ca<sup>2&#x0002B;</sup> affinity and slower Ca<sup>2&#x0002B;</sup> off rate of isolated Tn.</p>
<p>Cooperative changes associated with Ca<sup>2&#x0002B;</sup> binding to TnC depend on not only the context of regulated actin but also the context of rigor and steady-state conditions. Although, some preparations of fluorescently modified TnC display cooperative Ca<sup>2&#x0002B;</sup>-dependent fluorescence changes (Grabarek et al., <xref ref-type="bibr" rid="B14">1983</xref>; Zot, H. G. and Potter, J. D., <xref ref-type="bibr" rid="B43">1987</xref>; Davis et al., <xref ref-type="bibr" rid="B10">2002</xref>), only a single class of non-interacting Ca<sup>2&#x0002B;</sup>-binding sites is found for the regulatory sites of native and fluorescently modified TnC in regulated actin by techniques using <sup>45</sup>Ca<sup>2&#x0002B;</sup> and fluorescence change, respectively (Wnuk et al., <xref ref-type="bibr" rid="B35">1984</xref>; Rosenfeld and Taylor, <xref ref-type="bibr" rid="B30">1987</xref>; Zot, H. G. and Potter, J. D., <xref ref-type="bibr" rid="B43">1987</xref>). Likewise, a non-cooperative fluorescence change in response to Ca<sup>2&#x0002B;</sup> is observed for regulated actin saturated with rigor myosin (Rosenfeld and Taylor, <xref ref-type="bibr" rid="B30">1987</xref>). However, in the presence of ATP, muscle fibers and myofibrils reconstituted with fluorescent TnC display steeply cooperative Ca<sup>2&#x0002B;</sup>-dependent activation and fluorescence changes (Zot et al., <xref ref-type="bibr" rid="B38">1986</xref>; Zot, A. S. and Potter, J. D., <xref ref-type="bibr" rid="B37">1987</xref>; Brandt and Poggesi, <xref ref-type="bibr" rid="B5">2014</xref>). Hence, cooperative Ca<sup>2&#x0002B;</sup> binding requires steady-state crossbridges.</p>
<p>Here we link the well-described transient of free Ca<sup>2&#x0002B;</sup> to a comprehensive model of contraction (Zot et al., <xref ref-type="bibr" rid="B42">2009</xref>). This model accounts for Ca<sup>2&#x0002B;</sup>-bound Tn in association with Tm in the three principle structural states of the thin filament (Lehman et al., <xref ref-type="bibr" rid="B22">2000</xref>). As with regulated actin, the muscle fiber is expected to display both slow and fast Ca<sup>2&#x0002B;</sup> dissociation rates, which should be evident in the decay rates of structural changes related to Tn and also depend on cycling crossbridges. We apply the model to transient changes in the fluo-3 fluorescence and meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection intensities measured in preparations of frog skeletal muscle at 16&#x000B0;C, with the sarcomere length maintained at overlap or non-overlap of myofilaments (Matsuo et al., <xref ref-type="bibr" rid="B23">2010</xref>), which promotes or prohibits cycling crossbridges, respectively. The model presented here predicts that Ca<sup>2&#x0002B;</sup>-bound Tn follows the slow decays of fluo-3 fluorescence and meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection intensities of the overlap preparation and only the faster decay of meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection intensity of the non-overlap preparation. The pool of Ca<sup>2&#x0002B;</sup> represented by the fluo-3 fluorescence intensity and Ca<sup>2&#x0002B;</sup>-bound Tn lack a predictable relationship.</p>
</sec>
<sec sec-type="materials and methods" id="s2">
<title>Materials and methods</title>
<sec>
<title>Description of model</title>
<p>The model we employ accounts for the relative distributions of thin filament states (Figure <xref ref-type="fig" rid="F1">1</xref>). The <italic>B, C</italic>, and <italic>M</italic> states of Tm refer to Tm&#x00027;s interactions with actin in these respective positions (Lehman et al., <xref ref-type="bibr" rid="B22">2000</xref>). State <italic>C</italic> is the equilibrium position (Phillips et al., <xref ref-type="bibr" rid="B27">1986</xref>; Lehman et al., <xref ref-type="bibr" rid="B22">2000</xref>), and states <italic>B</italic> and <italic>M</italic> are modeled as competing for Tm in state <italic>C</italic>. To stabilize the non-equilibrium positions <italic>B</italic> and <italic>M</italic>, Tm-bound Tn forms an interaction with actin (Greaser and Gergely, <xref ref-type="bibr" rid="B15">1973</xref>) in position <italic>B</italic>, and Tm forms a ternary complex with crossbridges and actin in position <italic>M</italic> (Eaton, <xref ref-type="bibr" rid="B11">1976</xref>; Tobacman and Butters, <xref ref-type="bibr" rid="B32">2000</xref>). The interaction of Tn in state <italic>B</italic> accounts for the states of Tn that are energetically coupled to the states of Tm. Movement of Tm away from <italic>B</italic> energetically uncouples Tn from possible interactions with actin (Figure <xref ref-type="fig" rid="F1">1</xref>).</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p><bold>Summary of model</bold>. The model consists of two subsystems that partially overlap. The states of Tm (blue) include central (<italic>C</italic>), myosin-dependent (<italic>M</italic>), and blocking (<italic>B</italic><sub><italic>i</italic></sub>, <italic>i</italic> &#x0003D; 1&#x02013;3). States of Tn (TnT, yellow; TnI, magenta; TnC, black-white) include energetically coupled (<italic>B</italic><sub><italic>i</italic></sub>) and uncoupled (<italic>T</italic><sub><italic>i</italic></sub>) states each having regulatory sites of TnC that can be Ca<sup>2&#x0002B;</sup>-free (<italic>i</italic> &#x0003D; 1; white), singly Ca<sup>2&#x0002B;</sup>-bound (<italic>i</italic> &#x0003D; 2; black), and doubly Ca<sup>2&#x0002B;</sup>-bound (<italic>i</italic> &#x0003D; 3; black). The diagram shows how Tn is isolated from a site of interaction with actin (gray oval) by the movement of Tm from position <italic>B</italic> to positions <italic>C</italic> and <italic>M</italic>. All constants depicted in the figure represent the ratio of component rate constants (Table <xref ref-type="table" rid="T1">1</xref>) used to calculate the relative abundance or probability of each state as a function of a transient change in calcium concentration.</p></caption>
<graphic xlink:href="fphys-07-00406-g0001.tif"/>
</fig>
<p>Coupled and uncoupled states of Tn are designated <italic>B</italic> and <italic>T</italic>, respectively (Figure <xref ref-type="fig" rid="F1">1</xref>). Calcium-dependent states of Tn are designated <italic>B</italic><sub><italic>i</italic></sub> and <italic>T</italic><sub><italic>i</italic></sub>, where <italic>i</italic> represents 1 (Ca<sup>2&#x0002B;</sup> free), 2 (singly bound), or 3 (doubly bound). Affinity for actin is progressively reduced as <italic>i</italic> increases. Based on conservation of the mass for two partially overlapping subsystems (Tm and Tn), <italic>B</italic> &#x0002B; <italic>C</italic> &#x0002B; <italic>M</italic> &#x0003D; 1 for Tm and <italic>B</italic> &#x0002B; <italic>T</italic> &#x0003D; 1 for Tn.</p>
<p>In the system we describe, <italic>M</italic> can arise by either rigor or cycling crossbridges, but cooperativity derives solely from cycling crossbridges, as seen in the records of Ca<sup>2&#x0002B;</sup> binding measurements. With overlapping thin and thick filaments and ATP, <italic>M</italic> is a state in constant flux (steady-state) rather than at equilibrium; this is readily observed by Ca<sup>2&#x0002B;</sup>-dependent <italic>in vitro</italic> sliding of regulated actin filaments. Steady-state cooperativity is achieved if crossbridge turn-over generates additional opportunities (second chances) for <italic>M</italic> formation (Zot et al., <xref ref-type="bibr" rid="B42">2009</xref>, <xref ref-type="bibr" rid="B40">2012</xref>). By analogy, the <italic>M</italic> state operates like a man whose feet are bound to a ceiling by adhesion: changing positions quickly relative to the rate of deadhesion improves the odds of remaining bound by re-establishing the initial binding conditions. A statistical treatment of a second chance mechanism applied to data from biological systems is available (Zot et al., <xref ref-type="bibr" rid="B41">2016a</xref>). In practice, a second chance mechanism is given in the following rate equation
<disp-formula id="E41"><label>(1)</label><mml:math id="M41"><mml:mrow><mml:mi>d</mml:mi><mml:mi>M</mml:mi><mml:mo>/</mml:mo><mml:mi>d</mml:mi><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:msubsup><mml:mi>K</mml:mi><mml:mn>0</mml:mn><mml:mo>&#x02032;</mml:mo></mml:msubsup><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>0</mml:mn></mml:mrow></mml:msub><mml:mi>C</mml:mi><mml:msup><mml:mrow><mml:mo stretchy='false'>(</mml:mo><mml:mn>1</mml:mn><mml:mo>+</mml:mo><mml:mo stretchy='false'>(</mml:mo><mml:mi>&#x003B1;</mml:mi><mml:mo>&#x02212;</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy='false'>)</mml:mo><mml:mi>M</mml:mi><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mi>n</mml:mi></mml:msup><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>0</mml:mn></mml:mrow></mml:msub><mml:mi>M</mml:mi></mml:mrow></mml:math></disp-formula>
where parameters <inline-formula><mml:math id="M2"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>, <italic>k</italic><sub>&#x02212;0</sub>, &#x003B1;, and <italic>n</italic> are derived elsewhere (Zot et al., <xref ref-type="bibr" rid="B42">2009</xref>, <xref ref-type="bibr" rid="B40">2012</xref>). The parameter &#x003B1; expresses second chance opportunities for reestablishing equilibrium before the decay of <italic>M</italic>. As steady-state or equilibrium approach, <italic>dM</italic>/<italic>dt</italic> &#x02192; 0. Because Equation (1) acts on the <italic>C</italic>-<italic>M</italic> transition (Figure <xref ref-type="fig" rid="F1">1</xref>), cooperativity does not directly involve Ca<sup>2&#x0002B;</sup> binding to Tn. Although, Equation (1) performs adequately, any logistic function operating on <italic>C</italic> can be compatible with our model.</p>
