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<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Pharmacol.</journal-id>
<journal-title-group>
<journal-title>Frontiers in Pharmacology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Pharmacol.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1663-9812</issn>
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<publisher-name>Frontiers Media S.A.</publisher-name>
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<article-meta>
<article-id pub-id-type="publisher-id">1760820</article-id>
<article-id pub-id-type="doi">10.3389/fphar.2026.1760820</article-id>
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<article-categories>
<subj-group subj-group-type="heading">
<subject>Review</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Epidemiological relevant effect biomarkers for thyroid hormone system related adverse outcome pathways: a literature review</article-title>
<alt-title alt-title-type="left-running-head">Wiels&#xf8;e et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fphar.2026.1760820">10.3389/fphar.2026.1760820</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Wiels&#xf8;e</surname>
<given-names>Maria</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/3262008"/>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Writing &#x2013; original draft" vocab-term-identifier="https://credit.niso.org/contributor-roles/writing-original-draft/">Writing - original draft</role>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Writing &#x2013; review &#x26; editing" vocab-term-identifier="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/">Writing - review and editing</role>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Long</surname>
<given-names>Manhai</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2002640"/>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Writing &#x2013; review &#x26; editing" vocab-term-identifier="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/">Writing - review and editing</role>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Stratidakis</surname>
<given-names>Antonios K.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1812668"/>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Writing &#x2013; review &#x26; editing" vocab-term-identifier="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/">Writing - review and editing</role>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Renieri</surname>
<given-names>Elisavet</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/3305154"/>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Writing &#x2013; review &#x26; editing" vocab-term-identifier="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/">Writing - review and editing</role>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sarigiannis</surname>
<given-names>Dimosthenis A.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2552235"/>
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</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Bonefeld-J&#xf8;rgensen</surname>
<given-names>Eva Cecilie</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/3395162"/>
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</contrib-group>
<aff id="aff1">
<label>1</label>
<institution>Centre for Arctic Health and Molecular Epidemiology, Department of Public Health, Aarhus University</institution>, <city>Aarhus</city>, <country country="DK">Denmark</country>
</aff>
<aff id="aff2">
<label>2</label>
<institution>Science, Technology and Society Department, Environmental Health Engineering, University School for Advanced Study (IUSS)</institution>, <city>Pavia</city>, <country country="IT">Italy</country>
</aff>
<aff id="aff3">
<label>3</label>
<institution>Environmental Engineering Laboratory, Department of Chemical Engineering, Aristotle University of Thessaloniki</institution>, <city>Thessaloniki</city>, <country country="GR">Greece</country>
</aff>
<aff id="aff4">
<label>4</label>
<institution>HERACLES Research Center on the Exposome and Health, Center for Interdisciplinary Research and Innovation, Aristotle University of Thessaloniki</institution>, <city>Thessaloniki</city>, <country country="GR">Greece</country>
</aff>
<aff id="aff5">
<label>5</label>
<institution>National Hellenic Research Foundation</institution>, <city>Athens</city>, <country country="GR">Greece</country>
</aff>
<aff id="aff6">
<label>6</label>
<institution>Greenland Centre for Health Research, University of Greenland</institution>, <city>Nuuk</city>, <country country="GL">Greenland</country>
</aff>
<author-notes>
<corresp id="c001">
<label>&#x2a;</label>Correspondence: Eva Cecilie Bonefeld-J&#xf8;rgensen, <email xlink:href="mailto:ebj@ph.au.dk">ebj@ph.au.dk</email>
</corresp>
</author-notes>
<pub-date publication-format="electronic" date-type="pub" iso-8601-date="2026-03-04">
<day>04</day>
<month>03</month>
<year>2026</year>
</pub-date>
<pub-date publication-format="electronic" date-type="collection">
<year>2026</year>
</pub-date>
<volume>17</volume>
<elocation-id>1760820</elocation-id>
<history>
<date date-type="received">
<day>04</day>
<month>12</month>
<year>2025</year>
</date>
<date date-type="rev-recd">
<day>21</day>
<month>01</month>
<year>2026</year>
</date>
<date date-type="accepted">
<day>10</day>
<month>02</month>
<year>2026</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2026 Wiels&#xf8;e, Long, Stratidakis, Renieri, Sarigiannis and Bonefeld-J&#xf8;rgensen.</copyright-statement>
<copyright-year>2026</copyright-year>
<copyright-holder>Wiels&#xf8;e, Long, Stratidakis, Renieri, Sarigiannis and Bonefeld-J&#xf8;rgensen</copyright-holder>
<license>
<ali:license_ref start_date="2026-03-04">https://creativecommons.org/licenses/by/4.0/</ali:license_ref>
<license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License (CC BY)</ext-link>. The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p>
</license>
</permissions>
<abstract>
<sec>
<title>Background</title>
<p>Many factors, such as lifestyle, medication, and environmental exposures, are reported to cause thyroid hormone system disruption (THSD) in humans, however studies linking THSD to health effects are sparse. Adverse Outcome Pathways (AOPs) provide mechanistic links from molecular events to adverse outcomes, with effect biomarkers serving as a tool to empirically anchor key events and health effects and to assess biological relevance.</p>
</sec>
<sec>
<title>Aim</title>
<p>This review aims to identify and evaluate effect biomarkers for thyroid hormone system-related AOPs for further validation in experimental and epidemiological studies.</p>
</sec>
<sec>
<title>Methods</title>
<p>Using AOP-wiki, we extracted and analysed thyroid-related AOPs, focusing on the eleven AOPs with mammalian evidence. We did systematic literature search to identify potential effect biomarkers for future epidemiological studies.</p>
</sec>
<sec>
<title>Results</title>
<p>In an AOP network analysis of the eleven thyroid-related AOPs, we identified four AOP clusters, including hippocampal alterations, impaired learning and memory, thyroid follicular cell adenomas/carcinomas, and kidney toxicity. For the clusters on hippocampal alterations and impaired learning and memory, brain-derived neurotrophic factor emerged as a promising effect biomarker. For the cluster on thyroid follicular cell adenomas/carcinomas, no promising effect biomarkers with high specificity were identified, but interleukin-34, oxidative stress, and expression of several genes were found to be related to the adverse outcome. For kidney toxicity, a panel of effect biomarkers were identified, such as clusterin, cystatin-C, kidney injury molecule-1, N-acetyl-beta-d-glucosaminidase, neutrophil gelatinase-associated lipocalin, and osteopontin.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>This review operationalizes the AOP framework to support the use of mechanistically anchored effect biomarkers in human studies on THSD. By aligning key biological events with measurable endpoints, human matrices, and feasibility considerations, it provides a scientifically grounded path from mechanistic understanding to population research application. This enables more targeted biomonitoring, strengthens interpretation of epidemiological findings, and informs research and regulatory priorities for future validation efforts.</p>
</sec>
</abstract>
<kwd-group>
<kwd>adverse outcome pathway</kwd>
<kwd>human health</kwd>
<kwd>kidney toxicity</kwd>
<kwd>neurological outcome</kwd>
<kwd>thyroid follicular cancer</kwd>
<kwd>thyroid hormone</kwd>
</kwd-group>
<funding-group>
<award-group id="gs1">
<funding-source id="sp1">
<institution-wrap>
<institution>HORIZON EUROPE Framework Programme</institution>
<institution-id institution-id-type="doi" vocab="open-funder-registry" vocab-identifier="10.13039/open_funder_registry">10.13039/100018693</institution-id>
</institution-wrap>
</funding-source>
</award-group>
<funding-statement>The author(s) declared that financial support was received for this work and/or its publication. This work was carried out in the framework of the European Partnership for the Assessment of Risks from Chemicals (PARC) and has received funding from the European Union&#x2019;s Horizon Europe research and innovation programme under Grant Agreement No 101057014. Views and opinions expressed are, however, those of the authors only and do not necessarily reflect those of the European Union or the Health and Digital Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.</funding-statement>
</funding-group>
<counts>
<fig-count count="2"/>
<table-count count="5"/>
<equation-count count="0"/>
<ref-count count="119"/>
<page-count count="19"/>
</counts>
<custom-meta-group>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Predictive Toxicology</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<label>1</label>
<title>Introduction</title>
<p>Thyroid hormones are crucial for normal development and necessary for the proper functioning of physiological systems. Several factors can cause thyroid hormone system disruption (THSD) and many studies have investigated the effects of different exposures on thyroid hormone levels in humans (<xref ref-type="bibr" rid="B3">Babi&#x107; et al., 2021</xref>). In 2021, Babi&#x107; Leko found more than 25 studies reporting effects of smoking on thyroid-stimulating hormone (TSH), thyroid hormone and thyroglobulin levels, as well as more than 100 studies reporting effects of environmental pollutants, such as heavy metals, persistent organic pollutants, and plasticizers (<xref ref-type="bibr" rid="B3">Babi&#x107; et al., 2021</xref>). Furthermore, several drugs or drug classes, such as amiodarone, glucocorticoids, and antiepileptic agents, can have unintended effects and cause THSD at multiple levels (<xref ref-type="bibr" rid="B13">Burch, 2019</xref>). Fewer studies have documented adverse outcomes of the THSD in humans, which may be due to difficulties measuring/assessing the downstream health effects in epidemiological studies.</p>
<p>The Adverse Outcome Pathway (AOP) framework offers a structured approach to understand the progression from a molecular initiating event (MIE), through a number of linked key events (KEs) to an adverse outcome (AO) (<xref ref-type="bibr" rid="B2">Ankley and Edwards, 2018</xref>). In the context of THSD, multiple AOPs have been/are developed across various species, generating a comprehensive cross-species AOP network (<xref ref-type="bibr" rid="B37">Haigis et al., 2023</xref>). This network serves as an evidence-based foundation for extrapolating data on THSD across species.</p>
<p>The increasing recognition of AOPs linking molecular-level perturbations to health (AOs) has advanced the identification of effect biomarkers (EBMs) (<xref ref-type="bibr" rid="B37">Haigis et al., 2023</xref>). EBMs, defined by the World Health Organization as measurable biochemical, physiological, behavioural, or other alterations associated with potential health impairments, play a pivotal role in human biomonitoring (HBM) and risk assessment frameworks (<xref ref-type="bibr" rid="B89">Rodr&#xed;guez-Carrillo et al., 2022</xref>; <xref ref-type="bibr" rid="B72">Mustieles et al., 2020</xref>). These EBMs can offer insights into early biological effects, linking exposure and disease, as they cover a spectrum from initial biological changes, such as enzyme induction responses, to modifications in structure and function like phosphorylation and glycosylation which can alter protein stability and activity (<xref ref-type="bibr" rid="B56">Ladeira and Viegas, 2016</xref>). Additionally, EBMs can refine the risk assessment of specific chemical families and exposure to chemical mixtures, by establishing dose-response relationships, exploring mechanisms, and enhancing the biological plausibility of epidemiological associations.</p>
<p>The H2020 European Human Biomonitoring Initiative (HBM4EU) project started a systematic identification, validation, and implementation of EBMs in epidemiological studies to enhance the understanding of exposure-effect relationships. Leveraging the AOP framework, HBM4EU demonstrated that EBMs are not only integral to assessment of health risks but also in bridging gaps between mechanistic toxicology and epidemiological research (<xref ref-type="bibr" rid="B28">Fern&#xe1;ndez et al., 2022</xref>; <xref ref-type="bibr" rid="B115">Zare et al., 2021</xref>; <xref ref-type="bibr" rid="B90">Rodr&#xed;guez-Carrillo et al., 2023a</xref>). In the European Union&#x2019;s Horizon Europe project Partnership for the Assessment of Risks from Chemicals (PARC), the effect marker group under Task 5.3.2 has continued this work on identifying and developing EBMs based on AOPs.</p>
<p>In the present work, we focus on thyroid hormone-related AOPs currently listed in the AOP-Wiki. Other thyroid-related health effects not yet listed in AOP-wiki are outside the scope, such as cardiovascular disease, cardiac arrhythmias, osteoporosis, and lipid metabolism (<xref ref-type="bibr" rid="B53">Kortenkamp et al., 2020</xref>; <xref ref-type="bibr" rid="B82">Piantanida et al., 2020</xref>). This paper reflects a collaborative effort between researchers working on endocrine disruption and neurotoxicity, highlighting the shared mechanistic pathways and KEs.</p>
<p>To support the translation of mechanistic knowledge into population-based research, this review integrates the AOP framework with current evidence on EBMs relevant to THSD. By aligning KEs and AOs with measurable biomarkers and evaluating their feasibility in human studies, we provide a structured basis for selecting mechanistically informed endpoints. This synthesis highlights biomarkers that may already be suitable for use in epidemiological settings and identifies where additional validation would strengthen their application. Overall, this work aims to facilitate the effective incorporation of AOP-anchored EBMs into study design and public-health research on thyroid-related health effects.</p>
</sec>
<sec sec-type="methods" id="s2">
<label>2</label>
<title>Methods</title>
<sec id="s2-1">
<label>2.1</label>
<title>Identification of thyroid-related AOPs</title>
