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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Phys.</journal-id>
<journal-title>Frontiers in Physics</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Phys.</abbrev-journal-title>
<issn pub-type="epub">2296-424X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fphy.2017.00013</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Physics</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Edge-Corrected Mean-Field Hubbard Model: Principle and Applications in 2D Materials</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Zhang</surname> <given-names>Xi</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/111833/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Wang</surname> <given-names>Tianlei</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/436712/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Chen</surname> <given-names>Wencong</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Wang</surname> <given-names>Sanmei</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Peng</surname> <given-names>Da</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/436727/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Guangdong Provincial Key Laboratory of Micro/Nano Optomechatronics Engineering, Institute of Nanosurface Science and Engineering, Shenzhen University</institution> <country>Shenzhen, China</country></aff>
<aff id="aff2"><sup>2</sup><institution>Key Laboratory of Low-Dimensional Materials and Application Technologies (Ministry of Education) and School of Materials, Science and Engineering, Xiangtan University</institution> <country>Hunan, China</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Jiabao Yi, University of New South Wales, Australia</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Zhimin Ao, Guangdong University of Technology, China; Zhaoqiang Bai, Western Digital Technologies, United States</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Xi Zhang <email>zh0005xi&#x00040;szu.edu.cn</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Physical Chemistry and Chemical Physics, a section of the journal Frontiers in Physics</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>16</day>
<month>05</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>5</volume>
<elocation-id>13</elocation-id>
<history>
<date date-type="received">
<day>05</day>
<month>03</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>25</day>
<month>04</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2017 Zhang, Wang, Chen, Wang and Peng.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Zhang, Wang, Chen, Wang and Peng</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>This work reviews the current progress of tight-binding methods and the recent edge-modified mean-field Hubbard model. Undercoordinated atoms (atoms not fully coordinated) exist at a high rate in nanomaterials with their impact overlooked. A quantum theory was proposed to calculate electronic structure of nanomaterials by incorporating bond order-length-strength (BOLS) correlation to mean-field Hubbard model, i.e., BOLS-HM. Consistency between the BOLS-HM calculation and density functional theory (DFT) calculation on 2D materials verified that (i) bond contractions and potential well depression occur at the edge of graphene, phosphorene, and antimonene nanoribbons; (ii) the physical origin of the band gap opening of graphene, phosphorene, and antimonene nanoribbons lays in the enhancement of edge potentials and hopping integrals due to the shorter and stronger bonds between undercoordinated atoms; (iii) the band gap of 2D material nanoribbons expand as the width decreases due to the increasing under-coordination effects of edges which modulates the conductive behaviors; and (iv) non-bond electrons at the edges and atomic vacancies of 2D material accompanied with the broken bond contribute to the Dirac-Fermi polaron (DFP) with a local magnetic moment.</p>
</abstract>
<kwd-group>
<kwd>Hubbard model</kwd>
<kwd>tight-binding</kwd>
<kwd>2D material</kwd>
<kwd>nanoribbon</kwd>
<kwd>BOLS</kwd>
<kwd>edge effect</kwd>
<kwd>electronic structure</kwd>
</kwd-group>
<contract-sponsor id="cn001">National Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content></contract-sponsor>
<contract-sponsor id="cn002">Natural Science Foundation of Guangdong Province<named-content content-type="fundref-id">10.13039/501100003453</named-content></contract-sponsor>
<counts>
<fig-count count="12"/>
<table-count count="2"/>
<equation-count count="23"/>
<ref-count count="100"/>
<page-count count="14"/>
<word-count count="8626"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>2D Materials demonstrate extraordinary properties compared with bulk material and attract overwhelming attentions. For example, band gap (E<sub>G</sub>) occurs of graphene nanoribbons(GNRs) while bulk graphite is a good conductor; E<sub>G</sub> expands monotonically with the inverse of ribbon width of GNR [<xref ref-type="bibr" rid="B1">1</xref>] and, bare or Hydrogen ended [<xref ref-type="bibr" rid="B2">2</xref>]; unexpected magnetism [<xref ref-type="bibr" rid="B3">3</xref>&#x02013;<xref ref-type="bibr" rid="B6">6</xref>] and quantum hall effect [<xref ref-type="bibr" rid="B7">7</xref>, <xref ref-type="bibr" rid="B8">8</xref>] were detected at the edge and defect sites of GNRs while bulk graphite is diamagnetism; few-layered phosphorene [<xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B10">10</xref>] shows high carrier motilities of 1,000 cm<sup>2</sup>V<sup>&#x02212;1</sup>s<sup>&#x02212;1</sup>, and a high current on/off ratio of up to 10<sup>5</sup> at room temperature; Antimony(Sb), non-hygroscopic, gray metal with a layered structure similar to that of BP [<xref ref-type="bibr" rid="B11">11</xref>]. Antimonene is stable at high temperature as high as 1,000 K [<xref ref-type="bibr" rid="B12">12</xref>] and becomes semiconducting when it is a one atomic layer [<xref ref-type="bibr" rid="B13">13</xref>].</p>
<p>Once the size of nanomaterials decreases, the ratio of under-coordinated atoms located at surface, edges, and defects increase compared to the total atomic number. Under-coordination effects induce tunability to the properties of nanomaterials, in contrast with the constant properties in bulky species. For example, the quantities such as the Young&#x00027;s modulus, melting point, dielectric constant, and the extensibility of a solid can change with the solid size [<xref ref-type="bibr" rid="B14">14</xref>&#x02013;<xref ref-type="bibr" rid="B16">16</xref>]. The binding energy of core electronic levels also generally shift to energies that are lower (larger in absolute value) than those of the bulk as size decreases or when the atom locates around under-coordinated sites such as surface, edge, and nano-islands [<xref ref-type="bibr" rid="B17">17</xref>].</p>
<p>The involvement of the broken bonds and the non-bonding states make the materials at the nanoscale much complicated and hardly to be understood. Some experimental and theoretical studies have been conducted on size dependent properties of noble metal nanostructures, electronic structure of metal nanoparticles and GNRs, and the water anomalies in literature. However, fundamental progress in theory is still lagging far behind the experimental and theoretical exploitations. Recently, bond order-length-strength (BOLS) correlation derived non-bonding electron polarization theory [<xref ref-type="bibr" rid="B16">16</xref>, <xref ref-type="bibr" rid="B18">18</xref>, <xref ref-type="bibr" rid="B19">19</xref>] were proposed to address those problems and obtained great success [<xref ref-type="bibr" rid="B20">20</xref>, <xref ref-type="bibr" rid="B21">21</xref>]. Under the light shed by BOLS theory, we will explore the mysteries brought by broken bond and non-bond of nanomaterial.</p>
<p>Multi-scale computational modeling of materials is becoming a reliable tool to underpin scientific investigations and to complement traditional theoretical and experimental approaches [<xref ref-type="bibr" rid="B22">22</xref>&#x02013;<xref ref-type="bibr" rid="B24">24</xref>]. At the atomic scale, the <italic>ab initio</italic> approaches were developed to model the material purely based on Quantum mechanics law without fitting from experimental data, such as Hartree-Forck theory and density functional theory (DFT) [<xref ref-type="bibr" rid="B25">25</xref>, <xref ref-type="bibr" rid="B26">26</xref>]. At the large scale above &#x0007E;1,000 atoms, the classical force field of MD is fit for simulations. Tight-binding (TB) approach, although developed earlier than DFT [<xref ref-type="bibr" rid="B27">27</xref>], is developing fast in recent decades and widely used in the investigation of system of 100&#x02013;1,000 atoms as reviewed in articles [<xref ref-type="bibr" rid="B28">28</xref>&#x02013;<xref ref-type="bibr" rid="B30">30</xref>]. However, under-coordinated modifications at edge, defect and surface sites to conventional TB method are usually neglected in low-dimensional systems or investigated case by case [<xref ref-type="bibr" rid="B31">31</xref>, <xref ref-type="bibr" rid="B32">32</xref>].</p>
<p>Edge modification can be presented in the edge Hamiltonian matrix element as a function of distance between edge atoms by fitting distance-dependent TB parameters [<xref ref-type="bibr" rid="B33">33</xref>]. Edge effects were also modeled for a specific system, like graphene, from the geometrical perturbation [<xref ref-type="bibr" rid="B34">34</xref>], curvature-strain [<xref ref-type="bibr" rid="B35">35</xref>, <xref ref-type="bibr" rid="B36">36</xref>], and enhancement of hopping integral at edge [<xref ref-type="bibr" rid="B37">37</xref>] and so on.</p>
<p>By extending the BOLS mechanics, a quantum theory of BOLS-corrected Hubbard model (BOLS-HM) was proposed with applications for 2D materials graphene, phosphorene, and antimonene nanoribbons of electronic, lattice vibronic, catalytic, and magnetic properties of the material under consideration.</p>
<p>In this themed report, we firstly reviewed the current progresses of TB calculations (conventional TB, density functional TB, spin-polarized Hubbard model, and edge states), and proposed our BOLS-HM model. Then, the applications of BOLS-HM model on the electronic structure and magnetism of GNRs, E<sub>G</sub> expansion of phosphorene, and electronic properties of antimonene were reviewed and discussed. Finally, we summarized the themed report.</p>
</sec>
<sec id="s2">
<title>Principle</title>
<p>The starting point for any discussion of the tight-binding method for electronic and atomic structure calculations must be Slater and Koster [<xref ref-type="bibr" rid="B27">27</xref>]. TB method is developing fast in recent decades and widely used in the investigation of large system as reviewed in articles [<xref ref-type="bibr" rid="B28">28</xref>&#x02013;<xref ref-type="bibr" rid="B30">30</xref>] and books [<xref ref-type="bibr" rid="B38">38</xref>, <xref ref-type="bibr" rid="B39">39</xref>]. TB method is a parameterized and semi-empirical calculation method which can deal with much larger system with typically two to three orders of magnitude faster than <italic>ab initio</italic> methods do [<xref ref-type="bibr" rid="B29">29</xref>]. TB parameters and codes have been developed by various groups, such as Harrison [<xref ref-type="bibr" rid="B40">40</xref>], Papaconstantopoulos with NRL-TB code [<xref ref-type="bibr" rid="B28">28</xref>], Bowler with DensEL code [<xref ref-type="bibr" rid="B41">41</xref>], and Seifert with DFTB code [<xref ref-type="bibr" rid="B30">30</xref>, <xref ref-type="bibr" rid="B42">42</xref>].</p>
<p>Table <xref ref-type="table" rid="T1">1</xref> summarized the TB methods of Slater and Koster [<xref ref-type="bibr" rid="B27">27</xref>], Harrison [<xref ref-type="bibr" rid="B40">40</xref>], Papaconstantopoulos with NRL-TB code [<xref ref-type="bibr" rid="B28">28</xref>], Bowler with DensEL code [<xref ref-type="bibr" rid="B41">41</xref>], and Seifert with DFTB code [<xref ref-type="bibr" rid="B30">30</xref>, <xref ref-type="bibr" rid="B42">42</xref>]. The comparison is considered from basis set, applicable system, parameterization of Hamiltonian matrix, electron-electron interaction, and self-consistent charges. It can be seen from the table that in early years (before 1990&#x00027;s) TB parameters were mainly fit from experiments but now are mainly from DFT results. There still lacks a TB method designed to nanomaterial and under-coordination system.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p><bold>Comparison of current TB methods with BOLS-HM</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th/>
<th valign="top" align="left"><bold>Basis set</bold></th>
<th valign="top" align="left"><bold>System</bold></th>
<th valign="top" align="left"><bold>Hamiltonian matrix parameter</bold></th>
<th valign="top" align="left"><bold>Electron-electron interaction</bold></th>