<p>As applied to transient and steady-state striated muscle regulation, the parameters of Equation (1) may have the following interpretations. The equilibrium potential of <italic>M</italic> as a function of the population of strong binding myosin at any moment of steady-state is expressed by <inline-formula><mml:math id="M3"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>. The forward rate of ensemble <italic>M</italic> formation is the product <inline-formula><mml:math id="M4"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula><italic>k</italic><sub>&#x02212;0</sub>. Ensemble size, <italic>n</italic>, expresses the number of Tm subunits acting in concert to form a ternary complex as described above. The orchestrating event could be a lateral stretch imposed on contiguous Tm subunits by an axial force acting on the thin filament (Zot et al., <xref ref-type="bibr" rid="B42">2009</xref>). The parameter &#x003B1; is an expression of the crossbridges poised to replace crossbridges disrupted by internal chemomechanical forces or by active sliding. The value of &#x003B1; may be related to the average number of crossbridges in a target zone (Tregear et al., <xref ref-type="bibr" rid="B33">2004</xref>), as has been described (Zot et al., <xref ref-type="bibr" rid="B42">2009</xref>). We give unit value to <inline-formula><mml:math id="M5"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> for simplicity and recycle previously discussed values for &#x003B1;, and <italic>n</italic> (Zot et al., <xref ref-type="bibr" rid="B42">2009</xref>; Table <xref ref-type="table" rid="T1">1</xref>) for consistency.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p><bold>Summary of standard conditions</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="center" colspan="2" style="border-bottom: thin solid #000000;"><bold>Steady-state constant</bold></th>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><bold>Component rate constant</bold></th>
</tr>
<tr>
<th/>
<th valign="top" align="center"><bold>Value used<xref ref-type="table-fn" rid="TN1"><sup>a</sup></xref></bold></th>
<th/>
<th valign="top" align="center"><bold>Value used</bold></th>
<th valign="top" align="left"><bold>Dimensions</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="M45"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">1</td>
<td valign="top" align="left"><inline-formula><mml:math id="M50"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> <italic>k</italic><sub>&#x02212;0</sub></td>
<td valign="top" align="center">50</td>
<td valign="top" align="left">s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left"><italic>k</italic><sub>&#x02212;0</sub></td>
<td valign="top" align="center">50</td>
<td valign="top" align="left">s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>K</italic><sub>1</sub></td>
<td valign="top" align="center">800</td>
<td valign="top" align="left"><italic>K</italic><sub>1</sub> <italic>k</italic><sub>&#x02212;1</sub></td>
<td valign="top" align="center">80,000</td>
<td valign="top" align="left">s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left"><italic>k</italic><sub>&#x02212;1</sub></td>
<td valign="top" align="center">100</td>
<td valign="top" align="left">s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>K</italic><sub>3</sub></td>
<td valign="top" align="center">80</td>
<td valign="top" align="left"><italic>K</italic><sub>3</sub> <italic>k</italic><sub>&#x02212;3</sub></td>
<td valign="top" align="center">8000</td>
<td valign="top" align="left">s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left"><italic>k</italic><sub>&#x02212;3</sub></td>
<td valign="top" align="center">100</td>
<td valign="top" align="left">s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>K</italic><sub>5</sub></td>
<td valign="top" align="center">8</td>
<td valign="top" align="left"><italic>K</italic><sub>5</sub> <italic>k</italic><sub>&#x02212;5</sub></td>
<td valign="top" align="center">800</td>
<td valign="top" align="left">s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left"><italic>k</italic><sub>&#x02212;5</sub></td>
<td valign="top" align="center">100</td>
<td valign="top" align="left">s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>K</italic><sub>2</sub></td>
<td valign="top" align="center">1.67</td>
<td valign="top" align="left"><italic>K</italic><sub>2</sub> <italic>k</italic><sub>&#x02212;2</sub></td>
<td valign="top" align="center">25</td>
<td valign="top" align="left">&#x003BC;M<sup>&#x02212;1</sup>s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left"><italic>k</italic><sub>&#x02212;2</sub></td>
<td valign="top" align="center">15</td>
<td valign="top" align="left">s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>K</italic><sub>4</sub></td>
<td valign="top" align="center">0.167</td>
<td valign="top" align="left"><italic>K</italic><sub>4</sub> <italic>k</italic><sub>&#x02212;4</sub></td>
<td valign="top" align="center">25</td>
<td valign="top" align="left">&#x003BC;M<sup>&#x02212;1</sup>s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left"><italic>k</italic><sub>&#x02212;4</sub></td>
<td valign="top" align="center">150</td>
<td valign="top" align="left">s<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>n</italic></td>
<td valign="top" align="center">3.25</td>
<td/>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">&#x003B1;</td>
<td valign="top" align="center">5</td>
<td/>
<td/>
<td/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TN1">
<label>a</label>
<p><italic>Shown previously to fit steady-state Ca<sup>2&#x0002B;</sup>-dependent tension of skinned fibers of fast twitch (Zot et al., <xref ref-type="bibr" rid="B42">2009</xref>) and slow twitch (Zot et al., <xref ref-type="bibr" rid="B39">2016b</xref>) muscle</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec>
<title>Computational methods</title>
<p>Transitions other than <italic>C-M</italic> are spontaneous processes governed by simple mass action (Figure <xref ref-type="fig" rid="F1">1</xref>). Although the model has eight states, only six are independent. If we choose to calculate states <italic>C</italic> and <italic>T</italic><sub>1</sub> by mass conservation (see above), the relative abundances or probabilities of the other six states (Figure <xref ref-type="fig" rid="F1">1</xref>) as a function of an independent calcium transient are calculated by solving a system of six ordinary differential equations (ODE), i.e., in addition to Equation (1), we have
<disp-formula id="E42"><mml:math id="M42"><mml:mtable columnalign='left'><mml:mtr><mml:mtd><mml:mi>d</mml:mi><mml:msub><mml:mi>B</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:mi>d</mml:mi><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msub><mml:mi>C</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>4</mml:mn></mml:mrow></mml:msub><mml:msub><mml:mi>B</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>&#x02212;</mml:mo><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>4</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>4</mml:mn></mml:mrow></mml:msub><mml:mo stretchy='false'>[</mml:mo><mml:mi>C</mml:mi><mml:msup><mml:mi>a</mml:mi><mml:mrow><mml:mn>2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup><mml:mo stretchy='false'>]</mml:mo></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:msub><mml:mi>B</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>;</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi>d</mml:mi><mml:msub><mml:mi>B</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:mi>d</mml:mi><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:msub><mml:mi>C</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>4</mml:mn></mml:mrow></mml:msub><mml:msub><mml:mi>B</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>4</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>4</mml:mn></mml:mrow></mml:msub><mml:mo stretchy='false'>[</mml:mo><mml:mi>C</mml:mi><mml:msup><mml:mi>a</mml:mi><mml:mrow><mml:mn>2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup><mml:mo stretchy='false'>]</mml:mo><mml:msub><mml:mi>B</mml:mi><mml:mn>1</mml:mn></mml:msub></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>4</mml:mn></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>4</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>4</mml:mn></mml:mrow></mml:msub><mml:mo stretchy='false'>[</mml:mo><mml:mi>C</mml:mi><mml:msup><mml:mi>a</mml:mi><mml:mrow><mml:mn>2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup><mml:mo stretchy='false'>]</mml:mo></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:msub><mml:mi>B</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>;</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi>d</mml:mi><mml:msub><mml:mi>B</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:mi>d</mml:mi><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>5</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>5</mml:mn></mml:mrow></mml:msub><mml:mi>C</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>4</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>4</mml:mn></mml:mrow></mml:msub><mml:mo stretchy='false'>[</mml:mo><mml:mi>C</mml:mi><mml:msup><mml:mi>a</mml:mi><mml:mrow><mml:mn>2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup><mml:mo stretchy='false'>]</mml:mo><mml:msub><mml:mi>B</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>&#x02212;</mml:mo><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>4</mml:mn></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>5</mml:mn></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:msub><mml:mi>B</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo>;</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi>d</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:mi>d</mml:mi><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msub><mml:mo stretchy='false'>[</mml:mo><mml:mi>C</mml:mi><mml:msup><mml:mi>a</mml:mi><mml:mrow><mml:mn>2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup><mml:mo stretchy='false'>]</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:msub><mml:msub><mml:mi>B</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msub><mml:msub><mml:mi>T</mml:mi><mml:mn>3</mml:mn></mml:msub></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msub><mml:mo stretchy='false'>[</mml:mo><mml:mi>C</mml:mi><mml:msup><mml:mi>a</mml:mi><mml:mrow><mml:mn>2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup><mml:mo stretchy='false'>]</mml:mo><mml:mo>+</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:msub><mml:mi>C</mml:mi></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>;</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi>d</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:mi>d</mml:mi><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msub><mml:mo stretchy='false'>[</mml:mo><mml:mi>C</mml:mi><mml:msup><mml:mi>a</mml:mi><mml:mrow><mml:mn>2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup><mml:mo stretchy='false'>]</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>5</mml:mn></mml:mrow></mml:msub><mml:msub><mml:mi>B</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo>&#x02212;</mml:mo><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>5</mml:mn></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>5</mml:mn></mml:mrow></mml:msub><mml:mi>C</mml:mi></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo>.</mml:mo></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula></p>