<p>We queried the AOP-wiki (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/">https://aopwiki.org/</ext-link>) in April 2023, to identify AOPs relevant to THSD following the general extraction logic described by Haigis et al. (<xref ref-type="bibr" rid="B37">Haigis et al., 2023</xref>).</p>
<p>All AOPs involving thyroid hormone synthesis, metabolism, transport, signaling, or thyroid hormone&#x2013;dependent biological processes were screened. AOPs were retained if their taxonomic applicability included mammals (human and/or rodents) given the objective of identifying effect biomarkers (EBMs) relevant for human epidemiology. For each AOP, we extracted the molecular initiating events (MIEs), key events (KEs), KE relationships (KERs), and adverse outcomes (AOs).</p>
<p>All identified thyroid-related AOPs and their species applicability are provided in <xref ref-type="sec" rid="s11">Supplementary Table S1</xref>, and detailed MIE, KE, and AO information for mammalian-relevant AOPs is provided in <xref ref-type="sec" rid="s11">Supplementary Table S2</xref>. These AOPs served as the basis for the network presented in <xref ref-type="fig" rid="F1">Figure 1</xref>. Non-mammalian AOPs (e.g., amphibian metamorphosis, swim bladder inflation) were recorded but excluded from biomarker evaluation due to limited direct human relevance.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Network of thyroid system related AOPs with mammalian evidence including AOPs 8, 42, 54, 110, 119, 128, 134, 152, 162, 300. Early events (often related to the thyroid system) are displayed by yellow boxes; late events (often more specific for the adverse outcome) are displayed by green boxes, and adverse outcomes are displayed by blue boxes. The numbers in purple indicate the AOP IDs of the AOPs where the key event relationships (KERs) are described. The network can be clustered into four based on the KERs, late events and AOs (grey boxes).</p>
</caption>
<graphic xlink:href="fphar-17-1760820-g001.tif">
<alt-text content-type="machine-generated">Flowchart diagram illustrating adverse outcome pathways starting from molecular initiating events that disrupt thyroid hormone synthesis, leading to downstream key events and adverse outcomes. Four clusters are highlighted on the right: hippocampal alterations and cognitive/ cochlear loss, decreased brain-derived neurotrophic factor and impaired memory, increased thyroid follicular cell proliferation and cancer, and kidney toxicity events. Boxes denote key events, arrows trace progression, and colored cluster sections group related outcomes. All references and pathway identifiers are included.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s2-2">
<label>2.2</label>
<title>AOP network development and clustering</title>
<p>Mammalian-relevant AOPs were organized into a network to visualize overlapping pathway events and biological connectivity (<xref ref-type="fig" rid="F1">Figure 1</xref>). Manual clustering was performed based on shared late KEs and AOs, consistent with Haigis et al. (<xref ref-type="bibr" rid="B37">Haigis et al., 2023</xref>). This approach allowed grouping of AOPs with common downstream pathways to facilitate the subsequent identification of EBMs aligned to specific neurodevelopmental, endocrine, and renal outcomes. The resulting clustered network (<xref ref-type="fig" rid="F1">Figure 1</xref>) informed the selection of late KEs and AOs for targeted biomarker identification.</p>
</sec>
<sec id="s2-3">
<label>2.3</label>
<title>Extraction of measurement approaches from AOP-Wiki</title>
<p>For each MIE and KE, all measurement methods described in AOP-Wiki were extracted, including molecular, cellular, tissue-level, and functional readouts. Each method was evaluated for its suitability for human epidemiological studies, considering:<list list-type="bullet">
<list-item>
<p>biological matrix availability (blood, urine, saliva, cerebrospinal fluid, tissue)</p>
</list-item>
<list-item>
<p>feasibility and scalability in population-based research</p>
</list-item>
<list-item>
<p>degree of invasiveness</p>
</list-item>
<list-item>
<p>existing human evidence</p>
</list-item>
</list>
</p>
<p>Measures requiring invasive sampling (e.g., brain tissue histology) were noted as mechanistically informative but not feasible for routine epidemiological use.</p>
</sec>
<sec id="s2-4">
<label>2.4</label>
<title>Literature search for candidate effect biomarkers</title>
<p>Where AOP-Wiki did not identify feasible human measurement options, we performed targeted PubMed searches. Search terms combined biomarker-related keywords with KE-specific biological terms and applied filters for human or translational evidence, English language, and publication years 2018&#x2013;2023.</p>
<p>The search workflow is illustrated in <xref ref-type="fig" rid="F2">Figure 2</xref>, and full search strings are provided in <xref ref-type="sec" rid="s11">Supplementary Table S3</xref>. Titles and abstracts were screened to identify studies reporting EBMs aligned to the late KEs and AOs.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Illustration of the search strategy in PubMed for MIE/KE without relevant measurement methods in AOP-wiki. The specific search strings are given in <xref ref-type="sec" rid="s11">Supplementary Table S3</xref>.</p>
</caption>
<graphic xlink:href="fphar-17-1760820-g002.tif">
<alt-text content-type="machine-generated">Flowchart outlining a literature search strategy integrating generic effect marker terms, specific key event search terms, and filters for humans, date, and language, followed by four categories: hippocampal alterations, reduced BDNF or neuronal function, thyroid follicular cell changes, and kidney function, with relevant example search terms for each except kidney function.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s2-5">
<label>2.5</label>
<title>Evaluation of biomarker applicability for human studies</title>
<p>Candidate EBMs were then evaluated based on their relevance and potential for use in human studies. Specifically, we considered: a) their mechanistic alignment with the corresponding AOP KEs and AOs, b) availability of measurable endpoints in human biological matrices, and c) feasibility for implementation in epidemiological settings, including scalability in population-based research. When human data was already available, we reviewed this evidence to assess applicability and maturity. Biomarkers supported mainly by experimental studies were noted as promising candidates that will require additional validation before widespread use in human populations. Markers that rely on highly invasive sampling, such as cerebrospinal fluid or post-mortem brain tissue, were not considered feasible for routine human biomonitoring and are presented separately in <xref ref-type="sec" rid="s11">Supplementary Table S4</xref>, as they remain valuable from a mechanistic research perspective.</p>
</sec>
<sec id="s2-6">
<label>2.6</label>
<title>Reporting and synthesis</title>
<p>The results are organized according to the four mechanistic clusters identified in the AOP network (<xref ref-type="fig" rid="F1">Figure 1</xref>). For each cluster, we describe the relevant biological context, the associated KEs and AOs, and the EBMs identified through our screening process. Where applicable, we highlight EBMs that are already measurable in human biological matrices and have been used in epidemiological or clinical studies, as well as those that appear promising but currently lack sufficient validation in human populations. We also note instances where no suitable biomarker could be identified, reflecting areas where further development and translational research are needed. Summary tables (<xref ref-type="table" rid="T1">Tables 1</xref>&#x2013;<xref ref-type="table" rid="T4">4</xref>) present an overview of biomarker applicability across clusters, while detailed extraction sheets are provided in <xref ref-type="sec" rid="s11">Supplementary Tables S1&#x2013;S4</xref>.</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Possible effect biomarkers for hippocampal alterations (gene expression, anatomy, and physiology) (Cluster 1 in <xref ref-type="fig" rid="F1">Figure 1</xref>).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Effect marker</th>
<th align="left">Matrix</th>
<th align="left">Measurement methods</th>
<th align="left">Comments/Recommended for human epidemiological studies (why, why not)</th>
<th align="left">References</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Hippocampal grading using SNIPE</td>
<td align="left">Brain in intact human body</td>
<td align="left">MRI, memory and cognition assess (WMS, MMSE or CDR)</td>
<td align="left">Promising EBM, however, for epidemiological studies the EBM may not be very useful, as the MRI measurement is very inconvenient and time-consuming</td>
<td align="left">
<xref ref-type="bibr" rid="B67">Morrison et al. (2023)</xref>
</td>
</tr>
<tr>
<td align="left">BDNF and TrkB gene expression</td>
<td align="left">Postmortem human CA1 pyramidal neurons and regional hippocampal dissections</td>
<td align="left">PCR and hybridization</td>
<td align="left">Promising EBM, if the effects in the brain can be found in non-/low invasive matrices as well</td>
<td align="left">
<xref ref-type="bibr" rid="B35">Ginsberg et al. (2019)</xref>
</td>
</tr>
<tr>
<td align="left">QPCTL, APOE, and ERCC2 gene expression</td>
<td align="left">Postmortem human hippocampus samples</td>
<td align="left">Whole genome sequencing and RNA sequencing</td>
<td align="left">Possible future EBM if the altered gene expression can be found in non/low invasive matrices, and associations with the AOs (cochlear function and cognitive function) can be confirmed in heathy individuals</td>
<td align="left">
<xref ref-type="bibr" rid="B58">Liu et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left">ATL2 gene expression</td>
<td align="left">Postmortem human brain samples</td>
<td align="left">Real-time qPCR</td>
<td align="left">Possible future EBM if the altered gene expression can be found in non/low invasive matrices, and associations with the AOs (cochlear function and cognitive function) can be confirmed in heathy individuals</td>
<td align="left">
<xref ref-type="bibr" rid="B39">Han et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left">GAS6 expression</td>
<td align="left">Postmortem human brain samples</td>
<td align="left">
<italic>In situ</italic> hybridization of hippocampus (dentate gyrus) tissue</td>
<td align="left">Possible future EBM if the altered gene expression can be found non/low invasive matrices, and associations with the AOs (cochlear function and cognitive function) can be confirmed in heathy individuals</td>
<td align="left">
<xref ref-type="bibr" rid="B86">Reemst et al. (2022)</xref>
</td>
</tr>
<tr>
<td align="left">Clock gene expression (Bmal1, Bmal2, Cry1, Cry2, Per1, Per2, and Rev-erb&#x3b1;)</td>
<td align="left">Postmortem mice hippocampus samples</td>
<td align="left">Real-time qPCR</td>
<td align="left">Possible future EBM, if validated in humans, and if the altered gene expression can be found non/low invasive matrices</td>
<td align="left">
<xref ref-type="bibr" rid="B30">Fusilier et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left">Fez1, Fez2, Bcap31 and Kmt2a gene expression</td>
<td align="left">Postmortem mice hippocampus samples</td>
<td align="left">qPCR and RNA-sequencing</td>
<td align="left">The effect is found in a heart failure mouse model, and it needs to be investigated if the same effect is seen in other models with cognitive impairment</td>
<td align="left">
<xref ref-type="bibr" rid="B43">Islam et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left">circRNA cdh9 and Trpc6 expression</td>
<td align="left">Postmortem mice samples of hippocampus, cerebellum, prefrontal cortex, and amygdala</td>
<td align="left">Real-time qPCR<break/>
<break/>Sanger sequencing</td>
<td align="left">Possible future EBM, if validated in humans, if the altered gene expression can be found non/low invasive matrices, and if associations with the AOs (cochlear function and cognitive function) can be confirmed in heathy individuals</td>
<td align="left">
<xref ref-type="bibr" rid="B31">Gasparini et al. (2020)</xref>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Abbreviations: APOE, Apolipoprotein E; ATL2, Atlastin GTPase, 2; BDNF, brain-derived neurotrophic factor; BMAL1, Basic Helix-Loop-Helix ARNT, Like 1; BMAL2, Basic Helix-Loop-Helix ARNT, Like 2; CA1, Cornu Ammonis 1; cdh9, cadherin 9; CDR, clinical dementia rating; <bold>circRNA</bold>, Circular RNA; <bold>cry1</bold>, cryptochrome circadian regulator 1; <bold>cry2</bold>, cryptochrome circadian regulator 2; EBM, effect biomarker; <bold>ERCC2</bold>, excision repair cross-complementation group 2; <bold>Fez1</bold>, Fasciculation and Elongation Protein Zeta 1; <bold>Fez2</bold>, Fasciculation and Elongation Protein Zeta 2; <bold>GAS6</bold>, Growth arrest-specific 6; <bold>KMT2A</bold>, Lysine Methyltransferase 2A; <bold>MMSE</bold>, mini mental status examination; <bold>MRI</bold>, magnetic resonance imaging; <bold>PCR</bold>, polymerase chain reaction; <bold>Per1</bold>, period circadian regulator 1; <bold>Per2</bold>, period circadian regulator 2; <bold>qPCR</bold>, quantitative polymerase chain reaction; <bold>QPCTL</bold>, Glutaminyl-Peptide Cyclotransferase Like; Rev-erb&#x3b1;, nuclear receptor subfamily 1 group D member 1; <bold>SNIPE</bold>, scoring by nonlocal image patch estimator; <bold>TrkB</bold>, Tropomyosin receptor kinase B; <bold>Trpc6</bold>, transient receptor potential cation channel subfamily C member 6; <bold>WMS</bold>, wechsler memory scale.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec sec-type="results" id="s3">
<label>3</label>
<title>Results</title>
<p>A total of 32 AOPs related to thyroid hormone pathways were identified in the AOP-wiki (<xref ref-type="sec" rid="s11">Supplementary Table S1</xref>), and for 11 AOPs the taxonomic applicability was mammal (human or rodent). However, one AOP (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/402">402</ext-link>) did not include any events at the time of extraction. The 10 AOPs included 5 unique adverse outcomes (AOs) and 32 unique molecular initiating events (MIEs)/key events (KEs) (<xref ref-type="sec" rid="s11">Supplementary Tables S2a, b</xref>). The network of the included AOPs is given in <xref ref-type="fig" rid="F1">Figure 1</xref>. Of the 21 excluded non-mammalian AOPs, many focused on reduced anterior swim bladder inflation (n &#x3d; 5) and altered amphibian metamorphosis (n &#x3d; 11), not being relevant for human epidemiological studies (<xref ref-type="sec" rid="s11">Supplementary Table S1</xref>).</p>
<p>As seen from the network (<xref ref-type="fig" rid="F1">Figure 1</xref>), the early events are often related to the thyroid hormone system and included in several AOPs, whereas the late events are more specific to the AOs. Thus, even though the early events may be detectable in epidemiological studies before the later events, they may not be specific to the AOs. This supported the focus on late events and AOs for identifying effect biomarkers (EBMs) suitable for human studies.</p>