<th valign="top" align="left"><bold>Self-consistent charge</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Slater</td>
<td valign="top" align="left">L&#x000F6;wdin orthogonal orbitals</td>
<td valign="top" align="left">Periodic system</td>
<td valign="top" align="left">&#x0201C;Disposable constants&#x0201D; firstly proposed</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">No</td>
</tr>
<tr>
<td valign="top" align="left">Harrison</td>
<td valign="top" align="left">LCAO; Augmented plane wave for metals</td>
<td valign="top" align="left">Periodic system</td>
<td valign="top" align="left">Fit from experiments</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">No</td>
</tr>
<tr>
<td valign="top" align="left">NRL-TB code</td>
<td valign="top" align="left">Augmented plane wave</td>
<td valign="top" align="left">Periodic system</td>
<td valign="top" align="left">Fit from DFT</td>
<td valign="top" align="left">Embedded atom method</td>
<td valign="top" align="left">No</td>
</tr>
<tr>
<td valign="top" align="left">DensEL code</td>
<td valign="top" align="left">LCAO</td>
<td valign="top" align="left">Surface structure</td>
<td valign="top" align="left">Fit from DFT</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">No</td>
</tr>
<tr>
<td valign="top" align="left">DFTB code</td>
<td valign="top" align="left">LCAO</td>
<td valign="top" align="left">Periodic and non-periodic system</td>
<td valign="top" align="left">Fit from DFT</td>
<td valign="top" align="left">Electron repulsion and exchange-correlation</td>
<td valign="top" align="left">Yes</td>
</tr>
<tr>
<td valign="top" align="left">BOLS-HM</td>
<td valign="top" align="left">LCAO</td>
<td valign="top" align="left">Nanomaterial under-coordination system</td>
<td valign="top" align="left">Fit from BOLS correlation</td>
<td valign="top" align="left">Hubbard repulsion term</td>
<td valign="top" align="left">Yes</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>The main advantage of BOLS-HM is that it is designed for nanomaterial and under-coordination systems, since BOLS correlation theory focuses on the bond length, energy, elastic, electronic, optic, dielectric, and other properties of under-coordination system. Besides, BOLS-HM not only improves the Hamiltonian matrix element, it can also predict the physical and chemical properties of nanostructures such as the splitting between the bonding and anti-bonding band of GNR and of valence <italic>d</italic> band of noble metals, induced by the enhancement of Hamiltonian integrals and by the localized electron-electron repulsions.</p>
<sec>
<title>Conventional TB</title>
<p>TB is firstly based on two assumptions: Born-Oppenheimer approximation [<xref ref-type="bibr" rid="B38">38</xref>, <xref ref-type="bibr" rid="B39">39</xref>] and Single electron approximation [<xref ref-type="bibr" rid="B27">27</xref>]. Without considering electron-electron interaction, the simplest TB Hamiltonian of one electron in a unit cell is written as:</p>
<disp-formula id="E1"><label>(1)</label><mml:math id="M1"><mml:mrow><mml:msubsup><mml:mi>H</mml:mi><mml:mn>0</mml:mn><mml:mrow><mml:mtext>TB</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:mfrac><mml:mrow><mml:msup><mml:mi>&#x0210F;</mml:mi><mml:mn>2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:mn>2</mml:mn><mml:mi>m</mml:mi></mml:mrow></mml:mfrac><mml:msup><mml:mo>&#x02207;</mml:mo><mml:mn>2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mi>V</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:msub><mml:mi>H</mml:mi><mml:mrow><mml:mi>a</mml:mi><mml:mi>t</mml:mi><mml:mi>o</mml:mi><mml:mi>m</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>+</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mtext>cry</mml:mtext></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:math></disp-formula>
<p>where the first term is the kinetic energy <italic>T</italic> of electron and <italic>V</italic>(<bold>r</bold>) is the periodic potential from ion-cores, which can be divided into atomic potential <italic>V</italic><sub>atom</sub>(<bold>r</bold>) and crystal potential <italic>V</italic><sub>cry</sub>(<bold>r</bold>).</p>
<p>As Slater and Koster stated in the paper [<xref ref-type="bibr" rid="B27">27</xref>]:</p>
<disp-quote>
<p>&#x0201C;In fact, if we were going to use <italic>n</italic> atomic orbitals per unit cell, we could make any <italic>n</italic> linear combinations of the original orbitals, form Bloch sums of these modified orbitals, and solve a secular problem using the modified Bloch sums, and in every case come out with the same answer in the end. The advantage in one choice of atomic orbitals over another is convenience in calculating the matrix components or solving the secular equation&#x02026;&#x0201D;</p>
</disp-quote>
<p>Thus, choosing a proper basis set, although cannot change the final answer, can indeed make the calculation much simpler and of more efficiency. Bloch [<xref ref-type="bibr" rid="B43">43</xref>] provided the formal mechanism for dealing with periodic systems, such as crystals, by means of the Bloch sum in form of LCAO.</p>
<p>Solution of energy states of Equation (1) is transferred to an eigenvalue problem of: <inline-formula><mml:math id="M2"><mml:msubsup><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>H</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mstyle class="text"><mml:mtext>TB</mml:mtext></mml:mstyle></mml:mrow></mml:msubsup><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>c</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mrow><mml:mi>&#x003B5;</mml:mi></mml:mrow><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle></mml:mrow></mml:msub><mml:mstyle mathvariant="bold"><mml:mtext>S</mml:mtext></mml:mstyle><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>c</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle></mml:mrow></mml:msub></mml:math></inline-formula>, with overlap integral matrix <inline-formula><mml:math id="M3"><mml:msub><mml:mrow><mml:mi>S</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>v</mml:mi><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo>&#x0222B;</mml:mo><mml:msubsup><mml:mrow><mml:mi>&#x003D5;</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x000B7;</mml:mo><mml:msub><mml:mrow><mml:mi>&#x003D5;</mml:mi></mml:mrow><mml:mrow><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msub><mml:mstyle class="text"><mml:mtext mathvariant="bold">d</mml:mtext></mml:mstyle><mml:mi>r</mml:mi></mml:math></inline-formula> and Hamiltonian matrix element:</p>
<disp-formula id="E2"><label>(2)</label><mml:math id="M4"><mml:mrow><mml:msubsup><mml:mi>H</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:mi>v</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mrow><mml:mrow><mml:mtext>TB</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:mo>{</mml:mo> <mml:mrow><mml:mtable columnalign='left'><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msub><mml:mo>&#x00394;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mi>v</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mtext>if</mml:mtext><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>v</mml:mi><mml:mo>=</mml:mo><mml:mi>v</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:mi>v</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mtext>if&#x02009;</mml:mtext><mml:mi>i</mml:mi><mml:mtext>&#x02009;and&#x02009;</mml:mtext><mml:mi>j</mml:mi><mml:mtext>&#x02009;are&#x000A0;neighbors</mml:mtext></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mn>0</mml:mn></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mtext>otherwise</mml:mtext></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>where, <italic>t<sub>ijvv&#x02032;</sub></italic> is the off-diagonal element between <italic>v</italic><sup>th</sup> orbital at <italic>i</italic><sup>th</sup> atom and <italic>v</italic><sup>&#x02032;th</sup> orbital at the equivalent nearest <italic>j</italic><sup>th</sup> atoms. However, the atomic orbitals, &#x003D5;<sub><italic>v,i</italic></sub>(<bold>r</bold> &#x02212; <bold>R</bold><sub><italic>i</italic></sub>), are not ideal for the purposes of analysis, as the orbitals on different atomic sites are not orthogonal to one another.</p>
<p>L&#x000F6;wdin [<xref ref-type="bibr" rid="B44">44</xref>] provided a scheme for creating an orthogonal basis set, L&#x000F6;wdin functions, which are defined as</p>
<disp-formula id="E3"><label>(3)</label><mml:math id="M5"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mrow><mml:mi>v</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mtext>&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>v</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:munder><mml:mrow><mml:msubsup><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>S</mml:mi></mml:mstyle><mml:mrow><mml:mi>i</mml:mi><mml:mi>v</mml:mi><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msubsup><mml:msub><mml:mi>&#x003D5;</mml:mi><mml:mrow><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:mstyle></mml:mrow></mml:math></disp-formula>
<p>where <bold>S</bold> is the overlap matrix.</p>
<p>While Bloch functions are periodic and non-localized, Wannier functions [<xref ref-type="bibr" rid="B45">45</xref>] construct orthogonal &#x0201C;atomic&#x0201D; wave functions which can take non-periodic terms into account. Wannier function can be expressed as Wannier [<xref ref-type="bibr" rid="B45">45</xref>]:</p>
<disp-formula id="E4"><label>(4)</label><mml:math id="M6"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mrow><mml:mi>v</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:msup><mml:mi>N</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msup><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>k</mml:mi></mml:mstyle></mml:munder><mml:mrow><mml:mi>exp</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mo>&#x02212;</mml:mo><mml:mtext>i</mml:mtext><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>k</mml:mi></mml:mstyle><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:msub><mml:mi>&#x003C8;</mml:mi><mml:mrow><mml:mi>v</mml:mi><mml:mo>,</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>k</mml:mi></mml:mstyle></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mstyle></mml:mrow></mml:math></disp-formula>
<p>where &#x003C8;<sub><italic>v</italic>,<bold>k</bold></sub>(<bold>r</bold>) is the Bloch sum.</p>
<p>Unlike other basis set which are expanded in <bold>k</bold>-space, Wannier function is a real-space basis set and can be a powerful tool in the study of the electronic and dielectric properties of materials [<xref ref-type="bibr" rid="B45">45</xref>].</p>
<p>Besides the above, many other excellent basis sets have also been proposed and widely applied in the electronic structure modeling of materials, such as linear muffin-tin orbital (LMTO) proposed by Slater [<xref ref-type="bibr" rid="B46">46</xref>] and used in LMTO-TB calculation [<xref ref-type="bibr" rid="B47">47</xref>, <xref ref-type="bibr" rid="B48">48</xref>] and Gaussian-type orbital (GTO) proposed by Boys [<xref ref-type="bibr" rid="B49">49</xref>]. To choose a proper basis set for a system is an important part in saving time and improving the efficiency and accuracy in the electronic structure calculations.</p>
</sec>
<sec>
<title>Density-functional TB method</title>
<p>As discussed, the single-electron Hamiltonian <inline-formula><mml:math id="M7"><mml:msubsup><mml:mrow><mml:mi>H</mml:mi></mml:mrow><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mstyle class="text"><mml:mtext>TB</mml:mtext></mml:mstyle></mml:mrow></mml:msubsup></mml:math></inline-formula> only considers the potential energy from ion cores in crystal and neglects the interaction among electrons.</p>
<p>The total energy of a system of <italic>M</italic> electrons in the field of <italic>N</italic> nuclei at positions <bold>R</bold><sub><italic>i</italic></sub> may be written within DFT as a functional of a charge density <italic>n</italic>(<bold>r</bold>) [<xref ref-type="bibr" rid="B50">50</xref>]:</p>