<p>This system of ODE is solved for each free Ca<sup>2&#x0002B;</sup> concentration of a given transient. The free Ca<sup>2&#x0002B;</sup> transient of a muscle fiber (Matsuo et al., <xref ref-type="bibr" rid="B23">2010</xref>) is reproduced by a linear rise from the origin to the peak (time to peak is 0.005 s), followed by an exponential decay (rate constant is 100 s<sup>&#x02212;1</sup>; Figure <xref ref-type="fig" rid="F2">2</xref>). We use the same Ca<sup>2&#x0002B;</sup> transient for all calculations as a control. Hence, the model varies only the contribution of crossbridges in fitting data from overlap and non-overlap preparations. A Matlab program is provided to reproduce calculations presented here (see <xref ref-type="supplementary-material" rid="SM1">Supplementary Materials</xref>).</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p><bold>Standard transient of free Ca<sup>2&#x0002B;</sup> and final steady-state conditions</bold>. Transient free Ca<sup>2&#x0002B;</sup> data (dots) reproduced from Matsuo et al. (<xref ref-type="bibr" rid="B23">2010</xref>) are fit empirically by a mathematical function (green). Inset, Steady-state activation (<italic>M</italic> state) is plotted as a function of free Ca<sup>2&#x0002B;</sup> concentration on absolute (purple) and normalized (black) scales. Adjusting steady-state constants (Table <xref ref-type="table" rid="T2">2</xref>) shifts the curves for activation laterally (&#x00394;<italic>x</italic><sub>ss</sub>). Predicted Ca<sup>2&#x0002B;</sup>-bound Tn curves (gold) that simulate no crossbridges (1 pt. line), saturating rigor crossbridges (3 pt. line), and cycling crossbridges (2 pt. gold line) are calculated with <inline-formula><mml:math id="M7"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> set to 0, 10<sup>6</sup>, and 1, respectively, under the standard equilibrium/steady-state conditions of Table <xref ref-type="table" rid="T1">1</xref>. Hill coefficients (Hill, <xref ref-type="bibr" rid="B17">1910</xref>) of unity are determined for curves representing no crossbridges and rigor crossbridges.</p></caption>
<graphic xlink:href="fphys-07-00406-g0002.tif"/>
</fig>
<p>Standard conditions refer to a set of constants governing steady-state potentials (upper case, &#x0201C;<italic>K</italic>&#x0201D;), &#x003B1;, and <italic>n</italic> that we hold constant (Table <xref ref-type="table" rid="T1">1</xref>). Thermodynamic principles dictate that <italic>K</italic><sub>1</sub>/<italic>K</italic><sub>3</sub> &#x0003D; <italic>K</italic><sub>3</sub>/<italic>K</italic><sub>5</sub> &#x0003D; <italic>K</italic><sub>2</sub>/<italic>K</italic><sub>4</sub>, which allows <inline-formula><mml:math id="M8"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula>, <italic>K</italic><sub>1</sub>, <italic>K</italic><sub>2</sub>, and <italic>K</italic><sub>4</sub> to be selected independently. The values used here for these four parameters, &#x003B1;, and <italic>n</italic> (Table <xref ref-type="table" rid="T1">1</xref>) are the same shown elsewhere to fit steady-state activation of skinned fibers of fast muscle (Zot et al., <xref ref-type="bibr" rid="B42">2009</xref>) and cardiac muscle (Zot et al., <xref ref-type="bibr" rid="B39">2016b</xref>) by Ca<sup>2&#x0002B;</sup>. Component rate constants (lower case, &#x0201C;<italic>k</italic>&#x0201D;) are varied to fit transient data. Slow and fast dissociation rates of Ca<sup>2&#x0002B;</sup> from Tn (<italic>k</italic><sub>&#x02212;2</sub> and <italic>k</italic><sub>&#x02212;4</sub>; Table <xref ref-type="table" rid="T1">1</xref>), are taken from Rosenfeld and Taylor (<xref ref-type="bibr" rid="B30">1987</xref>).</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec>
<title>Steady-state and equilibrium behavior of the model</title>
<p>Steady-state or equilibrium calculations are produced for standard conditions (Table <xref ref-type="table" rid="T1">1</xref>) by nullifying the system of ODE (cf. Matlab program in Zot et al., <xref ref-type="bibr" rid="B39">2016b</xref>). Calculated Ca<sup>2&#x0002B;</sup>-dependent activation curves on absolute and normalized scales (inset, Figure <xref ref-type="fig" rid="F2">2</xref>) reproduce fits of steady-state tension and ATPase data of diverse native and mutant protein preparations of fast skeletal and cardiac muscles (Zot et al., <xref ref-type="bibr" rid="B42">2009</xref>, <xref ref-type="bibr" rid="B39">2016b</xref>). To verify that the model reproduces established Ca<sup>2&#x0002B;</sup> binding properties of Tn, Ca<sup>2&#x0002B;</sup>-bound Tn (<italic>B</italic><sub>2</sub> &#x0002B; <italic>B</italic><sub>3</sub> &#x0002B; <italic>T</italic><sub>2</sub> &#x0002B; <italic>T</italic><sub>3</sub>) is calculated as a function of constant concentrations of Ca<sup>2&#x0002B;</sup>. With cycling crossbridges, the mathematical solution is a cooperative function of Ca<sup>2&#x0002B;</sup> (inset, Figure <xref ref-type="fig" rid="F2">2</xref>), which reproduces the distinctive binding-activation relationship observed previously with fluorescently labeled Tn in reconstituted myofibrils (Zot et al., <xref ref-type="bibr" rid="B38">1986</xref>; Zot, A. S. and Potter, J. D., <xref ref-type="bibr" rid="B37">1987</xref>; Brandt and Poggesi, <xref ref-type="bibr" rid="B5">2014</xref>). To model equilibrium achieved by non-overlap or rigor, <inline-formula><mml:math id="M9"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> is set either to zero or to a relatively large value (10<sup>6</sup>), respectively. Both solutions predict simple mass action (non-cooperative) calcium binding (inset, Figure <xref ref-type="fig" rid="F2">2</xref>), and both simulations reproduce published simple mass action Ca<sup>2&#x0002B;</sup> binding curves for regulated actin and regulated actin with rigor myosin binding, respectively (Rosenfeld and Taylor, <xref ref-type="bibr" rid="B30">1987</xref>). Hence, the model is able to reproduce cooperative and non-cooperative Ca<sup>2&#x0002B;</sup> binding measurements of both steady-state and equilibrium preparations, respectively.</p>
</sec>
<sec>
<title>Transient response with overlap</title>
<p>The transient of calcium-bound troponin, which is modeled as the sum of <italic>B</italic><sub>2</sub>, <italic>B</italic><sub>3</sub>, <italic>T</italic><sub>2</sub>, and <italic>T</italic><sub>3</sub>, is compared with the transient change measured by fluo-3 fluorescence (Matsuo et al., <xref ref-type="bibr" rid="B23">2010</xref>) in overlap muscle preparations. Rather than choosing parameters to fit the fluo-3 data, we fit tension data (Figure <xref ref-type="fig" rid="F3">3</xref>) from the same preparation with calculated value of <italic>M</italic> (Equation 1) by adjusting the rate constants (Table <xref ref-type="table" rid="T2">2</xref>) that comprise standard conditions (Table <xref ref-type="table" rid="T1">1</xref>). Decreasing <inline-formula><mml:math id="M10"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula><italic>k</italic><sub>&#x02212;0</sub> shifts the calculated tension transient rightward, and <italic>k</italic><sub>&#x02212;0</sub> is decreased in tandem to maintain constant <inline-formula><mml:math id="M11"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula>. The same constraint is used throughout to maintain standard conditions. Although adjusting either <inline-formula><mml:math id="M12"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula><italic>k</italic><sub>&#x02212;0</sub> or <italic>K</italic><sub>1</sub><italic>k</italic><sub>&#x02212;1</sub> changes the tension transient equivalently, using <inline-formula><mml:math id="M13"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula><italic>k</italic><sub>&#x02212;0</sub> for lateral adjustments and <italic>K</italic><sub>1</sub><italic>k</italic><sub>&#x02212;1</sub> for vertical adjustments yields the best shape of the tension transient relative to the data. Given the optimum fit of the tension data, the predicted Ca<sup>2&#x0002B;</sup>-bound Tn transient is seen to fit most of the fluo-3 fluorescent data (Figure <xref ref-type="fig" rid="F3">3</xref>). If we accept a slightly faster time to peak tension, the model predicts slower decay of Ca<sup>2&#x0002B;</sup>-bound Tn, which may better capture the entire trend of fluo-3 data (see <xref ref-type="supplementary-material" rid="SM1">Supplementary Materials</xref>).</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p><bold>Time courses of principle states of the thin filament with overlap</bold>. Plotted as a function of a pulse of free calcium (green) are calculated transients of states <italic>B</italic> (dark blue), <italic>C</italic> (red), and <italic>M</italic> (black). Total Ca<sup>2&#x0002B;</sup>-bound Tn (<italic>B</italic><sub>2</sub> &#x0002B; <italic>B</italic><sub>3</sub> &#x0002B; <italic>T</italic><sub>2</sub> &#x0002B; <italic>T</italic><sub>3</sub>; gold) is broken down into components, i.e., fast (<italic>B</italic><sub>2</sub> &#x0002B; <italic>B</italic><sub>3</sub>; blue) and slow (<italic>T</italic><sub>2</sub> &#x0002B; <italic>T</italic><sub>3</sub>; gray). Plotted on the same scale are measured tension (circles) and fluo-3 fluorescence (squares) transients of muscle fibers of average sarcomere length of 2.8 &#x003BC;m and stimulated by a single impulse (reproduced from Matsuo et al., <xref ref-type="bibr" rid="B23">2010</xref>). Adjustments in standard conditions (Table <xref ref-type="table" rid="T1">1</xref>) alter the width (&#x00394;<italic>x</italic><sub>M</sub>), height (&#x00394;<italic>y</italic><sub>M</sub>), and center of the <italic>M</italic> peak (O) as described in Table <xref ref-type="table" rid="T2">2</xref>.</p></caption>