<p>Several reviews and guidelines are already available for the measurement of thyroid hormones in blood (<xref ref-type="bibr" rid="B18">D&#x27;Aurizio et al., 2023</xref>; <xref ref-type="bibr" rid="B103">Van Uytfanghe et al., 2023</xref>). Therefore, we primarily focused our search on EBMs for the more specific late events but suggest including some EBMs related to thyroid disruption, such as serum thyroid-stimulating hormone (TSH) and thyroxine (T4), in epidemiological studies to support interpretation in relation to upstream endocrine disruption.</p>
<p>Mapping of the 10 mammalian-relevant AOPs resulted in four mechanistic clusters (<xref ref-type="fig" rid="F1">Figure 1</xref>):</p>
<p>Cluster 1: Hippocampal alterations related to loss of cochlear function and decreased cognitive function.</p>
<p>Cluster 2: Reduced levels brain-derived neurotrophic factor (BDNF) and function of the neurons related to impaired learning and memory.</p>
<p>Cluster 3: Increase in hypertrophy, proliferation, and hyperplasia in thyroid follicular cells related to adenomas/carcinomas in thyroid follicular cells.</p>
<p>Cluster 4: Events related to kidney toxicity.</p>
<sec id="s3-1">
<label>3.1</label>
<title>Hippocampal alterations related to loss of cochlear function and decreased cognitive function</title>
<p>Five AOPs (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/8">8</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/42">42</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/134">134</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/152">152</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/300">300</ext-link>) with similar KEs on alterations of the hippocampus were identified (<xref ref-type="fig" rid="F1">Figure 1</xref>; Cluster 1). The hippocampal KEs were altered hippocampal gene expression (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/756">756</ext-link>), altered hippocampal anatomy (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/757">757</ext-link>), and altered hippocampal physiology (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/758">758</ext-link>). The five AOPs had two common AOs: loss of cochlear function (AO <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/319">319</ext-link>) and decreased cognitive function (AO <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/402">402</ext-link>).</p>
<p>We found human relevant measurement methods being described in AOP-wiki, however, the methods were generally not applicable for epidemiological studies as they required brain tissue, e.g., to measure altered gene expression in the hippocampus (<xref ref-type="bibr" rid="B116">Zhang et al., 2002</xref>). Some non-invasive, but demanding methods were described in AOP-wiki, such as electroencephalography and structural and functional magnetic resonance imaging. These techniques have been used in several human studies to assess associations between thyroid hormone levels and hippocampal volume/function and cognitive function (<xref ref-type="bibr" rid="B97">Smith and Jonides, 1997</xref>; <xref ref-type="bibr" rid="B110">Willoughby et al., 2014</xref>; <xref ref-type="bibr" rid="B109">Wheeler et al., 2015</xref>; <xref ref-type="bibr" rid="B33">Gilbert et al., 1995</xref>). Even though the techniques are well accepted, they are not feasible for larger epidemiological studies due to the requirement of extensive equipment and procedures.</p>
<p>Thus, we searched PubMed for potential EBMs for hippocampal alterations. Of the 56 studies, 8 studies (<xref ref-type="bibr" rid="B67">Morrison et al., 2023</xref>; <xref ref-type="bibr" rid="B35">Ginsberg et al., 2019</xref>; <xref ref-type="bibr" rid="B58">Liu et al., 2021</xref>; <xref ref-type="bibr" rid="B39">Han et al., 2021</xref>; <xref ref-type="bibr" rid="B86">Reemst et al., 2022</xref>; <xref ref-type="bibr" rid="B30">Fusilier et al., 2021</xref>; <xref ref-type="bibr" rid="B43">Islam et al., 2021</xref>; <xref ref-type="bibr" rid="B31">Gasparini et al., 2020</xref>) were published in 2018 or later and included relevant information on possible EBMs (<xref ref-type="table" rid="T1">Table 1</xref>). Even though two AOs (decrease cognitive function (AO <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/402">402</ext-link>) and loss of cochlear function (AO <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/319">319</ext-link>)) were included in the 5 AOPs relevant to this search (<xref ref-type="fig" rid="F1">Figure 1</xref>), all 8 included studies focused on decreased cognitive function and especially Alzheimer&#x2019;s disease, reflecting the available human evidence base for hippocampal dysfunction.</p>
<p>One study (<xref ref-type="bibr" rid="B67">Morrison et al., 2023</xref>) measured the hippocampal grading in humans with magnetic resonance imaging using scoring by Nonlocal Image Patch Estimator (SNIPE) (<xref ref-type="table" rid="T1">Table 1</xref>). They were able to accurately classify people with normal cognitive function from those with cognitive impairment and Alzheimer&#x2019;s disease. Even though the tool could be promising for detecting early/mild cognitive impairment in a clinical setting, using magnetic resonance imaging in larger epidemiological studies may be too inconvenient and logistically challenging (<xref ref-type="bibr" rid="B67">Morrison et al., 2023</xref>).</p>
<p>The remaining studies measured gene expression levels in postmortem brain/hippocampus tissue, in either humans (<xref ref-type="bibr" rid="B35">Ginsberg et al., 2019</xref>; <xref ref-type="bibr" rid="B58">Liu et al., 2021</xref>; <xref ref-type="bibr" rid="B39">Han et al., 2021</xref>; <xref ref-type="bibr" rid="B86">Reemst et al., 2022</xref>) or mice (<xref ref-type="bibr" rid="B30">Fusilier et al., 2021</xref>; <xref ref-type="bibr" rid="B43">Islam et al., 2021</xref>; <xref ref-type="bibr" rid="B31">Gasparini et al., 2020</xref>) (<xref ref-type="table" rid="T1">Table 1</xref>). Before the possible EBMs can be used in epidemiological studies, they need to be validated in non-/low invasive human matrices such as blood, urine, or saliva.</p>
<p>One of the most promising EBMs identified is the brain-derived neurotrophic factor (BDNF), which has been identified previously as an EBM for neurological outcomes/behavioural function (<xref ref-type="bibr" rid="B90">Rodr&#xed;guez-Carrillo et al., 2023a</xref>; <xref ref-type="bibr" rid="B73">Mustieles et al., 2022</xref>). It has already been verified in several epidemiological studies showing that BDNF can be measured in serum, plasma, and urine. High serum BDNF level has also recently been associated with decreased risk of poststroke cognitive impairment after 3 months (<xref ref-type="bibr" rid="B14">Chang et al., 2024</xref>). However, to our knowledge, there are no studies in human investigating if the BDNF level in blood and urine is correlated with the BDNF level in the hippocampus, however it is likely, as studies have shown positive correlations between blood and hippocampal BDNF levels in animal models (<xref ref-type="bibr" rid="B51">Klein et al., 2011</xref>).</p>
<p>Many of the included studies utilized samples from Alzheimer&#x2019;s patients (<xref ref-type="bibr" rid="B67">Morrison et al., 2023</xref>; <xref ref-type="bibr" rid="B35">Ginsberg et al., 2019</xref>; <xref ref-type="bibr" rid="B58">Liu et al., 2021</xref>; <xref ref-type="bibr" rid="B39">Han et al., 2021</xref>) or from mouse models for Alzheimer&#x2019;s disease (<xref ref-type="bibr" rid="B30">Fusilier et al., 2021</xref>) (<xref ref-type="table" rid="T1">Table 1</xref>). Alzheimer&#x2019;s is known for its impact on the hippocampus. It&#x27;s important to note that some of the EBMs might only emerge after Alzheimer&#x2019;s disease has become evident. Therefore, these biomarkers may not be effective in early detection of cognitive impairment in epidemiological studies. Some thyroid hormones (free triiodthyronin (fT3) and total triiodthyronin (T3)) have been associated with Alzheimer&#x2019;s, whereas no associations were seen for thyroid-stimulating hormone (TSH) or thyroxine (T4) in a meta-analysis (<xref ref-type="bibr" rid="B21">Dolatshahi et al., 2023</xref>).</p>
</sec>
<sec id="s3-2">
<label>3.2</label>
<title>Reduced levels brain-derived neurotrophic factor (BDNF) and function of the neurons related to impaired learning and memory</title>
<p>One AOP (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/54">54</ext-link>) on impaired learning and memory was identified (<xref ref-type="fig" rid="F1">Figure 1</xref>; Cluster 2). The AOP includes 1 MIE and 9 KEs, and is reviewed and endorsed. We have focused our search on EBMs on the four late KEs: 1. reduced levels of BDNF (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/381">381</ext-link>), 2. decrease of GABAergic interneurons (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/851">851</ext-link>), 3. decrease of synaptogenesis (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/385">385</ext-link>), and 4. decrease of neuronal network function (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/386">386</ext-link>).</p>
<p>The KEs are generally well described in AOP-wiki, and the description also includes information on measurement methods. AOP-wiki includes measurement methods for BDNF applicable for epidemiological studies, and BDNF can be measured by available commercial ELISA kits in whole blood, serum, plasma, platelets, and urine (<xref ref-type="bibr" rid="B100">Trajkovska et al., 2007</xref>). Furthermore, the EBM has been validated as a marker for neurological outcomes/behavioural function in epidemiological studies (<xref ref-type="bibr" rid="B73">Mustieles et al., 2022</xref>; <xref ref-type="bibr" rid="B91">Rodr&#xed;guez-Carrillo et al., 2023b</xref>).</p>
<p>For the remaining KEs, the measurement methods in AOP-wiki were less applicable for epidemiological studies, including for instance immunohistochemical staining on brain tissue and different types of electroencephalography measurements. Therefore, we searched PubMed on relevant novel EBMs for the remaining three late KEs. Twenty articles (<xref ref-type="bibr" rid="B111">Woodworth et al., 2018</xref>; <xref ref-type="bibr" rid="B50">Kivim&#xe4;ki et al., 2021</xref>; <xref ref-type="bibr" rid="B69">Mullins et al., 2021</xref>; <xref ref-type="bibr" rid="B92">R&#xfc;bsamen et al., 2022</xref>; <xref ref-type="bibr" rid="B16">Cortese et al., 2020</xref>; <xref ref-type="bibr" rid="B45">Kantrowitz et al., 2021</xref>; <xref ref-type="bibr" rid="B64">McClure et al., 2022</xref>; <xref ref-type="bibr" rid="B23">Dyrba et al., 2018</xref>; <xref ref-type="bibr" rid="B87">Richard et al., 2023</xref>; <xref ref-type="bibr" rid="B22">Dong et al., 2023</xref>; <xref ref-type="bibr" rid="B44">Kaar et al., 2019</xref>; <xref ref-type="bibr" rid="B60">L&#xf3;pez-Cerd&#xe1;n et al., 2022</xref>; <xref ref-type="bibr" rid="B15">Christiansen et al., 2018</xref>; <xref ref-type="bibr" rid="B59">Logan et al., 2020</xref>; <xref ref-type="bibr" rid="B25">Fagan et al., 2021</xref>; <xref ref-type="bibr" rid="B74">Ng et al., 2021</xref>; <xref ref-type="bibr" rid="B7">Blennow et al., 2019</xref>; <xref ref-type="bibr" rid="B24">Fabbri et al., 2018</xref>; <xref ref-type="bibr" rid="B66">Morphett et al., 2024</xref>; <xref ref-type="bibr" rid="B34">Gillespie et al., 2024</xref>) published in 2018 or later included relevant information on possible EBMs (<xref ref-type="table" rid="T2">Table 2</xref>). Of the evaluated studies, 8 studies (<xref ref-type="bibr" rid="B111">Woodworth et al., 2018</xref>; <xref ref-type="bibr" rid="B50">Kivim&#xe4;ki et al., 2021</xref>; <xref ref-type="bibr" rid="B69">Mullins et al., 2021</xref>; <xref ref-type="bibr" rid="B92">R&#xfc;bsamen et al., 2022</xref>; <xref ref-type="bibr" rid="B16">Cortese et al., 2020</xref>; <xref ref-type="bibr" rid="B45">Kantrowitz et al., 2021</xref>; <xref ref-type="bibr" rid="B64">McClure et al., 2022</xref>; <xref ref-type="bibr" rid="B23">Dyrba et al., 2018</xref>) included potential future EBMs that could be used for human epidemiological studies.</p>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Possible effect biomarkers for neuron function related to impaired learning and memory (Cluster 2 in <xref ref-type="fig" rid="F1">Figure 1</xref>).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Effect marker</th>
<th align="left">Matrix</th>
<th align="left">Measurement methods</th>
<th align="left">Comments/Recommended for human epidemiological studies (why, why not)</th>
<th align="left">References</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">BDNF</td>
<td align="left">Whole blood, serum, plasma, platelets, and urine</td>
<td align="left">ELISA</td>
<td align="left">Recommended for human epidemiological studies</td>
<td align="left">
<xref ref-type="bibr" rid="B100">Trajkovska et al. (2007)</xref>, <xref ref-type="bibr" rid="B73">Mustieles et al. (2022)</xref>, <xref ref-type="bibr" rid="B91">Rodr&#xed;guez-Carrillo et al. (2023b)</xref>
</td>
</tr>
<tr>
<td align="left">Urinary VEGF and its receptor (VEGFR1), MMP2, MMP9, NGAL, Lipocalin 2, and the MMP9/NGAL complex</td>
<td align="left">Human urine</td>
<td align="left">Total protein: Bradford method<break/>Specific proteins: ELISA.</td>
<td align="left">Possible future EBM and recommended for human epidemiological studies, and if associations with the AO (cognitive function) can be confirmed in heathy individuals</td>
<td align="left">
<xref ref-type="bibr" rid="B111">Woodworth et al. (2018)</xref>
</td>
</tr>
<tr>
<td align="left">SPD, SLIT2, HXK2, CHSTC, AMD, and NCF-1</td>
<td align="left">Human plasma</td>
<td align="left">SomaScan version 4 assay</td>
<td align="left">Recommended for human epidemiological studies, if associations with the AO (cognitive function) can be confirmed in heathy individuals</td>
<td align="left">
<xref ref-type="bibr" rid="B50">Kivim&#xe4;ki et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left">Gene (genomic and expression), such as HTR6, MCHR1, DCLK3 and FURIN</td>
<td align="left">Human brain and whole blood sample</td>
<td align="left">GWAS and TWAS</td>
<td align="left">Possible future EBM if the altered gene expression can be found in non/low invasive matrices, and associations with the AOs (cochlear function and cognitive function) can be confirmed in heathy individuals</td>
<td align="left">
<xref ref-type="bibr" rid="B69">Mullins et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left">Cerebrospinal fluid and blood biomarker proteins (14-3-3&#x3b2;, 14&#x2013;3-3&#x3b3;, S100B, t-tau)</td>
<td align="left">Human cerebrospinal fluid and blood</td>
<td align="left">Proteins: Western blot and ELISA.</td>
<td align="left">Possible future EBM and recommended for human epidemiological studies, however it is not clear from the publication if the specific biomarkers were measured in cerebrospinal fluid or blood</td>
<td align="left">
<xref ref-type="bibr" rid="B92">R&#xfc;bsamen et al. (2022)</xref>
</td>
</tr>
<tr>
<td align="left">Vit D</td>
<td align="left">Human serum</td>
<td align="left">ELISA</td>
<td align="left">Possible future EBM combined with other EBMs, due to non specificity and seasonal variation</td>
