<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article article-type="research-article" dtd-version="2.3" xml:lang="EN" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Pharmacol.</journal-id>
<journal-title>Frontiers in Pharmacology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Pharmacol.</abbrev-journal-title>
<issn pub-type="epub">1663-9812</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1397203</article-id>
<article-id pub-id-type="doi">10.3389/fphar.2024.1397203</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Pharmacology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Discovery of key biomarkers in tourette syndrome by network pharmacology</article-title>
<alt-title alt-title-type="left-running-head">Zhao and Bai</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fphar.2024.1397203">10.3389/fphar.2024.1397203</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Zhao</surname>
<given-names>Jiali</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2675831/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Bai</surname>
<given-names>Xiaohong</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2825727/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Liaoning University of Traditional Chinese Medicine</institution>, <addr-line>Shenyang</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Harbin Hospital of Traditional Chinese Medicine</institution>, <addr-line>Harbin</addr-line>, <addr-line>Heilongjiang</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Affiliated Hospital of Liaoning University of Traditional Chinese</institution> <institution>Medicine</institution>, <addr-line>Shenyang</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/685112/overview">Sajjad Gharaghani</ext-link>, University of Tehran, Iran</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2225360/overview">Wenqiang Cui</ext-link>, Chinese Academy of Sciences (CAS), China</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/31014/overview">F&#xe9;lix Javier Jim&#xe9;nez-Jim&#xe9;nez</ext-link>, Hospital Universitario del Sureste, Spain</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Xiaohong Bai, <email>zhaowanhansci@88.com</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>10</day>
<month>09</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1397203</elocation-id>
<history>
<date date-type="received">
<day>07</day>
<month>03</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>14</day>
<month>08</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Zhao and Bai.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Zhao and Bai</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Background</title>
<p>Yangxue Xifeng Decoction (YXD) has been utilized in clinical settings for the treatment of Tourette Syndrome (TS). However, the action mechanism of YXD needs further research.</p>
</sec>
<sec>
<title>Methods</title>
<p>The ingredients and targets of YXD were identified via database searches and then constructed an active ingredient-target network using Cytoscape. Pathway enrichment analysis was performed via Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). The core genes were determined by LASSO regression and SVM algorithm. Additionally, we analyzed the immune infiltration. The signaling pathways associated with core genes were investigated through KEGG and GO. We predicted the transcription factors using &#x201c;RcisTarge&#x201d;.</p>
</sec>
<sec>
<title>Results</title>
<p>127 active ingredients of YXD and 255 targets were obtained. TNF and the IL-17 signaling pathway were the main pathways. <italic>OPRM1</italic> and <italic>VIM</italic> were screened out as core genes, which were associated with the immune infiltration. The signaling pathways involved in <italic>OPRM1</italic> and <italic>VIM</italic> were enriched. Furthermore, remarkable correlation was found between <italic>OPRM1</italic> and <italic>VIM</italic> levels and other TS-related genes such as <italic>MAPT</italic> and <italic>MAPT</italic>.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>
<italic>OPRM1</italic> and <italic>MAPT,</italic> and the signaling pathways are associated with TS. YXD exerts its therapeutic TS through multi-component and multi-targets including immune infiltration.</p>
</sec>
</abstract>
<kwd-group>
<kwd>tourette syndrome</kwd>
<kwd>Yangxue Xifeng decoction</kwd>
<kwd>network pharmacology</kwd>
<kwd>immune infiltration</kwd>
<kwd>LASSO regression and SVM algorithm</kwd>
</kwd-group>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Experimental Pharmacology and Drug Discovery</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>Tourette syndrome (TS), also known as tourette disorder, is a neurodevelopmental condition characterized by persistent vocal and motor tics that cause distress and impair daily functioning. (<xref ref-type="bibr" rid="B17">First et al., 2012</xref>). Estimates suggest that TS affects between 0.1% and 1% of children. (<xref ref-type="bibr" rid="B36">Nilles et al., 2023</xref>; <xref ref-type="bibr" rid="B14">Efron and Dale, 2018</xref>). The presence of psychiatric comorbidities, such as attention deficit-hyperactivity disorder (ADHD) and obsessive-compulsive disorder (OCD), can have a more significant impact than the tics themselves. (<xref ref-type="bibr" rid="B12">Eapen et al., 2016a</xref>; <xref ref-type="bibr" rid="B38">Ogundele and Ayyash, 2018</xref>; <xref ref-type="bibr" rid="B5">Cavanna et al., 2020</xref>). Research indicates that a large proportion, up to 85%, of children with TS also experience other neurodevelopmental or mental health conditions. (<xref ref-type="bibr" rid="B25">Kattner, 2022</xref>). Additionally, individuals with TS commonly exhibit symptoms of anxiety, behavior problems, learning difficulties, sleep disturbances, impaired social interaction, and sensory processing challenges. (<xref ref-type="bibr" rid="B36">Nilles et al., 2023</xref>; <xref ref-type="bibr" rid="B30">Lin et al., 2022</xref>; <xref ref-type="bibr" rid="B45">Set and Warner, 2021</xref>). Numerous studies consistently show that both children and adults with TS have a reduced quality of life. (<xref ref-type="bibr" rid="B13">Eapen et al., 2016b</xref>; <xref ref-type="bibr" rid="B19">Gilbert et al., 2024</xref>).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Genes information.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">
<break/>Full official gene name</th>
<th align="left">Description</th>
<th align="left">Gene ID number</th>
<th align="left">MIM (Mendelian inheritance in Man) number</th>
<th align="left">Chromosome location</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">OPRM1</td>
<td align="left">opioid receptor mu 1 [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">4,988</td>
<td align="left">600018</td>
<td align="left">Chromosome 6, NC_000006.12 (154010496.154246867)</td>
</tr>
<tr>
<td align="left">VIM</td>
<td align="left">vimentin [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">7,431</td>
<td align="left">193060</td>
<td align="left">Chromosome 10, NC_000010.11 (17228241.17237593)</td>
</tr>
<tr>
<td align="left">MAPT</td>
<td align="left">crotubule associated protein tau [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">4,137</td>
<td align="left">157140</td>
<td align="left">Chromosome 17, NC_000017.11 (45894554.46028334)</td>
</tr>
<tr>
<td align="left">MAPK1</td>
<td align="left">mitogen-activated protein kinase 1 [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">5,594</td>
<td align="left">176948</td>
<td align="left">Chromosome 22, NC_000022.11 (21759657.21867680, complement)</td>
</tr>
<tr>
<td align="left">CIC</td>
<td align="left">capicua transcriptional repressor [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">23152</td>
<td align="left">612082</td>
<td align="left">Chromosome 19, NC_000019.10 (42268530.42295796)</td>
</tr>
<tr>
<td align="left">DLGAP3</td>
<td align="left">DLG associated protein 3 [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">8,512</td>
<td align="left">611413</td>
<td align="left">Chromosome 1, NC_000001.11 (34865436.34929650, complement)</td>
</tr>
<tr>
<td align="left">KIR2DL3</td>
<td align="left">killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 3 [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">3,804</td>
<td align="left">604938</td>
<td align="left">Chromosome 19, NC_000019.10 (54738513.54753052)</td>
</tr>
<tr>
<td align="left">KIR2DL1</td>
<td align="left">killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 1 [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">3,802</td>
<td align="left">604936</td>
<td align="left">Chromosome 19, NC_000019.10 (54769793.54784322)</td>
</tr>
<tr>
<td align="left">TNFRSF13B</td>
<td align="left">TNF receptor superfamily member 13B [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">23495</td>
<td align="left">604907</td>
<td align="left">Chromosome 17, NC_000017.11 (16939081.16972118, complement)</td>
</tr>
<tr>
<td align="left">TNFSF9</td>
<td align="left">TNF superfamily member 9 [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">8,744</td>
<td align="left">606182</td>
<td align="left">Chromosome 19, NC_000019.10 (6531026.6535924)</td>
</tr>
<tr>
<td align="left">CD276</td>
<td align="left">CD276 molecule [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">80381</td>
<td align="left">605715</td>
<td align="left">Chromosome 15, NC_000015.10 (73683944.73714514)</td>
</tr>
<tr>
<td align="left">HLA-DPA1</td>
<td align="left">major histocompatibility complex, class II, DP alpha 1 [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">3,113</td>
<td align="left">142880</td>
<td align="left">Chromosome 6, NC_000006.12 (33064569.33080748, complement)</td>
</tr>
<tr>
<td align="left">CXCR4</td>
<td align="left">C-X-C motif chemokine receptor 4 [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">7,852</td>
<td align="left">162643</td>
<td align="left">Chromosome 2, NC_000002.12 (136114349.136118149, complement)</td>
</tr>
<tr>
<td align="left">CXCR3</td>
<td align="left">C-X-C motif chemokine receptor 3 [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">2,833</td>
<td align="left">300574</td>
<td align="left">Chromosome X, NC_000023.11 (71615919.71618511, complement)</td>
</tr>
<tr>
<td align="left">NAALAD2</td>
<td align="left">N-acetylated alpha-linked acidic dipeptidase 2 [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">10003</td>
<td align="left">611636</td>
<td align="left">Chromosome 11, NC_000011.10 (90131699.90192894)</td>
</tr>
<tr>
<td align="left">FLT3</td>
<td align="left">fms related receptor tyrosine kinase 3 [<italic>Homo sapiens</italic> (human)]</td>
<td align="left">2,322</td>
<td align="left">136351</td>
