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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Pharmacol.</journal-id>
<journal-title>Frontiers in Pharmacology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Pharmacol.</abbrev-journal-title>
<issn pub-type="epub">1663-9812</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">743210</article-id>
<article-id pub-id-type="doi">10.3389/fphar.2022.743210</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Pharmacology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Text Mining-Based Drug Discovery for Connective Tissue Disease&#x2013;Associated Pulmonary Arterial Hypertension</article-title>
<alt-title alt-title-type="left-running-head">Tan et&#x20;al.</alt-title>
<alt-title alt-title-type="right-running-head">Drug Discovery for CTD-PAH</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Tan</surname>
<given-names>Jiang-Shan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="fn" rid="fn1">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1528404/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hu</surname>
<given-names>Song</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="fn" rid="fn1">
<sup>&#x2020;</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Guo</surname>
<given-names>Ting-Ting</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Hua</surname>
<given-names>Lu</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/565741/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Wang</surname>
<given-names>Xiao-Jian</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/567009/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Key Laboratory of Pulmonary Vascular Medicine</institution>, <institution>State Key Laboratory of Cardiovascular Disease</institution>, <institution>Center for Respiratory and Pulmonary Vascular Diseases</institution>, <institution>National Clinical Research Center of Cardiovascular Diseases</institution>, <institution>National Center for Cardiovascular Diseases</institution>, <institution>Department of Cardiology</institution>, <institution>Fuwai Hospital</institution>, <institution>Chinese Academy of Medical Sciences and Peking Union Medical College</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Key Laboratory of Pulmonary Vascular Medicine</institution>, <institution>State Key Laboratory of Cardiovascular Disease</institution>, <institution>Center for Respiratory and Pulmonary Vascular Diseases</institution>, <institution>National Center for Cardiovascular Diseases</institution>, <institution>Fuwai Hospital</institution>, <institution>Chinese Academy of Medical Sciences and Peking Union Medical College</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/27317/overview">Ekaterini Chatzaki</ext-link>, Democritus University of Thrace, Greece</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/388786/overview">Akylbek Sydykov</ext-link>, University of Giessen, Germany</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/192137/overview">Stylianos Orfanos</ext-link>, National and Kapodistrian University of Athens, Greece</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Lu Hua, <email>ethannan@126.com</email>; Xiao-Jian Wang, <email>wang_xiaojian@vip.163.com</email>
</corresp>
<fn fn-type="equal" id="fn1">
<label>
<sup>&#x2020;</sup>
</label>
<p>These authors have contributed equally to this work and share first authorship</p>
</fn>
<fn fn-type="other">
<p>This article was submitted to Respiratory Pharmacology, a section of the journal Frontiers in Pharmacology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>18</day>
<month>03</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>13</volume>
<elocation-id>743210</elocation-id>
<history>
<date date-type="received">
<day>17</day>
<month>07</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>24</day>
<month>02</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Tan, Hu, Guo, Hua and Wang.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Tan, Hu, Guo, Hua and Wang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these&#x20;terms.</p>
</license>
</permissions>
<abstract>
<p>
<bold>Background:</bold> The current medical treatments for connective tissue disease&#x2013;associated pulmonary arterial hypertension (CTD-PAH) do not show favorable efficiency for all patients, and identification of novel drugs is desired.</p>
<p>
<bold>Methods:</bold> Text mining was performed to obtain CTD- and PAH-related gene sets, and the intersection of the two gene sets was analyzed for functional enrichment through DAVID. The protein&#x2013;protein interaction network of the overlapping genes and the significant gene modules were determined using STRING. The enriched candidate genes were further analyzed by Drug Gene Interaction database to identify drugs with potential therapeutic effects on CTD-PAH.</p>
<p>
<bold>Results:</bold> Based on text mining analysis, 179 genes related to CTD and PAH were identified. Through enrichment analysis of the genes, 20 genes representing six pathways were obtained. To further narrow the scope of potential existing drugs, we selected targeted drugs with a Query Score &#x2265;5 and Interaction Score &#x2265;1. Finally, 13 drugs targeting the six genes were selected as candidate drugs, which were divided into four drug&#x2013;gene interaction types, and 12 of them had initial drug indications approved by the FDA. The potential gene targets of the drugs on this list are IL-6 (one drug) and IL-1&#x3b2; (two drugs), MMP9 (one drug), VEGFA (three drugs), TGFB1 (one drug), and EGFR (five drugs). These drugs might be used to treat CTD-PAH.</p>