<disp-formula id="E5"><label>(5)</label><mml:math id="M8"><mml:mtable columnalign='left'><mml:mtr><mml:mtd><mml:mi>E</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mi>v</mml:mi></mml:munder><mml:mrow><mml:mo>&#x0003C;</mml:mo><mml:msub><mml:mo>&#x003A8;</mml:mo><mml:mi>v</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mstyle><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:mo>&#x02212;</mml:mo><mml:mfrac><mml:mrow><mml:msup><mml:mi>&#x0210F;</mml:mi><mml:mn>2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:mn>2</mml:mn><mml:mi>m</mml:mi></mml:mrow></mml:mfrac><mml:msup><mml:mo>&#x02207;</mml:mo><mml:mn>2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mi>V</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo><mml:mo>+</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:mn>2</mml:mn></mml:mfrac><mml:mstyle displaystyle='true'><mml:mrow><mml:mo>&#x0222B;</mml:mo><mml:mrow><mml:mfrac><mml:mrow><mml:mi>n</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mstyle><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:mrow><mml:mo>|</mml:mo> <mml:mrow><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo>&#x02212;</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mstyle></mml:mrow> <mml:mo>|</mml:mo></mml:mrow></mml:mrow></mml:mfrac></mml:mrow></mml:mrow></mml:mstyle><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>d</mml:mi><mml:mi>r</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mstyle><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:msub><mml:mo>&#x003A8;</mml:mo><mml:mi>v</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo><mml:mo>&#x0003E;</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mo>+</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:msub><mml:mi>E</mml:mi><mml:mrow><mml:mtext>XC</mml:mtext></mml:mrow></mml:msub><mml:mo stretchy='false'>[</mml:mo><mml:mi>n</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo><mml:mo stretchy='false'>]</mml:mo><mml:mo>+</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:mn>2</mml:mn></mml:mfrac><mml:mstyle displaystyle='true'><mml:munderover><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mi>N</mml:mi></mml:munderover><mml:mrow><mml:mfrac><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>Z</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>i</mml:mi></mml:msub><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>j</mml:mi></mml:msub><mml:mo stretchy='false'>&#x0007C;</mml:mo></mml:mrow></mml:mfrac></mml:mrow></mml:mstyle></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
<p>where the first sum includes kinetic energy <italic>T</italic> and potential energy <italic>V</italic>(<bold>r</bold>) from crystal ion-cores and potential energy from other electrons <italic>V</italic><sub>e</sub>, the second term is the exchange-correlation (XC) contribution, and the last term covers the ion-ion core repulsion, <italic>E</italic><sub><italic>rep</italic></sub>.</p>
<p>For 0<sup>th</sup> order density-functional tight-binding (DFTB), charge-density <italic>n</italic>(<bold>r</bold>) which should be solved by self-consistent field (SCF) method in DFT is now approximated by the input charge-density <italic>n</italic><sub>0</sub>(<bold>r</bold>). And the total energy <inline-formula><mml:math id="M9"><mml:msubsup><mml:mrow><mml:mi>E</mml:mi></mml:mrow><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mstyle class="text"><mml:mtext>DFTB</mml:mtext></mml:mstyle></mml:mrow></mml:msubsup></mml:math></inline-formula> becomes,</p>
<disp-formula id="E6"><label>(6)</label><mml:math id="M10"><mml:mtable columnalign='left'><mml:mtr><mml:mtd><mml:msubsup><mml:mi>E</mml:mi><mml:mn>0</mml:mn><mml:mrow><mml:mtext>DFTB</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mi>v</mml:mi></mml:munder><mml:mrow><mml:mo>&#x0003C;</mml:mo><mml:msub><mml:mo>&#x003A8;</mml:mo><mml:mi>v</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mstyle><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:mo>&#x02212;</mml:mo><mml:mfrac><mml:mrow><mml:msup><mml:mi>&#x0210F;</mml:mi><mml:mn>2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:mn>2</mml:mn><mml:mi>m</mml:mi></mml:mrow></mml:mfrac><mml:msup><mml:mo>&#x02207;</mml:mo><mml:mn>2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mi>V</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo><mml:mo>+</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:mn>2</mml:mn></mml:mfrac><mml:mstyle displaystyle='true'><mml:mrow><mml:mo>&#x0222B;</mml:mo><mml:mrow><mml:mfrac><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mn>0</mml:mn></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mstyle><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:mrow><mml:mo>|</mml:mo> <mml:mrow><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo>&#x02212;</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mstyle></mml:mrow> <mml:mo>|</mml:mo></mml:mrow></mml:mrow></mml:mfrac></mml:mrow></mml:mrow></mml:mstyle><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>d</mml:mi><mml:mi>r</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mstyle></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mo>+</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mtext>XC</mml:mtext></mml:mrow></mml:msub><mml:mo stretchy='false'>[</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mn>0</mml:mn></mml:msub><mml:mo stretchy='false'>]</mml:mo><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:msub><mml:mo>&#x003A8;</mml:mo><mml:mi>v</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo><mml:mo>&#x0003E;</mml:mo><mml:mo>+</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mfrac><mml:mn>1</mml:mn><mml:mn>2</mml:mn></mml:mfrac><mml:mstyle displaystyle='true'><mml:munderover><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow><mml:mi>N</mml:mi></mml:munderover><mml:mrow><mml:mfrac><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>Z</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>i</mml:mi></mml:msub><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>j</mml:mi></mml:msub><mml:mo stretchy='false'>&#x0007C;</mml:mo></mml:mrow></mml:mfrac></mml:mrow></mml:mstyle></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mi>v</mml:mi></mml:munder><mml:mrow><mml:mo>&#x0003C;</mml:mo><mml:msub><mml:mo>&#x003A8;</mml:mo><mml:mi>v</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mstyle><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:msubsup><mml:mi>H</mml:mi><mml:mn>0</mml:mn><mml:mrow><mml:mtext>KS</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:msub><mml:mo>&#x003A8;</mml:mo><mml:mi>v</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo><mml:mo>&#x0003E;</mml:mo><mml:mo>+</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:msub><mml:mi>E</mml:mi><mml:mrow><mml:mtext>rep</mml:mtext></mml:mrow></mml:msub></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
<p>This non-self-consistent-charge (non-SCC) DFTB approach has been successfully applied to various problems in different systems and materials [<xref ref-type="bibr" rid="B33">33</xref>]. Moreover, second-order SCC-DFTB [<xref ref-type="bibr" rid="B50">50</xref>] has also been included <italic>n</italic>(<bold>r</bold>) &#x0003D; <italic>n</italic><sub>0</sub>(<bold>r</bold>) &#x0002B; &#x003B4;<italic>n</italic>(<bold>r</bold>) in the corresponding Hamiltonian terms in Equation (6), and also been widely used and accepted [<xref ref-type="bibr" rid="B51">51</xref>]. However, DFTB [<xref ref-type="bibr" rid="B50">50</xref>] is purely parameterized by DFT results without considering experimental results and complicated to be realized.</p>
</sec>
<sec>
<title>Spin-polarized hubbard model</title>
<p>In incompletely filled electron shells with narrow energy bands, the correlations between electrons are too strong to be neglected as done in conventional TB. The Coulomb repulsion between electrons at the same atomic site will change the band structure significantly. The Hubbard model, named after Hubbard [<xref ref-type="bibr" rid="B52">52</xref>], includes the onsite repulsion which stems from the Coulomb repulsion between electrons at each atomic site in Hamiltonian. Using the real-space Wannier functions <italic>a</italic><sub><italic>v,i</italic></sub>(<bold>r</bold> &#x02212; <bold>R</bold><sub><italic>i</italic></sub>) as basis set, Hamiltonian is expressed in second quantization form as [<xref ref-type="bibr" rid="B52">52</xref>]:</p>
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mathsize='normal'><mml:mi>r</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mstyle><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>l</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo>&#x02212;</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mstyle></mml:mrow></mml:mfrac></mml:mrow></mml:mrow></mml:mstyle></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>d</mml:mi><mml:mi>r</mml:mi><mml:mi>d</mml:mi></mml:mstyle><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo>&#x02032;</mml:mo></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
<p>where spin sign &#x003C3; &#x0003D; &#x000B1;1/2 and <inline-formula><mml:math id="M12"><mml:msubsup><mml:mrow><mml:mi>c</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow><mml:mrow><mml:mo>&#x0002B;</mml:mo></mml:mrow></mml:msubsup><mml:mstyle class="text"><mml:mtext>and</mml:mtext></mml:mstyle><mml:msub><mml:mrow><mml:mi>c</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula> are the creation and annihilation operator in Wannier representation, indicating to create and to annihilate an electron at the lattice vector <bold>R</bold><sub><italic>i</italic></sub>. The first and second terms are the same as the <inline-formula><mml:math id="M13"><mml:msubsup><mml:mrow><mml:mi>H</mml:mi></mml:mrow><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mstyle class="text"><mml:mtext>TB</mml:mtext></mml:mstyle></mml:mrow></mml:msubsup></mml:math></inline-formula>. The last term is the inter-electron potential energy, which is usually a multi-center integral. Hubbard [<xref ref-type="bibr" rid="B52">52</xref>] indicated that the single center integral <italic>U</italic> &#x0003D;&#x0003C; <italic>ii</italic>, &#x003C3;|1/<bold>r</bold>|<italic>ii</italic>,&#x02212;&#x003C3; &#x0003E; is about 10 eV, much greater than other two-center, three-center integrals. Thus, the simplified Hamiltonian becomes:</p>
<disp-formula id="E8"><label>(8)</label><mml:math id="M14"><mml:mrow><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:munder><mml:mrow><mml:msub><mml:mo>&#x00394;</mml:mo><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mstyle><mml:msubsup><mml:mi>c</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow><mml:mo>+</mml:mo></mml:msubsup><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub><mml:mtext>&#x02009;</mml:mtext><mml:mo>+</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mo>&#x0003C;</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>&#x0003E;</mml:mo><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:munder><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msubsup><mml:mi>c</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow><mml:mo>+</mml:mo></mml:msubsup><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msubsup><mml:mi>c</mml:mi><mml:mrow><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow><mml:mo>+</mml:mo></mml:msubsup><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:munder><mml:mi>U</mml:mi></mml:mstyle><mml:msub><mml:mi>n</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>n</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mo>&#x02212;</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></disp-formula>
<p>where <inline-formula><mml:math id="M15"><mml:msub><mml:mrow><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msubsup><mml:mrow><mml:mi>c</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow><mml:mrow><mml:mo>&#x0002B;</mml:mo></mml:mrow></mml:msubsup><mml:msub><mml:mrow><mml:mi>c</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula> represents the particle-number operator at site <bold>R</bold><sub><italic>i</italic></sub> and spin <bold>&#x003C3;</bold>. Equation (8) is called Hubbard model with last term <italic>Un</italic><sub><italic>i</italic></sub>&#x02191;<italic>n</italic><sub><italic>i</italic></sub>&#x02193;.</p>
<p>Hubbard model plays a significant role in the conductor-insulator transition of metal and magnetism of narrow band [<xref ref-type="bibr" rid="B53">53</xref>]. For example, Hubbard-Mott insulators [<xref ref-type="bibr" rid="B54">54</xref>] are a class of materials that should conduct electricity under conventional band theories, but are insulators when measured (particularly at low temperatures). This effect is due to electron-electron interactions in narrow bands which are not considered in conventional band theory. The Coulomb repulsions of semi-localized electrons in narrow bands are strong enough to split the band into two subbands and generate the Mott band gap [<xref ref-type="bibr" rid="B55">55</xref>]. This situation is very similar to nanomaterials with limited quantity of electrons and semi-localized electrons at edge and surfaces.</p>
</sec>
<sec>
<title>Shockley and tamm edge states</title>
<p>At the surface, the termination of a crystal obviously causes deviation from perfect periodicity. Surface states that are calculated in the framework of near-free electron approximation are called Shockley states [<xref ref-type="bibr" rid="B56">56</xref>] and those from a tight-binding model are called Tamm states [<xref ref-type="bibr" rid="B57">57</xref>]. However, there is no real physical distinction between the two terms, only the mathematical approach in describing surface states is different.</p>
<p>A simplified model of the crystal potential in one dimension is used: the periodic crystal potential jumps abruptly to the vacuum level <italic>V</italic><sub>g</sub> at surface, as shown in Figure <xref ref-type="fig" rid="F1">1</xref>.</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p><bold>Simplified one-dimensional potential model</bold>.</p></caption>
<graphic xlink:href="fphy-05-00013-g0001.tif"/>