<td align="left">Chromosome 13, NC_000013.11 (28003274.28100576, complement)</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>The pathophysiology is of TS remains unclear, including various defects in neurobiology caused by inherited genetics, surrounding environment, infections, and psychosocial elements. (<xref ref-type="bibr" rid="B25">Kattner, 2022</xref>; <xref ref-type="bibr" rid="B30">Lin et al., 2022</xref>; <xref ref-type="bibr" rid="B24">Johnson et al., 2023</xref>; <xref ref-type="bibr" rid="B2">Billnitzer and Jankovic, 2020</xref>). Abnormalities in the pathways that connect the cerebral cortex and basal ganglia have been identified as causing neuronal disinhibition in the motor and limbic systems. (<xref ref-type="bibr" rid="B5">Cavanna et al., 2020</xref>; <xref ref-type="bibr" rid="B42">Ramkiran et al., 2019</xref>). Evidence also suggests that the sensory limbic and executive corticostriatal loops play a role in this process. (<xref ref-type="bibr" rid="B16">Felling and Singer, 2011</xref>). In terms of biochemistry, multiple neurochemical pathways are implicated, involving imbalances in amine neurotransmitters and other signaling molecules such as endogenous opioid peptides. (<xref ref-type="bibr" rid="B47">Szejko et al., 2022</xref>). Besides, TS appears to have a strong genetic foundation, with an inheritance pattern most likely controlled by multiple genes. (<xref ref-type="bibr" rid="B30">Lin et al., 2022</xref>; <xref ref-type="bibr" rid="B11">Dom&#xe8;nech et al., 2021</xref>). The diagnosis and clinical management of the disease are significantly influenced by the immune microenvironment which consists of immune cells, inflammatory and growth factors, extracellular matrix and etc. (<xref ref-type="bibr" rid="B49">Tsetsos et al., 2024</xref>) In some cases, abnormalities in immune activation can lead to inflammation, which appears to play a pathogenic role. (<xref ref-type="bibr" rid="B30">Lin et al., 2022</xref>; <xref ref-type="bibr" rid="B34">Martino et al., 2020</xref>).</p>
<p>The treatment approach for Tourette Syndrome (TS) varies depending on the type and severity of the injury sustained by the patient. (<xref ref-type="bibr" rid="B22">Hsu et al., 2021a</xref>; <xref ref-type="bibr" rid="B28">Leckman et al., 2005</xref>). Acceptance, understanding, education and are typically enough for most patients. However, psychological or pharmacological treatments might become crucial in more serious situations. (<xref ref-type="bibr" rid="B40">Pringsheim et al., 2019a</xref>; <xref ref-type="bibr" rid="B41">Pringsheim et al., 2019b</xref>). It is important to note that medication is still the main treatment of TS. (<xref ref-type="bibr" rid="B44">Seideman Mf Fau - Seideman and Seideman, 2020</xref>). However, current drugs for TS are primarily psychiatric medications, which often have significant side effects. (<xref ref-type="bibr" rid="B6">Chen et al., 2020</xref>). The US Food and Drug Administration (FDA) has approved some medications to manage tics in TS, all of which are antipsychotics that act on the D2 receptor. Despite their effectiveness, both first- and second-generation D2 receptor antagonists are associated with side effects such as somnolence, dysphoria, and the risk of drug-induced movement disorders like dystonia, akathisia, withdrawal dyskinesias, and rarely, tardive dyskinesia. (<xref ref-type="bibr" rid="B41">Pringsheim et al., 2019b</xref>; <xref ref-type="bibr" rid="B4">Buse et al., 2013</xref>). Moreover, the use of D2 receptor antagonists in TS is limited due to the risk of increased weight gain, elevated prolactin, dyslipidemia, and hyperglycemia, including diabetes. However, one of the main challenges in developing drugs for TS is the lack of clear therapeutic targets for its pathogenesis.</p>
<p>Traditional Chinese Medicine (TCM) offers potential alternative treatments for TS. Yangxue Xifeng Decoction (YXD), a herbal formula composed of 10 herbs, has been shown to significantly improve clinical symptoms in TS patients in China. Nevertheless, the therapeutic targets and mechanisms of Chinese medicines (CM), including YXD, are not yet clear due to the complexity of their components. Network pharmacology presents a novel method for examining the correlation between medications and illnesses. By combining multidirectional pharmaceutical biology, systems biology, computer science, and bioinformatics, network pharmacology allows for the systematic investigation of molecular regulatory mechanisms. (<xref ref-type="bibr" rid="B53">Zhou et al., 2020</xref>). The multi-target and multi-drug model enables the construction of more efficient networks, which helps in understanding the complex composition and multiple therapeutic targets of CM formulas. (<xref ref-type="bibr" rid="B33">Luo et al., 2020</xref>; <xref ref-type="bibr" rid="B46">Shang et al., 2023</xref>). Network pharmacology offers an evidence-based approach for researches of clinical efficacy and quality control on CM formulas. (<xref ref-type="bibr" rid="B33">Luo et al., 2020</xref>; <xref ref-type="bibr" rid="B53">Zhou et al., 2020</xref>; <xref ref-type="bibr" rid="B37">Niu et al., 2022</xref>).</p>
<p>In present study, the material basis and action mechanism of YXD for TS, and the potential biomarkers for TS were investigated. Various network pharmacology methods were performed to predict the Targets and Pathways of YXD for TS. SVM algorithm analyses and LASSO regression were performed for identification of TS core genes. Additionally, the relationship between immune cells and central genes, signaling pathways, key genes transcriptional regulation, and genes that synergize with key genes were analyzed.</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>2 Materials and methods</title>
<sec id="s2-1">
<title>2.1 Predicting the targets and pathways of YXD for TS</title>
<p>The medicinal ingredients of all the herbs involved in TXD were obtained based on TCMSP database. The YXD ingredients were screened out based on pharmacokinetic information including drug-likeness (DL) and oral bioavailability (OB). DL was evaluated using Lipinski&#x2019;s Rule of Five, with compounds meeting at least 4 criteria considered to have good drug-likeness, and OB was assessed using the threshold of &#x2265;30%. These parameters were chosen as they are widely accepted indicators of a compound&#x2019;s potential as an orally active drug in humans. (<xref ref-type="bibr" rid="B31">Liu et al., 2021</xref>). The TS-related targets were looked up based on OMIM, Genecard, and GEO databases. The pathological targets of TS, and the possible drug targets of YXD ingredients were integrated by Venn diagrams, and the intersecting proteins were used as the potential target proteins of YXD for the treatment of TS. Herb-compound-target network diagrams were visualized by using Cytoscape.</p>
</sec>
<sec id="s2-2">
<title>2.2 Data acquisition from GEO database</title>
<p>The data of gene expression from the TS dataset GSE30470 was downloaded from the Gene Expression Omnibus (GEO) database with the annotation platform GPL570, containing control (n &#x3d; 13) and disease (n &#x3d; 8) groups, from which 255&#xa0;TS-related target proteins were screened as biomarkers.</p>
</sec>
<sec id="s2-3">
<title>2.3 LASSO and SVM-RFE model</title>
<p>TS diagnostic markers were categorized using SVM algorithms and LASSO logistic regression. We performed LASSO analysis using the &#x201c;glmnet&#x201d; software package. In addition, the selected biomarkers were analyzed for TS diagnosis by using the &#x201c;e1071&#x201d; software package to build a SVM model.</p>
</sec>
<sec id="s2-4">
<title>2.4 Analysis of immune infiltration</title>
<p>In this study, we utilized the ssGSEA algorithm to assess the impact of gene expression on immune cell infiltration levels within each sample. Furthermore, the corrplot package was employed for examining the relationships between different immune cell types and conducting a comprehensive analysis of immune cell interactions. Additionally, Pearson correlation analysis was carried out to investigate the association between gene expression levels and immune cell content.</p>
</sec>
<sec id="s2-5">
<title>2.5 Gene set enrichment analysis</title>
<p>To conduct a comprehensive plagiarism check, we utilize the Gene Set Enrichment Analysis (GSEA) technique. Our analysis entails the utilization of a predefined gene set, in which genes are organized according to their degree of differential expression across two distinct group. The criteria for selecting these sets is FDR &#x3c;0.05 and containing at least 10 genes from our input list. The primary objective is to determine if the predefined set of genes exhibits enrichment either at the upper or lower strata of this ranked list. This investigation delves into the molecular mechanisms underlying the core genes within the two patient groups. This study explores the molecular mechanisms that underlie the core genes in the two sets of patients. GSEA enables us to gain important insights by examining the differences in signaling pathways between the groups with high and low expression.</p>
</sec>
<sec id="s2-6">
<title>2.6 Transcriptional regulation analysis of key genes</title>
<p>The predictions regarding transcription factors were made using the R package &#x201c;RcisTarget.&#x201d; Within this package, algorithms are utilized that depend on motifs for the predictive analysis. Assessment of the motifs was conducted using the normalized enrichment score, which is contingent upon the total number of motifs in the database. Additionally, inference of additional annotation files was made based on motif similarity and gene sequences. To evaluate the overexpression of each motif on a gene set, the initial step involved computing the area under the curve (AUC) for every pair of motifs. This calculation was performed by organizing the gene set in the order of its motifs to generate the recovery curve. By considering the AUC distribution of all motifs within the gene set, the normalized enrichment score (NES) for each motif was determined.</p>
</sec>
<sec id="s2-7">
<title>2.7 miRNA analysis</title>
<p>In order to conduct a thorough investigation into whether specific miRNAs in crucial genes control the transcribing or breaking down of those genes, we accessed miRNAs associated with key genes from the mircode database. Subsequently, we used cytoscape software to create visual representations of the miRNA networks within these genes.</p>
</sec>
<sec id="s2-8">
<title>2.8 Statistical analysis</title>
<p>The R software was used to conduct all statistical analyses. The difference was considered significant when <italic>p</italic> &#x3c; 0.05.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>3 Results</title>
<sec id="s3-1">
<title>3.1 Predicting the Targets and Pathways of YXD for TS</title>