<graphic xlink:href="fphys-07-00406-g0003.tif"/>
</fig>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p><bold>Response to adjustments of standard conditions</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Variable</bold></th>
<th valign="top" align="center"><bold>Figure</bold></th>
<th valign="top" align="left"><bold>Variable response</bold></th>
<th valign="top" align="left"><bold>Parameter adjustment</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">&#x00394;<italic>x</italic><sub>SS</sub></td>
<td valign="top" align="center">2</td>
<td valign="top" align="left">Lateral shift</td>
<td valign="top" align="left"><italic>K</italic><sub>0</sub>/<italic>K</italic><sub>1</sub></td>
</tr>
<tr>
<td valign="top" align="left">&#x00394;<italic>x</italic><sub>M</sub></td>
<td valign="top" align="center">3</td>
<td valign="top" align="left">Increase peak width</td>
<td valign="top" align="left">Decrease <inline-formula><mml:math id="M46"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> <italic>k</italic><sub>&#x02212;0</sub></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">Decrease <italic>K</italic><sub>1</sub> <italic>k</italic><sub>&#x02212;1</sub></td>
</tr>
<tr>
<td valign="top" align="left">&#x00394;<italic>y</italic><sub>M</sub></td>
<td valign="top" align="center">3</td>
<td valign="top" align="left">Increase peak height</td>
<td valign="top" align="left">Increase <inline-formula><mml:math id="M47"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> <italic>k</italic><sub>&#x02212;0</sub></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">Increase <italic>K</italic><sub>1</sub> <italic>k</italic><sub>&#x02212;1</sub></td>
</tr>
<tr>
<td valign="top" align="left">O</td>
<td valign="top" align="center">3</td>
<td valign="top" align="left">Right lateral shift</td>
<td valign="top" align="left">Decrease <inline-formula><mml:math id="M48"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> <italic>k</italic><sub>&#x02212;0</sub></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">Decrease <italic>K</italic><sub>1</sub> <italic>k</italic><sub>&#x02212;1</sub></td>
</tr>
<tr>
<td valign="top" align="left">&#x00394;<italic>x</italic><sub>CaB</sub></td>
<td valign="top" align="center">5</td>
<td valign="top" align="left">Leftward shift</td>
<td valign="top" align="left">Increase <italic>K</italic><sub>4</sub> <italic>k</italic><sub>&#x02212;4</sub></td>
</tr>
<tr>
<td valign="top" align="left">&#x00394;<italic>dif</italic><sub>C</sub></td>
<td valign="top" align="center">5</td>
<td valign="top" align="left">Left relative shift</td>
<td valign="top" align="left">Increase <italic>K</italic><sub>1</sub> <italic>k</italic><sub>&#x02212;1</sub></td>
</tr>
<tr>
<td valign="top" align="left">&#x00394;<italic>x</italic><sub>CaB</sub></td>
<td valign="top" align="center">6</td>
<td valign="top" align="left">Leftward shift</td>
<td valign="top" align="left">Increase <italic>K</italic><sub>1</sub> <italic>k</italic><sub>&#x02212;1</sub></td>
</tr>
</tbody>
</table>
</table-wrap>
<p>The dissociation of Ca<sup>2&#x0002B;</sup> from the Ca<sup>2&#x0002B;</sup> regulatory sites of Tn is not uniform over time. Owing to a faster off-rate, Ca<sup>2&#x0002B;</sup>-bound <italic>B</italic> states (<italic>B</italic><sub>2</sub> &#x0002B; <italic>B</italic><sub>3</sub>) release Ca<sup>2&#x0002B;</sup> faster than Ca<sup>2&#x0002B;</sup>-bound <italic>T</italic> states (<italic>T</italic><sub>2</sub> &#x0002B; <italic>T</italic><sub>3</sub>; Figure <xref ref-type="fig" rid="F3">3</xref>). Hence, a significant fraction of Tn has released Ca<sup>2&#x0002B;</sup> before tension reaches a peak. A protracted dissociation of residual Ca<sup>2&#x0002B;</sup> comes mainly from <italic>T</italic> states, which represent a pool of Tn molecules held away from interaction with actin in the <italic>B</italic> position owing to crossbridges (crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn).</p>
</sec>
<sec>
<title>Transient response with non-overlap</title>
<p>The relationship between calculated Ca<sup>2&#x0002B;</sup>-bound Tn and fluo-3 data differs dramatically in muscle fibers stretched beyond overlap. To simulate no overlap, we nullify <inline-formula><mml:math id="M14"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula><italic>k</italic><sub>&#x02212;0</sub> in Equation (1), but otherwise preserve the rates established for the overlap condition (Table <xref ref-type="table" rid="T1">1</xref>). Absent crossbridges, the decays of calculated Ca<sup>2&#x0002B;</sup>-bound troponin, whether expressed as a total or separated into components <italic>B</italic> and <italic>T</italic>, are much faster than the decay of fluo-3 fluorescence (Figure <xref ref-type="fig" rid="F4">4</xref>). No combinations of rate constants will allow the model to fit the tension data of the overlap preparation and the fluo-3 data of overlap and non-overlap preparations. By contrast, the decay of fluo-3 fluorescence is constant for overlap and non-overlap conditions (Figures <xref ref-type="fig" rid="F3">3</xref>, <xref ref-type="fig" rid="F5">5</xref>). Therefore, there is not a causal relationship between the calculated Ca<sup>2&#x0002B;</sup>-bound state of troponin and fluo-3 fluorescence.</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p><bold>Time courses of principle states of the thin filament with no overlap</bold>. Plotted as a function of a pulse of free calcium (green) are calculated transients of states <italic>B</italic> (dark blue), <italic>C</italic> (red), and <italic>M</italic> (black). Total Ca<sup>2&#x0002B;</sup>-bound Tn (<italic>B</italic><sub>2</sub> &#x0002B; <italic>B</italic><sub>3</sub> &#x0002B; <italic>T</italic><sub>2</sub> &#x0002B; <italic>T</italic><sub>3</sub>; gold) is broken down into fast (<italic>B</italic><sub>2</sub> &#x0002B; <italic>B</italic><sub>3</sub>; blue) and slow (<italic>T</italic><sub>2</sub> &#x0002B; <italic>T</italic><sub>3</sub>; gray) components. For comparison, the measured fluo-3 fluorescence transient (squares) is reproduced from Figure <xref ref-type="fig" rid="F3">3</xref>.</p></caption>
<graphic xlink:href="fphys-07-00406-g0004.tif"/>
</fig>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p><bold>Time courses of fluo-3 fluorescence and transient structural changes of troponin in nonoverlap sarcomeres</bold>. Changes in intensity of the meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection (triangles) and of fluo-3 fluorescence (squares) in response to a single calcium pulse are reproduced for muscle stretched beyond overlap (Matsuo et al., <xref ref-type="bibr" rid="B23">2010</xref>). Plotted on the same scale in response to a simulated calcium pulse (Figure <xref ref-type="fig" rid="F2">2</xref>) are the calculated temporal change of state <italic>C</italic> (red) and calcium bound to troponin (gold) under standard conditions (Table <xref ref-type="table" rid="T1">1</xref>) with <inline-formula><mml:math id="M15"><mml:msubsup><mml:mi>K</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> set to null. Other adjustments in standard conditions (Table <xref ref-type="table" rid="T2">2</xref>) alter the decay rate of Ca<sup>2&#x0002B;</sup>-bound Tn (&#x00394;<italic>x</italic><sub>CaB</sub>) and the relationship with the state <italic>C</italic> transient (&#x00394;<italic>dif</italic> <sub>C</sub>).</p></caption>
<graphic xlink:href="fphys-07-00406-g0005.tif"/>
</fig>
<p>Matsuo et al. (<xref ref-type="bibr" rid="B23">2010</xref>) show that in a non-overlap sarcomere preparation, the fluo-3 fluorescence decay is slower than the decay of meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection intensity, which corresponds to the troponin repeat in the thin filament (Figure <xref ref-type="fig" rid="F5">5</xref>). We find that the calculated time courses of Ca<sup>2&#x0002B;</sup>-bound Tn and the <italic>C</italic> position of Tm correlate with the transient of meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection intensity (Figure <xref ref-type="fig" rid="F5">5</xref>). A systematic sensitivity test of all rate constants shows that the decay of Ca<sup>2&#x0002B;</sup>-bound Tn is limited only by <italic>k</italic><sub>&#x02212;4</sub> of the model (Figure <xref ref-type="fig" rid="F5">5</xref>, Table <xref ref-type="table" rid="T2">2</xref>). This is the faster of two dissociation rates determined for Ca<sup>2&#x0002B;</sup> from regulated actin (Rosenfeld and Taylor, <xref ref-type="bibr" rid="B30">1987</xref>). Increasing <italic>k</italic><sub>&#x02212;4</sub> by a factor of 1.33, which is within the range of measured values (Rosenfeld and Taylor, <xref ref-type="bibr" rid="B30">1987</xref>), and maintaining the same steady-state conditions (inset, Figure <xref ref-type="fig" rid="F2">2</xref>) bring the decay rate of Ca<sup>2&#x0002B;</sup>-bound Tn closer in alignment with the decay of meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection intensity (see <xref ref-type="supplementary-material" rid="SM1">Supplementary Materials</xref>). Furthermore, the decays of Ca<sup>2&#x0002B;</sup>-bound Tn and state <italic>C</italic> of Tm align more closely by increasing <italic>K</italic><sub>1</sub><italic>k</italic><sub>&#x02212;1</sub> (Figure <xref ref-type="fig" rid="F5">5</xref>, Table <xref ref-type="table" rid="T2">2</xref>; see <xref ref-type="supplementary-material" rid="SM1">Supplementary Materials</xref>). Hence, the model predicts that the decay rate of meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection intensity in the non-overlap preparation gives an <italic>in vivo</italic> measure of the rate of Ca<sup>2&#x0002B;</sup> dissociation from Tn. A characteristic intensity increase in response to Ca<sup>2&#x0002B;</sup> represents Tn-dependent structural changes of the thin filament (Yagi, <xref ref-type="bibr" rid="B36">2003</xref>). Modeling suggests that Ca<sup>2&#x0002B;</sup>-bound Tn regulates completely the structural changes related to the movement of Tm to position C in the non-overlap preparation.</p>
</sec>
<sec>
<title>Transient structural changes with overlap</title>