<td align="left">
<xref ref-type="bibr" rid="B16">Cortese et al. (2020)</xref>
</td>
</tr>
<tr>
<td align="left">Glu, Glx, and GABA</td>
<td align="left">Brain imaging of human brain</td>
<td align="left">
<sup>1</sup>H MRS</td>
<td align="left">Possible EBM, however, for epidemiological studies the EBM may not be very useful, as the <sup>1</sup>H MRS measurement is very inconvenient and time-consuming</td>
<td align="left">
<xref ref-type="bibr" rid="B45">Kantrowitz et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left">Hippocampal neurochemical profile (e.g Cr, PCr, Glc, Tau)</td>
<td align="left">Brain imaging of rat hippocampus</td>
<td align="left">
<sup>1</sup>H MRS</td>
<td align="left">Possible EBM, if validated in humans. Furthermore, for larger epidemiological studies the EBM may not be very useful, as the <sup>1</sup>H MRS measurement is very inconvenient and time-consuming</td>
<td rowspan="2" align="left">
<xref ref-type="bibr" rid="B64">McClure et al. (2022)</xref>
</td>
</tr>
<tr>
<td align="left">Gene expression of Insr, Glut8, Parp1, and Nfkb</td>
<td align="left">Rat hippocampus brain tissue</td>
<td align="left">Real-time qPCR</td>
<td align="left">Possible future effect, if validated in humans, and if the altered gene expression can be found non/low invasive matrices</td>
</tr>
<tr>
<td align="left">Mean amyloid load, glucose metabolism, and gray matter volume</td>
<td align="left">Brain imaging of human brain</td>
<td align="left">Imaging technics: PET, MRI and the additional use of Multimodal Markov random field models</td>
<td align="left">Recommended for human epidemiological studies, however for larger studies the EBM may not be useful due to the inconvenience and logistically challenging with brain imaging</td>
<td align="left">
<xref ref-type="bibr" rid="B23">Dyrba et al. (2018)</xref>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Abbreviations: <sup>1</sup>H MRS, proton magnetic resonance spectroscopy; AO, adverse outcome; <bold>AMD</bold>, peptidyl-glycine &#x3b1;-amidating monooxygenase; BDNF, brain-derived neurotrophic factor; <bold>CHSTC</bold>; carbohydrate sulfotransferase 12; Cr, creatine; DCLK3, doublecortin like kinase 3; ELISA, Enzyme-linked immunosorbent assay; EBM, effect biomarker; FURIN, furin; GABA, gamma-aminobutyric acid; Glc, Glucose; Glx, glutamate; GWAS, Genome-wide association study; HTR6, 5-hydroxytryptamine receptor 6; HXK2, hexokinase 2; Insr, Insulin receptor; MCHR1, melanin concentrating hormone receptor 1; MMP-2, matrix metalloproteinase- 2; MMP9, matrix metalloproteinase- 9; NCF-1, neutrophil cytosol factor 1; Nfkb, nuclear factor kappa B; NGAL, neutrophil gelatinaseassociated lipocalin; Parp1, poly (ADP-ribose) polymerase 1; PCr, phosphocreatine; PET, positron emission tomography; qPCR, quantitative polymerase chain reaction; SLIT2, slit homologue 2 protein; SPD, Protein levels of protein D; Tau, taurine; t-tau, total taurine; TWAS, transcriptome-wide association study; VEGF, vascular endothelial growth factor; VEGFR1, Vascular endothelial growth factor receptor 1; Vit D, 25-hydroxyvitamin-D (25(OH)D).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>One study (<xref ref-type="bibr" rid="B111">Woodworth et al., 2018</xref>) measured urinary protein levels of metalloproteinase-9 (MMP9) and MMP9/Neutrophil gelatinase-associated lipocalin (NGAL) complex and found that higher levels may enhance neuronal damage in the brainstem nuclei and enhance plasticity of sensorimotor regions in human patients with urological chronic pelvic pain syndrome (<xref ref-type="table" rid="T2">Table 2</xref>). Further validation of the associations with the KEs and the AOs in healthy individuals are, however, needed before implementation of the EBMs in epidemiological studies.</p>
<p>Four studies used blood as a matrix and measured protein levels (<xref ref-type="bibr" rid="B50">Kivim&#xe4;ki et al., 2021</xref>; <xref ref-type="bibr" rid="B92">R&#xfc;bsamen et al., 2022</xref>), gene expressions (<xref ref-type="bibr" rid="B69">Mullins et al., 2021</xref>), and vitamin D (<xref ref-type="bibr" rid="B16">Cortese et al., 2020</xref>) (<xref ref-type="table" rid="T2">Table 2</xref>). The studies were conducted in people with diseases (multiple sclerosis, bipolar disorder, Alzheimer&#x2019;s disease, sporadic Creutzfeldt-Jakob disease) (<xref ref-type="bibr" rid="B50">Kivim&#xe4;ki et al., 2021</xref>; <xref ref-type="bibr" rid="B69">Mullins et al., 2021</xref>; <xref ref-type="bibr" rid="B92">R&#xfc;bsamen et al., 2022</xref>; <xref ref-type="bibr" rid="B16">Cortese et al., 2020</xref>). Thus, in all cases further validation of the associations with the KEs and the AOs in healthy human individuals are needed before implementation of the EBMs in epidemiological studies.</p>
<p>Three studies (<xref ref-type="bibr" rid="B45">Kantrowitz et al., 2021</xref>; <xref ref-type="bibr" rid="B64">McClure et al., 2022</xref>; <xref ref-type="bibr" rid="B23">Dyrba et al., 2018</xref>), with potential future EBMs, used brain imaging of rodent and human brains to evaluate the neuron function (<xref ref-type="table" rid="T2">Table 2</xref>). These methods can be used in human studies, however, for larger epidemiological studies the inconvenience and logistic challenges may be difficult to overcome.</p>
<p>The remaining 12 studies (<xref ref-type="bibr" rid="B87">Richard et al., 2023</xref>; <xref ref-type="bibr" rid="B22">Dong et al., 2023</xref>; <xref ref-type="bibr" rid="B44">Kaar et al., 2019</xref>; <xref ref-type="bibr" rid="B60">L&#xf3;pez-Cerd&#xe1;n et al., 2022</xref>; <xref ref-type="bibr" rid="B15">Christiansen et al., 2018</xref>; <xref ref-type="bibr" rid="B59">Logan et al., 2020</xref>; <xref ref-type="bibr" rid="B25">Fagan et al., 2021</xref>; <xref ref-type="bibr" rid="B74">Ng et al., 2021</xref>; <xref ref-type="bibr" rid="B7">Blennow et al., 2019</xref>; <xref ref-type="bibr" rid="B24">Fabbri et al., 2018</xref>; <xref ref-type="bibr" rid="B66">Morphett et al., 2024</xref>; <xref ref-type="bibr" rid="B34">Gillespie et al., 2024</xref>) without potential EBMs recommended for human epidemiological studies mainly used invasive samples (e.g., brain tissue and cerebrospinal fluid) as a matrix. These studies may increase the understanding of the mechanisms involved in the pathways towards AOs and disease (<xref ref-type="sec" rid="s11">Supplementary Table S4</xref>).</p>
</sec>
<sec id="s3-3">
<label>3.3</label>
<title>Increase in hypertrophy, proliferation, and hyperplasia in thyroid follicular cells related to adenomas/carcinomas in thyroid follicular cells</title>
<p>Three AOPs (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/110">110</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/119">119</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/162">162</ext-link>) with increase in adenomas/carcinomas in thyroid follicular cells as AO (AO <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/741">741</ext-link>) were identified, and included several identical KEs (<xref ref-type="fig" rid="F1">Figure 1</xref>; Cluster 3). We have focused our search on EBMs for the two late KEs: increase in hypertrophy and proliferation (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/739">739</ext-link>) and increase in hyperplasia (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/740">740</ext-link>) in follicular cells.</p>
<p>The description of the two KEs in AOP-wiki is very limited and does not include any information on measurement methods. Therefore, we searched PubMed, and of 115 hits, 13 articles were published in 2018 or later and included relevant information on possible EBMs for increase in hypertrophy, proliferation, and hyperplasia thyroid and/or adenomas/carcinomas in thyroid follicular cells (<xref ref-type="bibr" rid="B117">Zhang P. et al., 2020</xref>; <xref ref-type="bibr" rid="B1">Ameziane et al., 2019</xref>; <xref ref-type="bibr" rid="B38">Halsall and Oddy, 2021</xref>; <xref ref-type="bibr" rid="B112">Yan et al., 2021</xref>; <xref ref-type="bibr" rid="B107">Wang et al., 2020</xref>; <xref ref-type="bibr" rid="B6">Bertoni et al., 2021</xref>; <xref ref-type="bibr" rid="B78">Pang and Yang, 2021</xref>; <xref ref-type="bibr" rid="B105">Wang et al., 2018</xref>; <xref ref-type="bibr" rid="B119">Zhou et al., 2018</xref>; <xref ref-type="bibr" rid="B41">Hong et al., 2023</xref>; <xref ref-type="bibr" rid="B5">Bertoni et al., 2019</xref>; <xref ref-type="bibr" rid="B68">Mostoufi-Moab et al., 2018</xref>; <xref ref-type="bibr" rid="B83">Qu et al., 2020</xref>).</p>
<p>The information on possible EBMs in the 13 included studies are listed in <xref ref-type="table" rid="T3">Table 3</xref>.</p>
<table-wrap id="T3" position="float">
<label>TABLE 3</label>
<caption>
<p>Possible effect biomarkers for increase in hypertrophy, proliferation, and hyperplasia in follicular cells and/or adenomas/carcinomas in follicular cells (Cluster 3 in <xref ref-type="fig" rid="F1">Figure 1</xref>).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Effect marker</th>
<th align="left">Matrix</th>
<th align="left">Measurement methods</th>
<th align="left">Comments/Recommended for human epidemiological studies (why, why not)</th>
<th align="left">References</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">IL-34</td>
<td align="left">Human serum</td>
<td align="left">ELISA</td>
<td align="left">Potential EBM, however, related to several other diseases and is not specifically related to adenomas/carcinomas in follicular cell</td>
<td align="left">
<xref ref-type="bibr" rid="B118">Zhang X. et al. (2020)</xref>
</td>
</tr>
<tr>
<td align="left">Oxidative stress (TAS, TOS, ratio of TOS to TAS)</td>
<td align="left">Human serum/Whole Blood</td>
<td align="left">Commercial kits; Electronic paramagnetic resonance</td>
<td align="left">Potential EBM, however, related to several other diseases and is not specifically related to adenomas/carcinomas in follicular cell</td>
<td align="left">
<xref ref-type="bibr" rid="B1">Ameziane et al. (2019)</xref>
</td>
</tr>
<tr>
<td align="left">Reverse T3</td>
<td align="left">Human serum</td>
<td align="left">Mass-spectrometric methods</td>
<td align="left">Potential EBM, however, related to several other diseases and is not specifically related to adenomas/carcinomas in follicular cell</td>
<td align="left">
<xref ref-type="bibr" rid="B38">Halsall and Oddy (2021)</xref>
</td>
</tr>
<tr>
<td align="left">ARHGAP36 gene expression</td>
<td align="left">Primary human papillary thyroid carcinoma; metastasis lymph node; precancerous tissue</td>
<td align="left">Immunohistochemistry staining; Real-time qPCR</td>
<td align="left">Possible future EBM, however, the study was conducted on thyroid tissue and lymph node, a matrix not normally available in large epidemiological studies</td>
<td align="left">
<xref ref-type="bibr" rid="B112">Yan et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left">S100A12 gene expression</td>
<td align="left">Human papillary thyroid carcinoma tissue and adjacent non-cancerous tissue</td>
<td align="left">Immunohistochemistry staining; Western blot assay</td>
<td align="left">Possible future EBM, however, the study was conducted on thyroid tissue and lymph node, a matrix not normally available in large epidemiological studies</td>
<td align="left">
<xref ref-type="bibr" rid="B107">Wang et al. (2020)</xref>
</td>
</tr>
<tr>
<td align="left">GPER1 gene expression</td>
<td align="left">Human thyroid tumour versus matched non-cancerous thyroid tissues</td>
<td align="left">Real-time-qPCR; <break/>Immunohistochemistry</td>
<td align="left">Possible future EBM, however, the study was conducted on thyroid tissue and lymph node, a matrix not normally available in large epidemiological studies</td>
<td align="left">
<xref ref-type="bibr" rid="B6">Bertoni et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left">DUXAP8</td>
<td align="left">Human tumour tissues and the adjacent normal tissues</td>
<td align="left">qPCR; Western blot</td>
<td align="left">Possible future EBM, however, the study was conducted on thyroid tissue and lymph node, a matrix not normally available in large epidemiological studies</td>
<td align="left">
<xref ref-type="bibr" rid="B78">Pang and Yang (2021)</xref>
</td>
</tr>
<tr>
<td align="left">miRNA &#x201c;hsa-miR-200a-5p&#x201d;</td>
<td align="left">Human papillary benign thyroid tumours with papillary hyperplasia versus thyroid carcinomas patients</td>
<td align="left">qPCR; Immunohistochemistry</td>
<td align="left">Possible future EBM, however, the study was conducted on thyroid tissue and lymph node, a matrix not normally available in large epidemiological studies</td>
<td align="left">
<xref ref-type="bibr" rid="B105">Wang et al. (2018)</xref>
</td>
</tr>
<tr>
<td align="left">circRNA &#x201c;has_circ_0008274&#x201d;</td>
<td align="left">Human papillary thyroid cancer tissue and matched adjacent tissues</td>
<td align="left">qPCR; Western blot</td>
<td align="left">Possible future EBM, however, the study was conducted on thyroid tissue and lymph node, a matrix not normally available in large epidemiological studies</td>
<td align="left">
<xref ref-type="bibr" rid="B119">Zhou et al. (2018)</xref>
</td>
</tr>
<tr>
<td align="left">TSP1 gene expression and slicing variants</td>
<td align="left">Human thyroid carcinoma tissue versus adjacent non-malignant thyroid tissue</td>
<td align="left">Antibody array, Real-time-PCR</td>
<td align="left">Possible future EBM, however, the study was conducted on thyroid tissue and lymph node, a matrix not normally available in large epidemiological studies</td>
<td align="left">
<xref ref-type="bibr" rid="B41">Hong et al. (2023)</xref>
</td>
</tr>
<tr>
<td align="left">AMPase activity and NT5E expression</td>
<td align="left">Human papillary thyroid carcinoma tissue versus adjacent non-malignant thyroid tissue</td>
<td align="left">Enzymatic activities of ectonucleotidases; qPCR</td>
<td align="left">Possible future EBM, however, the study was conducted on thyroid tissue and lymph node, a matrix not normally available in large epidemiological studies</td>
<td align="left">
<xref ref-type="bibr" rid="B5">Bertoni et al. (2019)</xref>
</td>
</tr>
<tr>
<td align="left">Variations in RAS, RET/PTC rearrangement and BRAF</td>
<td align="left">Human tissue of different stages/types of thyroid follicular carcinomas</td>
<td align="left">qPCR</td>
<td align="left">The somatic variations may serve as a future EBM, if the variations could be detected in blood samples/circulating tumour cells</td>
<td align="left">
<xref ref-type="bibr" rid="B68">Mostoufi-Moab et al. (2018)</xref>
</td>
</tr>
<tr>
<td align="left">Somatic variations in RET (RTK/RAS pathway)</td>
<td align="left">Primary human thyroid tumour versus matched noncancerous thyroid tissues</td>
<td align="left">Whole-exome sequencing on DNA extracted from tissue</td>
<td align="left">The somatic variations may serve as a future EBM, if the variations could be detected in blood samples/circulating tumour cells</td>
<td align="left">