<p>To explore the potential targets and action mechanisms of YXD in treating TS, we applied the network pharmacology method to screen the targets of YXD and predict the signaling pathways involved in its therapeutic effects. Firstly, we searched the TCMSP for identification of all ingredients and related targets of the 10 herbs included in YXD. Then, we screened the active ingredients of YXD complex based on OB and DL parameters. As a result, we obtained a total of 127 active ingredients and 255 drug targets (8.6%) (<xref ref-type="fig" rid="F1">Figure 1B</xref>), with gene names added for all targets. Subsequently, we used the Gene Cards database to extract genes with a Relevance score greater than 5, and the OMIM database to obtain a total of 1,710 relevant targets (86.4%) for TS after removing duplicates (<xref ref-type="fig" rid="F1">Figure 1B</xref>). Through taking the intersection of these disease targets and 255 drug targets, we obtained 94 intersecting targets (5%) (<xref ref-type="fig" rid="F1">Figure 1B</xref>). The action relationships of the 10 TCMs with their action targets were illustrated using network diagrams in Cytoscape (<xref ref-type="fig" rid="F1">Figure 1A</xref>). Using the R package &#x201c;clusterprofiler,&#x201d; we performed GO enrichment and KEGG pathway analysis of 94 intersecting targets. The GO enrichment results revealed that the main pathways involved were gligogenesis, response to xenobiotic stimulus, glial cell differentiation, gland development, astrocyte differentiation, response to nutrient levels, response to alcohol, membrane raft, synaptic membrane, postsynaptic membrane, membrane microdomain, and etc. (<xref ref-type="fig" rid="F1">Figure 1C</xref>). The KEGG results showed some significant pathways involved in the genes were chemical carcinogenesis-receptor activation, IL-17 signaling pathway, TNF signaling pathway, human cytomegalovirus infection, Kaposi sarcoma-associated herpesvirus infection, AGE-RAGE signaling pathway, and etc. (<xref ref-type="fig" rid="F1">Figure 1D</xref>). Finally, we visualized the role of herbal components in relation to the targets and the regulatory networks of the pathways though depicting Herb-pathway-target network of YYXF decoction by Cytoscape software. (<xref ref-type="fig" rid="F2">Figure 2</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>
<bold>(A)</bold> Herb-compound-target network of Yangxue Xifeng Decoration. Green elliptic represens 10 herbs in the formula. The red quads stand for the active ingredients of all of 10 herbs. <bold>(B)</bold> Venn diagram of comen targets of active ingredients in modified Yangxue Xifeng Decoration and Tourette symdrome. <bold>(C)</bold> GO analysis bubble diagram for the intersecting target genes. <bold>(D)</bold> Bubble diagram of KEGG analysis for the intersecting genes.</p>
</caption>
<graphic xlink:href="fphar-15-1397203-g001.tif"/>
</fig>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>
<bold>(A)</bold> Herb-pathway-target network of Yangxue Xifeng Decoration. Yellow elliptic represent 10 herbs, blue and purple circles represent pathways, and red quads represent target protein.</p>
</caption>
<graphic xlink:href="fphar-15-1397203-g002.tif"/>
</fig>
</sec>
<sec id="s3-2">
<title>3.2 Identification of core genes related to TS</title>
<p>In order to screening out diagnostic markers for TS, we conducted a feature screening process to identify core genes related to TS as biomarkers, using LASSO regression and SVM algorithm. In <xref ref-type="fig" rid="F3">Figure 3A</xref>, the analysis of misclassification errors in jackknife rates was demonstrated. <xref ref-type="fig" rid="F3">Figure 3B</xref> displayed the profiles of LASSO coefficients for genes that initially fulfilled the prognostic criteria. Number of features versus 5 &#xd7; CV accuracy plot was shown in <xref ref-type="fig" rid="F3">Figure 3C</xref>. As a result, from the all of 96 intersecting genes obtained in the previous step, the LASSO regression screened out 5 characteristic genes in TS. Besides, the results of SVM algorithm help identified 4 characteristic genes in TS. The intersection of the two parts of genes from two methods resulted in 2 core genes, namely, <italic>OPRM1</italic> and <italic>VIM</italic>, which were further study in our subsequent study (<xref ref-type="fig" rid="F3">Figure 3</xref>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Screening of diagnostic markers for Tourette Syndrome by LASSO regression and SVM algorithms. <bold>(A)</bold> The misclassification error of the analysis of jackknife rates. <bold>(B)</bold> LASSO coefficient profiles of the genes meeting the prognostic criteria initially. <bold>(C)</bold> Number of features versus 5 &#xd7; CV accuracy plot. <bold>(D)</bold> Genes venn diagram from LASSO and SVM-RFE methods. Two conmen hub genes screened out were <italic>OPRM1</italic> and <italic>VIM</italic>. <bold>(E)</bold> The expression difference of <italic>OPRM1</italic> and <italic>VIM</italic> in disease marked in red and control groups marked in blue. <bold>(F)</bold> ROC curves for evaluating the accuracy of performance of using the <italic>OPRM1</italic> gene to predict disease. <bold>(G)</bold> Using ROC curves to evaluate performance accuracy of disease prediction by <italic>VIM</italic> gene. <italic>p</italic> &#x3c; 0.05 denoted statistical significance.</p>
</caption>
<graphic xlink:href="fphar-15-1397203-g003.tif"/>
</fig>
<p>To validate the correlation between two core gens of <italic>OPRM1</italic> and <italic>VIM</italic> and TS, the expression difference of <italic>OPRM1</italic> and <italic>VIM</italic> between the normal control and TS disease groups were analyzed. The results revealed a marked variation in expression between the two groups. The levels of <italic>OPRM1</italic> and <italic>VIM</italic> expression were notably elevated in the TS disease groups compared to the normal control group. (<xref ref-type="fig" rid="F3">Figure 3E</xref>). These results implied that there was a correlation between the two core genes and TS disease. To further explore the function of <italic>OPRM1</italic> and <italic>VIM</italic>, we evaluated the predictive efficacy of the core genes using ROC curves. These findings showed that the AUC values for <italic>OPRM1</italic> and <italic>VIM</italic> were 0.769 (<italic>OPRM1</italic>-AUC) and 0.712 (<italic>VIM</italic>-AUC), respectively, indicating their potential of <italic>OPRM1</italic> and <italic>VIM</italic> for predicting the development of TS (<xref ref-type="fig" rid="F3">Figures 3F,G</xref>).</p>
</sec>
<sec id="s3-3">
<title>3.3 Immune infiltration analysis</title>
<p>In order to further investigate the potential mechanisms of the core genes <italic>OPRM1</italic> and <italic>VIM</italic> in influencing TS progression, we conducted an analysis of immune infiltration in a TS dataset, comparing TS patients to normal controls. The box-plot diagram depicts the varied percentage of diverse immune cells, while the heat map encapsulates the immune infiltration score comparison among TS and normal group (<xref ref-type="fig" rid="F4">Figures 4A,B</xref>). These findings suggest a noteworthy increasing in Neutrophil levels within the TS disease cohort in contrast with the normal group. There other cell types including NK-cells and Th1/2 cells, etc., showed no significant difference.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>The analysis of immune infiltration in Tourette syndrome and control groups. <bold>(A)</bold> The box-plot indicates the varying proportions of distinct immune cells. <bold>(B)</bold> The heat map summarizies the immune infiltration score in Tourette syndrome and control groups. The immune infiltration difference in Tourette syndrome (red) and control groups (blue). (statistical significance indicated by <italic>p</italic>-values &#x3c;0.05).</p>
</caption>
<graphic xlink:href="fphar-15-1397203-g004.tif"/>
</fig>
<p>To further investigate the correlation between <italic>OPRM1</italic>, <italic>VIM</italic> and immune cells, based on the TISIDB database, we analyze the correlation between <italic>OPRM1</italic>, <italic>VIM</italic> and various immune factors. The results indicated that the immune inhibitors <italic>KIR2DL3</italic> and <italic>KIR2DL1</italic> were positively correlated with <italic>OPRM1</italic> (<xref ref-type="fig" rid="F5">Figure 5A</xref>). <italic>TNFRSF13B</italic>, an immune stimulator, showed the highest positive correlation with <italic>OPRM1</italic> (<xref ref-type="fig" rid="F5">Figure 5B</xref>). Additionally, Moreover, there was a positive correlation between <italic>VIM</italic> and immune stimulators CXCR4 and CD48. Conversely, <italic>VIM</italic> was negatively correlated with <italic>TNFSF9</italic> and <italic>CD276</italic> (<xref ref-type="fig" rid="F5">Figure 5B</xref>). In terms of MHC, <italic>OPRM1</italic> was negatively correlated with <italic>HLA-DPA1</italic> but a positively correlated with <italic>VIM</italic> (<xref ref-type="fig" rid="F5">Figure 5C</xref>). Furthermore, the <italic>CXCR4</italic> receptor exhibited mostly positive correlations with <italic>VIM</italic>, while <italic>CXCR3</italic> displayed predominantly negative associations with <italic>VIM</italic> (<xref ref-type="fig" rid="F5">Figure 5D</xref>). These results indicated that <italic>OPRM1</italic> and <italic>VIM</italic> were intricately associated with infiltration of immune cells and may functioned to regulate immune microenvironment. Consequently, we propose that <italic>VIM</italic> and <italic>OPRM1</italic> are linked to the extent of immune infiltration and could potentially serve as crucial regulators of the immune microenvironment. To further explore the signal pathways related with <italic>OPRM1</italic> and <italic>VIM</italic>, we performed the pathway enrichment analysis and gene ontology (GO) associated with core genes (<xref ref-type="fig" rid="F6">Figure 6</xref>). The results suggested <italic>OPRM1</italic> and <italic>VIM</italic> could function to regulate immune infiltration via multiple signal pathways.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>The relationship between core genes and immune cell permeation. Connections between characteristic genes and the level of infiltration. l including immune inhibitor <bold>(A)</bold>, immune stimulator <bold>(B)</bold>, MHC <bold>(C)</bold>, and receptor <bold>(D)</bold>.</p>
</caption>
<graphic xlink:href="fphar-15-1397203-g005.tif"/>
</fig>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>Enrichment analysis of pathway and gene ontology (GO) associated with core genes. <bold>(A, B</bold>) Gene Set enrichment analysis of <italic>OPRM1</italic>. <bold>(C, D)</bold> Gene Set Enrichment Analysis of <italic>VIM</italic>.</p>
</caption>
<graphic xlink:href="fphar-15-1397203-g006.tif"/>
</fig>
</sec>
<sec id="s3-4">
<title>3.4 Mechanisms of transcriptional regulation of key genes</title>