<p>In the overlap preparation, the structural changes related to meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection intensity are more complex (Matsuo et al., <xref ref-type="bibr" rid="B23">2010</xref>), showing intensity changes with positive and negative slopes over the time course of a twitch (Figure <xref ref-type="fig" rid="F6">6</xref>). The early rise in reflection intensity correlates with a brief period at the beginning of the Ca<sup>2&#x0002B;</sup> pulse in which the model predicts a rise in Ca<sup>2&#x0002B;</sup>-bound Tn and state <italic>C</italic> of Tm before the transition to state <italic>M</italic> of Tm begins. The large negative change in reflection intensity has roughly the same time course as the calculated fraction of Tm in the <italic>M</italic> position (Figure <xref ref-type="fig" rid="F6">6</xref>). The minimum reflection intensity comes at a time after the Ca<sup>2&#x0002B;</sup> transient has decayed and the calculated <italic>M</italic> state has peaked.</p>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p><bold>Model compared with temporal responses measured in overlap sarcomeres</bold>. Intensities of the meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection (triangles), tension (circles), and fluo-3 fluorescence (squares) for average sarcomere length of 2.8 &#x003BC;m in response to a single calcium pulse are reproduced (Matsuo et al., <xref ref-type="bibr" rid="B23">2010</xref>). Plotted on the same scale in response to a simulated calcium pulse (Figure <xref ref-type="fig" rid="F2">2</xref>) are the calculated temporal changes of states <italic>C</italic> (red) and <italic>M</italic> (black) and Ca<sup>2&#x0002B;</sup>-bound Tn (gold) under standard conditions (Table <xref ref-type="table" rid="T1">1</xref>). Adjustments in standard conditions (Table <xref ref-type="table" rid="T2">2</xref>) alter the decay rate of Ca<sup>2&#x0002B;</sup>-bound Tn (&#x00394;<italic>x</italic><sub>CaB</sub>).</p></caption>
<graphic xlink:href="fphys-07-00406-g0006.tif"/>
</fig>
<p>The calculated decay rate of Ca<sup>2&#x0002B;</sup>-bound Tn can be made more rapid than the measured decay of fluo-3 fluorescence by increasing rate constants, <italic>K</italic><sub>1</sub> <italic>k</italic><sub>&#x02212;1</sub>, at fixed <italic>K</italic><sub>1</sub> (Figure <xref ref-type="fig" rid="F6">6</xref>, Table <xref ref-type="table" rid="T2">2</xref>). However, both absolute rates and the competition between states <italic>M</italic> and <italic>B</italic> for Tm in state <italic>C</italic> (Figure <xref ref-type="fig" rid="F1">1</xref>) must be made more extreme to hold constant the calculated tension transient (Figure <xref ref-type="fig" rid="F3">3</xref>). Thus, a balance of competing factors explains the correlation between the calculated Ca<sup>2&#x0002B;</sup>-bound state of Tn and the fluo-3 fluorescence transient in the overlap preparation (Figure <xref ref-type="fig" rid="F6">6</xref>).</p>
</sec>
<sec>
<title>Predicted time course of crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn</title>
<p>Crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn is the difference between Ca<sup>2&#x0002B;</sup>-bound Tn calculated for overlap and non-overlap conditions, holding the transient of free Ca<sup>2&#x0002B;</sup> constant (Figure <xref ref-type="fig" rid="F7">7</xref>). The residue is a pool of crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn, which represents about 30% of the total area under the curve. The rise in the pool of crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn begins near the end of the free Ca<sup>2&#x0002B;</sup> transient and continues during the decay of the tension transient. Peaking at &#x0007E;60 ms, the time course of rising crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn correlates most closely with the time course of the declining phase in meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection intensity, which reaches a minimum at &#x0007E;70 ms.</p>
<fig id="F7" position="float">
<label>Figure 7</label>
<caption><p><bold>Predicted time course of crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn</bold>. Crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn is the residual (dashed line) obtained by subtracting Ca<sup>2&#x0002B;</sup>-bound Tn calculated for the non-overlap preparation (Figure <xref ref-type="fig" rid="F4">4</xref>) from Ca<sup>2&#x0002B;</sup>-bound Tn calculated for the overlap preparation (solid gold line; Figure <xref ref-type="fig" rid="F3">3</xref>). The stimulus for both conditions (green) is taken from Figure <xref ref-type="fig" rid="F2">2</xref>.</p></caption>
<graphic xlink:href="fphys-07-00406-g0007.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>A comprehensive model of thin filament regulation presented here supports the hypothesis that Ca<sup>2&#x0002B;</sup>-bound Tn has a causal relationship with the structure of Tn in the thin filament and not with the pool of Ca<sup>2&#x0002B;</sup> represented by the intensity of fluo-3 fluorescence. Rather than recapitulating the decay of the fluo-3 fluorescence change in the non-overlap preparation of frog muscle, the model presented here generates transients for Ca<sup>2&#x0002B;</sup>-bound Tn and position <italic>C</italic> of Tm-Tn that match transient changes in intensity of the meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection in response to Ca<sup>2&#x0002B;</sup> stimulus. The model predicts similar rates of Ca<sup>2&#x0002B;</sup> dissociation from the regulatory sites of Tn in the first 50 ms following stimulation of both preparations, overlap and non-overlap. After this period, the model predicts that decays of Ca<sup>2&#x0002B;</sup>-bound Tn in the two preparations diverge, hence demonstrating a fraction of Ca<sup>2&#x0002B;</sup>-bound Tn that persists owing to crossbridge interaction. Given the same free Ca<sup>2&#x0002B;</sup> transient for both overlap and nonoverlap conditions, calculations of Ca<sup>2&#x0002B;</sup>-bound Tn, and crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn correlate with the time courses of positive and negative changes in intensity of the meridional 1/38.5 nm<sup>&#x02212;1</sup> reflection, respectively, suggestive of a causal relationship. By reproducing the twitch of a well-studied physiologic system given a highly reproducible experimental Ca<sup>2&#x0002B;</sup> transient, we achieve a proof of concept for the model presented here.</p>
<p>Fluo-3 may be responding to an exchangeable pool of Ca<sup>2&#x0002B;</sup> bound to Ca<sup>2&#x0002B;</sup> buffers in the sarcoplasm (Cannell and Allen, <xref ref-type="bibr" rid="B6">1984</xref>; Baylor and Hollingworth, <xref ref-type="bibr" rid="B1">1998</xref>). Small diffusible Ca<sup>2&#x0002B;</sup> binding molecules such as ATP and parvalbumin in the myofilaments can facilitate the diffusion of Ca<sup>2&#x0002B;</sup> (Feher, <xref ref-type="bibr" rid="B12">1984</xref>) and thereby possibly reduce random non-uniform reactivation events in relaxing myofibrils. However, a fixed Ca<sup>2&#x0002B;</sup> buffer also prolongs elevated Ca<sup>2&#x0002B;</sup> in the cytosol at all sarcomere lengths, regardless of the status of Ca<sup>2&#x0002B;</sup>-bound Tn. The decay of the fluo-3 fluorescence may represent a compromise based on the Ca<sup>2&#x0002B;</sup> requirements of the working and relaxed muscle.</p>
<p>We assume that the Ca<sup>2&#x0002B;</sup> sequestration apparatus has the capacity to prevent a significant rise in free Ca<sup>2&#x0002B;</sup> resulting from a pool of crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn during a twitch. Aside from equilibrium binding of Ca<sup>2&#x0002B;</sup> to buffering agents represented by the fluo-3 fluorescence intensity, Ca<sup>2&#x0002B;</sup> is actively transported from the sarcoplasm by the Ca<sup>2&#x0002B;</sup> pump of the sarcoplasmic reticulum (SR Ca<sup>2&#x0002B;</sup>-ATPase). Previous results from amphibian fast skeletal muscle using inhibitors of SR Ca<sup>2&#x0002B;</sup>-ATPase have shown that the decay and not the peak in free Ca<sup>2&#x0002B;</sup> depends on active Ca<sup>2&#x0002B;</sup> transport (Jiang et al., <xref ref-type="bibr" rid="B20">1996</xref>; Westerblad and Allen, <xref ref-type="bibr" rid="B34">1996</xref>; M&#x000EA;me et al., <xref ref-type="bibr" rid="B25">1998</xref>; Caputo et al., <xref ref-type="bibr" rid="B8">1999</xref>). The delay in onset argues against a significant contribution to the rise and decay process of free Ca<sup>2&#x0002B;</sup> sparks by Ca<sup>2&#x0002B;</sup> dissociating from the pool of crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn. We suggest the rate and load of Ca<sup>2&#x0002B;</sup> dissociating from crossbridge-dependent Ca<sup>2&#x0002B;</sup>-bound Tn is within the capacity of Ca<sup>2&#x0002B;</sup> buffers and SR Ca<sup>2&#x0002B;</sup>-ATPase to move into the SR without effecting a significant increase in sarcoplasmic free Ca<sup>2&#x0002B;</sup>.</p>
<p>One assumption of the model is that cooperative activation depends exclusively on cycling crossbridges. Although, Equation (1) has the distinction of being a more general form of the Hill equation (Zot et al., <xref ref-type="bibr" rid="B40">2012</xref>), the resulting system of ODE we derive here are mathematically compatible with any logistic function. Hence, the model presented here is limited to a mechanism of regulation in which a steady-state process fully accounts for cooperative transitions between <italic>C</italic> and <italic>M</italic> states.</p>
<p>A second assumption of the model is that activated state, <italic>M</italic>, is proportional to the fraction of maximum tension. This simplification is consistent with the proposal that tension bearing crossbridges are excluded from thin filament states <italic>C</italic> and <italic>B</italic> (Lehman et al., <xref ref-type="bibr" rid="B22">2000</xref>).</p>