<xref ref-type="bibr" rid="B83">Qu et al. (2020)</xref>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Abbreviations: AMPase, Adenosine 5&#x2032;-monophosphatase; ARHGAP36, Rho GTPase, activating protein 36; BRAF, B-Raf proto-oncogene, serine/threonine kinase; circRNA, Circular RNA; DUXAP8, double homeobox A pseudogene 8; ELISA, Enzyme-linked immunosorbent assay; EBM, effect biomarker; GPER1, G protein-coupled estrogen receptor 1; IL-34, Interleukin 34; miRNA, micro RNA; NT5E, 5&#x2032;-nucleotidase ecto; PCR, polymerase chain reaction; qPCR, quantitative polymerase chain reaction; S100A12, S100 calcium binding protein A12; T3, triiodothyronine; TAS, total antioxidant status; TOS, total oxidant status; TSP1, tumor suppressor region 1.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>A potential EBM in blood is interleukin-34 (IL-34), which is increased in both tumour tissue and serum of papillary thyroid cancer patients compared with age-matched controls (<xref ref-type="bibr" rid="B117">Zhang P. et al., 2020</xref>) (<xref ref-type="table" rid="T3">Table 3</xref>). The expression of serum IL-34 was also significantly associated with tumour size, tumour stage, and lymph node metastasis (<xref ref-type="bibr" rid="B118">Zhang P. et al., 2020</xref>). IL-34 has also been found to play a role in many other cancer types, such as hepatocarcinoma, osteosarcoma, multiple myeloma, colon cancer, and lung cancer (<xref ref-type="bibr" rid="B29">Franz&#xe8; et al., 2020</xref>). Furthermore, IL-34 has been linked to several other disease types including autoimmune disorders, infections, neurological disorders and metabolic diseases, indicating that it is not very specific as EBM (<xref ref-type="bibr" rid="B4">Baghdadi et al., 2018</xref>).</p>
<p>Two other EBMs measurable in serum, oxidative stress (<xref ref-type="bibr" rid="B1">Ameziane et al., 2019</xref>) and reverse triiodothyronine (rT3) (<xref ref-type="bibr" rid="B38">Halsall and Oddy, 2021</xref>), have been identified in the literature (<xref ref-type="table" rid="T3">Table 3</xref>). They are, however, too unspecific to be EBMs alone on increase in hypertrophy, proliferation, hyperplasia and/or adenomas/carcinomas in thyroid follicular cells but might serve as EBMs in combination with other markers.</p>
<p>Eight studies (<xref ref-type="bibr" rid="B112">Yan et al., 2021</xref>; <xref ref-type="bibr" rid="B107">Wang et al., 2020</xref>; <xref ref-type="bibr" rid="B6">Bertoni et al., 2021</xref>; <xref ref-type="bibr" rid="B78">Pang and Yang, 2021</xref>; <xref ref-type="bibr" rid="B105">Wang et al., 2018</xref>; <xref ref-type="bibr" rid="B119">Zhou et al., 2018</xref>; <xref ref-type="bibr" rid="B41">Hong et al., 2023</xref>; <xref ref-type="bibr" rid="B5">Bertoni et al., 2019</xref>) have identified differences in expression of genes, microRNA and circularRNA, as well as slicing variants and adenosine monophosphatase (AMPase) activity between tumour tissue and matched adjacent or normal non-cancerous tissue (<xref ref-type="table" rid="T3">Table 3</xref>). These markers may serve as future EBMs, if the differences can be detected in blood samples or other non-/low invasive matrixes which can be collected in larger epidemiological studies. Development and validation of these suggested EBMs need further studies.</p>
<p>Two studies (<xref ref-type="bibr" rid="B68">Mostoufi-Moab et al., 2018</xref>; <xref ref-type="bibr" rid="B83">Qu et al., 2020</xref>) found somatic and germline DNA variations present in the thyroid tumours compared to non-cancerous tissues (<xref ref-type="table" rid="T3">Table 3</xref>). The somatic variation might serve as future EBMs if detectable in blood samples. Both studies found somatic variations related to the receptor tyrosine kinase (RTK)/RAS pathway (<xref ref-type="bibr" rid="B68">Mostoufi-Moab et al., 2018</xref>; <xref ref-type="bibr" rid="B83">Qu et al., 2020</xref>), which could be relevant to investigate more in relation to EBMs, as well as the hippo pathway identified by Qu et al. (<xref ref-type="bibr" rid="B83">Qu et al., 2020</xref>).</p>
</sec>
<sec id="s3-4">
<label>3.4</label>
<title>Events related to kidney toxicity</title>
<p>One AOP (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/128">128</ext-link>) on kidney toxicity was identified as a thyroid-related AOP (<xref ref-type="fig" rid="F1">Figure 1</xref>; Cluster 4). The AOP includes two events related to thyroid hormone balance (MIE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/277">277</ext-link> and KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/281">281</ext-link>), increased serum creatinine (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/813">813</ext-link>) and seven late KEs related to kidney function including cystic dilatation (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/823">823</ext-link>), cytoplasmic vacuolization (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/818">818</ext-link> and KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/824">824</ext-link>), decrease renal plasma flow (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/820">820</ext-link>), sodium reabsorption (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/821">821</ext-link>), ability to dilute urine (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/825">825</ext-link>), and glomerular filtration (KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/819">819</ext-link>).</p>
<p>The descriptions of the AOP and KEs in AOP-wiki are very limited and do not include any information on measurement methods. However, several EBMs of kidney function have already been identified and reviewed by others (<xref ref-type="bibr" rid="B115">Zare et al., 2021</xref>; <xref ref-type="bibr" rid="B90">Rodr&#xed;guez-Carrillo et al., 2023a</xref>; <xref ref-type="bibr" rid="B61">Lopez-Giacoman and Madero, 2015</xref>; <xref ref-type="bibr" rid="B26">Fassett et al., 2011</xref>; <xref ref-type="bibr" rid="B108">Wasung et al., 2015</xref>; <xref ref-type="bibr" rid="B46">Kidney Disease: Improving Global Outcomes KDIGO, 2013</xref>; <xref ref-type="bibr" rid="B114">Younes-Ibrahim and Younes-Ibrahim, 2022</xref>). Therefore, we have not conducted additional systematic literature searches, but <xref ref-type="table" rid="T4">Table 4</xref> comprises the most relevant information on the already identified EBMs. In <xref ref-type="table" rid="T4">Table 4</xref>, we have also indicated the potential relationship between the EBMs and the KEs. However, establishing definitive connections is challenging due to the limited information available in AOP-wiki regarding the AOP and KEs.</p>
<table-wrap id="T4" position="float">
<label>TABLE 4</label>
<caption>
<p>Effect biomarkers identified for kidney toxicity (Cluster 4 in <xref ref-type="fig" rid="F1">Figure 1</xref>).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Effect marker</th>
<th align="left">Matrix</th>
<th align="left">Measurement method</th>
<th align="left">Comments/Recommended for human epidemiological studies (why, why not)</th>
<th align="left">References</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Creatinine</td>
<td align="left">Human serum/urine</td>
<td align="left">Kinetic alkaline picrate assay (Jaffe method)/ELISA</td>
<td align="left">Recommended and commonly used as a measure of kidney function</td>
<td align="left">
<xref ref-type="bibr" rid="B61">Lopez-Giacoman and Madero (2015)</xref>, <xref ref-type="bibr" rid="B108">Wasung et al. (2015)</xref>, <xref ref-type="bibr" rid="B114">Younes-Ibrahim and Younes-Ibrahim (2022)</xref>, <xref ref-type="bibr" rid="B118">Zhang X. et al. (2020)</xref>
</td>
</tr>
<tr>
<td align="left">&#x3b1;1-microglobulin (A1-MG)</td>
<td align="left">Human plasma/urine</td>
<td align="left">ELISA/nephelometric immunoassay</td>
<td align="left">Recommended as an early EBM of tubular disorders</td>
<td align="left">
<xref ref-type="bibr" rid="B80">Penders and Delanghe (2004)</xref>, <xref ref-type="bibr" rid="B71">Mustieles et al. (2018)</xref>
</td>
</tr>
<tr>
<td align="left">Retinol-binding protein 4 (RBP4)</td>
<td align="left">Human plasma/urine</td>
<td align="left">Mass-spectrometry/ELISA</td>
<td align="left">Recommended and is the most sensitive functional biomarker of proximal tubule</td>
<td align="left">
<xref ref-type="bibr" rid="B61">Lopez-Giacoman and Madero (2015)</xref>, <xref ref-type="bibr" rid="B57">Lapsley et al. (1998)</xref>, <xref ref-type="bibr" rid="B85">Ratajczyk et al. (2022)</xref>
</td>
</tr>
<tr>
<td align="left">Albumin</td>
<td align="left">Human urine</td>
<td align="left">Immunological assays/turbidimetric assays</td>
<td align="left">Recommended and provides a more specific and sensitive measure of changes in glomerular permeability than urinary total protein</td>
<td align="left">(<xref ref-type="bibr" rid="B46">Kidney Disease: Improving Global Outcomes KDIGO, 2013</xref>; <xref ref-type="bibr" rid="B114">Younes-Ibrahim and Younes-Ibrahim, 2022</xref>)</td>
</tr>
<tr>
<td align="left">N-acetyl-&#x3b2;-D glucosaminidase (NAG)</td>
<td align="left">Human serum/urine</td>
<td align="left">ELISA/Fluorometric assay</td>
<td align="left">Recommended and part of the FDA qualified biomarker panel for kidney tubular injury (<xref ref-type="bibr" rid="B102">U.S. Food and Drug Administration, 2020</xref>). Early EBM of tubular damage useful for human biomonitoring purposes</td>
<td align="left">
<xref ref-type="bibr" rid="B47">Kim et al. (2015)</xref>
</td>
</tr>
<tr>
<td align="left">KIM-1 (kidney injury molecule-1)</td>
<td align="left">Human serum/urine</td>
<td align="left">ELISA/laminar-flow dipstick assay</td>
<td align="left">Recommended and part of the FDA qualified biomarker panel for kidney tubular injury (<xref ref-type="bibr" rid="B102">U.S. Food and Drug Administration, 2020</xref>). Early biomarker for proximal tubular damage</td>
<td align="left">(<xref ref-type="bibr" rid="B61">Lopez-Giacoman and Madero, 2015</xref>; <xref ref-type="bibr" rid="B108">Wasung et al., 2015</xref>; <xref ref-type="bibr" rid="B113">Yin and Wang, 2016</xref>)</td>
</tr>
<tr>
<td align="left">Neutrophil gelatinase-associated lipocalin (NGAL)</td>
<td align="left">Human serum/plasma/urine</td>
<td align="left">ELISA/chemiluminescence immunoassay</td>
<td align="left">Recommended and part of the FDA qualified biomarker panel for kidney tubular injury (<xref ref-type="bibr" rid="B102">U.S. Food and Drug Administration, 2020</xref>). Marker for proximal and distal tubule disorders and an early marker for acute kidney injury as well as chronic kidney damage</td>
<td align="left">(<xref ref-type="bibr" rid="B61">Lopez-Giacoman and Madero, 2015</xref>; <xref ref-type="bibr" rid="B108">Wasung et al., 2015</xref>; <xref ref-type="bibr" rid="B114">Younes-Ibrahim and Younes-Ibrahim, 2022</xref>; <xref ref-type="bibr" rid="B101">Turgut et al., 2020</xref>)</td>
</tr>
<tr>
<td align="left">Cystatin C (CysC)</td>
<td align="left">Human serum/urine</td>
<td align="left">ELISA/nephelometric immunoassay/immunoturbidimetry</td>
<td align="left">Recommended and part of the FDA qualified biomarker panel for kidney tubular injury (<xref ref-type="bibr" rid="B102">U.S. Food and Drug Administration, 2020</xref>). Early marker of acute kidney injury and early kidney dysfunction, as well as a marker of chronic kidney disease</td>
<td align="left">(<xref ref-type="bibr" rid="B61">Lopez-Giacoman and Madero, 2015</xref>; <xref ref-type="bibr" rid="B108">Wasung et al., 2015</xref>; <xref ref-type="bibr" rid="B114">Younes-Ibrahim and Younes-Ibrahim, 2022</xref>; <xref ref-type="bibr" rid="B98">Spanaus et al., 2010</xref>)</td>
</tr>
<tr>
<td align="left">&#x3b2;2-microglobulin (B2-MG)</td>
<td align="left">Human plasma/serum/urine</td>
<td align="left">ELISA/nepherometric immunoassay</td>
<td align="left">Recommended as a marker of GFR and an early EBM of tubular damage useful for human biomonitoring purposes</td>
<td align="left">(<xref ref-type="bibr" rid="B61">Lopez-Giacoman and Madero, 2015</xref>; <xref ref-type="bibr" rid="B47">Kim et al., 2015</xref>)</td>
</tr>
<tr>
<td align="left">Clusterin (CLU)</td>
<td align="left">Human serum/urine</td>
<td align="left">ELISA</td>
<td align="left">Recommended and part of the FDA qualified biomarker panel for kidney tubular injury (<xref ref-type="bibr" rid="B102">U.S. Food and Drug Administration, 2020</xref>). Urinary level changes are specific to kidney injury</td>
<td align="left">(<xref ref-type="bibr" rid="B20">Dieterle et al., 2010</xref>; <xref ref-type="bibr" rid="B70">Musia&#x142; et al., 2020</xref>)</td>
</tr>
<tr>
<td align="left">Osteopontin (OPN)</td>
<td align="left">Human serum/urine</td>
<td align="left">ELISA</td>
<td align="left">Recommended and part of the FDA qualified biomarker panel for kidney tubular injury (<xref ref-type="bibr" rid="B102">U.S. Food and Drug Administration, 2020</xref>), an also suggested EBM of chronic kidney disease</td>
<td align="left">(<xref ref-type="bibr" rid="B19">de Borst and Carrero, 2023</xref>; <xref ref-type="bibr" rid="B96">Sinha et al., 2023</xref>)</td>
</tr>
<tr>
<td align="left">Fractional excretion of solutes (FeS)</td>
<td align="left">Human plasma and urine</td>
<td align="left">Measurement of solutes, such as sodium in both plasma and urine to calculate the fractional excretion</td>
<td align="left">Recommended as a simple EBM for tubular function, which could be related to both acute and chronic kidney injury</td>
<td align="left">
<xref ref-type="bibr" rid="B114">Younes-Ibrahim and Younes-Ibrahim (2022)</xref>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Abbreviations: A1-MG, &#x3b1;1-microglobulin; B2-MG, &#x3b2;2-microglobulin; <bold>CLU</bold>, clusterin; <bold>CysC</bold>, cystatin-C; <bold>ELISA</bold>, Enzyme-linked immunosorbent assay; EBM, effect biomarker; <bold>FDA</bold>, U.S., food and drug administration; <bold>FeS</bold>, fractional excretion of solutes; <bold>GFR</bold>, glomerular filtration rate; KIM-1, kidney injury molecule-1; <bold>NAG</bold>, N-acetyl-beta-d-glucosaminidase; <bold>NGAL</bold>, neutrophil gelatinase-associated lipocalin; <bold>OPN</bold>, osteopontin; <bold>RBP4</bold>, Retinol-binding protein 4.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Utilizing a panel of EBMs can provide a more comprehensive assessment of kidney damage and functional changes and help to identify early signs of kidney injury that may not be detectable with traditional markers alone. The U.S. Food and Drug Administration (FDA) has in 2018 assessed a panel of six markers for kidney tubular injury in clinical Phase 1 trials for drugs (<xref ref-type="bibr" rid="B102">U.S. Food and Drug Administration, 2020</xref>): clusterin (CLU), cystatin-C (CysC), kidney injury molecule-1 (KIM-1), N-acetyl-beta-d-glucosaminidase (NAG), neutrophil gelatinase-associated lipocalin (NGAL), and osteopontin (OPN). The U.S. FDA determined that the Composite Measure composed of these six urinary biomarkers was qualified as a &#x201c;safety composite biomarker panel to be used in conjunction with traditional measures to aid in the detection of kidney tubular injury in phase 1 trials in healthy volunteers when there is an a priori concern that a drug may cause renal tubular injury in humans&#x201d; (<xref ref-type="bibr" rid="B102">U.S. Food and Drug Administration, 2020</xref>).</p>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<label>4</label>