<p>To identify possible transcriptional regulatory mechanisms for the two core genes, R package &#x201c;RcisTarget&#x201d; was utilized to predict the transcription factors. A motif transcriptional regulation analysis of <italic>OPRM1</italic> and <italic>VIM</italic> was performed. Our findings revealed that both hub genes were controlled by the same transcription factors and other shared regulatory processes. Our findings revealed that both hub genes could be regulated by identical transcription factors and other common regulatory mechanisms. Utilizing the cumulative recovery curve (<xref ref-type="fig" rid="F7">Figure 7A</xref>), motif-TF annotation, and selection analysis results of noteworthy genes, the enrichment analysis for transcription factors unveiled that the motif cisbp__M4912 had the top normalized enrichment score (NES: 6.92). This motif was enriched in the 2 core genes with a normalized enrichment score (NES) of 5.98. The motifs enriched in the 2 core genes and the associated transcription factors were presented in <xref ref-type="fig" rid="F7">Figure 7B</xref>, which demonstrated the highest motif enrichment of AUC. Furthermore, we utilized the mircode database to search for non-coding RNA networks related to the two key genes. Our analysis predicted 59&#xa0;mRNA-miRNA pairs related to <italic>OPRM1</italic> and 34&#xa0;mRNA-miRNA pairs related to <italic>VIM</italic>. The miRNA networks of the core genes were visualized using Cytoscape (<xref ref-type="fig" rid="F7">Figure 7C</xref>).</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>Analysis of core gene transcriptional regulation. <bold>(A)</bold> Three motifs with the highest AUC values. The average of the recovery curve was marked in red, mean &#x2b; Std was marked in green, the recovery curve of the current motif was marked in blue. <bold>(B)</bold> Illustration of the motif with the highest AUC values, including TF_highConf (transcription factors), AUC (area under the curve), and NES (standardized enrichment score). <bold>(C)</bold> core genes miRNA networks, purple for the core genes of <italic>OPRM1</italic> and purple for miRNA.</p>
</caption>
<graphic xlink:href="fphar-15-1397203-g007.tif"/>
</fig>
</sec>
<sec id="s3-5">
<title>3.5 Predicting genes synergizing with key genes</title>
<p>To identify genes that interact with core genes in influencing the progression of TS disease, we conducted a correlation analysis among the expressions of <italic>OPRM1</italic>, <italic>VIM</italic> and other genes related with TS. Initially, we obtained TS-related disease genes from Gene Cards data to compile a list of TS-related genes. Then, the expression differences of these genes between TS and normal controls were analyzed. The results indicated notable variation in the expression of <italic>CIC</italic>, <italic>DLGAP3</italic>, <italic>MAPT</italic>, and <italic>MAPT</italic> between the two groups (<xref ref-type="fig" rid="F8">Figure 8A</xref>). Furthermore, we observed strong associations between the expression levels of <italic>OPRM1</italic>, <italic>VIM</italic> and other numerous TS-related genes (<xref ref-type="fig" rid="F8">Figure 8B</xref>). Notably, <italic>OPRM1</italic> negatively correlated with <italic>MAPT</italic> (r &#x3d; &#x2212;0.443). Comparatively, <italic>VIM</italic> showed a positive correlation with <italic>MAPT</italic> (r &#x3d; 0.63) (<xref ref-type="fig" rid="F8">Figure 8B</xref>).</p>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption>
<p>Analysis of correlation between the expression of core genes and other genes in Tourette syndrome. <bold>(A)</bold> The difference in other gene expression between tourette syndrome marked in red and controls marker in blue. <bold>(B)</bold> Relationships between other genes and the level of infiltration including immune inhibitor and immune simulator. Correlations between other genes and the hub gene including <italic>OPRM1</italic> (Left) and <italic>VIM</italic> (Right). <italic>OPRM1</italic> showed a significant negative correlation with <italic>MAPT</italic> (r &#x3d; &#x2212;0.443), whereas <italic>VIM</italic> demonstrated a significant positive correlation with <italic>MAPT</italic> (r &#x3d; 0.63). <italic>p</italic> &#x3c; 0.05 denoted statistical significance.</p>
</caption>
<graphic xlink:href="fphar-15-1397203-g008.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>4 Discussion</title>
<p>Although TS is usually considered non-life threatening, it can significantly impact their social interactions and physical and mental health, due to the presence of tics and associated comorbidities. (<xref ref-type="bibr" rid="B12">Eapen et al., 2016a</xref>). However, the insufficient comprehension of the pathological mechanisms of TS led to less than ideal therapy outcomes. (<xref ref-type="bibr" rid="B20">Hartmann and Worbe, 2018</xref>). The management strategy entails addressing the symptoms that result in impairment, which may necessitate psychological and/or pharmacological intervention. (<xref ref-type="bibr" rid="B2">Billnitzer and Jankovic, 2020</xref>; <xref ref-type="bibr" rid="B44">Seideman Mf Fau - Seideman and Seideman, 2020</xref>). Antipsychotics, the solitary approved category of pharmacotherapy for tic suppression, possess an undesirable risk profile associated with weight gain, metabolic irregularities, electrocardiogram (ECG) modifications, and movement disorders. (<xref ref-type="bibr" rid="B26">Kim et al., 2018</xref>). Developing knowledge of the biological basis of TS will promote TS treatments instead of just symptom management. The precise pathophysiology of TS still remains elusive. Thus, treatment approaches often rely on empirical methods. (<xref ref-type="bibr" rid="B7">Chou et al., 2023</xref>).</p>
<p>There are various strategies in Traditional Chinese medicine (TCM) about tics treatment, but almost all the traditional Chinese strategies agree that the root cause lies in liver wind. YXD have specific effects in TCM theory, effectively alleviating symptoms such as muscle twitching, vocal tics, and obscene speech throughout the body. Besides definite efficacy, TCM has few side effects and drug dependence. (<xref ref-type="bibr" rid="B52">Xiao and Tao, 2017</xref>). However, lack of a clear material basis and action mechanism for YXD hinders the wider clinical application. In this study, we utilized drug target and disease target databases to identify that all active ingredients of YXD have 96 targets related to TS, confirming its multi-component and multi-target action. Searching for key genes associated with TS aims to identify biomarkers for accurate diagnosis. Currently, diagnosing the tic disorder relies on clinical history and observation, as there are no definitive laboratory tests or medical markers available. (<xref ref-type="bibr" rid="B32">Liu et al., 2020</xref>). This poses a challenge for clinicians in making precise diagnoses. (<xref ref-type="bibr" rid="B24">Johnson et al., 2023</xref>). In this study, two core genes, <italic>OPRM1</italic> and <italic>VIM</italic>, were identified among 96 target genes using LASSO regression and SVM algorithm analyses. Furthermore, these two core genes demonstrated superior predictive efficacy in the ROC curves for diagnostic validation, suggesting that <italic>OPRM1</italic> and <italic>VIM</italic> have the potential to predict the development of TS disease. The reliable biomarkers may contribute to accurate diagnose for TS in future, helping for timely and effective treatment. (<xref ref-type="bibr" rid="B51">Xi et al., 2022</xref>).</p>
<p>The involvement of immunological pathways is observed in various neurodevelopmental processes such as the neural circuits refinement and formation. However, there is still a lack of information on the efficacy of interventions targeting immune system modulation. (e.g., through environmental modifications) for treating disorders such as TS. (<xref ref-type="bibr" rid="B34">Martino et al., 2020</xref>). It is believed that immune mechanisms might function in the developmental changes that underlie the behavioral anomalies seen in TS. (<xref ref-type="bibr" rid="B22">Hsu et al., 2021a</xref>; <xref ref-type="bibr" rid="B35">Martino et al., 2015</xref>). The <italic>post mortem</italic> studies and animal models have suggested that microglia played vital role in the crosstalk between the neural and immune systems. Clinical research investigating immune cell subpopulations, cytokine and immunoglobulin levels and etc., have indicated the systemic immune response overactivity. The evidence indicated the disease mechanisms in TS, akin to other neurodevelopmental disorders such as autism, could involve impaired communication between the neural and immune systems. Consequently, this may result in changes in the development of brain pathways that control different behavioral aspects and could potentially affect the coordination of stress and immune responses (<xref ref-type="bibr" rid="B35">Martino et al., 2015</xref>). A better understanding of the key molecular pathways influencing neuroimmune interactions in TS can facilitate the discovery of effective biomarkers and more personalized therapeutic approaches. Our findings reveal elevated neutrophil levels in the TS disease cohort compared to controls, consistent with existing literature. Previous studies have observed increased neutrophil-lymphocyte ratios (NLR) across multiple psychiatric conditions. This suggests that abnormal NLR may indicate a general pathological brain process rather than being disorder-specific. Such results support the neuroinflammation hypothesis in psychiatric etiology. Future investigations should explore the links between NLR and specific diagnostic and behavioral constructs to further elucidate these relationships (<xref ref-type="bibr" rid="B1">Bhikram and Sandor, 2022</xref>). Our immune infiltration analysis confirmed that the core genes are involved in regulating the immune microenvironment. This results is consistent with the previous section in which we found that TNF and IL-17 signaling pathways mainly involved in YXT. Investigations into TS reveal heightened inflammation indicators. Notably, tumor necrosis factor-alpha and various interleukins (e.g., IL-1&#x3b2; through IL-17) show increased presence. Abnormal cytokine levels can mimic TS symptoms, suggesting a potential link between this condition and chronic inflammatory processes (<xref ref-type="bibr" rid="B28">Leckman et al., 2005</xref>; <xref ref-type="bibr" rid="B23">Hsu et al., 2021b</xref>).</p>
<p>Immune disorders have been implicated in the progression of TS, but no specific targets was reported for treating TS by modulating the immune system. This may explain why immune system modulators are not included in the drugs used for the clinical treatment of TS. As a complementary finding, our results suggest that <italic>OPRM1</italic> and <italic>VIM</italic> could serve as potential drug targets to regulate the expression levels of immune inhibitors and immune simulators, thereby improving the immune microenvironment. Immune simulators related to <italic>OPRM1</italic> include <italic>TNFRSF13B</italic>, while immune inhibitors include <italic>KIR2DL3</italic> and <italic>KIR2DL1</italic>. Immune simulators related to <italic>VIM</italic> include <italic>CXCR4</italic> and <italic>CD48</italic>, while immune inhibitors include <italic>TNFSF9</italic> and <italic>CD276</italic>. The specific roles of these immune-related genes in TS warrant further exploration. In conclusion, this study provides evidence that immune regulation participated in the mechanism of action of YXT in treating TS and suggests that <italic>OPRM1</italic> and <italic>VIM</italic> could be potential targets for regulating the immune microenvironment.</p>