<p>
<bold>Conclusion:</bold> We identified 13 drugs targeting six genes that may have potential therapeutic effects on CTD-PAH.</p>
</abstract>
<kwd-group>
<kwd>text mining</kwd>
<kwd>connective tissue disease</kwd>
<kwd>pulmonary arterial hypertension</kwd>
<kwd>drug discovery</kwd>
<kwd>drugs</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Pulmonary arterial hypertension (PAH) is a life-threatening complication of connective tissue disease (CTD) and has been described in patients with systemic sclerosis (SSc), systemic lupus erythematosus (SLE), mixed CTD (MCTD), primary Sj&#xf6;gren&#x2019;s syndrome, and rheumatoid arthritis (<xref ref-type="bibr" rid="B32">Sung and Chung, 2015</xref>). In Western countries, CTD-associated pulmonary arterial hypertension (CTD-PAH) was the second leading cause of PAH (25%), and almost 75% of CTD-PAH was SSc-related; the 3-year survival within this population was only 56% (<xref ref-type="bibr" rid="B14">Hachulla et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B34">Thakkar and Lau, 2016</xref>). Similarly, CTD-PAH was the third most common type of PAH (20%) in China (<xref ref-type="bibr" rid="B15">Jiang et&#x20;al., 2012</xref>), and more than half of these cases were SLE-related (58.4%) (<xref ref-type="bibr" rid="B43">Zhao et&#x20;al., 2017</xref>). The estimated 1-year and 3-years survival rates were 85.4 and 53.6%, respectively (<xref ref-type="bibr" rid="B42">Zhang et&#x20;al., 2011</xref>). Recently, PAH-targeted drugs were used in patients with CTD-PAH, but the effect was unsatisfactory (<xref ref-type="bibr" rid="B10">Fisher et&#x20;al., 2006</xref>; <xref ref-type="bibr" rid="B42">Zhang et&#x20;al., 2011</xref>). Immunosuppressive therapy is an indispensable part of treatment for CTD-PAH as well (<xref ref-type="bibr" rid="B20">Kato et&#x20;al., 2020</xref>). The administration of immunosuppressive agents, including systemic glucocorticoids and intravenous cyclophosphamide, may improve the clinical status of PAH patients who have SLE, MCTD, and Sj&#xf6;gren&#x2019;s syndrome; however, patients with SSc-PAH do not respond well to immunosuppressive therapy (<xref ref-type="bibr" rid="B30">Sanchez et&#x20;al., 2006</xref>; <xref ref-type="bibr" rid="B19">Kato and Atsumi, 2018</xref>; <xref ref-type="bibr" rid="B20">Kato et&#x20;al., 2020</xref>).</p>
<p>As mentioned above, an optimal regimen of treatment has not been established, and existing drugs do not show favorable efficiency for all CTD-PAH patients; therefore, novel drugs for this condition are needed. Drug discovery has long been a time- and capital-intensive process, and an unpredictable return on investment may result. Nevertheless, drug repurposing serves as a quicker, and a less costly method to expand indications for already approved drugs (<xref ref-type="bibr" rid="B24">Moosavinasab et&#x20;al., 2016</xref>). A successful example is Pfizer&#x2019;s sildenafil, which was originally designed for the treatment of angina but then repositioned to treat erectile dysfunction in 1998 (<xref ref-type="bibr" rid="B26">Novac, 2013</xref>). Text mining is a feasible strategy to discover drugs with new treatment potential (<xref ref-type="bibr" rid="B1">Andronis et&#x20;al., 2011</xref>). Based on the available literature and biomedical databases, combined with analytical tools, text mining aims to explore drugs with potential value for the treatment of targeted diseases among the currently available drugs. In this study, we discovered that some existing drugs may be used for CTD-PAH treatment by text mining.</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>Materials and Methods</title>
<sec id="s2-1">
<title>Text Mining</title>
<p>Text mining was performed to obtain disease&#x2013;gene associations automatically based on a substantial number of biological studies, which was performed by querying the pubmed2ensembl database though <ext-link ext-link-type="uri" xlink:href="http://pubmed2ensembl.ls.manchester.ac.uk/">http://pubmed2ensembl.ls.manchester.ac.uk/</ext-link>. The pubmed2ensembl is an extension of the BioMart system, which contains more than 2,000,000 articles in PubMed and almost 150,000 genes in Ensembl (<xref ref-type="bibr" rid="B3">Baran et&#x20;al., 2011</xref>). With pubmed2ensembl, we can extract all of the associated genes using search strings from the available biological literature when we perform a query. In the present study, we performed two queries: one with the concept &#x201c;pulmonary arterial hypertension&#x201d; (PAH) and another with the concept &#x201c;connective tissue diseases&#x201d; (CTD). All unique genes were extracted from each result. Then, we conducted a genetic screen to identify intersecting genes that participate in both PAH and&#x20;CTD.</p>
</sec>
<sec id="s2-2">
<title>Gene Ontology and Pathway Enrichment Analysis</title>
<p>The Gene Ontology (GO) analysis includes three main branches: cellular component (CC), molecular function (MF), and biological process (BP). The Kyoto Encyclopedia of Genes and Genomes (KEGG) (<xref ref-type="bibr" rid="B18">Kanehisa and Goto, 2000</xref>) is an open access and systematic analysis database from Japan that specializes in annotation and pathway enrichment analysis. The GO analysis and KEGG enrichment analysis of candidate overlapping genes were performed with DAVID (<ext-link ext-link-type="uri" xlink:href="https://david.ncifcrf.gov/">https://david.ncifcrf.gov/</ext-link>), an online gene functional annotation tool with visualization and gene attributes. A <italic>p</italic> value &#x3c;0.05 was required for statistical significance as the threshold.</p>