<p>A third assumption of the model is that Ca<sup>2&#x0002B;</sup> binding to the regulatory sites of TnC is uncoupled from the process of activation when the complex of Tm-Tn is in positions <italic>C</italic> and <italic>M</italic>. Consequently, we model the <italic>C</italic> position as favored at equilibrium. Tm occupies either <italic>C</italic> or <italic>B</italic> positions in reconstructions of skeletal and cardiac filaments, respectively, but the complex of Tm-Tn is positioned exclusively in <italic>C</italic> with Ca<sup>2&#x0002B;</sup> present (Lehman et al., <xref ref-type="bibr" rid="B22">2000</xref>). There is general agreement that Ca<sup>2&#x0002B;</sup> is required to release Tm-Tn from the <italic>B</italic> position. A possible, albeit more complicated, mechanism is for Ca<sup>2&#x0002B;</sup> to have a second, independent action, namely, to perturb the equilibrium position of the Tm-Tn complex. This latter possibility is difficult to reconcile with an uncoupling mechanism.</p>
<p>Although, we do not address a specific myopathy, we suggest that results presented here can be extrapolated to mechanisms underlying disease. By employing a model that accounts for the Ca<sup>2&#x0002B;</sup> regulatory properties of Tn, we provide a satisfying explanation for the events of contraction arising from a transient of free Ca<sup>2&#x0002B;</sup>. The model presented here is consistent with previous experimental results showing non-cooperative Ca<sup>2&#x0002B;</sup> binding to regulated actin in the presence or absence of rigor crossbridges and recapitulates the complex cooperative relationship between Ca<sup>2&#x0002B;</sup>-binding and force in the steady-state (Figure <xref ref-type="fig" rid="F2">2</xref>). Of the eight adjustable parameters (Table <xref ref-type="table" rid="T2">2</xref>), we have consistently published results in which <italic>K</italic><sub>1</sub> alone is freely adjusted and <italic>K</italic><sub>3</sub> and <italic>K</italic><sub>5</sub> vary in a prescribed manner. A recent study shows that the model presented here can inform experiments that explain how a mutation in TnC alters the Ca<sup>2&#x0002B;</sup> sensitivity of cardiac myofilaments associated with the hypertrophic state of the heart (Zot et al., <xref ref-type="bibr" rid="B39">2016b</xref>). A previous study shows that the model presented here can fully explain the depressing effect of Ca<sup>2&#x0002B;</sup>-insensitive mutant TnC on cooperative activation of skeletal muscle fibers (Zot et al., <xref ref-type="bibr" rid="B42">2009</xref>). Hence, a growing body of experimental results in cardiac and skeletal muscle, mutant and wild type preparations, reconstituted and intact systems, and steady-state and transient conditions are explained by the same model and highly constrained parameters of this model. As a robust and reliable predictor of transient and steady-state changes in thin filament structure related to Ca<sup>2&#x0002B;</sup>-bound Tn, the model presented here is capable of guiding future experiments to uncover mechanisms by which mutations in excitation-contraction coupling lead to pathological conditions.</p>
</sec>
<sec id="s5">
<title>Author contributions</title>
<p>Each of the authors contributed significantly to the conception and design of the work, drafting and revision of the manuscript, and final approval of the version to be published. Both authors agree to be accountable for all aspects of the work.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<sec sec-type="supplementary-material" id="s6">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="http://journal.frontiersin.org/article/10.3389/fphys.2016.00406">http://journal.frontiersin.org/article/10.3389/fphys.2016.00406</ext-link></p>
<supplementary-material xlink:href="DataSheet1.PDF" id="SM1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Baylor</surname> <given-names>S. M.</given-names></name> <name><surname>Hollingworth</surname> <given-names>S.</given-names></name></person-group> (<year>1998</year>). <article-title>Model of sarcomeric Ca<sup>2&#x0002B;</sup> movements, including ATP Ca<sup>2&#x0002B;</sup> binding and diffusion, during activation of frog skeletal muscle</article-title>. <source>J. Gen. Physiol.</source> <volume>112</volume>, <fpage>297</fpage>&#x02013;<lpage>316</lpage>. <pub-id pub-id-type="doi">10.1085/jgp.112.3.297</pub-id><pub-id pub-id-type="pmid">9725890</pub-id></citation>
</ref>
<ref id="B2">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Baylor</surname> <given-names>S. M.</given-names></name> <name><surname>Hollingworth</surname> <given-names>S.</given-names></name></person-group> (<year>2007</year>). <article-title>Simulation of Ca<sup>2&#x0002B;</sup> movements within the sarcomere of fast-twitch mouse fibers stimulated by action potentials</article-title>. <source>J. Gen. Physiol.</source> <volume>130</volume>, <fpage>283</fpage>&#x02013;<lpage>302</lpage>. <pub-id pub-id-type="doi">10.1085/jgp.200709827</pub-id><pub-id pub-id-type="pmid">17724162</pub-id></citation>
</ref>
<ref id="B3">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Baylor</surname> <given-names>S. M.</given-names></name> <name><surname>Hollingworth</surname> <given-names>S.</given-names></name></person-group> (<year>2011</year>). <article-title>Calcium indicators and calcium signalling in skeletal muscle fibres during excitation-contraction coupling</article-title>. <source>Prog. Biophys. Mol. Biol.</source> <volume>105</volume>, <fpage>162</fpage>&#x02013;<lpage>179</lpage>. <pub-id pub-id-type="doi">10.1016/j.pbiomolbio.2010.06.001</pub-id><pub-id pub-id-type="pmid">20599552</pub-id></citation>
</ref>
<ref id="B4">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Baylor</surname> <given-names>S. M.</given-names></name> <name><surname>Hollingworth</surname> <given-names>S.</given-names></name> <name><surname>Chandler</surname> <given-names>W. K.</given-names></name></person-group> (<year>2002</year>). <article-title>Comparison of simulated and measured calcium sparks in intact skeletal muscle fibers of the frog</article-title>. <source>J. Gen. Physiol.</source> <volume>20</volume>, <fpage>349</fpage>&#x02013;<lpage>368</lpage>. <pub-id pub-id-type="doi">10.1085/jgp.20028620</pub-id></citation>
</ref>
<ref id="B5">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brandt</surname> <given-names>P. W.</given-names></name> <name><surname>Poggesi</surname> <given-names>C.</given-names></name></person-group> (<year>2014</year>). <article-title>Clusters of bound Ca<sup>2&#x0002B;</sup> initiate contraction in fast skeletal muscle</article-title>. <source>Arch. Biochem. Biophys.</source> <fpage>552</fpage>&#x02013;<lpage>553</lpage>, 60&#x02013;67. <pub-id pub-id-type="doi">10.1016/j.abb.2013.12.013</pub-id></citation>
</ref>
<ref id="B6">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cannell</surname> <given-names>M. B.</given-names></name> <name><surname>Allen</surname> <given-names>D. G.</given-names></name></person-group> (<year>1984</year>). <article-title>Model of calcium movements during activation in the sarcomere of frog skeletal muscle</article-title>. <source>Biophys. J.</source> <volume>45</volume>, <fpage>913</fpage>&#x02013;<lpage>925</lpage>. <pub-id pub-id-type="doi">10.1016/S0006-3495(84)84238-1</pub-id><pub-id pub-id-type="pmid">6733242</pub-id></citation>
</ref>
<ref id="B7">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cannell</surname> <given-names>M. B.</given-names></name> <name><surname>Cheng</surname> <given-names>H.</given-names></name> <name><surname>Lederer</surname> <given-names>W. J.</given-names></name></person-group> (<year>1995</year>). <article-title>The control of calcium release in heart muscle</article-title>. <source>Science</source> <volume>268</volume>, <fpage>1045</fpage>&#x02013;<lpage>1049</lpage>. <pub-id pub-id-type="doi">10.1126/science.7754384</pub-id><pub-id pub-id-type="pmid">7754384</pub-id></citation>
</ref>
<ref id="B8">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Caputo</surname> <given-names>C.</given-names></name> <name><surname>Bola&#x000F1;os</surname> <given-names>P.</given-names></name> <name><surname>Escobar</surname> <given-names>A. L.</given-names></name></person-group> (<year>1999</year>). <article-title>Fast calcium removal during single twitches in amphibian skeletal muscle fibres</article-title>. <source>J. Mus. Res. Cell Motil.</source> <volume>20</volume>, <fpage>555</fpage>&#x02013;<lpage>567</lpage>. <pub-id pub-id-type="doi">10.1023/A:1005526202747</pub-id><pub-id pub-id-type="pmid">10555074</pub-id></citation>
</ref>
<ref id="B9">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Caputo</surname> <given-names>C.</given-names></name> <name><surname>Edman</surname> <given-names>K. A.</given-names></name> <name><surname>Lou</surname> <given-names>F.</given-names></name> <name><surname>Sun</surname> <given-names>Y. B.</given-names></name></person-group> (<year>1994</year>). <article-title>Variation in myoplasmic Ca<sup>2&#x0002B;</sup> concentration during contraction and relaxation studied by the indicator fluo-3 in frog muscle fibres</article-title>. <source>J. Physiol.</source> <volume>478</volume>(<issue>Pt 1</issue>), <fpage>137</fpage>&#x02013;<lpage>148</lpage>. <pub-id pub-id-type="doi">10.1113/jphysiol.1994.sp020237</pub-id><pub-id pub-id-type="pmid">7965829</pub-id></citation>
</ref>
<ref id="B10">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Davis</surname> <given-names>J. P.</given-names></name> <name><surname>Rall</surname> <given-names>J. A.</given-names></name> <name><surname>Reiser</surname> <given-names>P. J.</given-names></name> <name><surname>Smillie</surname> <given-names>L. B.</given-names></name> <name><surname>Tikunova</surname> <given-names>S. B.</given-names></name></person-group> (<year>2002</year>). <article-title>Engineering competitive magnesium binding into the first EF-hand of skeletal troponin C</article-title>. <source>J. Biol. Chem.</source> <volume>277</volume>, <fpage>49716</fpage>&#x02013;<lpage>49726</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M208488200</pub-id><pub-id pub-id-type="pmid">12397067</pub-id></citation>
</ref>
<ref id="B11">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Eaton</surname> <given-names>B. L.</given-names></name></person-group> (<year>1976</year>). <article-title>Tropomyosin binding to F-actin induced by myosin heads</article-title>. <source>Science</source> <volume>192</volume>, <fpage>1337</fpage>&#x02013;<lpage>1339</lpage>. <pub-id pub-id-type="doi">10.1126/science.131972</pub-id><pub-id pub-id-type="pmid">131972</pub-id></citation>