<p>
<italic>OPRM1</italic> and <italic>VIM</italic>, as core genes, can not only serve as biomarkers and drug targets for TS but also provide a research entrance for further discovery of TS-related molecular mechanisms. Existing studies have shown a greater inclination towards finding evidence that <italic>OPRM1</italic> affects TS compared to <italic>VIM</italic>. (<xref ref-type="bibr" rid="B10">Depienne et al., 2019</xref>; <xref ref-type="bibr" rid="B50">Widomska et al., 2023</xref>). In fact, a TS cohort was screened for additional variants in <italic>OPRM1</italic> using Sanger sequencing, which identified eight rare variants. (<xref ref-type="bibr" rid="B48">Tchalova et al., 2021</xref>). Interestingly, all <italic>OPRM1</italic> variations were inherited from a parent without symptoms, suggesting that variants in opioid receptors may be susceptibility factors for TS. (<xref ref-type="bibr" rid="B48">Tchalova et al., 2021</xref>). Furthermore, frequent variants of <italic>OPRM1</italic> have been correlated with impulse control disorders in Parkinson patients recently. (<xref ref-type="bibr" rid="B8">Cormier-Dequaire et al., 2018</xref>). The discovery supported that mutations in opioid receptors play a role in impulsive disorders, which are often comorbid with TS (<xref ref-type="bibr" rid="B39">Paschou et al., 2013</xref>; <xref ref-type="bibr" rid="B15">Elamin et al., 2013</xref>). A recent study aimed to construct a molecular landscape of TD, which revealed signs of increased expression of candidate genes involved in TD in four regions of the brain and the pituitary gland.</p>
<p>The landscape of TS offered opportunity to underly molecular mechanism of TS, and provided potential targets for drug intervention in Tic Disorders (TD). <italic>OPRM1</italic>, <italic>CX3CL1-CX3CR1</italic>, <italic>NAALAD2</italic>, <italic>FLT3</italic> are examples of these potential targets. (<xref ref-type="bibr" rid="B50">Widomska et al., 2023</xref>). In line with previous research, we have identified <italic>OPRM1</italic> and <italic>VIM</italic> as core genes in TS and established a network of target pathways. Previous studies have shown that <italic>OPRM1</italic> exhibits regional specificity in TD, being highly expressed in the TD patient brains but specifically decreased in the striatum <italic>postmortem</italic>. (<xref ref-type="bibr" rid="B29">Lennington et al., 2016</xref>). We also investigated the possible signaling pathways related with <italic>OPRM1</italic> and <italic>VIM</italic>, and conducted enrichment analyses using GO and KEGG. Additionally, we explored potential mechanisms for the transcriptional regulation. As a result, 59 pairs of mRNA-miRNA interactions related to <italic>OPRM1</italic> and 34 pairs related to <italic>VIM</italic> were predicted. Furthermore, we found remarkable association between the <italic>OPRM1</italic> and <italic>VIM</italic> expression, and other TS-related genes, including <italic>MAPT</italic> and <italic>MAPT</italic>. These findings provide evidence supporting the use of <italic>OPRM1</italic> and <italic>VIM</italic> as biomarkers and drug targets in the context of TS.</p>
<p>Gene expression regulation heavily relies on transcription factors (<xref ref-type="bibr" rid="B9">Dec. Erga et al., 2018</xref>). We utilized RcisTarget to identify significant binding motifs and their associated transcription factors for <italic>OPRM1</italic> and <italic>VIM</italic> genes. This approach allows prediction of potential binding sites through motif sequence extraction, enabling further investigation of underlying molecular mechanisms. (<xref ref-type="bibr" rid="B27">Kuret et al., 2022</xref>). MicroRNAs (miRNAs) are short non-coding RNA sequences, spanning 21-25 nucleotides, that can bind to the 3&#x2032; UTR of target mRNAs, resulting in their degradation or translation suppression. (<xref ref-type="bibr" rid="B21">He and Hannon, 2004</xref>). Our mRNA-miRNA regulatory network analysis revealed miR-155, miR-204, miR-124, and miR-129-5p as the most highly connected among the four hub genes. Research has shown that miRNAs can influence inflammatory signaling, potentially leading to uncontrolled neuroinflammation and associated pathologies like Tourette Syndrome (TS) (<xref ref-type="bibr" rid="B43">Rizzo et al., 2015</xref>). For instance, miR-155 acts as a pro-inflammatory mediator in the central nervous system and plays a crucial role in neuroinflammatory disorders such as multiple sclerosis and Alzheimer&#x2019;s disease (<xref ref-type="bibr" rid="B18">Ghafouri-Fard et al., 2021</xref>). miR-124, while predominantly expressed in the brain, is also found in various human and animal tissues. It contributes to the pathogenesis of several disorders, and its abnormal expression has been linked to various neurological conditions due to its vital role in nervous system development (<xref ref-type="bibr" rid="B54">Zingale et al., 2021</xref>). Targeting miRNA expression offers a promising therapeutic avenue for addressing pathological neuroinflammation. In this research, we constructed an mRNA-miRNA regulatory network of hub genes to identify various miRNAs that may influence TS development and progression.</p>
<p>Network pharmacology is a promising technique that offers advantages such as low cost and high efficiency (<xref ref-type="bibr" rid="B33">Luo et al., 2020</xref>; <xref ref-type="bibr" rid="B53">Zhou et al., 2020</xref>). However, it still has some limitations. This study identifies three main limitations. Firstly, the study&#x2019;s objectives were sourced from diverse databases, each with distinct areas of emphasis. It is crucial to acknowledge that conducting an integrated analysis of multiple databases carries inherent risks owing to their inherent dissimilarities. Secondly, additional foundational experimental and clinical investigations can be performed to corroborate the precision of the results. Network pharmacology theoretically analyzes the material basis of TCM for treating a certain disease, but ignores the feasibility from prediction to realization. For example, there is a wide variety of ingredients and their contents vary greatly in herbs. Network pharmacology cannot take into account the reduction in likelihood by lower ingredient content. In fact, some ingredients, although known to be effective, cannot be purified because of their extremely low content or cannot be industrially synthesized because of their complex structure. Thirdly, the qualitative phase of network pharmacology research on TCM formula investigation still focuses primarily on exploring novel targets and understanding the drug&#x2019;s mechanism. However, it is crucial to establish a relationship between the dosage of the medication and the specific ailment.</p>
</sec>
<sec sec-type="conclusion" id="s5">
<title>5 Conclusion</title>
<p>TS, a disorder with multiple pathogenic mechanisms and undefined pathological targets, is often associated with obsessive-compulsive disorder, sleep disorders, mood disorders, and other psychobehavioral problems. This may explain why existing drugs are not effective in treating TS. YXD, a compound prescription of Traditional Chinese Medicines, has multiple targets and mechanisms of action, providing more satisfactory clinical efficacy. Network pharmacology was utilized to map the component-target-pathway network of YXD for the treatment of TS. Through this approach, we identified two core genes, <italic>OPRM1</italic> and <italic>VIM</italic>, and predicted their molecular mechanisms in affecting TS through immune infiltration and transcriptional regulation. Based on the reported evidence, <italic>OPRM1</italic> appears to be a plausible biomarker for TS. The active ingredients, targets and molecular mechanisms were elucidated to some extent, which will promote the clinical application of YXD. In future applications of YXD in clinical therapy or drug development, it is important to consider the challenges posed by the content and structure of the individual active ingredients.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s6">
<title>Data availability statement</title>
<p>The data used in our study is publicly available. TCMSP Database: Data can be found at <ext-link ext-link-type="uri" xlink:href="https://old.tcmsp-e.com/tcmsp.php">https://old.tcmsp-e.com/tcmsp.php</ext-link>. OMIM Database: Data can be found at <ext-link ext-link-type="uri" xlink:href="https://www.omim.org/">https://www.omim.org/</ext-link>. Genecard Database: Data can be found at <ext-link ext-link-type="uri" xlink:href="https://www.genecards.org/">https://www.genecards.org/</ext-link>. GEO Database: Data can be found at <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/geo/">https://www.ncbi.nlm.nih.gov/geo/</ext-link>. TS Dataset GSE30470: The specific dataset can be accessed at <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi&#x3f;acc=GSE30470">https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi&#x3f;acc&#x003D;GSE30470</ext-link>.</p>
</sec>
<sec id="s7">
<title>Author contributions</title>
<p>JZ: Writing&#x2013;original draft. XB: Writing&#x2013;review and editing.</p>
</sec>
<sec sec-type="funding-information" id="s8">
<title>Funding</title>
<p>The author(s) declare that no financial support was received for the research, authorship, and/or publication of this article.</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bhikram</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Sandor</surname>
<given-names>P.</given-names>
</name>
</person-group> (<year>2022</year>). <article-title>Neutrophil-lymphocyte ratios as inflammatory biomarkers in psychiatric patients</article-title>. <source>Behav Immun</source> <volume>105</volume>, <fpage>237</fpage>&#x2013;<lpage>246</lpage>. <pub-id pub-id-type="doi">10.1016/j.bbi.2022.07.006</pub-id>
</citation>
</ref>
<ref id="B2">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Billnitzer</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Jankovic</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Current anagement of ics and ourette yndrome: ehavioral, harmacologic, and urgical reatments</article-title>. <source>Neurotherapeutics</source> <volume>17</volume>, <fpage>1681</fpage>&#x2013;<lpage>1693</lpage>. <pub-id pub-id-type="doi">10.1007/s13311-020-00914-6</pub-id>
</citation>
</ref>