<title>Discussion</title>
<p>This study presents a comprehensive search for effect biomarkers (EBMs) for thyroid hormone-related AOPs, using the AOP framework to identify potential EBMs for use in epidemiological research. We identified potential EBMs for most of the included AOPs, some have already been used epidemiologically and are validated, whereas others are novel and need further development and validation before complete implementation in epidemiological studies. This illustrates both the translational potential of AOP-aligned EBMs and current gaps that require continued research.</p>
<p>The most promising EBM identified was BDNF for the AOPs on both &#x201c;Hippocampal alterations related to loss of cochlear function and decreased cognitive function&#x201d; (cluster 1) and &#x201c;Reduced levels of BDNF and function of the neurons related to impaired learning and memory&#x201d; (cluster 2) (<xref ref-type="fig" rid="F1">Figure 1</xref>). For the AOPs on &#x201c;Increase in hypertrophy, proliferation, and hyperplasia in thyroid follicular cells related to adenomas/carcinomas in thyroid follicular cells&#x201d; (<xref ref-type="fig" rid="F1">Figure 1</xref>, cluster 3), we did not identify any single EBM with high specificity, but IL-34, oxidative stress and gene expression of several genes were related to the key events (KEs) and adverse outcomes (AOs). For the AOP on kidney toxicity (<xref ref-type="fig" rid="F1">Figure 1</xref>, cluster 4), a panel of markers including Retinol-binding protein 4 (RBP4), KIM-1, CysC, NAG and NGAL was identified and has demonstrated utility in epidemiological studies as well as regulatory qualification.</p>
<sec id="s4-1">
<label>4.1</label>
<title>Interpretation of AOP-derived mechanistic clusters</title>
<sec id="s4-1-1">
<label>4.1.1</label>
<title>BDNF as effect biomarker for decreased cognitive function and impairment of learning and memory</title>
<p>The gene expression, protein level, and/or methylation status of the BDNF gene were identified as promising EBMs for both cluster 1 and 2 in the network of thyroid system related AOPs with mammalian evidence (<xref ref-type="fig" rid="F1">Figure 1</xref>). BDNF is a neurotrophins which plays a role in survival and differentiation of neurons during development and regulates synaptic transmission (excitatory and inhibitory) and activity-dependent plasticity in adulthood (<xref ref-type="bibr" rid="B62">Lu et al., 2014</xref>). The importance of BDNF in cognitive function and memory is well established (<xref ref-type="bibr" rid="B62">Lu et al., 2014</xref>). The two AOP clusters (<xref ref-type="bibr" rid="B3">Babi&#x107; et al., 2021</xref>; <xref ref-type="bibr" rid="B13">Burch, 2019</xref>) include three AOs (&#x201c;loss of cochlear function&#x201d;, &#x201c;decreased cognitive function&#x201d;, and &#x201c;impairment of learning and memory&#x201d;), and it is therefore not possible to distinguish between these AOs using BDNF as an EBM. However, the AOPs are indeed closely related as they share many of the early KEs and some of the AOs are very similar. Reduced level of BDNF is a specific KE for AOP <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/54">54</ext-link>, indicating a strong relevance in that context. The serum BDNF level has also been related to other neurological disorders and diseases such as attention deficit hyperactivity disorder, major depressive disorder, and autism spectrum disorder (<xref ref-type="bibr" rid="B91">Rodr&#xed;guez-Carrillo et al., 2023b</xref>). BDNF levels in peripheral blood are considered as an optimal estimate for the brain BDNF concentration, as it can cross the blood-brain barrier (<xref ref-type="bibr" rid="B54">Koven and Collins, 2014</xref>). It is also possible to measure in urine, where the fasting morning urine BDNF levels correlate positively with serum levels (<xref ref-type="bibr" rid="B76">Olivas-Martinez et al., 2023</xref>). However, urinary BDNF may not be the optimal EBM for cognitive function, as it has also been associated with bladder issues (overactive bladder, enuresis) and visceral chronic pain related conditions (<xref ref-type="bibr" rid="B91">Rodr&#xed;guez-Carrillo et al., 2023b</xref>). Overall, BDNF is a feasible and biologically relevant EBM, though further work is needed to confirm correspondence between peripheral and central levels in humans.</p>
</sec>
<sec id="s4-1-2">
<label>4.1.2</label>
<title>Effect biomarkers for thyroid cancer</title>
<p>Potential but more unspecific EBMs (IL-34, oxidative stress, etc.) were identified for proliferation and/or adenomas/carcinomas arising in follicular thyroid cells. The included AOPs (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/110">110</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/119">119</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/162">162</ext-link>) specifically address pathways with thyroid follicular cell hypertrophy and/or hyperplasia leading to follicular cell adenomas/carcinomas. The AOPs are based on rodent evidence and may be less relevant for humans, where the cancer risk associated with thyroid follicular hyperplasia (goiter) is low (<xref ref-type="bibr" rid="B42">Huisinga et al., 2020</xref>). This was pointed out by a panel of experts from different sectors, including pharmaceutical and agrochemical industries, contract research organizations, academic research laboratories, and regulatory affairs for drug, food, and chemical safety gathered by the European Society of Toxicologic Pathology in 2018 (<xref ref-type="bibr" rid="B42">Huisinga et al., 2020</xref>). However, thyroid cancer is considered a relevant AO of exposure to endocrine-disrupting chemicals (<xref ref-type="bibr" rid="B63">Macedo et al., 2023</xref>). In a recent review, <xref ref-type="bibr" rid="B63">Macedo et al. (2023)</xref> identified 30 human studies on endocrine-disrupting chemicals and thyroid cancer, of which approximately half reported significant associations.</p>
<p>The most accepted risk factor for developing human thyroid cancer in general is radiation exposure during childhood and in some cases a family history of thyroid cancer or iodine deficiency (<xref ref-type="bibr" rid="B42">Huisinga et al., 2020</xref>; <xref ref-type="bibr" rid="B55">Kruger et al., 2022</xref>). In addition, several types of endocrine disrupting chemicals have been associated to thyroid cancer in epidemiological studies, including dioxins, heavy metals, persistent organic pollutants, pesticides, and phthalates (<xref ref-type="bibr" rid="B63">Macedo et al., 2023</xref>; <xref ref-type="bibr" rid="B55">Kruger et al., 2022</xref>), underscoring the need for mechanistic understanding and tools tailored to human thyroid carcinogenesis. Thus, developing relevant AOPs for human thyroid cancers may be important to improve the understanding of mechanisms and effects of environmental exposures, as well as developing more relevant EBMs for epidemiological studies.</p>
<p>We also found one study (<xref ref-type="bibr" rid="B17">Costante and Meringolo, 2020</xref>) suggesting calcitonin as a good EBM for human C-cell cancer (accounts for 1%&#x2013;5% of all thyroid cancer cases (<xref ref-type="bibr" rid="B84">Ramos et al., 2025</xref>)). Calcitonin has the advantage that it can be measured in blood with commercially available immunoassays. Calcitonin is a hormone secreted by the C-cells of the thyroid gland. It plays a crucial role in regulating calcium levels in the blood by inhibiting bone resorption though reducing osteoclast activity and motility, as well as helps to protect against hypercalcemia (<xref ref-type="bibr" rid="B27">Felsenfeld and Levine, 2015</xref>). Serum calcitonin has not been linked with many other diseases and could be a relatively specific marker of C-cell thyroid cancer; however, some studies have found an association with bronchogenic cancer as well (<xref ref-type="bibr" rid="B94">Silva et al., 1976</xref>; <xref ref-type="bibr" rid="B95">Silva et al., 1979</xref>). Thus, while promising for C-cell neoplasia, calcitonin does not yet represent a broadly applicable thyroid tumour EBM.</p>
</sec>
<sec id="s4-1-3">
<label>4.1.3</label>
<title>Effect biomarker for kidney toxicity</title>
<p>EBMs of kidney function are well investigated, and several markers for different kidney diseases have been identified and validated. The present review did therefore not include a systematic search on EBMs related to AOP <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/128">128</ext-link> on kidney toxicity (<xref ref-type="fig" rid="F1">Figure 1</xref>, cluster 4), however, the most common EBMs from other reviews and the U.S. FDA were presented and described (<xref ref-type="bibr" rid="B115">Zare et al., 2021</xref>; <xref ref-type="bibr" rid="B90">Rodr&#xed;guez-Carrillo et al., 2023a</xref>; <xref ref-type="bibr" rid="B61">Lopez-Giacoman and Madero, 2015</xref>; <xref ref-type="bibr" rid="B26">Fassett et al., 2011</xref>; <xref ref-type="bibr" rid="B108">Wasung et al., 2015</xref>; <xref ref-type="bibr" rid="B46">Kidney Disease: Improving Global Outcomes KDIGO, 2013</xref>; <xref ref-type="bibr" rid="B102">U.S. Food and Drug Administration, 2020</xref>) (<xref ref-type="table" rid="T4">Table 4</xref>). The U.S. FDA approved a panel of six urinary EBMs for kidney tubular injury in clinical Phase 1 trials for drugs (<xref ref-type="bibr" rid="B102">U.S. Food and Drug Administration, 2020</xref>), the EBM panel may not only be relevant in clinical trials of drugs but could also be used in epidemiological studies. However, a validation of the sensitivity and specificity in epidemiological studies is needed. It is common to include a panel of EBMs in studies on chemical exposure and kidney toxicity (<xref ref-type="bibr" rid="B77">Ortega-Romero et al., 2023</xref>; <xref ref-type="bibr" rid="B81">P&#xe9;rez-Herrera et al., 2019</xref>; <xref ref-type="bibr" rid="B93">Saylor et al., 2022</xref>; <xref ref-type="bibr" rid="B104">Wallin et al., 2014</xref>). Although individual kidney EBMs are considered relatively specific for kidney injury, they reflect different biological processes and compartments within the kidney and therefore differ in sensitivity depending on exposure type, timing, and population characteristics. For instance, in a study on inorganic element exposure and kidney function in children (<xref ref-type="bibr" rid="B77">Ortega-Romero et al., 2023</xref>), Ortega-Romero et al. measured urinary levels of neutrophil gelatinase-associated lipocalin (NGAL), cystatin-C (CysC), osteopontin (OPN), clusterin (CLU), &#x3b1;1-microglobulin (A1-MG), and kidney injury molecule-1(KIM-1). They observed that the level of inorganic elements (fluoride, vanadium, arsenic, potassium, and sodium) correlated positively with some of the kidney injury EBMs (KIM-1, NGAL, &#x3b1;1-MG) (<xref ref-type="bibr" rid="B77">Ortega-Romero et al., 2023</xref>). This highlights the relevance of including a panel of EBMs, as they may have different sensitivity according to the setting and study population and the need for harmonized sampling and analytical protocols to support comparability across cohorts.</p>
<p>Rather than serving as stand-alone indicators, kidney EBMs are therefore best interpreted jointly, as a composite reflecting multiple dimensions of kidney stress and injury. Including multiple EBMs can also improve the comparability and reproducibility of results across studies, which is crucial for establishing robust scientific conclusions. Most of the suggested kidney EBMs have the advantage that they are measurable in urine samples, a non-invasive matrix that is highly recommended in human biomonitoring and epidemiological studies. However, the type of urine sample (spot, morning, or 24-h) and adjustment for urinary dilution (creatinine/specific gravity) is debated (<xref ref-type="bibr" rid="B40">Helmersson-Karlqvist et al., 2016</xref>). Even though spot samples are most convenient, they are variable, whereas morning samples are more stable. The use of 24-h samples in larger epidemiological studies is limited due to the inconvenience, logistical challenges, and lower compliance. Standardized recommendations are needed to harmonize collection and adjustment methods, enhancing study comparability and reliability.</p>
</sec>
</sec>
<sec id="s4-2">
<label>4.2</label>
<title>Application of AOP-based effect biomarkers in epidemiological studies of chemical exposures</title>
<p>Integrating AOPs into epidemiological research provides a mechanistic framework for linking chemical exposures (environmental pollutants or drugs) to health outcomes. Many widely used chemicals engage the molecular initiating events (MIEs) within the presented AOP network (<xref ref-type="fig" rid="F1">Figure 1</xref>). Here, we summarize some of the broadly prevalent exposures that can act through these events, with emphasis on three MIEs present in multiple AOPs: decreased thyroid hormone synthesis, inhibition of thyroid peroxidase (TPO), and inhibition of the sodium/iodide symporter (NIS).</p>
<p>Decreased thyroid hormone synthesis (MIE/KE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/277">277</ext-link>) is part of all four identified AOP clusters and included in six of the AOPs (<xref ref-type="fig" rid="F1">Figure 1</xref>; <xref ref-type="sec" rid="s11">Supplementary Tables S2a, b</xref>). It is one of the most essential events for THSD, and generally included as a KE, but for AOP <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/128">128</ext-link> it is given as the MIE. Deceased thyroid hormone synthesis cannot be measured directly but is often measured indirectly by TPO and NIS inhibition or by T4 serum levels.</p>
<p>Inhibition of TPO (MIE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/279">279</ext-link>) is the MIE of two included AOPs (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/42">42</ext-link> and <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/119">119</ext-link>) leading to decreased cognitive function and follicular cell adenomas and carcinomas, respectively. TPO is the enzyme responsible for the <italic>de novo</italic> synthesis of thyroid hormones, and its inhibition can disrupt systemic thyroid hormone homeostasis. High-throughput screening of over 1000 chemicals from the ToxCast library identified more than 300 putative TPO inhibitors, spanning pharmaceuticals, pesticides, industrial compounds, and consumer product ingredients (<xref ref-type="bibr" rid="B79">Paul et al., 2016</xref>). Among these, bisphenols and phthalates stand out due to their widespread use in plastics, food packaging, and personal care products, resulting in ubiquitous exposure across the general population (<xref ref-type="bibr" rid="B32">Gerofke et al., 2024</xref>; <xref ref-type="bibr" rid="B36">Govarts et al., 2023</xref>). Observational evidence suggests associations between exposure to these compounds and altered circulating thyroid hormone levels in humans (<xref ref-type="bibr" rid="B65">Milczarek-Banach et al., 2020</xref>; <xref ref-type="bibr" rid="B48">Kim et al., 2019</xref>). Given the prevalence of bisphenols and phthalates in everyday environments and their demonstrated potential to interfere with thyroid hormone synthesis via TPO inhibition, further epidemiological studies to validate the effects in humans are warranted. Focusing on the AOs of the included AOPs (decreased cognitive function and follicular cell adenomas/carcinomas) and aim to validate the identified EBMs.</p>