</fig>
<p>The one-dimensional surface wave function at <italic>E</italic> state can be expressed as:</p>
<disp-formula id="E9"><label>(9)</label><mml:math id="M16"><mml:mrow><mml:mo>&#x003A8;</mml:mo><mml:mo stretchy='false'>(</mml:mo><mml:mi>x</mml:mi><mml:mo stretchy='false'>)</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mi>A</mml:mi><mml:mi>exp</mml:mi><mml:mrow><mml:mo>[</mml:mo> <mml:mrow><mml:mo>&#x02212;</mml:mo><mml:msqrt><mml:mrow><mml:mn>2</mml:mn><mml:mi>m</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mi>g</mml:mi></mml:msub><mml:mo>&#x02212;</mml:mo><mml:mi>E</mml:mi><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:msqrt><mml:mfrac><mml:mi>x</mml:mi><mml:mi>&#x0210F;</mml:mi></mml:mfrac></mml:mrow> <mml:mo>]</mml:mo></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>The Shockley states and the Tamm states are suitable to describe periodical systems. However, the simplification of the stepped potential prevents the method applied in nanomaterials or imperfect surface where the change of multi-well potential at surface should be considered.</p>
</sec>
<sec>
<title>BOLS-corrected hubbard model</title>
<p>The BOLS is an extension of the &#x0201C;atomic coordination number (CN)&#x02014;atomic size&#x0201D; correlation mechanism of Goldschmidt, Pauling, and Feibelman to energy domain. The shorter and stronger bonds between undercoordinated atoms provide significant modification to atomic cohesive energy (<italic>E</italic><sub><italic>c</italic></sub>) and associated properties when the fraction of the undercoordinated atoms is increased. The consequence of the broken bond follows the BOLS correlation [<xref ref-type="bibr" rid="B14">14</xref>, <xref ref-type="bibr" rid="B16">16</xref>]:</p>
<disp-formula id="E10"><label>(10)</label><mml:math id="M17"><mml:mrow><mml:mrow><mml:mo>{</mml:mo> <mml:mrow><mml:mtable columnalign='left'><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mo>=</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi>B</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>2</mml:mn><mml:mo>/</mml:mo><mml:mrow><mml:mo>{</mml:mo> <mml:mrow><mml:mn>1</mml:mn><mml:mo>+</mml:mo><mml:mi>exp</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mrow><mml:mo>[</mml:mo> <mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mn>12</mml:mn><mml:mo>&#x02212;</mml:mo><mml:mi>z</mml:mi></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:mo>/</mml:mo><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mn>8</mml:mn><mml:mi>z</mml:mi></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow> <mml:mo>]</mml:mo></mml:mrow></mml:mrow> <mml:mo>}</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mtext>&#x000A0;</mml:mtext></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Bond&#x02009;Strain</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msubsup><mml:mi>c</mml:mi><mml:mi>z</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mo>=</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi>B</mml:mi></mml:msub><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Bond&#x02009;Strength</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mrow><mml:mi>z</mml:mi><mml:mi>B</mml:mi></mml:mrow></mml:msub><mml:msubsup><mml:mi>c</mml:mi><mml:mi>z</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mo>=</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>c</mml:mi></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mrow><mml:mi>B</mml:mi><mml:mi>c</mml:mi></mml:mrow></mml:msub><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Atomic&#x02009;Cohesive&#x02009;&#x02009;Energy</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>where <italic>m</italic> is the bond nature indicator; subscript <italic>i</italic> and B denote the <italic>i</italic><sup>th</sup> under-coordinated atom and bulk value, respectively. <italic>z</italic><sub>z<sub>B</sub></sub> &#x0003D; <italic>z</italic>/<italic>z</italic><sub>B</sub> is the reduce coordination with <italic>z</italic><sub>B</sub> &#x0003D; 12 being the bulk standard. First equation indicates that: as the CN z decreases, bond length (<italic>d</italic><sub>i</sub>) becomes shorter compared with bulk value (<italic>d</italic><sub>B</sub>); the curve of z-d dependence is illustrated in Figure <xref ref-type="fig" rid="F2">2A</xref>, compared with measurements of Au particles, carbon nanotubes, Pt, Ir, Ti, Zr, and Zn chains [<xref ref-type="bibr" rid="B14">14</xref>]. The second equation indicates the single bond energy increases by <inline-formula><mml:math id="M18"><mml:msubsup><mml:mrow><mml:mi>c</mml:mi></mml:mrow><mml:mrow><mml:mi>z</mml:mi></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> as length decreases. The atomic cohesive energy <italic>E</italic><sub>c</sub> will change as the sum over all the bonds of the atom.</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p><bold>(A)</bold> The BOLS correlation mechanism (solid line) formulated from the atomic &#x0201C;CN-radius.&#x0201D; The formulation has been further verified by the measurement (scattered symbols) from Au particles, carbon nanotubes, Pt, Ir, Ti, Zr, and Zn chains [<xref ref-type="bibr" rid="B14">14</xref>]. <bold>(B)</bold> Schematic illustration of the broken-bond induced potential trapping at the terminating edges up to two inter-atomic layers [<xref ref-type="bibr" rid="B58">58</xref>, <xref ref-type="bibr" rid="B59">59</xref>]. Reprinted with permission of Sun [<xref ref-type="bibr" rid="B14">14</xref>].</p></caption>
<graphic xlink:href="fphy-05-00013-g0002.tif"/>
</fig>
<p>Figure <xref ref-type="fig" rid="F2">2B</xref> illustrates the BOLS correlation and the quantum trapping of potential and energy [<xref ref-type="bibr" rid="B14">14</xref>, <xref ref-type="bibr" rid="B16">16</xref>]. Instead of single potential well of Quantum confinement, multi-well quantum trapping happens to nanostructures. At the edge and surface of nanostructures (particle, rod, chain, etc.), the remaining bonds of the under-coordinated atoms to contract spontaneously with an association of bond strength gain up to two inter-atomic layers. The localized strain in turn causes potential well depression with a consequence of localized densification of charge, energy and mass, which is called as Quantum trapping of the charge and energy.</p>
<p>Any detectable quantity localized nearby the broken bonds can be formulated by the above parameters of bond strain (<italic>d</italic>), bond energy (<italic>E</italic>), and atomic cohesive energy (<italic>E</italic><sub>C</sub>) change as shown in Equation (10). The BOLS theory has enabled unification of the unusual performance of detectable quantities <italic>Q</italic>(<italic>z</italic>), such as mechanical, thermal, acoustic, chemical, electronic, dielectric, ferroelectric, optic, and magnetic properties and the transport dynamics of electrons, phonons, and photons at the skins of nanostructures of various shapes, as summarized in Sun [<xref ref-type="bibr" rid="B14">14</xref>] and listed in Table <xref ref-type="table" rid="T2">2</xref>.</p>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p><bold>Formulation of the measurable quantities on the bonding parameters [<xref ref-type="bibr" rid="B14">14</xref>]</bold>.</p></caption>
<table frame="hsides" rules="groups">
<tbody>
<tr>
<td valign="top" align="left">Detectable quantity (<italic>Q</italic>)</td>
<td valign="top" align="left"><italic>q</italic>(<italic>z, m, d, E<sub><italic>i</italic></sub></italic>)</td>
</tr>
<tr>
<td valign="top" align="left">Critical temperature (<italic>T<sub><italic>c</italic></sub></italic>)</td>
<td valign="top" align="left">&#x0221D;<italic>zE<sub><italic>i</italic></sub></italic></td>
</tr>
<tr>
<td valign="top" align="left">Young&#x00027;s modulus (<italic>Y</italic>)</td>
<td valign="top" align="left">&#x0221D;<italic>E<sub><italic>i</italic></sub>d</italic><sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left">Core level shift (<italic>E<sub><italic>v</italic></sub></italic>(<italic>z</italic>)&#x02212;<italic>E<sub><italic>v</italic></sub></italic>(0))</td>
<td valign="top" align="left">&#x0221D;<italic>E<sub><italic>i</italic></sub></italic></td>
</tr>
<tr>
<td valign="top" align="left">Raman optical shift(&#x003C9;)</td>
<td valign="top" align="left"><inline-formula><mml:math id="M19"><mml:mo>&#x0221D;</mml:mo><mml:mfrac><mml:mrow><mml:mi>z</mml:mi></mml:mrow><mml:mrow><mml:mi>d</mml:mi></mml:mrow></mml:mfrac><mml:msup><mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mi>E</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:mi>&#x003BC;</mml:mi></mml:mrow></mml:mfrac></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow><mml:mrow><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></td>
</tr>
</tbody>
</table>
</table-wrap>
<p><italic>Q</italic> of a nanostructure can be expressed as a function <italic>q</italic>(<italic>m, z, d, E</italic><sub>B</sub>), as sampled in Table <xref ref-type="table" rid="T2">2</xref>. Properties of a nanosolid with size (<italic>K</italic>) depends on shape (&#x003C4;), and bond nature (<italic>m</italic>) [<xref ref-type="bibr" rid="B16">16</xref>, <xref ref-type="bibr" rid="B60">60</xref>]. BOLS correlation has already been verified of bond identities in the metal nanoparticles, metal surfaces, carbon nanotubes, graphene nanoribbons, etc. [<xref ref-type="bibr" rid="B61">61</xref>, <xref ref-type="bibr" rid="B62">62</xref>].</p>
<p>Applying variational principle to the TB Hamiltonian, Hamiltonian matrix element of secular equations becomes:</p>
<disp-formula id="E11"><label>(11)</label><mml:math id="M20"><mml:mrow><mml:msubsup><mml:mi>H</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:mi>v</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mrow><mml:mrow><mml:mi>T</mml:mi><mml:mi>B</mml:mi></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:mo>{</mml:mo> <mml:mrow><mml:mtable columnalign='left'><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mi>j</mml:mi></mml:munder><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mtext>i</mml:mtext><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>k</mml:mi></mml:mstyle><mml:mo>&#x000B7;</mml:mo><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>j</mml:mi></mml:msub><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:mstyle><mml:mstyle displaystyle='true'><mml:mrow><mml:mo>&#x0222B;</mml:mo><mml:mrow><mml:msubsup><mml:mi>&#x003D5;</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>v</mml:mi></mml:mrow><mml:mo>&#x02217;</mml:mo></mml:msubsup><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mrow></mml:mstyle><mml:mtext>&#x02009;</mml:mtext><mml:mo>&#x000B7;</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mtext>&#x02003;</mml:mtext><mml:mo 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mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mtext>&#x02009;&#x02003;</mml:mtext><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>1</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:mo>,</mml:mo><mml:mtext>2</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:mtext>D</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mstyle displaystyle='true'><mml:mrow><mml:mo>&#x0222B;</mml:mo><mml:mrow><mml:msubsup><mml:mi>&#x003D5;</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>v</mml:mi></mml:mrow><mml:mo>&#x02217;</mml:mo></mml:msubsup><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mrow></mml:mstyle><mml:mtext>&#x02009;</mml:mtext><mml:mo>&#x000B7;</mml:mo><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>H</mml:mi><mml:mrow><mml:mtext>atom</mml:mtext></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mtext>cry</mml:mtext></mml:mrow></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>&#x000B7;</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mtext>&#x02003;&#x02009;</mml:mtext><mml:msub><mml:mi>&#x003D5;</mml:mi><mml:mrow><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>R</mml:mi></mml:mstyle><mml:mi>j</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mi>d</mml:mi><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>r</mml:mi></mml:mstyle><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02003;</mml:mtext><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>0</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:mtext>D</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>where <italic>V</italic><sub>cry</sub> is the ion-cores&#x00027; potential subtracting the <italic>i</italic><sup>th</sup> atomic potential.</p>
<p>Writing &#x003D5;<sub><italic>iv</italic></sub>(<bold>r</bold> &#x02212; <bold>R</bold><sub><italic>i</italic></sub>) as |<italic>iv</italic> &#x0003E;, as far as the <italic>v</italic> and <italic>v</italic>&#x02032; orbitals are concerned, the Hamiltonian matrix element <inline-formula><mml:math id="M21"><mml:msubsup><mml:mrow><mml:mi>H</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:msup><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:mi>T</mml:mi><mml:mi>B</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> becomes:</p>