<ref id="B3">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Brady</surname>
<given-names>M. V.</given-names>
</name>
<name>
<surname>Mariani</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Koca</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Szekely</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>King</surname>
<given-names>R. A.</given-names>
</name>
<name>
<surname>Bloch</surname>
<given-names>M. A.-O.</given-names>
</name>
<etal/>
</person-group> (<year>2022</year>). <article-title>Mispatterning and interneuron deficit in Tourette Syndrome basal ganglia organoids</article-title>. <source>Molecular psychiatry</source>, <fpage>1476</fpage>&#x2013;<lpage>5578</lpage>. <pub-id pub-id-type="doi">10.1038/s41380-022-01880-5</pub-id>
</citation>
</ref>
<ref id="B4">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Buse</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Schoenefeld K Fau - M&#xfc;nchau</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>M&#xfc;nchau A Fau - Roessner</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Roessner</surname>
<given-names>V.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Neuromodulation in Tourette syndrome: dopamine and beyond</article-title>. <source>Neurosci Biobehav Rev</source>, <fpage>1873</fpage>&#x2013;<lpage>7528</lpage>. <pub-id pub-id-type="doi">10.1016/j.neubiorev.2013.03.012</pub-id>
</citation>
</ref>
<ref id="B5">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cavanna</surname>
<given-names>A. E.</given-names>
</name>
<name>
<surname>Ganos</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Hartmann</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Martino</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Pringsheim</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Seri</surname>
<given-names>S.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>The cognitive neuropsychiatry of Tourette syndrome</article-title>. <source>Cogn Neuropsychiatry</source>, <fpage>1464</fpage>&#x2013;<lpage>0619</lpage>. <pub-id pub-id-type="doi">10.1080/13546805.2020.1760812</pub-id>
</citation>
</ref>
<ref id="B6">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chen</surname>
<given-names>C. W.</given-names>
</name>
<name>
<surname>Hsueh</surname>
<given-names>C. W.</given-names>
</name>
<name>
<surname>Chung</surname>
<given-names>C. H.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>H. S.</given-names>
</name>
<name>
<surname>Chang</surname>
<given-names>H. J.</given-names>
</name>
<name>
<surname>Chien</surname>
<given-names>W. C.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>The association between tic medication therapy and psychiatric comorbidities among patients with Tourette syndrome: national population-based study in Taiwan</article-title>. <source>Brain Dev</source>, <fpage>1872</fpage>&#x2013;<lpage>7131</lpage>. <pub-id pub-id-type="doi">10.1016/j.braindev.2020.01.002</pub-id>
</citation>
</ref>
<ref id="B7">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chou</surname>
<given-names>C. Y.</given-names>
</name>
<name>
<surname>Agin-Liebes</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Kuo</surname>
<given-names>S. H.</given-names>
</name>
</person-group> (<year>2023</year>). <article-title>Emerging therapies and recent advances for Tourette syndrome</article-title>. <source>Heliyon</source> <volume>9</volume>, <fpage>2405</fpage>&#x2013;<lpage>8440</lpage>. <pub-id pub-id-type="doi">10.1016/j.heliyon.2023.e12874</pub-id>
</citation>
</ref>
<ref id="B8">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cormier-Dequaire</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Bekadar</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Anheim</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Lebbah</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Pelissolo</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Krack</surname>
<given-names>P.</given-names>
</name>
<etal/>
</person-group> (<year>2018</year>). <article-title>Suggestive association between OPRM1 and impulse control disorders in Parkinson&#x27;s disease</article-title>. <source>Electronic</source> <volume>33</volume>, <fpage>1878</fpage>&#x2013;<lpage>1886</lpage>. <pub-id pub-id-type="doi">10.1002/mds.27519</pub-id>
</citation>
</ref>
<ref id="B9">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Dec. Erga</surname>
<given-names>A. H.</given-names>
</name>
<name>
<surname>Dalen</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Ushakova</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Chung</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Tzoulis</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Tysnes</surname>
<given-names>O. B.</given-names>
</name>
<etal/>
</person-group> (<year>2018</year>). <article-title>Dopaminergic and pioid athways ssociated with mpulse ontrol isorders in Parkinson&#x27;s isease</article-title>. <source>Front. Neurosci</source> <volume>15</volume>, <fpage>1664</fpage>&#x2013;<lpage>2295</lpage>. <pub-id pub-id-type="doi">10.3389/fnins.2021.654238</pub-id>
</citation>
</ref>
<ref id="B10">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Depienne</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Ciura</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Trouillard</surname>
<given-names>O.</given-names>
</name>
<name>
<surname>Bouteiller</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Leit&#xe3;o</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Nava</surname>
<given-names>C.</given-names>
</name>
<etal/>
</person-group> (<year>2019</year>). <article-title>Association of are enetic ariants in pioid eceptors with ourette yndrome</article-title>. <source>LID</source> <volume>9</volume>, <fpage>2160</fpage>&#x2013;<lpage>8288</lpage>. <pub-id pub-id-type="doi">10.5334/tohm.464</pub-id>
</citation>
</ref>
<ref id="B11">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Dom&#xe8;nech</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Cappi</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Halvorsen</surname>
<given-names>M. A.-O.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Genetic architecture of Tourette syndrome: Our current understanding</article-title>. <source>J. Genet. Psychol.</source>
</citation>
</ref>
<ref id="B12">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Eapen</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Cavanna</surname>
<given-names>A. E.</given-names>
</name>
<name>
<surname>Robertson</surname>
<given-names>M. M.</given-names>
</name>
</person-group> (<year>2016a</year>). <article-title>Social impact and quality of life in Tourette syndrome</article-title>. <source>J. Behav. Health</source>.</citation>
</ref>
<ref id="B13">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Eapen</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Snedden</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>&#x10c;rn&#x10d;ec</surname>
<given-names>R.</given-names>
</name>
</person-group> (<year>2016b</year>). <article-title>Tourette syndrome, co-morbidities, and quality of life</article-title>. <source>Clin. Psychol. Rev</source>.</citation>
</ref>
<ref id="B14">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Efron</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Dale</surname>
<given-names>R. C.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Tics and Tourette syndrome</article-title>. <source>Neuropsychiatr. dis. treat</source>.</citation>
</ref>
<ref id="B15">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Elamin</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Edwards Mj Fau - Martino</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Martino</surname>
</name>
</person-group> (<year>2013</year>). <article-title>Immune dysfunction in Tourette syndrome</article-title>. <source>J. Immunol. Res</source>.</citation>
</ref>
<ref id="B16">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Felling</surname>
<given-names>R. J.</given-names>
</name>
<name>
<surname>Singer</surname>
<given-names>H. S.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Neurobiology of syndrome: current status and need for further investigation</article-title>. <source>J Neurosci</source> <volume>31</volume>, <fpage>1529</fpage>&#x2013;<lpage>2401</lpage>. <pub-id pub-id-type="doi">10.1523/JNEUROSCI.0150-11.2011</pub-id>
</citation>
</ref>
<ref id="B17">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>First</surname>
<given-names>M. B.</given-names>
</name>
</person-group> (<year>2012</year>). &#x201c;<article-title>Diagnostic and statistical manual of mental disorders</article-title>,&#x201d; in <source>linical utility</source>. Editors <person-group person-group-type="editor">
<name>
<surname>Cavanna</surname>
<given-names>A. E.</given-names>
</name>
<name>
<surname>Termine</surname>
<given-names>C.</given-names>
</name>
</person-group> <edition>5th Edn</edition> (<publisher-loc>Washington, DC</publisher-loc>: <publisher-name>Tourette syndrome</publisher-name>), <fpage>1539</fpage>&#x2013;<lpage>736</lpage>. <pub-id pub-id-type="doi">10.1097/NMD.0b013e3182a2168a</pub-id>
</citation>
</ref>
<ref id="B18">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ghafouri-Fard</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Shoorei</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Bahroudi</surname>
<given-names>Z.</given-names>
</name>
<name>
<surname>Abak</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Majidpoor</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Taheri</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>An update on the role of miR-124 in the pathogenesis of human disorders</article-title>. <source>Biomed Pharmacother</source> <volume>135</volume>, <fpage>111198</fpage>. <pub-id pub-id-type="doi">10.1016/j.biopha.2020.111198</pub-id>
</citation>
</ref>
<ref id="B19">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gilbert</surname>
<given-names>D. L.</given-names>
</name>
<name>
<surname>Dubow</surname>
<given-names>J. S.</given-names>
</name>
<name>
<surname>Cunniff</surname>
<given-names>T. M.</given-names>
</name>
<name>
<surname>Wanaski</surname>
<given-names>S. P.</given-names>
</name>
<name>
<surname>Atkinson</surname>
<given-names>S. D.</given-names>
</name>
<name>
<surname>Mahableshwarkar</surname>
<given-names>A. R.</given-names>
</name>
</person-group> (<year>2024</year>). <article-title>Innovative therapies for Tourette syndrome: a trial</article-title>. <source>Pediatrics</source>, <fpage>e2022059574</fpage>. <pub-id pub-id-type="doi">10.1542/peds.2022-059574</pub-id>
</citation>
</ref>
<ref id="B20">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hartmann</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Worbe</surname>
<given-names>Y.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Tourette syndrome: clinical spectrum, mechanisms and personalized treatments</article-title>. (<fpage>1473</fpage>&#x2013;<lpage>6551</lpage>. <pub-id pub-id-type="doi">10.1097/WCO.0000000000000575</pub-id>