</ref>
<ref id="B12">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Feher</surname> <given-names>J. J.</given-names></name></person-group> (<year>1984</year>). <article-title>Measurement of facilitated calcium diffusion by a soluble calcium-binding protein</article-title>. <source>Biochim. Biophys. Acta</source> <volume>773</volume>, <fpage>91</fpage>&#x02013;<lpage>98</lpage>. <pub-id pub-id-type="doi">10.1016/0005-2736(84)90553-4</pub-id><pub-id pub-id-type="pmid">6733098</pub-id></citation>
</ref>
<ref id="B13">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gagn&#x000E9;</surname> <given-names>S. M.</given-names></name> <name><surname>Tsuda</surname> <given-names>S.</given-names></name> <name><surname>Li</surname> <given-names>M. X.</given-names></name> <name><surname>Smillie</surname> <given-names>L. B.</given-names></name> <name><surname>Sykes</surname> <given-names>B. D.</given-names></name></person-group> (<year>1995</year>). <article-title>Structures of the troponin C regulatory domains in the apo and calcium-saturated states</article-title>. <source>Nat. Struct. Biol.</source> <volume>2</volume>:<fpage>784</fpage>&#x02013;<lpage>789</lpage>. <pub-id pub-id-type="doi">10.1038/nsb0995-784</pub-id><pub-id pub-id-type="pmid">7552750</pub-id></citation>
</ref>
<ref id="B14">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Grabarek</surname> <given-names>Z.</given-names></name> <name><surname>Grabarek</surname> <given-names>J.</given-names></name> <name><surname>Leavis</surname> <given-names>P. C.</given-names></name> <name><surname>Gergely</surname> <given-names>J.</given-names></name></person-group> (<year>1983</year>). <article-title>Cooperative binding to the Ca<sup>2&#x0002B;</sup>-specific sites of troponin C in regulated actin and actomyosin</article-title>. <source>J. Biol. Chem.</source> <volume>258</volume>, <fpage>14098</fpage>&#x02013;<lpage>14102</lpage>. <pub-id pub-id-type="pmid">6643469</pub-id></citation>
</ref>
<ref id="B15">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Greaser</surname> <given-names>M. L.</given-names></name> <name><surname>Gergely</surname> <given-names>J.</given-names></name></person-group> (<year>1973</year>). <article-title>Purification and properties of the components from troponin</article-title>. <source>J. Biol. Chem.</source> <volume>248</volume>, <fpage>2125</fpage>&#x02013;<lpage>2133</lpage>. <pub-id pub-id-type="pmid">4266138</pub-id></citation>
</ref>
<ref id="B16">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Harkins</surname> <given-names>A. B.</given-names></name> <name><surname>Kurebayashi</surname> <given-names>N.</given-names></name> <name><surname>Baylor</surname> <given-names>S. M.</given-names></name></person-group> (<year>1993</year>). <article-title>Resting myoplasmic free calcium in frog skeletal muscle fibers estimated with fluo-3</article-title>. <source>Biophys. J.</source> <volume>65</volume>, <fpage>865</fpage>&#x02013;<lpage>881</lpage>. <pub-id pub-id-type="doi">10.1016/S0006-3495(93)81112-3</pub-id><pub-id pub-id-type="pmid">8218910</pub-id></citation>
</ref>
<ref id="B17">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hill</surname> <given-names>A. V.</given-names></name></person-group> (<year>1910</year>). <article-title>The possible effects of the aggregation of the molecules of haemoglobin on its dissociation curves</article-title>. <source>J. Physiol.</source> <volume>40</volume>, <fpage>iv</fpage>&#x02013;<lpage>vii</lpage>.</citation>
</ref>
<ref id="B18">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hollingworth</surname> <given-names>S.</given-names></name> <name><surname>Baylor</surname> <given-names>S. M.</given-names></name></person-group> (<year>2013</year>). <article-title>Comparison of myoplasmic calcium movements during excitation-contraction coupling in frog twitch and mouse fast-twitch muscle fibers</article-title>. <source>J. Gen. Physiol.</source> <volume>141</volume>, <fpage>567</fpage>&#x02013;<lpage>583</lpage>. <pub-id pub-id-type="doi">10.1085/jgp.201310961</pub-id><pub-id pub-id-type="pmid">23630340</pub-id></citation>
</ref>
<ref id="B19">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hollingworth</surname> <given-names>S.</given-names></name> <name><surname>Gee</surname> <given-names>K. R.</given-names></name> <name><surname>Baylor</surname> <given-names>S. M.</given-names></name></person-group> (<year>2009</year>). <article-title>Low-affinity Ca<sup>2&#x0002B;</sup>, indicators compared in measurements of skeletal muscle Ca<sup>2&#x0002B;</sup>, transients</article-title>. <source>Biophys. J.</source> <volume>97</volume>, <fpage>1864</fpage>&#x02013;<lpage>1872</lpage>. <pub-id pub-id-type="doi">10.1016/j.bpj.2009.07.021</pub-id><pub-id pub-id-type="pmid">19804716</pub-id></citation>
</ref>
<ref id="B20">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jiang</surname> <given-names>Y.</given-names></name> <name><surname>Johnson</surname> <given-names>J. D.</given-names></name> <name><surname>Rall</surname> <given-names>J. A.</given-names></name></person-group> (<year>1996</year>). <article-title>Parvalbumin relaxes frog skeletal muscle when sarcoplasmic Ca<sup>2&#x0002B;</sup>-ATPase inhibited</article-title>. <source>Am. J. Physiol.</source> <volume>270</volume>, <fpage>C411</fpage>&#x02013;<lpage>C417</lpage>.</citation>
</ref>
<ref id="B21">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Konishi</surname> <given-names>M.</given-names></name> <name><surname>Hollingworth</surname> <given-names>S.</given-names></name> <name><surname>Harkins</surname> <given-names>A. B.</given-names></name> <name><surname>Baylor</surname> <given-names>S. M.</given-names></name></person-group> (<year>1991</year>). <article-title>Myoplasmic calcium transients in intact frog skeletal muscle fibers monitored with the fluorescent indicator furaptra</article-title>. <source>J. Gen. Physiol.</source> <volume>97</volume>, <fpage>271</fpage>&#x02013;<lpage>301</lpage>. <pub-id pub-id-type="doi">10.1085/jgp.97.2.271</pub-id><pub-id pub-id-type="pmid">2016581</pub-id></citation>
</ref>
<ref id="B22">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lehman</surname> <given-names>W.</given-names></name> <name><surname>Hatch</surname> <given-names>V.</given-names></name> <name><surname>Korman</surname> <given-names>V.</given-names></name> <name><surname>Rosol</surname> <given-names>M.</given-names></name> <name><surname>Thomas</surname> <given-names>L.</given-names></name> <name><surname>Maytum</surname> <given-names>R.</given-names></name> <etal/></person-group>. (<year>2000</year>). <article-title>Tropomyosin and actin isoforms modulate the localization of tropomyosin strands on actin filaments</article-title>. <source>J. Mol. Biol.</source> <volume>302</volume>, <fpage>593</fpage>&#x02013;<lpage>606</lpage>. <pub-id pub-id-type="doi">10.1006/jmbi.2000.4080</pub-id><pub-id pub-id-type="pmid">10986121</pub-id></citation>
</ref>
<ref id="B23">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Matsuo</surname> <given-names>T.</given-names></name> <name><surname>Iwamoto</surname> <given-names>H.</given-names></name> <name><surname>Yagi</surname> <given-names>N.</given-names></name></person-group> (<year>2010</year>). <article-title>Monitoring the structural behavior of troponin and myoplasmic free Ca<sup>2&#x0002B;</sup> concentration during twitch of frog skeletal muscle</article-title>. <source>Biophys. J.</source> <volume>99</volume>, <fpage>193</fpage>&#x02013;<lpage>200</lpage>. <pub-id pub-id-type="doi">10.1016/j.bpj.2010.04.021</pub-id><pub-id pub-id-type="pmid">20655847</pub-id></citation>
</ref>
<ref id="B24">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Matsuo</surname> <given-names>T.</given-names></name> <name><surname>Yagi</surname> <given-names>N.</given-names></name></person-group> (<year>2008</year>). <article-title>Structural changes in the muscle thin filament during contractions caused by single and double electrical pulses</article-title>. <source>J. Mol. Biol.</source> <volume>383</volume>, <fpage>1019</fpage>&#x02013;<lpage>1036</lpage>. <pub-id pub-id-type="doi">10.1016/j.jmb.2008.09.007</pub-id><pub-id pub-id-type="pmid">18817786</pub-id></citation>
</ref>
<ref id="B25">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>M&#x000EA;me</surname> <given-names>W.</given-names></name> <name><surname>Huchet-Cadiou</surname> <given-names>C.</given-names></name> <name><surname>L&#x000E9;oty</surname> <given-names>C.</given-names></name></person-group> (<year>1998</year>). <article-title>Cyclopiazonic acid-induced changes in the contraction and Ca<sup>2&#x0002B;</sup> transient of frog fast-twitch skeletal muscle</article-title>. <source>Am. J. Physiol.</source> <volume>274</volume>, <fpage>C253</fpage>&#x02013;<lpage>C261</lpage>. <pub-id pub-id-type="pmid">9458735</pub-id></citation>
</ref>
<ref id="B26">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Minta</surname> <given-names>A.</given-names></name> <name><surname>Kao</surname> <given-names>J. P.</given-names></name> <name><surname>Tsien</surname> <given-names>R. Y.</given-names></name></person-group> (<year>1989</year>). <article-title>Fluorescent indicators for cytosolic calcium based on rhodamine and fluorescein chromophores</article-title>. <source>J. Biol. Chem.</source> <volume>264</volume>, <fpage>8171</fpage>&#x02013;<lpage>8178</lpage>. <pub-id pub-id-type="pmid">2498308</pub-id></citation>
</ref>
<ref id="B27">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Phillips</surname> <given-names>G. N.</given-names> <suffix>Jr.</suffix></name> <name><surname>Fillers</surname> <given-names>J. P.</given-names></name> <name><surname>Cohen</surname> <given-names>C.</given-names></name></person-group> (<year>1986</year>). <article-title>Tropomyosin crystal structure and muscle regulation</article-title>. <source>J. Mol. Biol.</source> <volume>192</volume>, <fpage>111</fpage>&#x02013;<lpage>131</lpage>. <pub-id pub-id-type="doi">10.1016/0022-2836(86)90468-7</pub-id><pub-id pub-id-type="pmid">3820299</pub-id></citation>
</ref>