</sec>
<sec id="s2-3">
<title>Protein Interaction and Module Analysis</title>
<p>We performed an analysis on the protein&#x2013;protein interaction (PPI) network of the candidate overlapping genes using the web-based tool STRING (version 11.0, <ext-link ext-link-type="uri" xlink:href="http://string-db.org/">http://string-db.org/</ext-link>) (<xref ref-type="bibr" rid="B33">Szklarczyk et&#x20;al., 2015</xref>). First, the overlapping genes were uploaded into the STRING website with a significance threshold of a minimum interaction score &#x3e;0.9 (high confidence). Then, the TSV format file of PPI was downloaded, and further analysis was performed with Cytoscape software. STRING and the Molecular Complex Detection (MCODE) app were built in Cytoscape and used to classify the significant gene modules (clusters). The parameters in MCODE were set by default. Finally, the drug&#x2013;gene interaction analysis was performed based on the genes in the gene modules.</p>
</sec>
<sec id="s2-4">
<title>Drug&#x2013;Gene Interactions</title>
<p>The Drug Gene Interaction database (<ext-link ext-link-type="uri" xlink:href="http://www.dgidb.org">http://www.dgidb.org</ext-link>) was used for further analysis of drug&#x2013;gene interactions based on the final list of genes, which could be used as potential therapeutic targets in a search for existing drugs (<xref ref-type="bibr" rid="B38">Wagner et&#x20;al., 2016</xref>). Due to a large number of predicted drugs, we chose the targeted drugs with stringent criteria: Query Score &#x2265;5 and Interaction Score &#x2265;1. These candidate drugs targeting the genes/pathways relevant to PAH and CTD may represent potential treatments.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec id="s3-1">
<title>Results of Text Mining, GO, and Pathway Enrichment Analysis</title>
<p>The overall data mining strategy is described in <xref ref-type="fig" rid="F1">Figure&#x20;1</xref>. From text mining searches, 797 genes were related to PAH, 441 genes were related to CTD, and 179 genes overlapped between PAH and CTD (<xref ref-type="fig" rid="F2">Figure&#x20;2</xref>). The GO analysis was classified into three functional categories: BP, CC, and MF (in <xref ref-type="fig" rid="F3">Figure&#x20;3</xref>, the top six significant enrichment terms for BP, CC, and MF and the top 20 KEGG signal pathways of the overlapping genes are shown). In the BP term, GO analysis showed that these common genes were mainly enriched in the regulation of response to organic substance, cell proliferation, and positive regulation of response to stimulus. In the CC term, these common genes were significantly enriched in the extracellular region, extracellular region part, and extracellular space. In the MF term, these common genes were mainly enriched in receptor binding, identical protein binding, and enzyme binding. Signaling pathway enrichment showed that these common genes were mainly involved in cancer, cytokine&#x2013;cytokine receptor interaction, and the PI3K-Akt signaling pathway (<xref ref-type="fig" rid="F4">Figure&#x20;4</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Overall text mining strategy. pubmed2ensembl was used to identify connective tissue disease&#x2013;associated pulmonary arterial hypertension (CTD-PAH)&#x2013;related gene sets, and the overlapping genes of the two gene sets were analyzed for enrichment by DAVID. The protein&#x2013;protein interaction network of the overlapping genes and the enriched candidate genes were shown using STRING. The final enriched candidate genes for further analysis of drug&#x2013;gene interactions by DGIdb to determine dugs with potential therapeutic effects of CTD-PAH. GO, Gene Ontology; DGIdb, Drug Gene Interaction database.</p>
</caption>
<graphic xlink:href="fphar-13-743210-g001.tif"/>
</fig>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>The results of text mining. A total of 797 genes were related to PAH, 441 genes were related to CTD, and 179 genes overlapped between PAH and CTD. PAH, pulmonary arterial hypertension; CTD, connective tissue diseases.</p>
</caption>
<graphic xlink:href="fphar-13-743210-g002.tif"/>
</fig>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>The results of GO enrichment analysis. The top six significant enrichment terms of biological process, cellular component, and molecular function of overlapping genes are shown. GO, Gene Ontology.</p>
</caption>
<graphic xlink:href="fphar-13-743210-g003.tif"/>
</fig>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>The results of KEGG enrichment analysis. A total of 20 KEGG signaling pathways of overlapping genes are shown. KEGG, Kyoto Encyclopedia of Genes and Genomes.</p>
</caption>
<graphic xlink:href="fphar-13-743210-g004.tif"/>
</fig>
</sec>
<sec id="s3-2">
<title>Protein Interaction and Module Analysis</title>
<p>We then uploaded the 179 genes to the STRING website to construct the PPI networks. After excluding 30 genes with low confidence (score &#x3c;0.9), we identified 149 genes/nodes with score &#x3e;0.9 (high confidence) and 1,205 edges in the construction of the PPI networks (<xref ref-type="fig" rid="F5">Figure&#x20;5A</xref>). By using the MCODE application, we clustered two significant gene modules. Module 1 consisted of 25 genes/nodes and 180 edges (<xref ref-type="fig" rid="F5">Figure&#x20;5B</xref>), while module 2 was made up of 20 genes/nodes and 104 edges (<xref ref-type="fig" rid="F5">Figure&#x20;5C</xref>).</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Protein&#x2013;protein interaction (PPI) network analysis. PPI of 149 genes/nodes with scores &#x3e;0.9 (high confidence) and 1,205 edges are shown in <bold>(A)</bold>, and 30 genes have been excluded because of low confidence. For the most significant gene modules, two significant gene modules were clustered by using the MCODE application. Module 1 consisted of 25 genes/nodes and 180 edges <bold>(B)</bold>, and module 2 was made up of 20 genes/nodes and 104 edges <bold>(C)</bold>.</p>