<p>Inhibition of NIS (MIE <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/events/424">424</ext-link>) leads to decreased cognitive function, impaired learning and memory, and follicular cell adenomas and carcinomas in the included AOP (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/54">54</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/110">110</ext-link>, and <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/134">134</ext-link>). NIS is essential for iodide uptake into thyroid follicular cells, the initial step for thyroid hormone synthesis. Recent high-throughput screening of over 1000 environmental chemicals identified 273 compounds with significant inhibition of NIS-mediated iodide uptake, highlighting the broad chemical space with potential to impair thyroid hormone synthesis (<xref ref-type="bibr" rid="B106">Wang et al., 2019</xref>). Several of the identified NIS inhibitors are common exposures in the general population, such as perchlorate, thiocyanate and nitrate that occur in drinking water, foods and tobacco smoke and have been associated with altered circulating thyroid hormone levels in population studies, with stronger effects in women of lower iodine status (<xref ref-type="bibr" rid="B8">Blount et al., 2006</xref>; <xref ref-type="bibr" rid="B9">Blount et al., 2007</xref>; <xref ref-type="bibr" rid="B12">Bruce et al., 2013</xref>; <xref ref-type="bibr" rid="B49">King et al., 2023</xref>). Several per- and polyfluoroalkyl substances (PFAS) have also been identified as potential NIS inhibitors in humans (<xref ref-type="bibr" rid="B99">Stoker et al., 2023</xref>). Population exposure to PFAS is well documented worldwide, including Europe, the United States, Asia and the Arctic (<xref ref-type="bibr" rid="B88">Richterov&#xe1; et al., 2023</xref>; <xref ref-type="bibr" rid="B11">Botelho et al., 2025</xref>; <xref ref-type="bibr" rid="B52">Kookana et al., 2025</xref>; <xref ref-type="bibr" rid="B10">Bonefeld-J&#xf8;rgensen et al., 2023</xref>), underscoring their epidemiologic relevance. Accordingly, epidemiological studies should evaluate associations between NIS inhibitors, such as perchlorate, thiocyanate, nitrate and PFAS, and health effects via AOP-aligned EBMs.</p>
</sec>
<sec id="s4-3">
<label>4.3</label>
<title>Developmental status, taxonomic applicability, and future perspectives and needs</title>
<p>The 11 AOPs included in this study are at various stages of development, highlighting the evolving nature of thyroid hormone-related research within the AOP framework. Two AOPs (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/42">42</ext-link> (cluster 1) and <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/54">54</ext-link> (cluster 2)) have received endorsement (<xref ref-type="sec" rid="s11">Supplementary Table S1</xref>), indicating a higher level of scientific consensus and validation, and provide a strong foundation for regulatory applications. The 9 AOPs (within cluster 1, 3, and 4 and AOP <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/402">402</ext-link> without any events) are under development with several requiring additional empirical evidence to strengthen key event relationships (KERs) and improve predictive utility for epidemiological studies (<xref ref-type="sec" rid="s11">Supplementary Table S1</xref>).</p>
<p>The developmental stage of the AOP and associated events directly affect the reliability of the identified EBMs. EBMs linked to well-developed AOPs and validated KEs are more reliable and applicable for human studies, while those associated with less-developed pathways require further validation before they can be widely used in population-based research. The variability in the developmental status of the AOPs highlights the need for continued research to enhance their robustness and regulatory acceptance. Future efforts should prioritize the validation of key events and measurement methods, ensuring their applicability for human biomonitoring and risk assessment purposes.</p>
<p>All AOPs with a mammal (human and rodent) applicability domain were included in the search of EBMs for epidemiological studies. Five AOPs (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/42">42</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/54">54</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/128">128</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/134">134</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/300">300</ext-link>) explicitly state human relevance, while six (<ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/8">8</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/110">110</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/119">119</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/152">152</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/162">162</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/402">402</ext-link>) had rat and/or mouse as the taxonomic applicability domain (<xref ref-type="sec" rid="s11">Supplementary Table S1</xref>). This inclusive approach ensures broader coverage, capturing a wide range of potential EBMs. Although animal models provide valuable mechanistic insights, human relevance must be validated, especially for AOPs such as those describing follicular cell adenomas and carcinomas, which may not be directly applicable to humans.</p>
<p>Thyroid disruption can profoundly affect human health, particularly neurodevelopment during critical windows such as the foetal and early postnatal periods. Despite the comprehensive nature of current AOPs for THSD, there may still be endpoints that are not fully covered (<xref ref-type="bibr" rid="B75">Noyes et al., 2019</xref>). Current AOPs primarily focus on well-characterized MIEs and KEs, but there are gaps in understanding the full spectrum of thyroid disruption effects (<xref ref-type="bibr" rid="B75">Noyes et al., 2019</xref>).</p>
<p>The use of EBMs in epidemiological studies offers significant advantages in THSD. EBMs can provide early indications of biological changes, facilitate timely intervention and improve risk assessment. They can also enhance the specificity and sensitivity of epidemiological studies, allowing for more accurate detection of thyroid-related health effects. Specific EBM for the thyroid hormone system, such as serum TSH and thyroxine (T4), are already well-established in clinical practice for monitoring thyroid function (<xref ref-type="bibr" rid="B18">D&#x27;Aurizio et al., 2023</xref>; <xref ref-type="bibr" rid="B103">Van Uytfanghe et al., 2023</xref>). However, novel EBMs, including the neurotoxicity marker (BDNF) and kidney markers (e.g., NGAL and KIM-1), have shown promise in linking thyroid disruption to more specific health outcomes. When individual EBMs exhibit limited specificity, their interpretative value in epidemiological studies can be strengthened through the combined use of multiple EBMs capturing complementary biological processes within an AOP. Such panel-based approaches can improve biological plausibility and robustness, particularly for complex outcomes where multiple mechanistically linked pathways contribute to the adverse outcome.</p>
<p>By integrating EBMs into the AOP framework, we can bridge the gap between mechanistic toxicology (<italic>in-vitro</italic> and animal studies) and epidemiological research, ultimately leading to better understanding and management of THSD&#x2019;s impact on human health. This approach not only enhances the predictive power of AOPs but also supports the development of targeted interventions and regulatory policies to mitigate the adverse effects of thyroid disruptors. However, validation of the EBMs is needed to ensure the validity of the results. Thus, while the use of BDNF and kidney markers seem to be implemented and validated in several epidemiological studies, further work is needed to validate other novel EBMs (<xref ref-type="table" rid="T1">Tables 1</xref>&#x2013;<xref ref-type="table" rid="T4">4</xref>).</p>
</sec>
<sec id="s4-4">
<label>4.4</label>
<title>Prioritization of effect biomarkers for epidemiological studies</title>
<p>To support practical implementation of AOP-aligned EBMs in human studies, we prioritized the identified EBMs according to their biological specificity, feasibility in commonly used human biological matrices, strength of human evidence, and remaining validation needs (<xref ref-type="table" rid="T5">Table 5</xref>). This provides a translational link between the mechanistic evidence captured in the AOPs and the requirements of population-based research and regulation.</p>
<table-wrap id="T5" position="float">
<label>TABLE 5</label>
<caption>
<p>Prioritization of AOP-aligned EBMs for human studies.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Biomarker/Panel</th>
<th align="left">AOP Cluster(s)</th>
<th align="left">Feasibility</th>
<th align="left">Specificity</th>
<th align="left">Human evidence</th>
<th align="left">Development need</th>
<th align="left">Priority</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">BDNF (serum/plasma)</td>
<td align="left">1&#x2013;2</td>
<td align="left">High</td>
<td align="left">Moderate</td>
<td align="left">Moderate</td>
<td align="left">Moderate</td>
<td align="left">High</td>
</tr>
<tr>
<td align="left">BDNF (urine)</td>
<td align="left">1&#x2013;2</td>
<td align="left">High</td>
<td align="left">Low&#x2013;Moderate</td>
<td align="left">Low&#x2013;Moderate</td>
<td align="left">High</td>
<td align="left">Moderate</td>
</tr>
<tr>
<td align="left">CLU, CysC, KIM-1, NAG, NGAL, OPN</td>
<td align="left">4</td>
<td align="left">High</td>
<td align="left">High</td>
<td align="left">High</td>
<td align="left">Low&#x2013;Moderate</td>
<td align="left">High</td>
</tr>
<tr>
<td align="left">Calcitonin</td>
<td align="left">3</td>
<td align="left">High</td>
<td align="left">Moderate&#x2013;High</td>
<td align="left">Low</td>
<td align="left">Moderate</td>
<td align="left">Moderate</td>
</tr>
<tr>
<td align="left">IL-34 &#x26; oxidative stress markers</td>
<td align="left">3</td>
<td align="left">Moderate</td>
<td align="left">Low&#x2013;Moderate</td>
<td align="left">Low</td>
<td align="left">High</td>
<td align="left">Low</td>
</tr>
<tr>
<td align="left">TSH, Free T4</td>
<td align="left">All</td>
<td align="left">High</td>
<td align="left">High</td>
<td align="left">High</td>
<td align="left">Low</td>
<td align="left">Context markers</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Abbreviations: AOP, adverse outcome pathway; BDNF, brain-derived neurotrophic factor; <bold>CLU</bold>, clusterin; <bold>CysC</bold>, cystatin-C; KIM-1, kidney injury molecule-1; <bold>NAG</bold>, N-acetyl-beta-d-glucosaminidase; <bold>NGAL</bold>, neutrophil gelatinase-associated lipocalin; <bold>OPN</bold>, osteopontin; IL-34, Interleukin 34; TSH, thyroid-stimulating hormone; <bold>T4</bold>, thyroxine.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Brain-derived neurotrophic factor (BDNF) and the kidney injury biomarkers (clusterin (CLU), cystatin-C (CysC), kidney injury molecule-1 (KIM-1), N-acetyl-beta-d-glucosaminidase (NAG), neutrophil gelatinase-associated lipocalin (NGAL), osteopontin (OPN)) emerged as high-priority candidates, as they are biologically relevant, measurable in minimally invasive matrices, and increasingly supported by human data. Calcitonin is promising for C-cell neoplasia but has limited epidemiological applicability due to the rarity of this outcome. Interleukin-34 (IL-34) and oxidative stress markers are mechanistically relevant but require further specificity and validation before broad use.</p>
<p>Overall, this prioritization highlights a set of EBMs that can be deployed in epidemiological research now, as well as those requiring targeted development to enable regulatory uptake and refinement of thyroid-related AOPs.</p>
</sec>
</sec>
<sec sec-type="conclusion" id="s5">
<label>5</label>
<title>Conclusion</title>
<p>In 10 thyroid hormone system related AOPs with mammalian relevance, we have searched for human epidemiological relevant EBMs. We identified brain-derived neurotrophic factor (BDNF) as the most promising EBM for the AOPs leading to decreased cognitive function and impaired learning and memory (AOP <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/42">42</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/54">54</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/134">134</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/152">152</ext-link>, and <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/300">300</ext-link>), while a panel of EBMs were identified for the kidney toxicity (AOP <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/128">128</ext-link>). These EBMs have already been implemented in several human epidemiological studies. However, specific EBMs for AOP <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/8">8</ext-link> on loss of cochlear function needed further work. The AOPs on thyroid follicular adenomas and carcinomas (AOP <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/110">110</ext-link>, <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/119">119</ext-link>, and <ext-link ext-link-type="uri" xlink:href="https://aopwiki.org/aops/162">162</ext-link>) had limited human relevance, but a subset of potential EBMs for other human thyroid cancers was identified. Overall, this study highlights the relevance and potential of using EBMs based on AOPs in epidemiological studies to enhance the understanding of the impact by THSD on human health. By aligning mechanistic toxicology with human observational data, AOP-based EBMs provide a structured and biologically grounded path toward strengthening causal inference, improving risk assessment, and informing regulatory decision-making. Continued refinement and validation of EBMs, particularly for pathways with limited human evidence, will further support their integration into public health research and chemical regulation.</p>
</sec>
</body>
<back>
<sec sec-type="author-contributions" id="s6">
<title>Author contributions</title>
<p>MW: Writing &#x2013; original draft, Writing &#x2013; review and editing. ML: Writing &#x2013; review and editing. AS: Writing &#x2013; review and editing. ER: Writing &#x2013; review and editing. DS: Writing &#x2013; review and editing. EB-J: Writing &#x2013; review and editing.</p>
</sec>
<sec sec-type="COI-statement" id="s8">
<title>Conflict of interest</title>
<p>The author(s) declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="ai-statement" id="s9">
<title>Generative AI statement</title>
<p>The author(s) declared that generative AI was not used in the creation of this manuscript.</p>