</citation>
</ref>
<ref id="B21">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>He</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Hannon</surname>
<given-names>G. J. MRAs</given-names>
</name>
</person-group> (<year>2004</year>). <article-title>MicroRNAs: small RNAs with a big role in gene regulation</article-title>. <source>Nat Rev Genet</source> <volume>5</volume> (<issue>7</issue>), <fpage>522</fpage>&#x2013;<lpage>531</lpage>. <pub-id pub-id-type="doi">10.1038/nrg1379</pub-id>
</citation>
</ref>
<ref id="B22">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hsu</surname>
<given-names>C. J.</given-names>
</name>
<name>
<surname>Wong</surname>
<given-names>L. C.</given-names>
</name>
<name>
<surname>Lee</surname>
<given-names>W. T.</given-names>
</name>
</person-group> (<year>2021a</year>). <article-title>Immunological ysfunction in ourette yndrome and elated isorders</article-title>. <source>Int. J. Mol. Sci.</source> <volume>22</volume>, <fpage>853</fpage>. <comment>LID - 10.3390/ijms22020853 [doi] LID - 853. (1422-0067)</comment>. <pub-id pub-id-type="doi">10.3390/ijms22020853</pub-id>
</citation>
</ref>
<ref id="B23">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hsu</surname>
<given-names>C. J.</given-names>
</name>
<name>
<surname>Wong</surname>
<given-names>L. C.</given-names>
</name>
<name>
<surname>Lee</surname>
<given-names>W. T.</given-names>
</name>
</person-group> (<year>2021b</year>). <article-title>Immunological ysfunction in ourette yndrome and elated isorders</article-title>. <source>Int J Mol Sci</source> <volume>22</volume> (<issue>2</issue>), <fpage>853</fpage>. <pub-id pub-id-type="doi">10.3390/ijms22020853</pub-id>
</citation>
</ref>
<ref id="B24">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Johnson</surname>
<given-names>K. A.</given-names>
</name>
<name>
<surname>Worbe</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Foote</surname>
<given-names>K. D.</given-names>
</name>
<name>
<surname>Butson</surname>
<given-names>C. R.</given-names>
</name>
<name>
<surname>Gunduz</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Okun</surname>
<given-names>M. S.</given-names>
</name>
</person-group> (<year>2023</year>). <article-title>Tourette syndrome: clinical features</article-title>. <fpage>1474</fpage>&#x2013;<lpage>4465</lpage>.</citation>
</ref>
<ref id="B25">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Kattner</surname>
<given-names>A. A.</given-names>
</name>
</person-group> (<year>2022</year>). &#x201c;<article-title>What makes tics tick? Insights into tourette syndrome</article-title>,&#x201d; in <source>Neuroscience and Biobehavioral Reviews</source>. <publisher-loc>New York, NY</publisher-loc>: <publisher-name>Elsevier</publisher-name>.</citation>
</ref>
<ref id="B26">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kim</surname>
<given-names>D. D.</given-names>
</name>
<name>
<surname>Barr</surname>
<given-names>A. M.</given-names>
</name>
<name>
<surname>Chung</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Yuen</surname>
<given-names>J. W. Y.</given-names>
</name>
<name>
<surname>Etminan</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Carleton</surname>
<given-names>B. C.</given-names>
</name>
<etal/>
</person-group> (<year>2018</year>). <article-title>Antipsychotic-ssociated symptoms of tourette syndrome</article-title>. <source>A Syst Rev</source>, <fpage>1179</fpage>&#x2013;<lpage>1934</lpage>. <pub-id pub-id-type="doi">10.1007/s40263-018-0559-8</pub-id>
</citation>
</ref>
<ref id="B27">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kuret</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Amalietti</surname>
<given-names>A. G.</given-names>
</name>
<name>
<surname>Jones</surname>
<given-names>D. M.</given-names>
</name>
<name>
<surname>Capitanchik</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Ule</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2022</year>). <article-title>Positional motif analysis reveals the extent of specificity of protein-RNA interactions observed by CLIP</article-title>. <source>Genome Biol</source> <volume>23</volume> (<issue>1</issue>), <fpage>191</fpage>. <pub-id pub-id-type="doi">10.1186/s13059-022-02755-2</pub-id>
</citation>
</ref>
<ref id="B28">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Leckman</surname>
<given-names>J. F.</given-names>
</name>
<name>
<surname>Katsovich L Fau - Kawikova</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Kawikova I Fau - Lin</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Lin</surname>
</name>
<name>
<surname>Fau - Zhang</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Zhang H Fau - Kr&#xf6;nig</surname>
<given-names>H.</given-names>
</name>
<etal/>
</person-group> (<year>2005</year>). <article-title>Increased serum levels of interleukin-12 and tumor necrosis factor-alpha in Tourette&#x27;s syndrome</article-title>. <source>Biol. Psychiatry</source> <volume>57</volume>, <fpage>667</fpage>&#x2013;<lpage>673</lpage>. <comment>0006-3223)</comment>. <pub-id pub-id-type="doi">10.1016/j.biopsych.2004.12.004</pub-id>
</citation>
</ref>
<ref id="B29">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lennington</surname>
<given-names>J. B.</given-names>
</name>
<name>
<surname>Coppola</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Kataoka-Sasaki</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Fernandez</surname>
<given-names>T. V.</given-names>
</name>
<name>
<surname>Palejev</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Li</surname>
<given-names>Y.</given-names>
</name>
<etal/>
</person-group> (<year>2016</year>). <article-title>Transcriptome nalysis of the uman triatum in ourette yndrome</article-title>. <source>Biol Psychiatry</source> <volume>372</volume>, <fpage>1873</fpage>&#x2013;<lpage>2402</lpage>. <pub-id pub-id-type="doi">10.1016/j.biopsych.2014.07.018</pub-id>
</citation>
</ref>
<ref id="B30">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Lin</surname>
<given-names>W. D.</given-names>
</name>
<name>
<surname>Tsai</surname>
<given-names>F. J.</given-names>
</name>
<name>
<surname>Chou</surname>
<given-names>I. C.</given-names>
</name>
</person-group> (<year>2022</year>). &#x201c;<article-title>Current understanding of the genetics of Tourette syndrome</article-title>,&#x201d; in <source>Journal of Medical Genetics</source>. <publisher-loc>London, UK</publisher-loc>: <publisher-name>BMJ Publishing Group</publisher-name>.</citation>
</ref>
<ref id="B31">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liu</surname>
<given-names>Z.</given-names>
</name>
<name>
<surname>Li</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Pan</surname>
<given-names>S.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Discovery and alidation of ey iomarkers ased on mmune nfiltrates in Alzheimer&#x27;s isease</article-title>. <source>Front Genet</source> <volume>12</volume>, <fpage>658323</fpage>. <pub-id pub-id-type="doi">10.3389/fgene.2021.658323</pub-id>
</citation>
</ref>
<ref id="B32">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liu</surname>
<given-names>Z. S.</given-names>
</name>
<name>
<surname>Cui</surname>
<given-names>Y. H.</given-names>
</name>
<name>
<surname>Sun</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Lu</surname>
<given-names>Q.</given-names>
</name>
<name>
<surname>Jiang</surname>
<given-names>Y. W.</given-names>
</name>
<name>
<surname>Jiang</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>Current tatus, iagnosis, and reatment ecommendation for ic isorders in China</article-title>. <source>Front. Psychiatry</source> <volume>11</volume>, <fpage>1664</fpage>&#x2013;<lpage>0640</lpage>. <pub-id pub-id-type="doi">10.3389/fpsyt.2020.00774</pub-id>
</citation>
</ref>
<ref id="B33">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Luo</surname>
<given-names>T. T.</given-names>
</name>
<name>
<surname>Lu</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Yan</surname>
<given-names>S. K.</given-names>
</name>
<name>
<surname>Xiao</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Rong</surname>
<given-names>X. L.</given-names>
</name>
<name>
<surname>Guo</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Network harmacology in esearch of Chinese edicine ormula: ethodology, pplication and rospective</article-title>. <source>Chin. J. Integr. Med.</source> <volume>26</volume>, <fpage>72</fpage>&#x2013;<lpage>80</lpage>. <pub-id pub-id-type="doi">10.1007/s11655-019-3064-0</pub-id>
</citation>
</ref>
<ref id="B34">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Martino</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Johnson</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Leckman</surname>
<given-names>J. F.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>What oes mmunology ave to o ith ormal rain evelopment and the athophysiology nderlying ourette yndrome and elated europsychiatric isorders?</article-title> <source>Front. Neurol.</source> <volume>11</volume>, <fpage>1664</fpage>&#x2013;<lpage>2295</lpage>. <pub-id pub-id-type="doi">10.3389/fneur.2020.567407</pub-id>
</citation>
</ref>
<ref id="B35">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Martino</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Zis</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Buttiglione</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2015</year>). &#x201c;<article-title>The role of immune mechanisms in Tourette syndrome</article-title>,&#x201d; in <source>Brain, Behavior, and Immunity</source>. <publisher-loc>San Diego, CA</publisher-loc>: <publisher-name>Academic Press</publisher-name>.</citation>
</ref>
<ref id="B36">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Nilles</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Hartmann</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Roze</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Martino</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Pringsheim</surname>
<given-names>T.</given-names>
</name>
</person-group> (<year>2023</year>). <source>Tourette syndrome and other tic disorders of childhood</source>.</citation>
</ref>
<ref id="B37">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Niu</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Xie</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Xiong</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Jiang</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2022</year>). &#x201c;<article-title>Network pharmacology-based analysis of the anti-hyperglycemic active ingredients and experimental validation</article-title>,&#x201d; in <source>Pharmacological Research</source>. <publisher-loc>London, UK</publisher-loc>: <publisher-name>Elsevier</publisher-name>.</citation>
</ref>
<ref id="B38">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ogundele</surname>
<given-names>M. O.</given-names>
</name>
<name>
<surname>Ayyash</surname>