</caption>
<graphic xlink:href="fphar-13-743210-g005.tif"/>
</fig>
</sec>
<sec id="s3-3">
<title>Drug&#x2013;Gene Interaction and Functional Analysis of Potential Genes</title>
<p>To simplify our module and identify high-efficiency drugs to treat CTD-PAH, we chose module 2 for further analysis. The 20 genes in module 2 were selected for drug&#x2013;gene interaction analysis. A total of 12 genes were targeted by 76 potential existing drugs, which were divided into 28 drug&#x2013;gene interaction types, and all had initial drug indications (<xref ref-type="sec" rid="s10">Supplementary Table S1</xref>). The potential gene targets of the drugs on this list are SERPINE1, IL6, IL1B, MMP9, MPO, VEGFA, VCAM1, ALB, ESR1, CREB1, TGFB1, and EGFR. Almost half of the drugs (36 of the 76) target estrogen receptor alpha (ESR1) and interact with estrogen receptor alpha in an inhibitory or antagonistic manner (<xref ref-type="sec" rid="s10">Supplementary Table S1</xref>). To further narrow the scope of the potential existing drugs, we selected targeted drugs with Query Score &#x2265;5 and Interaction Score &#x2265;1 in the final results (<xref ref-type="table" rid="T1">Table&#x20;1</xref>). A total of six genes were targeted by 13 potential existing drugs, which were divided into four drug&#x2013;gene interaction types, and 12 of them had initial drug indications approved by the FDA (<xref ref-type="table" rid="T1">Table&#x20;1</xref>). The potential gene targets of the drugs on this list are IL6 (one drug), IL1B (two drugs), MMP9 (one drug), VEGFA (three drugs), TGFB1 (one drug), and EGFR (five drugs).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>The available drugs that can target six candidate&#x20;genes.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">ID</th>
<th align="center">Drug</th>
<th align="center">Gene</th>
<th align="center">Interaction types</th>
<th align="center">Administration</th>
<th align="center">Approved use by the FDA</th>
<th align="center">Sources</th>
<th align="center">Query score</th>
<th align="center">Interaction score</th>
<th align="center">PubMed ID</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">1</td>
<td align="left">Siltuximab</td>
<td align="left">IL6</td>
<td align="left">Antagonist&#x7c;antibody&#x7c;inhibitor</td>
<td align="left">Intravenous</td>
<td align="left">Multicentric Castleman&#x2019;s disease</td>
<td align="left">DrugBank&#x7c;MyCancerGenome</td>
<td align="char" char=".">21.78</td>
<td align="char" char=".">8.61</td>
<td align="char" char=".">88,23,310</td>
</tr>
<tr>
<td align="left">2</td>
<td align="left">Canakinumab</td>
<td align="left">IL1B</td>
<td align="left">Inhibitor&#x7c;binder&#x7c;antibody</td>
<td align="left">Subcutaneous</td>
<td align="left">Periodic fever syndromes; active Still&#x2019;s disease</td>
<td align="left">DrugBank&#x7c;MyCancerGenome</td>
<td align="char" char=".">30.49</td>
<td align="char" char=".">8.46</td>
<td align="char" char=".">19,169,963</td>
</tr>
<tr>
<td align="left">3</td>
<td align="left">Rilonacept</td>
<td align="left">IL1B</td>
<td align="left">Binder&#x7c;inhibitor</td>
<td align="left">Subcutaneous</td>
<td align="left">Cryopyrin-associated periodic syndrome; recurrent pericarditis</td>
<td align="left">DrugBank&#x7c;ChemblInteractions</td>
<td align="char" char=".">7.26</td>
<td align="char" char=".">2.01</td>
<td align="char" char=".">23,319,019</td>
</tr>
<tr>
<td align="left">4</td>
<td align="left">Glucosamine&#x2a;</td>
<td align="left">MMP9</td>
<td align="left">Antagonist</td>
<td align="left">Oral</td>
<td align="left">&#x2014;</td>
<td align="left">DrugBank</td>
<td align="char" char=".">10.45</td>
<td align="char" char=".">2.96</td>
<td align="char" char=".">12,405,690</td>
</tr>
<tr>
<td align="left">5</td>
<td align="left">Ranibizumab</td>
<td align="left">VEGFA</td>
<td align="left">Inhibitor</td>
<td align="left">Ophthalmic</td>
<td align="left">Neovascular (wet) age-related macular degeneration; macular edema following retinal vein occlusion; diabetic macular edema; diabetic retinopathy; myopic choroidal neovascularization</td>
<td align="left">DrugBank&#x7c;TdgClinicalTrial</td>
<td align="char" char=".">23.96</td>
<td align="char" char=".">6.51</td>
<td align="char" char=".">18,046,235</td>
</tr>
<tr>
<td align="left">6</td>
<td align="left">Pegaptanib Sodium</td>
<td align="left">VEGFA</td>
<td align="left">Antagonist</td>
<td align="left">Ophthalmic</td>
<td align="left">Neovascular (wet) age-related macular degeneration</td>
<td align="left">TdgClinicalTrial&#x7c;ChemblInteractions</td>
<td align="char" char=".">8.71</td>
<td align="char" char=".">2.37</td>
<td align="char" char=".">23,953,100</td>
</tr>
<tr>
<td align="left">7</td>
<td align="left">Aflibercept</td>
<td align="left">VEGFA</td>
<td align="left">Antibody&#x7c;binder&#x7c;inhibitor</td>
<td align="left">Ophthalmic</td>
<td align="left">Neovascular (wet) age-related macular degeneration; macular edema following retinal vein occlusion; diabetic macular edema; Diabetic retinopathy</td>