<p>Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="supplementary-material" id="s11">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fphar.2026.1760820/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fphar.2026.1760820/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Table2.xlsx" id="SM1" mimetype="application/xlsx" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Table4.pdf" id="SM2" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Table1.pdf" id="SM3" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Table3.pdf" id="SM4" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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<fn-group>
<fn fn-type="custom" custom-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/157627/overview">Henriqueta Louro</ext-link>, Instituto Nacional de Sa&#xfa;de Doutor Ricardo Jorge, Portugal</p>
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<fn fn-type="custom" custom-type="reviewed-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/18460/overview">Jan Willem Van Der Laan</ext-link>, Medicines Evaluation Board, Netherlands</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1557807/overview">Xuanzhen Pan</ext-link>, Beijing Normal University, China</p>
</fn>
</fn-group>
<sec id="s12">
<title>Glossary</title>
<def-list>
<def-item>
<term id="G1-fphar.2026.1760820">
<bold>18[F]FDG</bold>
</term>
<def>
<p>[18F]flurodeoxyglucose</p>
</def>
</def-item>
<def-item>
<term id="G2-fphar.2026.1760820">
<sup>
<bold>1</bold>
</sup>
<bold>H MRS</bold>
</term>
<def>
<p>Proton magnetic resonance spectroscopy</p>
</def>
</def-item>
<def-item>
<term id="G3-fphar.2026.1760820">
<bold>AMD</bold>
</term>
<def>
<p>peptidyl-glycine &#x3b1;-amidating monooxygenase</p>
</def>
</def-item>
<def-item>
<term id="G4-fphar.2026.1760820">
<bold>AMP</bold>
</term>
<def>
<p>Adenosine Monophosphate</p>
</def>
</def-item>
<def-item>
<term id="G5-fphar.2026.1760820">
<bold>AMPase</bold>
</term>
<def>
<p>Adenosine 5&#x2032;-monophosphatase</p>
</def>
</def-item>
<def-item>
<term id="G6-fphar.2026.1760820">
<bold>AO</bold>
</term>
<def>
<p>adverse outcome</p>
</def>
</def-item>
<def-item>
<term id="G7-fphar.2026.1760820">
<bold>AOP</bold>
</term>
<def>
<p>Adverse Outcome Pathway</p>
</def>
</def-item>
<def-item>
<term id="G8-fphar.2026.1760820">
<bold>APOE</bold>
</term>
<def>
<p>Apolipoprotein E</p>
</def>
</def-item>
<def-item>
<term id="G9-fphar.2026.1760820">
<bold>ARHGAP36</bold>
</term>
<def>
<p>Rho GTPase activating protein 36</p>
</def>
</def-item>
<def-item>
<term id="G10-fphar.2026.1760820">
<bold>ATL2</bold>
</term>
<def>
<p>Atlastin GTPase 2</p>
</def>
</def-item>
<def-item>
<term id="G11-fphar.2026.1760820">
<bold>B2-MG</bold>
</term>
<def>
<p>&#x3b2;2-microglobulin</p>
</def>
</def-item>
<def-item>
<term id="G12-fphar.2026.1760820">
<bold>BCAP31</bold>
</term>
<def>
<p>B-Cell Receptor Associated Protein 31</p>
</def>
</def-item>
<def-item>
<term id="G13-fphar.2026.1760820">
<bold>BDNF</bold>
</term>
<def>
<p>brain-derived neurotrophic factor</p>
</def>
</def-item>
<def-item>
<term id="G14-fphar.2026.1760820">
<bold>BMAL1</bold>
</term>
<def>
<p>Basic Helix-Loop-Helix ARNT Like 1</p>
</def>
</def-item>
<def-item>
<term id="G15-fphar.2026.1760820">
<bold>BMAL2</bold>
</term>
<def>
<p>Basic Helix-Loop-Helix ARNT Like 2</p>
</def>
</def-item>
<def-item>
<term id="G16-fphar.2026.1760820">
<bold>BRAF</bold>
</term>
<def>
<p>B-Raf proto-oncogene, serine/threonine kinase</p>
</def>
</def-item>
<def-item>
<term id="G17-fphar.2026.1760820">
<bold>CA1</bold>
</term>
<def>
<p>Cornu Ammonis 1</p>
</def>
</def-item>
<def-item>
<term id="G18-fphar.2026.1760820">
<bold>cdh9</bold>
</term>
<def>
<p>cadherin 9</p>
</def>
</def-item>
<def-item>
<term id="G19-fphar.2026.1760820">
<bold>CDR</bold>
</term>
<def>
<p>Clinical Dementia Rating</p>
</def>
</def-item>
<def-item>
<term id="G20-fphar.2026.1760820">
<bold>CHSTC</bold>
</term>
<def>
<p>carbohydrate sulfotransferase 12</p>
</def>
</def-item>
<def-item>
<term id="G21-fphar.2026.1760820">
<bold>circRNA</bold>
</term>
<def>
<p>Circular RNA</p>
</def>
</def-item>
<def-item>
<term id="G22-fphar.2026.1760820">
<bold>CLU</bold>
</term>
<def>
<p>Clusterin</p>
</def>
</def-item>
<def-item>
<term id="G23-fphar.2026.1760820">
<bold>Cr</bold>
</term>
<def>
<p>creatine</p>
</def>
</def-item>
<def-item>
<term id="G24-fphar.2026.1760820">
<bold>cry1</bold>
</term>
<def>
<p>cryptochrome circadian regulator 1</p>
</def>
</def-item>
<def-item>
<term id="G25-fphar.2026.1760820">
<bold>cry2</bold>
</term>
<def>
<p>cryptochrome circadian regulator 2</p>
</def>
</def-item>
<def-item>
<term id="G26-fphar.2026.1760820">
<bold>CysC</bold>
</term>
<def>
<p>Cystatin C</p>
</def>
</def-item>
<def-item>
<term id="G27-fphar.2026.1760820">
<bold>DCLK3</bold>
</term>
<def>
<p>doublecortin like kinase 3</p>
</def>
</def-item>
<def-item>
<term id="G28-fphar.2026.1760820">
<bold>DNA</bold>
</term>
<def>
<p>Deoxyribonucleic Acid</p>
</def>
</def-item>
<def-item>
<term id="G29-fphar.2026.1760820">
<bold>DUXAP8</bold>
</term>
<def>
<p>double homeobox A pseudogene 8</p>
</def>
</def-item>
<def-item>
<term id="G30-fphar.2026.1760820">
<bold>ELISA</bold>
</term>
<def>
<p>Enzyme-linked immunosorbent assay</p>
</def>
</def-item>
<def-item>
<term id="G31-fphar.2026.1760820">
<bold>EBM</bold>
</term>
<def>
<p>Effect biomarker</p>
</def>
</def-item>
<def-item>
<term id="G32-fphar.2026.1760820">
<bold>FDA</bold>
</term>
<def>
<p>U.S. Food and Drug Administration</p>
</def>
</def-item>
<def-item>
<term id="G33-fphar.2026.1760820">
<bold>FeS</bold>
</term>
<def>
<p>Fractional excretion of solutes</p>
</def>
</def-item>
<def-item>
<term id="G34-fphar.2026.1760820">
<bold>Fez1</bold>
</term>
<def>
<p>Fasciculation and Elongation Protein Zeta 1</p>
</def>
</def-item>
<def-item>
<term id="G35-fphar.2026.1760820">
<bold>Fez2</bold>
</term>
<def>
<p>Fasciculation and Elongation Protein Zeta 2</p>
</def>
</def-item>
<def-item>
<term id="G36-fphar.2026.1760820">
<bold>FURIN</bold>
</term>
<def>
<p>furin</p>
</def>
</def-item>
<def-item>
<term id="G37-fphar.2026.1760820">
<bold>GABA</bold>
</term>
<def>
<p>gamma-aminobutyric acid</p>
</def>
</def-item>
<def-item>
<term id="G38-fphar.2026.1760820">
<bold>GAS6</bold>
</term>
<def>
<p>Growth arrest-specific 6</p>
</def>
</def-item>
<def-item>
<term id="G39-fphar.2026.1760820">
<bold>GFR</bold>
</term>
<def>
<p>glomerular filtration rate</p>
</def>
</def-item>
<def-item>
<term id="G40-fphar.2026.1760820">
<bold>Glc</bold>
</term>
<def>
<p>Glucose</p>
</def>
</def-item>
<def-item>
<term id="G41-fphar.2026.1760820">
<bold>Glu</bold>
</term>
<def>
<p>glutamate</p>
</def>
</def-item>
<def-item>
<term id="G42-fphar.2026.1760820">
<bold>Glut8</bold>
</term>
<def>
<p>solute carrier family 2 member 12 (known as SLC2A12)</p>
</def>
</def-item>
<def-item>
<term id="G43-fphar.2026.1760820">
<bold>Glx</bold>
</term>
<def>
<p>glutamine</p>
</def>
</def-item>
<def-item>
<term id="G44-fphar.2026.1760820">
<bold>GPER1</bold>
</term>
<def>
<p>G protein-coupled estrogen receptor 1</p>
</def>
</def-item>
<def-item>
<term id="G45-fphar.2026.1760820">
<bold>GWAS</bold>
</term>
<def>
<p>Genome-wide association study</p>
</def>
</def-item>
<def-item>
<term id="G46-fphar.2026.1760820">
<bold>HBM</bold>
</term>
<def>
<p>human biomonitoring</p>
</def>
</def-item>
<def-item>
<term id="G47-fphar.2026.1760820">
<bold>HBM4EU</bold>
</term>
<def>
<p>Human biomonitoring for Europe</p>
</def>
</def-item>
<def-item>
<term id="G48-fphar.2026.1760820">
<bold>HTR6</bold>
</term>
<def>
<p>5-hydroxytryptamine receptor 6</p>
</def>
</def-item>
<def-item>
<term id="G49-fphar.2026.1760820">
<bold>HXK2</bold>
</term>
<def>
<p>hexokinase 2</p>
</def>
</def-item>
<def-item>
<term id="G50-fphar.2026.1760820">
<bold>IL-34</bold>
</term>
<def>
<p>Interleukin 34</p>
</def>
</def-item>
<def-item>
<term id="G51-fphar.2026.1760820">
<bold>Insr</bold>
</term>
<def>
<p>Insulin receptor</p>
</def>
</def-item>
<def-item>
<term id="G52-fphar.2026.1760820">
<bold>ITGA9</bold>
</term>
<def>
<p>integrin subunit alpha 9</p>
</def>
</def-item>
<def-item>
<term id="G53-fphar.2026.1760820">
<bold>KCC2</bold>
</term>
<def>
<p>Potassium Chloride Cotransporter 2</p>
</def>
</def-item>
<def-item>
<term id="G54-fphar.2026.1760820">
<bold>KE</bold>
</term>
<def>
<p>key event</p>
</def>
</def-item>
<def-item>
<term id="G55-fphar.2026.1760820">
<bold>KER</bold>
</term>
<def>
<p>key event relationship</p>
</def>
</def-item>
<def-item>
<term id="G56-fphar.2026.1760820">
<bold>KIM-1</bold>
</term>
<def>
<p>kidney injury molecule-1</p>
</def>
</def-item>
<def-item>
<term id="G57-fphar.2026.1760820">
<bold>KMT2A</bold>
</term>
<def>
<p>Lysine Methyltransferase 2A</p>
</def>
</def-item>
<def-item>
<term id="G58-fphar.2026.1760820">
<bold>MCHR1</bold>
</term>
<def>
<p>melanin concentrating hormone receptor 1</p>
</def>
</def-item>
<def-item>
<term id="G59-fphar.2026.1760820">
<bold>MIE</bold>
</term>
<def>
<p>molecular initiating event</p>
</def>
</def-item>
<def-item>
<term id="G60-fphar.2026.1760820">
<bold>miRNA</bold>
</term>
<def>
<p>micro RNA</p>
</def>
</def-item>
<def-item>
<term id="G61-fphar.2026.1760820">
<bold>MMP-2</bold>
</term>
<def>
<p>matrix metalloproteinase- 2</p>
</def>
</def-item>
<def-item>
<term id="G62-fphar.2026.1760820">
<bold>MMP9</bold>
</term>
<def>
<p>metalloproteinase-9</p>
</def>
</def-item>
<def-item>
<term id="G63-fphar.2026.1760820">
<bold>MMSE</bold>
</term>
<def>
<p>Mini Mental Status Examination</p>
</def>
</def-item>
<def-item>
<term id="G64-fphar.2026.1760820">
<bold>MRI</bold>
</term>
<def>
<p>Magnetic resonance imaging</p>
</def>
</def-item>
<def-item>
<term id="G65-fphar.2026.1760820">
<bold>mRNA</bold>
</term>
<def>
<p>messenger ribonucleic Acid</p>
</def>
</def-item>
<def-item>
<term id="G66-fphar.2026.1760820">
<bold>NAG</bold>
</term>
<def>
<p>N-acetyl-&#x3b2;-D glucosaminidase</p>
</def>
</def-item>
<def-item>
<term id="G67-fphar.2026.1760820">
<bold>NCF-1</bold>
</term>
<def>
<p>neutrophil cytosol factor 1</p>
</def>
</def-item>
<def-item>
<term id="G68-fphar.2026.1760820">
<bold>Nfkb</bold>
</term>
<def>
<p>nuclear factor kappa B</p>
</def>
</def-item>
<def-item>
<term id="G69-fphar.2026.1760820">
<bold>NGAL</bold>
</term>
<def>
<p>Neutrophil gelatinase-associated lipocalin</p>
</def>
</def-item>
<def-item>
<term id="G70-fphar.2026.1760820">
<bold>NT5E</bold>
</term>
<def>
<p>5&#x2032;-nucleotidase ecto</p>
</def>
</def-item>
<def-item>
<term id="G71-fphar.2026.1760820">
<bold>OPN</bold>
</term>
<def>
<p>Osteopontin</p>
</def>
</def-item>
<def-item>
<term id="G72-fphar.2026.1760820">
<bold>PARC</bold>
</term>
<def>
<p>Partnership for the Assessment of Risks from Chemicals</p>
</def>
</def-item>
<def-item>
<term id="G73-fphar.2026.1760820">
<bold>Parp1</bold>
</term>
<def>
<p>poly(ADP-ribose) polymerase 1</p>
</def>
</def-item>
<def-item>
<term id="G74-fphar.2026.1760820">
<bold>PCr</bold>
</term>
<def>
<p>phosphocreatine</p>
</def>
</def-item>
<def-item>
<term id="G75-fphar.2026.1760820">
<bold>PCR</bold>
</term>
<def>
<p>Polymerase chain reaction</p>
</def>
</def-item>
<def-item>
<term id="G76-fphar.2026.1760820">
<bold>Per1</bold>
</term>
<def>
<p>period circadian regulator 1</p>
</def>
</def-item>
<def-item>
<term id="G77-fphar.2026.1760820">
<bold>Per2</bold>
</term>
<def>
<p>period circadian regulator 2</p>
</def>
</def-item>
<def-item>
<term id="G78-fphar.2026.1760820">
<bold>PET</bold>
</term>
<def>
<p>positron emission tomography</p>
</def>
</def-item>
<def-item>
<term id="G79-fphar.2026.1760820">
<bold>PFAS</bold>
</term>
<def>
<p>Per- and polyfluoroalkyl substance</p>
</def>
</def-item>
<def-item>
<term id="G80-fphar.2026.1760820">
<bold>qPCR</bold>
</term>
<def>
<p>Quantitative Polymerase chain reaction</p>
</def>
</def-item>
<def-item>
<term id="G81-fphar.2026.1760820">
<bold>QPCTL</bold>
</term>
<def>
<p>Glutaminyl-Peptide Cyclotransferase Like</p>
</def>
</def-item>
<def-item>
<term id="G82-fphar.2026.1760820">
<bold>RAS</bold>
</term>
<def>
<p>receptor tyrosine kinase</p>
</def>
</def-item>
<def-item>
<term id="G83-fphar.2026.1760820">
<bold>RBP4</bold>
</term>
<def>
<p>Retinol-binding protein 4</p>
</def>
</def-item>
<def-item>
<term id="G84-fphar.2026.1760820">
<bold>Rev-erb&#x3b1;</bold>
</term>
<def>
<p>nuclear receptor subfamily 1 group D member 1</p>
</def>
</def-item>
<def-item>
<term id="G85-fphar.2026.1760820">
<bold>RNA</bold>
</term>
<def>
<p>Ribonucleic Acid</p>
</def>
</def-item>
<def-item>
<term id="G86-fphar.2026.1760820">
<bold>rT3</bold>
</term>
<def>
<p>Reverse Triiodothyronine</p>
</def>
</def-item>
<def-item>
<term id="G87-fphar.2026.1760820">
<bold>S100A12</bold>
</term>
<def>
<p>S100 calcium binding protein A12</p>
</def>
</def-item>
<def-item>
<term id="G88-fphar.2026.1760820">
<bold>S100B</bold>
</term>
<def>
<p>S100 calcium-binding protein B</p>
</def>
</def-item>
<def-item>
<term id="G89-fphar.2026.1760820">
<bold>SNIPE</bold>
</term>
<def>
<p>Scoring by Nonlocal Image Patch Estimator</p>
</def>
</def-item>
<def-item>
<term id="G90-fphar.2026.1760820">
<bold>SPD</bold>
</term>
<def>
<p>Protein levels of protein D</p>
</def>
</def-item>
<def-item>
<term id="G91-fphar.2026.1760820">
<bold>T3</bold>
</term>
<def>
<p>triiodthyronin</p>
</def>
</def-item>
<def-item>
<term id="G92-fphar.2026.1760820">
<bold>T4</bold>
</term>
<def>
<p>thyroxine</p>
</def>
</def-item>
<def-item>
<term id="G93-fphar.2026.1760820">
<bold>TAS</bold>
</term>
<def>
<p>Total antioxidant status</p>
</def>
</def-item>
<def-item>
<term id="G94-fphar.2026.1760820">
<bold>Tau</bold>
</term>
<def>
<p>taurine</p>
</def>
</def-item>
<def-item>
<term id="G95-fphar.2026.1760820">
<bold>THSD</bold>
</term>
<def>
<p>Thyroid hormone system disruption</p>
</def>
</def-item>
<def-item>
<term id="G96-fphar.2026.1760820">
<bold>TOS</bold>
</term>
<def>
<p>Total oxidant status</p>
</def>
</def-item>
<def-item>
<term id="G97-fphar.2026.1760820">
<bold>TPO</bold>
</term>
<def>
<p>thyroid peroxidase</p>
</def>
</def-item>
<def-item>
<term id="G98-fphar.2026.1760820">
<bold>TrkB</bold>
</term>
<def>
<p>Tropomyosin receptor kinase B</p>
</def>
</def-item>
<def-item>
<term id="G99-fphar.2026.1760820">
<bold>Trpc6</bold>
</term>
<def>
<p>transient receptor potential cation channel subfamily C member 6</p>
</def>
</def-item>
<def-item>
<term id="G100-fphar.2026.1760820">
<bold>TSH</bold>
</term>
<def>
<p>thyroid-stimulating hormone</p>
</def>
</def-item>
<def-item>
<term id="G101-fphar.2026.1760820">
<bold>TSP1</bold>
</term>
<def>
<p>tumor suppressor region 1</p>
</def>
</def-item>
<def-item>
<term id="G102-fphar.2026.1760820">
<bold>t-tau</bold>
</term>
<def>
<p>total taurine</p>
</def>
</def-item>
<def-item>
<term id="G103-fphar.2026.1760820">
<bold>TWAS</bold>
</term>
<def>
<p>transcriptome-wide association study</p>
</def>
</def-item>
<def-item>
<term id="G104-fphar.2026.1760820">
<bold>VEGF</bold>
</term>
<def>
<p>vascular endothelial growth factor</p>
</def>
</def-item>
<def-item>
<term id="G105-fphar.2026.1760820">
<bold>VEGFR1</bold>
</term>
<def>
<p>Vascular endothelial growth factor receptor 1</p>
</def>
</def-item>
<def-item>
<term id="G106-fphar.2026.1760820">
<bold>Vit D</bold>
</term>
<def>
<p>25-hydroxyvitamin-D (25(OH)D)</p>
</def>
</def-item>
<def-item>
<term id="G107-fphar.2026.1760820">
<bold>WMS</bold>
</term>
<def>
<p>Wechsler Memory Scale</p>
</def>
</def-item>
</def-list>
</sec>
</back>
</article>