<ref id="B28">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Potter</surname> <given-names>J. D.</given-names></name> <name><surname>Gergely</surname> <given-names>J.</given-names></name></person-group> (<year>1975</year>). <article-title>The calcium and magnesium binding sites on troponin and their role in the regulation of myofibrillar adenosine triphosphatase</article-title>. <source>J. Biol. Chem.</source> <volume>250</volume>, <fpage>4628</fpage>&#x02013;<lpage>4633</lpage>. <pub-id pub-id-type="pmid">124731</pub-id></citation>
</ref>
<ref id="B29">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Robertson</surname> <given-names>S. P.</given-names></name> <name><surname>Johnson</surname> <given-names>J. D.</given-names></name> <name><surname>Potter</surname> <given-names>J. D.</given-names></name></person-group> (<year>1981</year>). <article-title>The time-course of Ca<sup>2&#x0002B;</sup> exchange with calmodulin, troponin, parvalbumin, and myosin in response to transient increases in Ca<sup>2&#x0002B;</sup></article-title>. <source>Biophys. J.</source> <volume>34</volume>, <fpage>559</fpage>&#x02013;<lpage>569</lpage>. <pub-id pub-id-type="doi">10.1016/S0006-3495(81)84868-0</pub-id><pub-id pub-id-type="pmid">7195747</pub-id></citation>
</ref>
<ref id="B30">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rosenfeld</surname> <given-names>S. S.</given-names></name> <name><surname>Taylor</surname> <given-names>E. W.</given-names></name></person-group> (<year>1987</year>). <article-title>The mechanism of regulation of actomyosin subfragment 1 ATPase</article-title>. <source>J. Biol. Chem.</source> <volume>262</volume>, <fpage>9984</fpage>&#x02013;<lpage>9993</lpage>. <pub-id pub-id-type="pmid">2956257</pub-id></citation>
</ref>
<ref id="B31">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Takeda</surname> <given-names>S.</given-names></name> <name><surname>Yamashita</surname> <given-names>A.</given-names></name> <name><surname>Maeda</surname> <given-names>K.</given-names></name> <name><surname>Maeda</surname> <given-names>Y.</given-names></name></person-group> (<year>2003</year>). <article-title>Structure of the core domain of human cardiac troponin in the Ca<sup>2&#x0002B;</sup>-saturated form</article-title>. <source>Nature</source> <volume>424</volume>:<fpage>35</fpage>&#x02013;<lpage>41</lpage>. <pub-id pub-id-type="doi">10.1038/nature01780</pub-id></citation>
</ref>
<ref id="B32">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tobacman</surname> <given-names>L. S.</given-names></name> <name><surname>Butters</surname> <given-names>C. A.</given-names></name></person-group> (<year>2000</year>). <article-title>A new model of cooperative myosin-thin filament binding</article-title>. <source>J. Biol. Chem.</source> <volume>275</volume>, <fpage>27587</fpage>&#x02013;<lpage>27593</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.m003648200</pub-id><pub-id pub-id-type="pmid">10864931</pub-id></citation>
</ref>
<ref id="B33">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tregear</surname> <given-names>R. T.</given-names></name> <name><surname>Reedy</surname> <given-names>M. C.</given-names></name> <name><surname>Goldman</surname> <given-names>Y. E.</given-names></name> <name><surname>Taylor</surname> <given-names>K. A.</given-names></name> <name><surname>Winkler</surname> <given-names>H.</given-names></name> <name><surname>Franzini-Armstrong</surname> <given-names>C.</given-names></name> <etal/></person-group>. (<year>2004</year>). <article-title>Cross-bridge number, position, and angle in target zones of cryofixed isometrically active insect flight muscle</article-title>. <source>Biophys. J.</source> <volume>86</volume>, <fpage>3009</fpage>&#x02013;<lpage>3019</lpage>. <pub-id pub-id-type="doi">10.1016/S0006-3495(04)74350-7</pub-id><pub-id pub-id-type="pmid">15111415</pub-id></citation>
</ref>
<ref id="B34">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Westerblad</surname> <given-names>H.</given-names></name> <name><surname>Allen</surname> <given-names>D. G.</given-names></name></person-group> (<year>1996</year>). <article-title>Slowing of relaxation and [Ca<sup>2&#x0002B;</sup>]i during prolonged tetanic stimulation of single fibres from Xenopus skeletal muscle</article-title>. <source>J. Physiol. Lond.</source> <volume>492</volume>, <fpage>723</fpage>&#x02013;<lpage>736</lpage>. <pub-id pub-id-type="doi">10.1113/jphysiol.1996.sp021341</pub-id><pub-id pub-id-type="pmid">8734985</pub-id></citation>
</ref>
<ref id="B35">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wnuk</surname> <given-names>W.</given-names></name> <name><surname>Schoechlin</surname> <given-names>M.</given-names></name> <name><surname>Stein</surname> <given-names>E. A.</given-names></name></person-group> (<year>1984</year>). <article-title>Regulation of actomyosin ATPase by a single calcium-binding site on troponin C from crayfish</article-title>. <source>J. Biol. Chem.</source> <volume>259</volume>, <fpage>9017</fpage>&#x02013;<lpage>9023</lpage>. <pub-id pub-id-type="pmid">6235221</pub-id></citation>
</ref>
<ref id="B36">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yagi</surname> <given-names>N.</given-names></name></person-group> (<year>2003</year>). <article-title>An x-ray diffraction study on early structural changes in skeletal muscle contraction</article-title>. <source>Biophys. J.</source> <volume>84</volume>, <fpage>1093</fpage>&#x02013;<lpage>1102</lpage>. <pub-id pub-id-type="doi">10.1016/S0006-3495(03)74925-X</pub-id><pub-id pub-id-type="pmid">12547790</pub-id></citation>
</ref>
<ref id="B37">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zot</surname> <given-names>A. S.</given-names></name> <name><surname>Potter</surname> <given-names>J. D.</given-names></name></person-group> (<year>1987</year>). <article-title>The effect of [Mg<sup>2&#x0002B;</sup>] on the Ca<sup>2&#x0002B;</sup> dependence of ATPase and tension development of fast skeletal muscle. The role of the Ca<sup>2&#x0002B;</sup>-specific sites of troponin C</article-title>. <source>J. Biol. Chem.</source> <volume>262</volume>, <fpage>1966</fpage>&#x02013;<lpage>1969</lpage>. <pub-id pub-id-type="pmid">2950083</pub-id></citation>
</ref>
<ref id="B38">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zot</surname> <given-names>H. G.</given-names></name> <name><surname>G&#x000FC;th</surname> <given-names>K.</given-names></name> <name><surname>Potter</surname> <given-names>J. D.</given-names></name></person-group> (<year>1986</year>). <article-title>Fast skeletal muscle skinned fibers and myofibrils reconstituted with N-terminal fluorescent analogues of troponin C</article-title>. <source>J. Biol. Chem.</source> <volume>261</volume>, <fpage>15883</fpage>&#x02013;<lpage>15890</lpage>. <pub-id pub-id-type="pmid">2946678</pub-id></citation>
</ref>
<ref id="B39">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zot</surname> <given-names>H. G.</given-names></name> <name><surname>Hasbun</surname> <given-names>J. E.</given-names></name> <name><surname>Michell</surname> <given-names>C. A.</given-names></name> <name><surname>Landim-Vieira</surname> <given-names>M.</given-names></name> <name><surname>Pinto</surname> <given-names>J. R.</given-names></name></person-group> (<year>2016b</year>). <article-title>Enhanced troponin I binding explains the functional changes produced by the hypertrophic cardiomyopathy mutation A8V of cardiac troponin C</article-title>. <source>Arch. Biochem. Biophys.</source> <volume>601</volume>, <fpage>97</fpage>&#x02013;<lpage>104</lpage>. <pub-id pub-id-type="doi">10.1016/j.abb.2016.03.011</pub-id><pub-id pub-id-type="pmid">26976709</pub-id></citation>
</ref>
<ref id="B40">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zot</surname> <given-names>H. G.</given-names></name> <name><surname>Hasbun</surname> <given-names>J. E.</given-names></name> <name><surname>Minh</surname> <given-names>N. V.</given-names></name></person-group> (<year>2012</year>). <article-title>Second-chance signal transduction explains cooperative flagellar switching</article-title>. <source>PLoS ONE</source> <volume>7</volume>:<fpage>e41098</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0041098</pub-id><pub-id pub-id-type="pmid">22844429</pub-id></citation>
</ref>
<ref id="B41">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zot</surname> <given-names>H. G.</given-names></name> <name><surname>Hasbun</surname> <given-names>J. E.</given-names></name> <name><surname>Van Minh</surname> <given-names>N.</given-names></name></person-group> (<year>2016a</year>). <article-title>Common basis for cellular motility</article-title>. arXiv:1511.00123. <pub-id pub-id-type="pmid">27481945</pub-id></citation>
</ref>
<ref id="B42">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zot</surname> <given-names>H. G.</given-names></name> <name><surname>Hasbun</surname> <given-names>J. E.</given-names></name> <name><surname>Van Minh</surname> <given-names>N.</given-names></name></person-group> (<year>2009</year>). <article-title>Striated muscle regulation of isometric tension by multiple equilibria</article-title>. <source>PLoS ONE</source> <volume>4</volume>:<fpage>e8052</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0008052</pub-id><pub-id pub-id-type="pmid">19997610</pub-id></citation>
</ref>
<ref id="B43">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zot</surname> <given-names>H. G.</given-names></name> <name><surname>Potter</surname> <given-names>J. D.</given-names></name></person-group> (<year>1987</year>). <article-title>Calcium binding and fluorescence measurements of dansylaziridine-labelled troponin C in reconstituted thin filaments</article-title>. <source>J. Muscle Res. Cell. Motil.</source> <volume>8</volume>, <fpage>428</fpage>&#x02013;<lpage>436</lpage>. <pub-id pub-id-type="doi">10.1007/BF01578432</pub-id><pub-id pub-id-type="pmid">3429643</pub-id></citation>
</ref>
</ref-list>
<glossary>
<def-list>
<title>Abbreviations</title>
<def-item><term>Troponin</term>
<def><p>Tn</p></def></def-item>
<def-item><term>tropomyosin</term>
<def><p>Tm</p></def></def-item>
<def-item><term><italic>B</italic></term>
<def><p>state of Tm in the blocking position</p></def></def-item>
<def-item><term><italic>C</italic></term>
<def><p>state of Tm in the central position</p></def></def-item>
<def-item><term><italic>M</italic></term>
<def><p>state of Tm in the myosin-dependent position.</p></def></def-item>
</def-list>
</glossary>
</back>
</article>