<given-names>H. F.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Review of the evidence for the management of co-morbid Tic disorders in children and adolescents with attention deficit hyperactivity disorder</article-title>. <source>World J Clin Pediatr</source> <volume>7</volume>, <fpage>2219</fpage>&#x2013;<lpage>2808</lpage>. <pub-id pub-id-type="doi">10.5409/wjcp.v7.i1.36</pub-id>
</citation>
</ref>
<ref id="B39">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Paschou</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Fernandez Tv Fau - Sharp</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Sharp F Fau - Heiman</surname>
<given-names>G. A.</given-names>
</name>
<name>
<surname>Heiman Ga Fau - Hoekstra</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>Hoekstra</surname>
<given-names>P. J.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Genetic susceptibility and neurotransmitters in Tourette syndrome</article-title>. <source>Electronic</source>, <fpage>2162</fpage>&#x2013;<lpage>5514</lpage>.</citation>
</ref>
<ref id="B40">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pringsheim</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Holler-Managan</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Okun</surname>
<given-names>M. S.</given-names>
</name>
<name>
<surname>Jankovic</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Piacentini</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Cavanna</surname>
<given-names>A. E.</given-names>
</name>
<etal/>
</person-group> (<year>2019a</year>). <article-title>Comprehensive systematic review summary: reatment of tics in people with Tourette syndrome and chronic tic disorders</article-title>. <source>Neurology</source> <volume>92</volume>, <fpage>1526</fpage>&#x2013;<lpage>632X</lpage>. <pub-id pub-id-type="doi">10.1212/WNL.0000000000007467</pub-id>
</citation>
</ref>
<ref id="B41">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Pringsheim</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Okun</surname>
<given-names>M. S.</given-names>
</name>
<name>
<surname>M&#xfc;ller-Vahl</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Martino</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Jankovic</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Cavanna</surname>
<given-names>A. E.</given-names>
</name>
<etal/>
</person-group> (<year>2019b</year>). <source>Practice guideline recommendations summary: reatment of tics in people with Tourette syndrome and chronic tic disorders</source>.</citation>
</ref>
<ref id="B42">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ramkiran</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Heidemeyer</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Gaebler</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Shah</surname>
<given-names>N. J.</given-names>
</name>
<name>
<surname>Neuner</surname>
<given-names>I.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Alterations in basal ganglia-cerebello-thalamo-cortical connectivity and whole brain functional network topology in Tourette&#x2019;s syndrome</article-title>. <source>NeuroImage: Clinical</source> <volume>24</volume>, <fpage>101998</fpage>. <pub-id pub-id-type="doi">10.1016/j.nicl.2019.101998</pub-id>
</citation>
</ref>
<ref id="B43">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rizzo</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Ragusa</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Barbagallo</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Sammito</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Gulisano</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Cal&#xec;</surname>
<given-names>P. V.</given-names>
</name>
<etal/>
</person-group> (<year>2015</year>). <article-title>Circulating miRNAs profiles in Tourette syndrome: molecular data and clinical implications</article-title>. <source>Mol</source> <volume>8</volume>, <fpage>44</fpage>. <pub-id pub-id-type="doi">10.1186/s13041-015-0133-y</pub-id>
</citation>
</ref>
<ref id="B44">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Seideman Mf Fau - Seideman</surname>
<given-names>T. A.</given-names>
</name>
<name>
<surname>Seideman</surname>
<given-names>T. A.</given-names>
</name>
</person-group> (<year>2020</year>). <source>A eview of the urrent reatment of ourette yndrome</source>.</citation>
</ref>
<ref id="B45">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Set</surname>
<given-names>K. K.</given-names>
</name>
<name>
<surname>Warner</surname>
<given-names>J. N.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Traditional Chinese medicine (TCM) therapy</article-title>. <source>J. Altern. Complement. Med</source>.</citation>
</ref>
<ref id="B46">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Shang</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Li</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Zhou</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Xiao</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Liu</surname>
<given-names>Y.</given-names>
</name>
<etal/>
</person-group> (<year>2023</year>). <article-title>Mechanism of Decoction in the treatment of colorectal cancer based on network pharmacology and experimental validation</article-title>. <source>J Ethnopharmacol</source> <volume>302</volume>, <fpage>1872</fpage>&#x2013;<lpage>7573</lpage>. <pub-id pub-id-type="doi">10.1016/j.jep.2022.115876</pub-id>
</citation>
</ref>
<ref id="B47">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Szejko</surname>
<given-names>N.</given-names>
</name>
</person-group> (<year>2022</year>). <article-title>Chapter Four - update and recent progress in the neurobiology of Tourette syndrome</article-title>. In <source>International review of movement disorders</source>, <person-group person-group-type="editor">
<name>
<surname>Lavoie</surname>
<given-names>M. E.</given-names>
</name>
<name>
<surname>Cavanna</surname>
<given-names>A. E.</given-names>
</name>
</person-group> <volume>3</volume>; <publisher-name>Academic Press</publisher-name>, <publisher-loc>United States</publisher-loc> <fpage>131</fpage>&#x2013;<lpage>158</lpage>.</citation>
</ref>
<ref id="B48">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tchalova</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Sadikaj</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Moskowitz</surname>
<given-names>D. S.</given-names>
</name>
<name>
<surname>Zuroff</surname>
<given-names>D. C.</given-names>
</name>
<name>
<surname>Bartz</surname>
<given-names>J. A.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Variation in the &#x3bc;-opioid receptor gene (OPRM1) and experiences of felt security in response to a romantic partner&#x27;s quarrelsome behavior</article-title>. <source>Mol Psychiatry</source> <volume>26</volume>, <fpage>1476</fpage>&#x2013;<lpage>5578</lpage>. <pub-id pub-id-type="doi">10.1038/s41380-019-0600-4</pub-id>
</citation>
</ref>
<ref id="B49">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tsetsos</surname>
<given-names>F. A.-O. X.</given-names>
</name>
<name>
<surname>Yu</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Sul</surname>
<given-names>J. H.</given-names>
</name>
<name>
<surname>Huang</surname>
<given-names>A. Y.</given-names>
</name>
<name>
<surname>Illmann</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Osiecki</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2024</year>). <article-title>Synaptic processes and immune-related pathways implicated in Tourette syndrome</article-title>. <source>Transl. Psychiatry.</source> <volume>18</volume>. <pub-id pub-id-type="doi">10.1038/s41537-024-00156-7</pub-id>
</citation>
</ref>
<ref id="B50">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Widomska</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>De Witte</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Buitelaar</surname>
<given-names>J. A.-O.</given-names>
</name>
<name>
<surname>Glennon</surname>
<given-names>J. A.-O.</given-names>
</name>
<name>
<surname>Poelmans</surname>
<given-names>G.</given-names>
</name>
</person-group> (<year>2023</year>). <article-title>Molecular andscape of ourette&#x27;s isorder</article-title>. <source>Int. J. Mol. Sci.</source> <volume>24</volume>, <fpage>1428</fpage>. <comment>LID - 10.3390/ijms24021428 [doi] LID - 1428. (1422-0067 (Electronic)). From</comment>. <pub-id pub-id-type="doi">10.3390/ijms24021428</pub-id>
</citation>
</ref>
<ref id="B51">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Xi</surname>
<given-names>L. A.-O.</given-names>
</name>
<name>
<surname>Zhou</surname>
<given-names>F. A.-O. X.</given-names>
</name>
<name>
<surname>Ji</surname>
<given-names>W. A.-O.</given-names>
</name>
<name>
<surname>Zhu</surname>
<given-names>W. A-O. X.</given-names>
</name>
<name>
<surname>Ruan</surname>
<given-names>J. A.-O.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>Y. A.-O.</given-names>
</name>
<etal/>
</person-group> (<year>2022</year>). <article-title>Potential lasma etabolic iomarkers of ourette yndrome iscovery ased on ntegrated ontargeted and argeted etabolomics creening lasma etabolic iomarkers of TS</article-title>. <source>Evid Based Complement Alternat Med</source> <volume>2022</volume>, <fpage>1741</fpage>&#x2013;<lpage>427X</lpage>. <pub-id pub-id-type="doi">10.1155/2022/5080282</pub-id>
</citation>
</ref>
<ref id="B52">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Xiao</surname>
<given-names>L. J.</given-names>
</name>
<name>
<surname>Tao</surname>
<given-names>R.</given-names>
</name>
</person-group> (<year>2017</year>). <source>Traditional Chinese edicine (TCM) therapy</source>, <fpage>0065</fpage>&#x2013;<lpage>2598</lpage>.</citation>
</ref>
<ref id="B53">
<citation citation-type="web">
<person-group person-group-type="author">
<name>
<surname>Zhou</surname>
<given-names>Z. A-O.</given-names>
</name>
<name>
<surname>Chen</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Chen</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Lin</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Chen</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Jin</surname>
<given-names>S.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>Applications of network pharmacology in traditional Chinese medicine research</article-title>, <volume>2020</volume>, <fpage>1741</fpage>&#x2013;<lpage>427X</lpage>. <pub-id pub-id-type="doi">10.1155/2020/1646905</pub-id>
</citation>
</ref>
<ref id="B54">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zingale</surname>
<given-names>V. D.</given-names>
</name>
<name>
<surname>Gugliandolo</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Mazzon</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>MiR-155: n mportant egulator of euroinflammation</article-title>. <source>Int J Mol Sci</source> <volume>23</volume> (<issue>1</issue>), <fpage>90</fpage>. <pub-id pub-id-type="doi">10.3390/ijms23010090</pub-id>
</citation>
</ref>
</ref-list>
</back>
</article>