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<p>with,</p>
<disp-formula id="E13"><label>(12)</label><mml:math id="M23"><mml:mrow><mml:mrow><mml:mo>{</mml:mo> <mml:mrow><mml:mtable columnalign='left'><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mi>&#x003B1;</mml:mi><mml:mtext>&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>&#x0003C;</mml:mo><mml:mi>i</mml:mi><mml:mi>v</mml:mi><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mtext>cry</mml:mtext></mml:mrow></mml:msub><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:mi>i</mml:mi><mml:mi>v</mml:mi><mml:mo>&#x0003E;</mml:mo><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Onsite&#x000A0;integral</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msub><mml:mi>&#x003B2;</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:mi>v</mml:mi><mml:mo>&#x02032;</mml:mo></mml:mrow></mml:msub><mml:mtext>&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>&#x0003C;</mml:mo><mml:mi>i</mml:mi><mml:mi>v</mml:mi><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mtext>cry</mml:mtext></mml:mrow></mml:msub><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:mo>&#x02032;</mml:mo><mml:mo>&#x0003E;</mml:mo><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Hopping&#x000A0;integral</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>where the diagonal element &#x00394;<sub><italic>i</italic></sub> consists of the eigen-energy &#x003B5;<sub><italic>v</italic></sub> &#x0003D;&#x0003C; <italic>iv</italic>|<italic>H</italic><sub>atom</sub>|<italic>iv</italic> &#x0003E; of the <italic>v</italic><sup>th</sup> level plus the onsite integral &#x003B1;. <inline-formula><mml:math id="M24"><mml:msub><mml:mrow><mml:mi>&#x003B2;</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:msup><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:msub></mml:math></inline-formula> is the hopping exchange integral of the nearest neighbor <italic>j</italic><sup>th</sup> atom. <italic>f</italic> (<bold>r</bold>) is the periodic factor, <inline-formula><mml:math id="M25"><mml:mstyle displaystyle='true'><mml:munder><mml:mrow><mml:mo>&#x02211;</mml:mo></mml:mrow><mml:mrow><mml:mi>j</mml:mi></mml:mrow></mml:munder></mml:mstyle><mml:msup><mml:mrow><mml:mi>e</mml:mi></mml:mrow><mml:mrow><mml:mstyle class="text"><mml:mtext>i</mml:mtext></mml:mstyle><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle><mml:mo>&#x000B7;</mml:mo><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>R</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>R</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:msup></mml:math></inline-formula>. Since the atomic orbitals of a same atom are orthogonal to each other, <inline-formula><mml:math id="M26"><mml:mo>&#x0003C;</mml:mo><mml:mi>i</mml:mi><mml:mi>v</mml:mi><mml:mo>|</mml:mo><mml:msub><mml:mrow><mml:mi>H</mml:mi></mml:mrow><mml:mrow><mml:mstyle class="text"><mml:mtext>atom</mml:mtext></mml:mstyle></mml:mrow></mml:msub><mml:mo>|</mml:mo><mml:mi>i</mml:mi><mml:msup><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msup><mml:mo>&#x0003E;</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mn>0</mml:mn></mml:math></inline-formula>; also, due to the localization of atomic Hamiltonian, <inline-formula><mml:math id="M27"><mml:mo>&#x0003C;</mml:mo><mml:mi>i</mml:mi><mml:mi>v</mml:mi><mml:mo>|</mml:mo><mml:msub><mml:mrow><mml:mi>H</mml:mi></mml:mrow><mml:mrow><mml:mstyle class="text"><mml:mtext>atom</mml:mtext></mml:mstyle></mml:mrow></mml:msub><mml:mo>|</mml:mo><mml:mi>j</mml:mi><mml:msup><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msup><mml:mo>&#x0003E;</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mn>0</mml:mn></mml:math></inline-formula>.</p>
<sec>
<title>CN imperfection induced quantum trapping</title>
<p>According to the BOLS correlation theory, CN imperfection at edges of low-dimensional nanostructures or at surface skin of 0-D nanoparticles causes the remaining bonds of the under-coordinated atoms to contract spontaneously with an association of bond strength gain, which in turn causes potential well depression with a consequence of localized densification of charge, energy, and mass. BOLS considered that the shorter and stronger bonds between undercoordinated atoms provide significant modification to the Hamiltonian matrix elements.</p>
<p>Since BOLS considered the effective CN of three layers from surface or edges, the modification to potential multi-well at three-layer edges is adopted. As illustrated in Figure <xref ref-type="fig" rid="F2">2A</xref>, the broken-bond induces potential trapping at the terminating edges up to three atomic layers. Compared with the Tamm model approximating original periodic potential jumping to vacuum level, as shown in Figure <xref ref-type="fig" rid="F2">2B</xref>, BOLS consideration of the quantum entrapment of potential multi-well at &#x0201C;surface skin&#x0201D; better describes the real nanomaterial observed experimentally [<xref ref-type="bibr" rid="B58">58</xref>].</p>
</sec>
<sec>
<title>Enhancement of onsite and hopping integrals</title>
<p>In the present BOLS-HM, we took the following relations of effective coordination number (<italic>z</italic>), bond length (<italic>d</italic>), single bond energy (<italic>E</italic>), potential (<italic>V</italic>), and Hamiltonian integrals &#x003B1; an <inline-formula><mml:math id="M28"><mml:msub><mml:mrow><mml:mi>&#x003B2;</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi><mml:mi>v</mml:mi><mml:msup><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:msub></mml:math></inline-formula> into consideration, the modification of under-coordinated site <italic>i</italic> to the bulk <italic>B</italic> can be expressed as,</p>
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columnalign='left'><mml:mrow><mml:mtext>&#x000A0;</mml:mtext></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mtext>&#x02003;&#x02003;&#x02003;</mml:mtext><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>B</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac><mml:mtext>&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:msubsup><mml:mi>C</mml:mi><mml:mi>z</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Hopping&#x000A0;Integral</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mrow></mml:mrow></mml:math></disp-formula>
<p><italic>C</italic><sub><italic>z</italic></sub> is the bond contraction coefficient and <italic>m</italic> is a constant of bond nature indicator. As the effective CN becomes imperfect at the edge, the edge bond will be shortened by <italic>C</italic><sub><italic>z</italic></sub> and strengthened by <inline-formula><mml:math id="M30"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>z</mml:mi></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula>; and the potential well of the neighbor atom will become closer and deepened in energy space proportional to bond energy. BOLS-HM considers the relative ratio of a quantity at under-coordinated atom and in bulk. Since the main contribution of <italic>V</italic><sub>cry</sub> to the ratio of integral at <italic>i</italic><sup>th</sup> atomic site is the atomic potential from the neighbor <italic>j</italic><sup>th</sup> atom <italic>V</italic><sub><italic>ij</italic></sub>, the &#x003B1;(<italic>z</italic><sub><italic>i</italic></sub>) and &#x003B2;<sub><italic>ij</italic></sub>(<italic>z</italic><sub><italic>i</italic></sub>) are both considered as <inline-formula><mml:math id="M31"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>z</mml:mi></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> proportional to the bond energy and potential well depression compared to those of bulk.</p>
<p>Determining the bond nature indicator <italic>m</italic> is accomplished by the consistency between predictions of BOLS correlation theory and experimental results on the various quantities as shown in Table <xref ref-type="table" rid="T2">2</xref>. For example, based on the Young&#x00027;s modulus [<xref ref-type="bibr" rid="B63">63</xref>, <xref ref-type="bibr" rid="B64">64</xref>], the melting temperature [<xref ref-type="bibr" rid="B65">65</xref>, <xref ref-type="bibr" rid="B66">66</xref>] of carbon nanotube and the energy shift of C1s level of grapheme [<xref ref-type="bibr" rid="B67">67</xref>], we obtained the bond nature parameter <italic>m</italic> &#x0003D; 2.56 of carbon. Figure <xref ref-type="fig" rid="F3">3</xref> compares the relation between hopping integrals and the C-C bond length derived by BOLS-HM and obtained by TB fitting from DFT results [<xref ref-type="bibr" rid="B33">33</xref>]. It should be noted that DFT treats low dimensional systems with vacuum slabs; while BOLS-HM develops the relations from the consistency between BOLS correlation theory and the experimental results.</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p><bold>Correlation between the &#x003B2;<sub><italic><bold>ij</bold></italic></sub> and the bond length <italic><bold>d</bold></italic> derived by BOLS&#x02013;TB compared with previous TB fitting from the DFT results [<xref ref-type="bibr" rid="B33">33</xref>]</bold>.</p></caption>
<graphic xlink:href="fphy-05-00013-g0003.tif"/>
</fig>
</sec>
<sec>
<title>Onsite repulsion effects</title>
<p>Since limited amount of electrons exist in nanomaterial compared with tremendous amount of electrons in bulk, the electron-electron repulsion at each atom, especially at edge sites, will induce considerable changes to electronic structure. As discussed, the Hubbard model [<xref ref-type="bibr" rid="B52">52</xref>] includes the onsite repulsion which stems from the Coulomb repulsion between electrons at each atomic site in Hamiltonian by introducing the Hubbard term <italic>Un</italic><sub><italic>i</italic></sub>&#x02191;<italic>n</italic><sub><italic>i</italic></sub>&#x02193;.</p>
<p>BOLS-HM considers the relation of <italic>d</italic><sub><italic>i</italic></sub> and <italic>U</italic><sub><italic>i</italic></sub> as:</p>
<disp-formula id="E15"><label>(14)</label><mml:math id="M32"><mml:mrow><mml:mrow><mml:mo>{</mml:mo> <mml:mrow><mml:mtable columnalign='left'><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mi>z</mml:mi><mml:mo stretchy='false'>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mo>/</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>B</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Bond&#x000A0;Contraction</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msub><mml:mi>U</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>&#x0221D;</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msup><mml:mrow><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Volume</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msub><mml:mi>U</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mo>/</mml:mo><mml:msub><mml:mi>U</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mo>=</mml:mo><mml:msup><mml:mrow><mml:mo stretchy='false'>[</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mo>/</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mo stretchy='false'>]</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Repulsion&#x000A0;Energy</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>where <italic>i</italic><sup>th</sup> atom locates at edge sites and <italic>j</italic><sup>th</sup> atom at the interior with coordination number of <italic>z</italic><sub><italic>j</italic></sub>. Hubbard <italic>U</italic> is the onsite repulsion energy which should contain the information of the relative ratio of the electron density, <inline-formula><mml:math id="M33"><mml:msup><mml:mrow><mml:mrow><mml:mo>[</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>z</mml:mi></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>z</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>/</mml:mo><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>z</mml:mi></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>z</mml:mi></mml:mrow><mml:mrow><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow><mml:mo>]</mml:mo></mml:mrow></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p>
</sec>
</sec>
</sec>
<sec id="s3">
<title>Application of BOLS-HM in 2D materials</title>
<sec>
<title>Electronic structure of graphene nanoribbons</title>
<sec>
<title>Challenges</title>
<p>The principle for the EG expansion with width is not clear, apart from the EG disparity between experiments and calculations. Either the carrier confinement [<xref ref-type="bibr" rid="B68">68</xref>&#x02013;<xref ref-type="bibr" rid="B70">70</xref>] or the edge energy pinning couldn&#x00027;t be changed by E<sub>G</sub> expansion and it also couldn&#x00027;t be observed [<xref ref-type="bibr" rid="B37">37</xref>] when calculations for the edge and for the interior were identical which were computed by hopping integrals employed in band structure. At the edge, the hopping integral is extremely greater comparing with the integral in the GNR interior [<xref ref-type="bibr" rid="B69">69</xref>]. It&#x00027;s obvious that the E<sub>G</sub> is determined <italic>intrinsically</italic> by the crystal potential and hence the Hamiltonian matrix, but the density and energy of carriers in GNR is of a great importance to the transport dynamics though from our proposition.</p>