<td align="left">DrugBank&#x7c;MyCancerGenome</td>
<td align="char" char=".">6.97</td>
<td align="char" char=".">1.89</td>
<td align="char" char=".">22,813,448</td>
</tr>
<tr>
<td align="left">8</td>
<td align="left">Hyaluronidase</td>
<td align="left">TGFB1</td>
<td align="left">Inhibitor</td>
<td align="left">Subcutaneous</td>
<td align="left">As an adjuvant</td>
<td align="left">DrugBank</td>
<td align="char" char=".">21.78</td>
<td align="char" char=".">7.1</td>
<td align="char" char=".">9,435,505</td>
</tr>
<tr>
<td align="left">9</td>
<td align="left">Afatinib</td>
<td align="left">EGFR</td>
<td align="left">Inhibitor</td>
<td align="left">Oral</td>
<td align="left">Non&#x2013;small-cell lung cancer</td>
<td align="left">DrugBank&#x7c;FDA</td>
<td align="char" char=".">57.5</td>
<td align="char" char=".">4.14</td>
<td align="char" char=".">26,619,011</td>
</tr>
<tr>
<td align="left">10</td>
<td align="left">Osimertinib</td>
<td align="left">EGFR</td>
<td align="left">Inhibitor</td>
<td align="left">Oral</td>
<td align="left">Non&#x2013;small-cell lung cancer</td>
<td align="left">DrugBank&#x7c;FDA</td>
<td align="char" char=".">31.36</td>
<td align="char" char=".">2.26</td>
<td align="char" char=".">31,825,714</td>
</tr>
<tr>
<td align="left">11</td>
<td align="left">Dacomitinib</td>
<td align="left">EGFR</td>
<td align="left">Inhibitor</td>
<td align="left">Oral</td>
<td align="left">Non&#x2013;small-cell lung cancer</td>
<td align="left">DrugBankCKB&#x7c;FDA</td>
<td align="char" char=".">26.13</td>
<td align="char" char=".">1.88</td>
<td align="char" char=".">24,857,124</td>
</tr>
<tr>
<td align="left">12</td>
<td align="left">Necitumumab</td>
<td align="left">EGFR</td>
<td align="left">Antagonist&#x7c;inhibitor&#x7c;antibody</td>
<td align="left">Intravenous</td>
<td align="left">Non&#x2013;small-cell lung cancer</td>
<td align="left">TALC&#x7c;DrugBank</td>
<td align="char" char=".">17.42</td>
<td align="char" char=".">1.26</td>
<td align="char" char=".">20,197,484</td>
</tr>
<tr>
<td align="left">13</td>
<td align="left">Erlotinib</td>
<td align="left">EGFR</td>
<td align="left">Antagonist&#x7c;inhibitor</td>
<td align="left">Oral</td>
<td align="left">Non&#x2013;small-cell lung cancer; Pancreatic cancer</td>
<td align="left">DrugBank&#x7c;FDA</td>
<td align="char" char=".">14.63</td>
<td align="char" char=".">1.05</td>
<td align="char" char=".">26,619,011</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>FDA, Food and Drug Administration.</p>
</fn>
<fn>
<p>&#x2a;This drug has not yet been approved by the FDA (indicated use being investigated).</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>CTD-PAH shares similar pathophysiological characteristics with other types of PAH, and dysfunction of multiple cells and molecular processes may contribute to vasoconstriction and inflammation of arterioles, which results in progressive increases in pulmonary vascular resistance and right ventricular afterload, heart failure, and even death (<xref ref-type="bibr" rid="B36">Thenappan et&#x20;al., 2018b</xref>). Currently, all PAH-targeted drugs mainly target pulmonary vasoconstriction rather than vascular remodeling, which underlies the basic pathological characteristics of PAH. By performing text mining, we found six genes of interest and 13 potential drugs for the treatment of CTD-PAH. Notably, the main drivers of vascular remodeling, including endothelial cells (ECs) or pulmonary artery smooth muscle cells (PASMCs), were implicated in the identified target gene&#x2013;related signaling pathway.</p>
<p>Immunological disturbance and inflammatory mechanisms play a central role during the development of PAH in CTD (<xref ref-type="bibr" rid="B9">Dorfm&#xfc;ller et&#x20;al., 2003</xref>). Elevated serum levels of some proinflammatory cytokines, such as interleukin (IL)-1 and IL-6, were reported in CTD-PAH patients (<xref ref-type="bibr" rid="B9">Dorfm&#xfc;ller et&#x20;al., 2003</xref>). The downregulation of IL-1&#x3b2; and IL-6 expressions could inhibit the development of PAH by suppressing the proliferation and migration of PASMCs in rats (<xref ref-type="bibr" rid="B27">Ou et&#x20;al., 2020</xref>). A study also demonstrated that the expression of IL-6 was increased in the lung, and IL-6 blockade by the monoclonal anti&#x2013;IL-6 receptor antibody MR16-1 could ameliorate the pulmonary hypertension (PH) of pristane/hypoxia mice (a novel mouse model of PH reflecting the pathological features of CTD-PAH) (<xref ref-type="bibr" rid="B25">Mori et&#x20;al., 2020</xref>). The IL-6 signaling pathway is a promising candidate in the treatment of CTD-PAH, and the use of tocilizumab, an anti-IL-6 receptor antibody was proven to result in clinical improvements in some cases of CTD-PAH (<xref ref-type="bibr" rid="B2">Arita et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B11">Furuya et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B16">Kadavath et&#x20;al., 2014</xref>). Although siltuximab (targeting IL-6) seems to have a similar effect on CTD-PAH, the related evidence is limited. As for IL-1&#x3b2; blockade, whether it has a positive effect on CTD-PAH requires more evidence.</p>
<p>Pulmonary vascular remodeling is initiated by remodeling of the extracellular matrix resulting from the imbalance of proteolytic enzymes and their inhibitors (<xref ref-type="bibr" rid="B35">Thenappan et&#x20;al., 2018a</xref>). Remodeling of the ECM of the pulmonary artery occurs in the early stage of PAH pathogenesis and even precedes the hemodynamic changes in pulmonary circulation (<xref ref-type="bibr" rid="B35">Thenappan et&#x20;al., 2018a</xref>). As an important type of proteolytic enzyme, matrix metalloproteinase (MMP) shows an increase in activity associated with the proliferation and migration of PASMCs and intimal thickening during the development of PAH (<xref ref-type="bibr" rid="B6">Chelladurai et&#x20;al., 2012</xref>). In the MMP family, the upregulation of gelatinases (MMP-2 and MMP-9) was identified in monocrotaline (MCT)&#x2013;induced or hypoxia-induced mouse model of PH, and gelatinases were considered possible therapeutic targets for the treatment of PAH (<xref ref-type="bibr" rid="B13">George and D&#x27;Armiento, 2011</xref>; <xref ref-type="bibr" rid="B22">Liu et&#x20;al., 2018</xref>). We found the possible use of glucosamine, an antagonist of MMP9, in CTD-PAH, but most studies have focused on its clinical use in patients with osteoarthritis thus far. Moreover, contraindications and drug interactions involving glucosamine use are uncommon (<xref ref-type="bibr" rid="B8">Dahmer and Schiller, 2008</xref>; <xref ref-type="bibr" rid="B4">Bruy&#xe8;re et&#x20;al., 2016</xref>), therefore, the possible use of glucosamine should be explored.</p>
<p>The potential effect of epidermal growth factor receptor (EGFR)&#x2013;mediated survival of PASMCs has led researchers to test the efficacy of selective targeting EGFR in the PH animal model (<xref ref-type="bibr" rid="B23">Merklinger et&#x20;al., 2005</xref>). <xref ref-type="bibr" rid="B7">Dahal et&#x20;al. (2010)</xref> found that erlotinib (one of the first generation EGFR tyrosine kinase inhibitors; it is also the drug we suggested in <xref ref-type="table" rid="T1">Table&#x20;1</xref>) showed therapeutic benefit in rats with MCT-induced PH, but it did not show therapeutic efficacy in chronic hypoxic mice model. The reason why partial therapeutic benefit was observed may be because different mechanisms were involved in these two commonly used animal models with respect to the involvement of EGF signaling. Most importantly, multiple growth factors, including EGF, platelet-derived growth factor, and fibroblast growth factor, are all involved in PASMC proliferation in response to hypoxia. Therefore, no significant therapeutic efficacy was observed in chronic hypoxic mice. Notably, no significant alteration of EGFR expression in the lung tissues from patients with idiopathic PAH was also reported (<xref ref-type="bibr" rid="B7">Dahal et&#x20;al., 2010</xref>). In Dahal&#x2019;s study, only patients with advanced-stage idiopathic PAH were enrolled. Therefore, as described in their study, the important role of EGF signaling in the early stage of PAH development could not be excluded. However, the second generation of EGFR tyrosine kinase inhibitors and a new pan-EGFR inhibitor, dacomitinib, showed a significant inhibitory effect on pulmonary vascular remodeling and attenuated pulmonary artery pressure and right ventricular hypertrophy in both MCT and hypoxia-induced mice model of PH (<xref ref-type="bibr" rid="B39">Yu et&#x20;al., 2019</xref>). Other drugs that target EGFR in our list (necitumumab, afatinib, and osimertinib) have not yet been validated. The therapeutic effect of EGFR, a promising target, is required to be elucidated in the future.</p>
<p>Disturbed production of vasoactive, vasoconstrictive, and proliferative mediators from ECs may affect vascular tone and promote vascular remodeling (<xref ref-type="bibr" rid="B41">Zanatta et&#x20;al., 2019</xref>). The vascular endothelial growth factor (VEGF) is the main angiogenic factor and is indispensable for the process of normal angiogenesis. The overexpression of VEGF is associated with proliferation of ECs in severe PAH (<xref ref-type="bibr" rid="B28">Sakao and Tatsumi, 2011</xref>). VEGF and its receptors showed increased expressions in animal models (hypoxia or MCT-induced PH), and elevated levels of plasma VEGF were also discovered in PAH patients (<xref ref-type="bibr" rid="B37">Voelkel and Gomez-Arroyo, 2014</xref>). However, many studies have revealed that combined with a second hit (high shear stress or chronic hypoxia), VEGF receptor blockade can drive the emergence of apoptosis-resistant ECs with the potential for hyperproliferation, and angio-obliterative PAH may form as a result (<xref ref-type="bibr" rid="B29">Sakao et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B37">Voelkel and Gomez-Arroyo, 2014</xref>). VEGFA is the most abundant isomer of VEGF in humans and is currently the main target of anti-VEGF treatment. It is unknown whether VEGF receptor antagonists would contribute to the development of PAH, but two patients developed PH were reported in patients who had ovarian cancer received bevacizumab (recombinant humanized monoclonal antibody against VEGF-A) (<xref ref-type="bibr" rid="B12">Garcia et&#x20;al., 2008</xref>). Therefore, VEGF receptor antagonists may not be applicable in the treatment of&#x20;PAH.</p>