</sec>
<sec>
<title>Hamiltonian of GNRs</title>
<p>As far as the &#x003C0; and &#x003C0;<sup>&#x0002A;</sup> orbitals of the C 2<italic>p</italic><sub><italic>z</italic></sub> electrons are concerned, the Hamiltonian matrix elements are</p>
<disp-formula id="E16"><label>(15)</label><mml:math id="M34"><mml:mrow><mml:mrow><mml:mo>{</mml:mo> <mml:mrow><mml:mtable columnalign='left'><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msub><mml:mo>&#x00394;</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>&#x003B5;</mml:mi><mml:mrow><mml:mn>2</mml:mn><mml:msub><mml:mi>p</mml:mi><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mo>&#x0003C;</mml:mo><mml:mn>2</mml:mn><mml:msub><mml:mi>p</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mi>c</mml:mi><mml:mi>r</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:mn>2</mml:mn><mml:msub><mml:mi>p</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo>&#x0003E;</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi>&#x003B5;</mml:mi><mml:mrow><mml:mn>2</mml:mn><mml:msub><mml:mi>p</mml:mi><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mtext>&#x02009;</mml:mtext><mml:mo>+</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mi>&#x003B1;</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mtext>&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Diagonal&#x000A0;Elements</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>x</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>&#x000B7;</mml:mo><mml:mo>&#x0003C;</mml:mo><mml:mn>2</mml:mn><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mi>c</mml:mi><mml:mi>r</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:mn>2</mml:mn><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>z</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>&#x0003E;</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>x</mml:mi></mml:mstyle><mml:mo stretchy='false'>)</mml:mo><mml:mo>&#x000B7;</mml:mo><mml:msub><mml:mi>&#x003B2;</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mtext>&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;</mml:mtext><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Off</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:mtext>diagonal&#x02009;Elements</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>where the onsite energy &#x00394;<sub><italic>i</italic></sub> is the sum of the exchange integral and the eigen-energy of the <italic>p</italic><sub><italic>z</italic></sub> electron, &#x003B5;<sub>2<sub><italic>p</italic><sub><italic>z</italic></sub></sub></sub>. <italic>V</italic> is the crystal potential and <italic>V</italic><sub><italic>i</italic></sub> is the <italic>i</italic><sup>th</sup> intra-atomic potential; &#x003B1; is the onsite exchange integral of negative value; &#x003B2;<sub><italic>ij</italic></sub> is the hopping integral and <inline-formula><mml:math id="M35"><mml:msub><mml:mrow><mml:mi>f</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>x</mml:mtext></mml:mstyle></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mrow><mml:mo>&#x02211;</mml:mo></mml:mrow><mml:mrow><mml:mi>j</mml:mi></mml:mrow></mml:munder></mml:mstyle><mml:mo class="qopname">exp</mml:mo><mml:mrow><mml:mo>[</mml:mo><mml:mrow><mml:mstyle class="text"><mml:mtext>i</mml:mtext></mml:mstyle><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle><mml:mo>&#x000B7;</mml:mo><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>X</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>X</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>. Considered structures of armchair-edge GNR (AGNR) and reconstructed zigzag-edge GNR (RecGNR) are shown in Figure <xref ref-type="fig" rid="F4">4</xref>. Since periodic direction is along <italic>x</italic> axis, wave vector <bold>k</bold> is parallel to <italic>x</italic>.</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p><bold>Illustration of structure of (A)</bold> AGNR and <bold>(B)</bold> RecGNR edges. The reconstructed edge consists of 7- and 5-atom rings. Periodic direction is along <italic>x</italic> axis and ribbon width in <italic>y</italic> axis. The hopping integrals are indicated as &#x003B2;, &#x003B2; <sub>1</sub>, and &#x003B2; <sub>2</sub>. <italic>N</italic> indicates the counting of ribbon width; the numbers also mark the atomic position. Reprinted with permission from Zhang et al. [<xref ref-type="bibr" rid="B71">71</xref>].</p></caption>
<graphic xlink:href="fphy-05-00013-g0004.tif"/>
</fig>
</sec>
<sec>
<title>BOLS-HM parameter for graphene</title>
<p>The following relations of effective coordination number (<italic>z</italic>), bond coefficient (<italic>C</italic><sub><italic>z</italic></sub>), single bond energy (<italic>E</italic>), potential (<italic>V</italic>), and hopping integral were be taken into consideration in the present BOLS-HM.</p>
<disp-formula id="E17"><label>(16)</label><mml:math id="M36"><mml:mrow><mml:mrow><mml:mo>{</mml:mo> <mml:mrow><mml:mtable columnalign='left'><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:msub><mml:mi>&#x003B2;</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>&#x0003C;</mml:mo><mml:msub><mml:mi>&#x003C6;</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mrow><mml:mo>(</mml:mo><mml:mi>r</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:mi>V</mml:mi><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>&#x0007C;</mml:mo><mml:msub><mml:mi>&#x003C6;</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mi>r</mml:mi><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mtext>&#x000A0;</mml:mtext></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mtext>&#x000A0;</mml:mtext></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mo>&#x0003E;</mml:mo><mml:mo>&#x0221D;</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Overlap&#x02009;integral</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mfrac><mml:mrow><mml:msub><mml:mi>&#x003B2;</mml:mi><mml:mn>1</mml:mn></mml:msub></mml:mrow><mml:mi>&#x003B2;</mml:mi></mml:mfrac></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mfrac><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:msup><mml:mrow><mml:mo stretchy='false'>(</mml:mo><mml:mn>2</mml:mn><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>2.56</mml:mn></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:msup><mml:mrow><mml:mo stretchy='false'>(</mml:mo><mml:mn>3</mml:mn><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>2.56</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mn>1.49</mml:mn></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Bare&#x000A0;edge&#x000A0;integral</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mfrac><mml:mrow><mml:msub><mml:mi>&#x003B2;</mml:mi><mml:mn>2</mml:mn></mml:msub></mml:mrow><mml:mi>&#x003B2;</mml:mi></mml:mfrac></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mfrac><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:msup><mml:mrow><mml:mo stretchy='false'>(</mml:mo><mml:mn>2.5</mml:mn><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>2.56</mml:mn></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:msup><mml:mrow><mml:mo stretchy='false'>(</mml:mo><mml:mn>3</mml:mn><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>2.56</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mn>1.17</mml:mn></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>Bare&#x000A0;edge-interior&#x000A0;integral</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mfrac><mml:mrow><mml:msub><mml:mi>&#x003B2;</mml:mi><mml:mn>3</mml:mn></mml:msub></mml:mrow><mml:mi>&#x003B2;</mml:mi></mml:mfrac></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:msup><mml:mrow><mml:msub><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>z</mml:mi><mml:mi>H</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>2.56</mml:mn></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:mn>1.11</mml:mn></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mtext>H-edge&#x000A0;integral</mml:mtext></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>Abbreviation of the bond contraction coefficient is <italic>C</italic><sub><italic>z</italic></sub>. C<sub><italic>zH</italic></sub> corresponds to the C-C bond length coefficient terminated with H. Subscripts <italic>B</italic> corresponds to bulk. From the measured melting point [<xref ref-type="bibr" rid="B65">65</xref>, <xref ref-type="bibr" rid="B66">66</xref>] of carbon nanotubes, elastic modulus [<xref ref-type="bibr" rid="B63">63</xref>, <xref ref-type="bibr" rid="B64">64</xref>], and the C1s electron binding energy shift [<xref ref-type="bibr" rid="B67">67</xref>], we have obtained <italic>m</italic> &#x0003D; 2.56.</p>
<p>In conducting the edge-modified TB calculations, the &#x003B2;<sub><italic>ij</italic></sub> are enlarged by <italic>C</italic>(<italic>z</italic>)<sup>&#x02212;2.56</sup> for under-coordinated atoms, as shown in Figure <xref ref-type="fig" rid="F4">4</xref>. The &#x003B2;<sub>1</sub> and &#x003B2;<sub>2</sub> (reduced from &#x003B2;<sub><italic>ij</italic></sub>, &#x003B2; for the bulk) at the edge are proportional to the bond energy. Therefore, &#x003B2;<sub>1</sub> &#x0003E; &#x003B2;<sub>2</sub> &#x0003E; &#x003B2; &#x0003D; 2.4 eV. The H-end edge bond contraction coefficient, <italic>C</italic><sub><italic>H</italic></sub>, is defined as the bond length ratio between GNR edge and interior, and taken as 96% according to DFT relaxation results [<xref ref-type="bibr" rid="B68">68</xref>]. Hence, the Hamiltonian as an example, of AGNR is</p>
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<p>With</p>
<disp-formula id="E19"><mml:math id="M38"><mml:mtable columnalign='left'><mml:mtr><mml:mtd><mml:msub><mml:mi>f</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mi>B</mml:mi></mml:munder><mml:mrow><mml:mi>exp</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mtext>i</mml:mtext><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>k</mml:mi></mml:mstyle><mml:mo>&#x000B7;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>d</mml:mi></mml:mstyle><mml:mrow><mml:mi>B</mml:mi><mml:mi>A</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mstyle><mml:mo>=</mml:mo><mml:mi>cos</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mi>k</mml:mi><mml:mo>/</mml:mo><mml:msqrt><mml:mn>3</mml:mn></mml:msqrt><mml:mo stretchy='false'>)</mml:mo><mml:mo>+</mml:mo><mml:mi>i</mml:mi><mml:mi>sin</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mi>k</mml:mi><mml:mo>/</mml:mo><mml:msqrt><mml:mn>3</mml:mn></mml:msqrt><mml:mo stretchy='false'>)</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:msub><mml:mi>f</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mi>C</mml:mi></mml:munder><mml:mrow><mml:mi>exp</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mtext>i</mml:mtext><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>k</mml:mi></mml:mstyle><mml:mo>&#x000B7;</mml:mo><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>d</mml:mi></mml:mstyle><mml:mrow><mml:mi>A</mml:mi><mml:mi>C</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mstyle><mml:mo>=</mml:mo><mml:mi>cos</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mi>k</mml:mi><mml:mo>/</mml:mo><mml:mn>2</mml:mn><mml:msqrt><mml:mn>3</mml:mn></mml:msqrt><mml:mo stretchy='false'>)</mml:mo><mml:mo>+</mml:mo><mml:mi>i</mml:mi><mml:mi>sin</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mi>k</mml:mi><mml:mo>/</mml:mo><mml:mn>2</mml:mn><mml:msqrt><mml:mn>3</mml:mn></mml:msqrt><mml:mo stretchy='false'>)</mml:mo></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
<p>The first Brillion zone is <inline-formula><mml:math id="M39"><mml:mi>k</mml:mi><mml:mo>&#x02208;</mml:mo><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mi>&#x003C0;</mml:mi><mml:mo>/</mml:mo><mml:msqrt><mml:mrow><mml:mn>3</mml:mn></mml:mrow></mml:msqrt></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mrow><mml:mo>[</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>1</mml:mn></mml:mrow><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>. The direction of <bold>k</bold> is along the <italic>x</italic> axis. <inline-formula><mml:math id="M40"><mml:msqrt><mml:mrow><mml:mn>3</mml:mn></mml:mrow></mml:msqrt><mml:mi>a</mml:mi></mml:math></inline-formula> is the lattice constant of the unit cell of AGNR.</p>
<p>Considering Hamiltonian matrix, state vector matrix <inline-formula><mml:math id="M41"><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>C</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo>|</mml:mo><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>c</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mi>v</mml:mi></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>,</mml:mo><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>c</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:msup><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>,</mml:mo><mml:mo>&#x02026;</mml:mo><mml:mo>&#x0003E;</mml:mo></mml:math></inline-formula> at a specific <bold>k</bold> point applies the equation:</p>