<p>The predominant isoform of transforming growth factor &#x3b2; (TGF&#x3b2;) in humans is TGF&#x3b2;-1, and excessive TGF&#x3b2;-1 signaling is a characteristic of PAH (<xref ref-type="bibr" rid="B31">Sturrock et&#x20;al., 2006</xref>; <xref ref-type="bibr" rid="B17">Kajdaniuk et&#x20;al., 2013</xref>; <xref ref-type="bibr" rid="B5">Calvier et&#x20;al., 2019</xref>). By reducing the expression of PTEN and increasing the activation of PI3K/AKT, TGF&#x3b2;-1 promotes the proliferation and decreases the apoptosis of PASMCs in lung tissue (<xref ref-type="bibr" rid="B21">Liu et&#x20;al., 2016</xref>). Apoptosis-resistant PASMCs could promote progressive narrowing of the vascular lumen and excessive accumulation of ECM components, which reduced vascular compliance (<xref ref-type="bibr" rid="B36">Thenappan et&#x20;al., 2018b</xref>). Selective trapping of the TGF&#x3b2;-1 ligand has been demonstrated to improve hemodynamics, pulmonary vessel remodeling, and survival in mice model (<xref ref-type="bibr" rid="B40">Yung et&#x20;al., 2016</xref>). Although hyaluronidase can target TGF&#x3b2;-1, the indication is as an adjuvant to increase the absorption of other drugs in local use (<xref ref-type="table" rid="T1">Table&#x20;1</xref>). Moreover, hyaluronidase cannot be delivered to the lung by the venous system because the enzyme is rapidly inactivated following intravenous administration. Thus, hyaluronidase is not applicable in the clinical treatment of PAH, but a suitable formulation for delivery may be an alternative consideration.</p>
<p>The first limitation of this study is related to the databases we used. Not all the drug&#x2013;gene interactions are fully clarified in the present databases. Therefore, the analysis may be more accurate as the databases are updated. Additionally, some candidate genes for targeting might have generalized effects that may not always be desirable. Thus, lack of experiments to validate the targets and drugs that we found is the other limitation of the present study. Experiments and clinical trials are required before these drugs are approved for clinical&#x20;use.</p>
<p>As discussed above, some drugs that we found (<xref ref-type="table" rid="T2">Table&#x20;2</xref>) may have unfavorable effects depending on the current findings. For example, drugs that target VEGFA may induce PAH, erlotinib (target EGFR) was ineffective in animal model, and hyaluronidase (target TGF&#x3b2;-1) could not be delivered to lung tissue in its present formulation. With the evolution and improvement of database and analytic tools, this method of data mining will promote drug discovery in CTD-PAH therapy.</p>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Comprehensive recommendation of promising drugs for the treatment of CTD-PAH.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Gene targets</th>
<th align="center">Reported in CTD animal model</th>
<th align="center">Reported in PAH animal model</th>
<th align="center">Proposed drugs by text-mining</th>
<th align="center">Tested in clinical trials for CTD or PAH</th>
<th align="center">Recommendation (candidate for therapy of CTD-PAH)</th>
<th align="center">References (PubMed ID)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">IL6</td>
<td align="left">Yes</td>
<td align="left">Yes</td>
<td align="left">Siltuximab</td>
<td align="left">No</td>
<td align="left">High possibility</td>
<td align="char" char=".">32,522,898</td>
</tr>
<tr>
<td align="left">IL1B</td>
<td align="left">Yes</td>
<td align="left">Yes</td>
<td align="left">Canakinumab; Rilonacept</td>
<td align="left">No</td>
<td align="left">High possibility</td>
<td align="char" char=".">32,712,318</td>
</tr>
<tr>
<td align="left">MMP9</td>
<td align="left">Yes</td>
<td align="left">Yes</td>
<td align="left">Glucosamine</td>
<td align="left">No</td>
<td align="left">High possibility</td>
<td align="char" char=".">21,063,214</td>
</tr>
<tr>
<td align="left">VEGFA</td>
<td align="left">Yes</td>
<td align="left">Yes</td>
<td align="left">Ranibizumab; Pegaptanib Sodium; Aflibercept</td>
<td align="left">No</td>
<td align="left">Uncertain (the drugs targeting VEGFA may induce PAH)</td>
<td align="char" char=".">24,932,885</td>
</tr>
<tr>
<td align="left">TGFB1</td>
<td align="left">NO</td>
<td align="left">Yes</td>
<td align="left">Hyaluronidase</td>
<td align="left">No</td>
<td align="left">Less possibility (it could not be delivered to the lungs in its present formulation)</td>
<td align="char" char=".">27,115,515</td>
</tr>
<tr>
<td align="left">EGFR</td>
<td align="left">Yes</td>
<td align="left">Yes</td>
<td align="left">Afatinib; Osimertinib; Dacomitinib; Necitumumab; Erlotinib</td>
<td align="left">No</td>
<td align="left">High possibility (but ineffective result of Erlotinib was reported in an animal model)</td>
<td align="char" char=".">30,753,867</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>CTD, connective tissue disease; PAH, pulmonary arterial hypertension; CTD-PAH, connective tissue disease&#x2013;associated pulmonary arterial hypertension.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>In conclusion, 13 drugs targeting six genes that may have potential therapeutic effects on CTD-PAH were discovered, and none of them has been tested in clinical trials for PAH patients. Drug discovery by performing text mining and pathway analysis can help identify existing drugs that have the potential to treat CTD-PAH.</p>
</sec>
</body>
<back>
<sec id="s5">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="sec" rid="s10">Supplementary Material</xref>, further inquiries can be directed to the corresponding authors.</p>
</sec>
<sec id="s6">
<title>Author Contributions</title>
<p>J-ST, SH, LH, and X-JW designed the study. J-ST, SH, and T-TG performed the data analysis and wrote the manuscript. LH and X-JW revised the manuscript. All authors listed approved for the manuscript for publication.</p>
</sec>
<sec id="s7">
<title>Funding</title>
<p>The study was supported by grants from the Research Project of Clinical Toxicology from the Chinese Society of Toxicology (CST2020CT303), National Clinical Research Center for Cardiovascular Diseases, Fuwai Hospital, Chinese Academy of Medical Sciences (NCRC2020007), and National Natural Science Foundation of China (81870050).</p>