<disp-formula id="E20"><label>(17)</label><mml:math id="M42"><mml:mrow><mml:msubsup><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>C</mml:mi></mml:mstyle><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>k</mml:mi></mml:mstyle><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>T</mml:mi></mml:mstyle></mml:msubsup><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>H</mml:mi></mml:mstyle><mml:msub><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>C</mml:mi></mml:mstyle><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>k</mml:mi></mml:mstyle></mml:msub><mml:mo>=</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>&#x003A3;</mml:mi></mml:mstyle></mml:mrow></mml:math></disp-formula>
<p>where <bold>&#x003A3;</bold> is a diagonal matrix with diagonal elements of <inline-formula><mml:math id="M43"><mml:msub><mml:mrow><mml:mi>&#x003B5;</mml:mi></mml:mrow><mml:mrow><mml:mi>v</mml:mi></mml:mrow></mml:msub><mml:mstyle class="text"><mml:mtext>,</mml:mtext></mml:mstyle><mml:msub><mml:mrow><mml:mi>&#x003B5;</mml:mi></mml:mrow><mml:mrow><mml:msup><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:math></inline-formula> etc. <bold>C</bold><sub><bold>k</bold></sub> is an orthogonal matrix with <inline-formula><mml:math id="M44"><mml:mo>&#x0003C;</mml:mo><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>c</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mi>v</mml:mi></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>|</mml:mo><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>c</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:msup><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>&#x0003E;</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>0</mml:mn></mml:math></inline-formula>. Through diagonalizing the Hamiltonian Matrix, by using QR (orthogonal and upper triangular matrix decomposition) iteration [<xref ref-type="bibr" rid="B72">72</xref>], Arnoldi Iteration [<xref ref-type="bibr" rid="B73">73</xref>], or Jacobi method [<xref ref-type="bibr" rid="B74">74</xref>], the eigen-energies and eigen-vectors can be obtained at each <bold>k</bold> point. High symmetry k-points are usually calculated first such as &#x00393; point at the center of Brillouin zone and M point at center of an edge of simple cubic.</p>
</sec>
<sec>
<title>E<sub>G</sub> opening GNRs</title>
<p>In Figure <xref ref-type="fig" rid="F5">5</xref>, band structures of bare and H-end RecGNR-8 are compared clearly. Both BOLS-HM and DFT calculation results are plot. By the method of BOLS-HM and DFT, a very small E<sub>G</sub> (&#x0007E;0.1 eV) is generated near &#x00393; point. E<sub>G</sub> indeed is dominated by the quantum entrapment of electrons at edges. The bond which is dangling results in an additional state at the Fermi level. The electron entrapment could pin and polarize the non-bonding electron locally [<xref ref-type="bibr" rid="B19">19</xref>]. Dangling bonds generates localized energy state near E<sub><italic>F</italic></sub> (blue line), but does not determine E<sub>G</sub> [<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B75">75</xref>].</p>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p><bold>The energy dispersion of bare RecGNR-8 calculated by (A)</bold> TB; <bold>(B)</bold> BOLS-HM; <bold>(C)</bold> DFT; The energy dispersion of H-end RecGNR-8 calculated by <bold>(D)</bold> TB; <bold>(E)</bold> BOLS-HM; and <bold>(F)</bold> DFT. Reprinted with permission from Zhang et al. [<xref ref-type="bibr" rid="B71">71</xref>].</p></caption>
<graphic xlink:href="fphy-05-00013-g0005.tif"/>
</fig>
<p>Figure <xref ref-type="fig" rid="F6">6</xref> compares size-dependent E<sub>G</sub> <italic>(N</italic>) calculated by conventional TB and by BOLS-HM scheme. AGNR with or without hydrogenation were both considered by BOLS-HM. E<sub>G</sub> is always zero when <italic>N</italic> &#x0003D; 3<italic>p</italic>&#x0002B;2 (<italic>p</italic> is a natural number) calculated by TB. E<sub>G</sub> opens with or without hydrogenation calculated by BOLS-HM, accord with the E<sub>G</sub> observations of DFT calculation [<xref ref-type="bibr" rid="B68">68</xref>, <xref ref-type="bibr" rid="B76">76</xref>] and STM results [<xref ref-type="bibr" rid="B77">77</xref>]. Hydrogenation does not determine the E<sub>G</sub> opening, but the hopping integral enhancement does.</p>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p><bold>E<sub><bold>G</bold></sub> vs. ribbon width (N) of the in bare and H-end AGNRs calculated by TB and BOLS-HM</bold>. Reprinted with permission from Zhang et al. [<xref ref-type="bibr" rid="B71">71</xref>].</p></caption>
<graphic xlink:href="fphy-05-00013-g0006.tif"/>
</fig>
</sec>
</sec>
<sec>
<title>Spin and magnetism of GNR</title>
<sec>
<title>Challenges</title>
<p>There was a puzzle about the mechanism of the edge-discriminative generation of the (Dirac-Fermi Polarons) DFPs [<xref ref-type="bibr" rid="B78">78</xref>]. The DFPs have been observed as a sharp density of states at Fermi energy (E<sub><italic>F</italic></sub>) by scanning tunneling microscopy/spectroscopy [<xref ref-type="bibr" rid="B79">79</xref>, <xref ref-type="bibr" rid="B80">80</xref>]. However, it is not likely to form DFPs at a clean graphite surface, the interior of GNR, or the armchair edge. Below the surface of graphene, the charge density fluctuations attribute to charge donations of impurities [<xref ref-type="bibr" rid="B81">81</xref>]. It has been suggested that the interlayer interaction should generate the DFPs [<xref ref-type="bibr" rid="B82">82</xref>]. However, the mechanism only applies to graphene of two or more layers [<xref ref-type="bibr" rid="B83">83</xref>&#x02013;<xref ref-type="bibr" rid="B85">85</xref>]. Clarifying the principle of the DFPs generating [<xref ref-type="bibr" rid="B86">86</xref>] is a burning desire.</p>
</sec>
<sec>
<title>Spin-polarized BOLS-HM parameters of graphene</title>
<p>In the TB Hubbard model, the spin-polarized Hamiltonian can be expressed as:</p>
<disp-formula id="E21"><label>(18)</label><mml:math id="M45"><mml:mtable columnalign='left'><mml:mtr><mml:mtd><mml:msub><mml:mi>H</mml:mi><mml:mi>&#x003C3;</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:munder><mml:mrow><mml:msub><mml:mo>&#x00394;</mml:mo><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mstyle><mml:msubsup><mml:mi>c</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow><mml:mo>+</mml:mo></mml:msubsup><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mo>&#x0003C;</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>&#x0003E;</mml:mo><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:munder><mml:mrow><mml:msub><mml:mi>&#x003B2;</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msubsup><mml:mi>c</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow><mml:mo>+</mml:mo></mml:msubsup><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msubsup><mml:mi>f</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow><mml:mo>&#x02217;</mml:mo></mml:msubsup><mml:msubsup><mml:mi>c</mml:mi><mml:mrow><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow><mml:mo>+</mml:mo></mml:msubsup><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mstyle></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mo>+</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mi>i</mml:mi></mml:munder><mml:mrow><mml:msub><mml:mi>U</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mover accent='true'><mml:mi>n</mml:mi><mml:mo>&#x0005E;</mml:mo></mml:mover><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mover accent='true'><mml:mi>n</mml:mi><mml:mo>&#x0005E;</mml:mo></mml:mover><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mo>&#x02212;</mml:mo><mml:mi>&#x003C3;</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mstyle></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
<p>Where &#x003C3; is the spin with sign. <italic>f</italic><sub><italic>ij</italic></sub> is the periodic factor. Subscript D denotes dangling &#x003C3;-bond. The last term is the Hubbard electron repulsion.</p>
<p>We establish the Hamiltonian matrix for atomic vacancy, zigzag, armchair, reconstructed zigzag in the BOLS-HM calculations. Owing to the truth that orbitals have different symmetries in the <italic>z</italic>-direction [<xref ref-type="bibr" rid="B87">87</xref>], the hopping integral <italic>t</italic><sub><italic>D</italic></sub> between the dangling &#x003C3;&#x02013;electron orbital and the <italic>p</italic><sub><italic>z</italic></sub> orbital of the nearest neighbors is about &#x02212;0.5 eV [<xref ref-type="bibr" rid="B88">88</xref>]. Spin-polarized electronic structures are solved by self-consistent field scheme.</p>
</sec>
<sec>
<title>Local spin density of states</title>
<p>Considering spin-polarized Hamiltonian, spin-polarized electronic structures can be obtained by diagonalizing the Hamiltonian matrix using the mean-field method as described. Local spin density of states (LSDOS) of spin &#x003C3; at <italic>i</italic><sup>th</sup> atom, <italic>g</italic><sub><italic>i&#x003C3;</italic></sub>(<italic>E</italic>), can be calculated from the spin-polarized electronic structure.</p>
<p>LDOS at <italic>i</italic><sup>th</sup> atom [<italic>g</italic><sub><italic>i</italic></sub>(<italic>E</italic>)] is calculated according to the atomic contribution (<italic>c</italic><sub><italic>iv</italic><sub><italic>k</italic></sub></sub>) to the LCAO eigen-vector <bold>c</bold><sub><italic>v</italic><sub><italic>k</italic></sub></sub> and expressed as:</p>
<disp-formula id="E22"><label>(19)</label><mml:math id="M46"><mml:mrow><mml:msub><mml:mi>g</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mi>E</mml:mi><mml:mo stretchy='false'>)</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x02009;</mml:mtext><mml:mfrac><mml:mn>1</mml:mn><mml:mi>A</mml:mi></mml:mfrac><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>v</mml:mi><mml:mo>,</mml:mo><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>k</mml:mi></mml:mstyle></mml:mrow></mml:munder><mml:mrow><mml:msubsup><mml:mi>c</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>v</mml:mi><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>k</mml:mi></mml:mstyle></mml:mrow><mml:mn>2</mml:mn></mml:msubsup><mml:mi>exp</mml:mi><mml:mrow><mml:mo>[</mml:mo> <mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:mn>2</mml:mn></mml:mfrac><mml:msup><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mfrac><mml:mrow><mml:mi>E</mml:mi><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>&#x003B5;</mml:mi><mml:mrow><mml:mi>v</mml:mi><mml:mstyle mathvariant='bold' mathsize='normal'><mml:mi>k</mml:mi></mml:mstyle></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>&#x003C3;</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow><mml:mn>2</mml:mn></mml:msup></mml:mrow> <mml:mo>]</mml:mo></mml:mrow></mml:mrow></mml:mstyle></mml:mrow></mml:math></disp-formula>
<p>Figure <xref ref-type="fig" rid="F7">7</xref> illustrates the calculation results of LDOS of AGNR-20. Density distribution at each atomic position and at difference energy can be obtained. Arrows in left panel indicates the quantum trapping of bonding electrons and polarization of anti-bonding states at edge sites obtained by BOLS-HM.</p>
<fig id="F7" position="float">
<label>Figure 7</label>
<caption><p><bold>LDOS contour of AGNR-20 calculated by BOLS-HM (left)</bold> compared with conventional TB <bold>(right)</bold>. C1 and C2 are the edge sites.</p></caption>
<graphic xlink:href="fphy-05-00013-g0007.tif"/>
</fig>
<p>The BOLS-HM derived LDOS of a hydrogenated vacAGNR (H-vacAGNR) with ribbon width <italic>N</italic> &#x0003D; 20 is shown in Figure <xref ref-type="fig" rid="F8">8</xref>. A sharp resonant peak at vacancy site near E<sub>F</sub> can be observed, which is consistent with that identified experimentally from graphite surface vacancy [<xref ref-type="bibr" rid="B89">89</xref>].</p>
<fig id="F8" position="float">
<label>Figure 8</label>
<caption><p><bold>The structure of vacAGNR-20 (up)</bold> and the BOLS-HM derived LDOS of the defective AGNR <bold>(down)</bold>. Reprinted with permission from Zhang et al. [<xref ref-type="bibr" rid="B90">90</xref>].</p></caption>
<graphic xlink:href="fphy-05-00013-g0008.tif"/>
</fig>
</sec>
<sec>
<title>Magnetism of Dirac-Fermi polarons</title>
<p>As Figure <xref ref-type="fig" rid="F9">9</xref> shows, the local spin density of states (LSDOS) with and without hydrogenation are compared intuitively, as well as the spin electron density in real space. Zigzag edges and atomic defects demonstrates a spin-density as high as 0.7&#x0007E;1.0 electron/&#x000C5;<sup>3</sup> of dangling &#x003C3;-bond. Surprisingly, after hydrogenation, zigzag edge still has a low magnetism, due to the contribution of <italic>p</italic><sub><italic>z</italic></sub> electrons trapped at edges. Meanwhile, we found armchair edge exhibiting an extremely low spin-density.</p>
<fig id="F9" position="float">
<label>Figure 9</label>
<caption><p><bold>DFT-derived spin electron density and BOLS-HM derived difference LSDOS for (A)</bold> ZGNR and <bold>(B)</bold> H-ZGNR. Zigzag edge manifest a strong local magnetism caused by both <italic>D</italic><sub>z</sub> and trapped edge <italic>p</italic><sub>z</sub> electron. Hydrogenation annihilates <italic>D</italic><sub>z</sub> but leaves a weak magnetism. Reprinted with permission from Zhang et al. [<xref ref-type="bibr" rid="B90">90</xref>].</p></caption>
<graphic xlink:href="fphy-05-00013-g0009.tif"/>
</fig>
<p>The <italic>sp</italic><sup>2</sup> hybridization of GNR edges are shown in Figure <xref ref-type="fig" rid="F10">10</xref> to help to understanding the results of magnetism of DFPs. At armchair edge in Figure <xref ref-type="fig" rid="F10">10A</xref>, each edge atom loses one of its neighbors and leaves a dangling electron. Due to the short distance (d) between two atoms along the edge, triple bonds are formed between two atoms and the sp2 hybrid may also change. At zigzag edge in Figure <xref ref-type="fig" rid="F10">10B</xref>, atoms along the edge have a longer distance (<inline-formula><mml:math id="M47"><mml:msqrt><mml:mrow><mml:mn>3</mml:mn></mml:mrow></mml:msqrt><mml:mi>d</mml:mi></mml:math></inline-formula>) and leave the dangling &#x003C3; bond which may provide edge Dirac states.</p>
<fig id="F10" position="float">
<label>Figure 10</label>
<caption><p><bold>Hybrid <italic><bold>sp</bold></italic><sup><bold>2</bold></sup> orbitals of carbon atom are plotted at edges of (A)</bold> AGNR and <bold>(B)</bold> ZGNR.</p></caption>
<graphic xlink:href="fphy-05-00013-g0010.tif"/>
</fig>
</sec>
</sec>
<sec>
<title>E<sub>G</sub> expansion of black phosphorene</title>
<sec>
<title>Challenges</title>
<p>Few-layer phosphorene [<xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B10">10</xref>] shows high carrier motilities, up to 1,000 cm<sup>2</sup>V<sup>&#x02212;1</sup>s<sup>&#x02212;1</sup>, and a high current on/off ratio of up to 10<sup>5</sup> at room temperature. These values make this material a promising candidate for field-effect transistors [<xref ref-type="bibr" rid="B91">91</xref>&#x02013;<xref ref-type="bibr" rid="B93">93</xref>]. Modulating the band gap of phosphorene nanoribbon (PNR) [<xref ref-type="bibr" rid="B94">94</xref>, <xref ref-type="bibr" rid="B95">95</xref>] is crucial for the semiconducting applications. Because of its anisotropy, the electronic properties are affected considerably by the orientation of the PNRs [<xref ref-type="bibr" rid="B96">96</xref>, <xref ref-type="bibr" rid="B97">97</xref>], leading to promising applications. However, the physical origin behind the E<sub>G</sub> modulation is still unclear.</p>
</sec>
<sec>
<title>BOLS-HM scheme</title>
<p>According to BOLS-HM, the perturbation to the crystal potential can be expressed as follows <italic>V</italic><sub><italic>cry</italic></sub> (<italic>N</italic>) &#x0003D; <italic>V</italic><sub><italic>cry</italic></sub> (&#x0221E;) (1&#x0002B;&#x00394;<sub><italic>N</italic></sub>). <italic>V</italic><sub>cry</sub> (<italic>N</italic>) and <italic>V</italic><sub>cry</sub> (&#x0221E;) denote the crystal potential of nanomaterial size (N) and the bulk, respectively. &#x00394;<sub><italic>N</italic></sub> is a size-dependent perturbation to the crystal potential. The relationship can also be described as Froyen and Harrison [<xref ref-type="bibr" rid="B31">31</xref>]:</p>
<disp-formula id="E23"><label>(20)</label><mml:math id="M48"><mml:mtable columnalign='left'><mml:mtr><mml:mtd><mml:mo>&#x00394;</mml:mo><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mi>c</mml:mi><mml:mi>r</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mi>N</mml:mi><mml:mo stretchy='false'>)</mml:mo><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mi>c</mml:mi><mml:mi>r</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mi>&#x0221E;</mml:mi><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>V</mml:mi><mml:mrow><mml:mi>c</mml:mi><mml:mi>r</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mi>&#x0221E;</mml:mi><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>g</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mi>N</mml:mi><mml:mo stretchy='false'>)</mml:mo><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi>g</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mi>&#x0221E;</mml:mi><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>g</mml:mi></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mi>&#x0221E;</mml:mi><mml:mo stretchy='false'>)</mml:mo></mml:mrow></mml:mfrac></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mtext>&#x02009;&#x02009;&#x02009;&#x02009;&#x02009;</mml:mtext><mml:mo>=</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>&#x02264;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:munder><mml:mrow><mml:msub><mml:mi>&#x003B3;</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mstyle><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mfrac><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:mfrac><mml:mo>&#x02212;</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle='true'><mml:munder><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>&#x02264;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:munder><mml:mrow><mml:msub><mml:mi>&#x003B3;</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mstyle><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msubsup><mml:mi>C</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:msubsup><mml:mo>&#x02212;</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:msub><mml:mi>&#x003B3;</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>V</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mi>V</mml:mi></mml:mfrac><mml:mo>=</mml:mo><mml:mi>&#x003C4;</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msup><mml:mi>N</mml:mi><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msup></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
<p>&#x003B3;<sub>i</sub> is the surface-to-volume ratio, and &#x003C4; is the dimensionality with &#x003C4; &#x0003D; 1, 2, 3 for a nanoparticle, nanoribbon, or nanofilm, respectively. The bond index <italic>m</italic> is intrinsic to a specific material. The expressions indicate the size-dependent V<sub>cry</sub> and E<sub>G</sub> are a function of shape and surface-to-volume ratio of a nanomaterial.</p>
<p>Figure <xref ref-type="fig" rid="F11">11</xref> compares the DFT-derived E<sub>G</sub> vs. the ribbon width(N) of zigzag and armchair PNRs with theoretical prediction of BOLS-HM [<xref ref-type="bibr" rid="B98">98</xref>]. The m of the PNRs in Equation (20) was optimized to be 4.60 based on the measured data. Using the optimized <italic>m</italic>-values, we calculated, plotted, and compared the theoretical curves. The necessary values of the reference bandgap energy E<sub>bZ</sub> &#x0003D; 0.82 eV and E<sub>bA</sub> &#x0003D; 0.43 eV were obtained. They are very close to the bulk value of two typical edge materials. A further refinement of the derived m, E<sub>bZ</sub>, and E<sub>bA</sub> values was achieved by carefully matching the DFT calculations to the whole nanoribbon length ranges.</p>
<fig id="F11" position="float">
<label>Figure 11</label>
<caption><p><bold>BOLS reproduction of the DFT calculated size-dependency of (A)</bold> zigzag PNRs and <bold>(B)</bold> armchair PNRs. Reprint with permission from Liu et al. [<xref ref-type="bibr" rid="B98">98</xref>].</p></caption>
<graphic xlink:href="fphy-05-00013-g0011.tif"/>
</fig>
</sec>
</sec>
<sec>
<title>Electronic properties of antimonene</title>
<p>Encouragingly, the 2D material has been found in group V elements. Antimony(Sb), non-hygroscopic, gray metal with a layered structure similar to that of BP [<xref ref-type="bibr" rid="B11">11</xref>]. Antimonene is stable at high temperature as high as 1,000 K [<xref ref-type="bibr" rid="B12">12</xref>] and becomes semiconducting when it is a one atomic layer [<xref ref-type="bibr" rid="B99">99</xref>]. Because there are a large number of dangling bonds and broken bonds in the edge of antimonene nanoribbon (SbNR) [<xref ref-type="bibr" rid="B100">100</xref>], the bond parameters of the surface atoms are different from the internal atoms. Like other 2D material, the E<sub>G</sub> modulation is crucial for its potential applications while the physical origin is not conclusive yet.</p>
<p>Though antimony belongs to rhombohedral system, hexagonal coordinate system is convenient to describe its structure. We identify the SbNR structures by the number of N along the ribbon orientations. Vacuum slabs of 10 &#x000C5; were inserted in the width direction and the <italic>z</italic> axis. DFT calculation was performed by CASTEP using PBE functional. Figure <xref ref-type="fig" rid="F12">12</xref> compares the DFT-derived E<sub>G</sub> vs. the ribbon width(N) of zigzag and armchair PNRs with theoretical prediction of BOLS-HM. The reproduction of these quantities confirms the importance of the size of nanoribbons, which supports the proposals that the origin of these novel properties is mainly due to the change of the bond length and strength in different sizes of SbNRs.</p>
<fig id="F12" position="float">
<label>Figure 12</label>
<caption><p><bold>DFT-derived band gap dependence of width of the zigzag SbNRs</bold>. The red lines correspond to the BOLS theoretical prediction.</p></caption>
<graphic xlink:href="fphy-05-00013-g0012.tif"/>
</fig>
</sec>
</sec>
<sec id="s4">
<title>Summary</title>
<p>In this work, a quantum theory was proposed to calculate the under-coordinated effects on the electronic structure of materials by incorporating BOLS correlation theory to mean-field Hubbard model. The whole process of BOLS-HM dealing with the chemical bonds can be summarized as:
<list list-type="order">
<list-item><p>Input the effective coordination number z, the bond length at the under-coordinated sites to calculate the increase of bond energy, and the mortification of the inter-atomic matrix elements according to BOLS correlation.</p></list-item>
<list-item><p>Construct the Bloch sums &#x003C8;<sub><italic>v</italic>,<bold>k</bold></sub>(<bold>r</bold>) of wave functions for low-dimentional nanomaterial.</p></list-item>
<list-item><p>Construct the Hamiltonian matrix with strong correlation Hubbard model of the nanosystem.</p></list-item>
<list-item><p>Solve the spin-polarized electronic structure self-consistently to get eigenenergy and eigenvectors <inline-formula><mml:math id="M49"><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>C</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo>|</mml:mo><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>c</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mi>v</mml:mi></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>,</mml:mo><mml:msub><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>c</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:msup><mml:mrow><mml:mi>v</mml:mi></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mstyle mathvariant="bold"><mml:mtext>k</mml:mtext></mml:mstyle></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>,</mml:mo><mml:mo>&#x02026;</mml:mo><mml:mo>&#x0003E;</mml:mo></mml:math></inline-formula> for each <bold>k</bold> point.</p></list-item>
<list-item><p>Based on the eigenenergy and eigenvector results, properties such as Mulliken charge, Mayer bond order, local density of states can thus be obtained.</p></list-item>
</list></p>
<p>By virtue of BOLS-HM, we clarified that (i) bond contractions and potential well depression occur at the edge of graphene, phosphorene, and antimonene nanoribbons; (ii) the physical origin of the band gap opening of graphene, phosphorene, and antimonene nanoribbons lays in the enhancement of edge potentials and hopping integrals due to the shorter and stronger bonds between undercoordinated atoms; (iii) the band gap of 2D material nanoribbons expand as the width decreases which modulates the conductive behaviors; and (iv) non-bond electrons at the edges and atomic vacancies of 2D material accompanied with the broken bond contribute to the DFP with a local magnetic moment. Although, this work shows the BOLS-HM applications on three kinds of 2D materials, the potential applications are not limited to those materials but applied on other species such as Mo/WS<sub>2</sub>.</p>
</sec>
<sec id="s5">
<title>Author contributions</title>
<p>XZ coordinates the project. XZ and TW proposed the theoretical model. TW, WC, and DP wrote the manuscript. SW did the DFT calculations.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<ack>
<p>Financial supports from National Natural Science Foundation (No. 51605306) of China, Guangdong Innovation Youth Fund (No. 2015KQNCX144), and Natural Science Foundation of Guangdong (No. 2016A030310060), and of SZU (No. 827000131), Shenzhen foundation fund (No. JCYJ20160427105015701) are gratefully acknowledged.</p>
</ack>
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