</sec>
<sec sec-type="COI-statement" id="s8">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s9">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors, and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s10">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fphar.2022.743210/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fphar.2022.743210/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Table1.DOCX" id="SM1" mimetype="application/DOCX" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Andronis</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Sharma</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Virvilis</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Deftereos</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Persidis</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Literature Mining, Ontologies and Information Visualization for Drug Repurposing</article-title>. <source>Brief Bioinform</source> <volume>12</volume> (<issue>4</issue>), <fpage>357</fpage>&#x2013;<lpage>368</lpage>. <pub-id pub-id-type="doi">10.1093/bib/bbr005</pub-id> </citation>
</ref>
<ref id="B2">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Arita</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Sakata</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Sudo</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Maeda</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Matsuoka</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Tamai</surname>
<given-names>K.</given-names>
</name>
<etal/>
</person-group> (<year>2010</year>). <article-title>The Efficacy of Tocilizumab in a Patient with Pulmonary Arterial Hypertension Associated with Castleman&#x27;s Disease</article-title>. <source>Heart Vessels</source> <volume>25</volume> (<issue>5</issue>), <fpage>444</fpage>&#x2013;<lpage>447</lpage>. <pub-id pub-id-type="doi">10.1007/s00380-009-1215-5</pub-id> </citation>
</ref>
<ref id="B3">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Baran</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Gerner</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Haeussler</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Nenadic</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Bergman</surname>
<given-names>C. M.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>pubmed2ensembl: a Resource for Mining the Biological Literature on Genes</article-title>. <source>PLoS One</source> <volume>6</volume> (<issue>9</issue>), <fpage>e24716</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0024716</pub-id> </citation>
</ref>
<ref id="B4">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bruy&#xe8;re</surname>
<given-names>O.</given-names>
</name>
<name>
<surname>Altman</surname>
<given-names>R. D.</given-names>
</name>
<name>
<surname>Reginster</surname>
<given-names>J.&#x20;Y.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Efficacy and Safety of Glucosamine Sulfate in the Management of Osteoarthritis: Evidence from Real-Life Setting Trials and Surveys</article-title>. <source>Semin. Arthritis Rheum.</source> <volume>45</volume> (<issue>4 Suppl. l</issue>), <fpage>S12</fpage>&#x2013;<lpage>S17</lpage>. <pub-id pub-id-type="doi">10.1016/j.semarthrit.2015.11.011</pub-id> </citation>
</ref>
<ref id="B5">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Calvier</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Chouvarine</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Legchenko</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Kokeny</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Mozes</surname>
<given-names>M. M.</given-names>
</name>
<name>
<surname>Hansmann</surname>
<given-names>G.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Chronic TGF-&#x3b2;1 Signaling in Pulmonary Arterial Hypertension Induces Sustained Canonical Smad3 Pathways in Vascular Smooth Muscle Cells</article-title>. <source>Am. J.&#x20;Respir. Cel Mol. Biol.</source> <volume>61</volume> (<issue>1</issue>), <fpage>121</fpage>&#x2013;<lpage>123</lpage>. <pub-id pub-id-type="doi">10.1165/rcmb.2018-0275LE</pub-id> </citation>
</ref>
<ref id="B6">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chelladurai</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Seeger</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Pullamsetti</surname>
<given-names>S. S.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Matrix Metalloproteinases and Their Inhibitors in Pulmonary Hypertension</article-title>. <source>Eur. Respir. J.</source> <volume>40</volume> (<issue>3</issue>), <fpage>766</fpage>&#x2013;<lpage>782</lpage>. <pub-id pub-id-type="doi">10.1183/09031936.00209911</pub-id> </citation>
</ref>
<ref id="B7">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Dahal</surname>
<given-names>B. K.</given-names>
</name>
<name>
<surname>Cornitescu</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Tretyn</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Pullamsetti</surname>
<given-names>S. S.</given-names>
</name>
<name>
<surname>Kosanovic</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Dumitrascu</surname>
<given-names>R.</given-names>
</name>
<etal/>
</person-group> (<year>2010</year>). <article-title>Role of Epidermal Growth Factor Inhibition in Experimental Pulmonary Hypertension</article-title>. <source>Am. J.&#x20;Respir. Crit. Care Med.</source> <volume>181</volume> (<issue>2</issue>), <fpage>158</fpage>&#x2013;<lpage>167</lpage>. <pub-id pub-id-type="doi">10.1164/rccm.200811-1682OC</pub-id> </citation>
</ref>
<ref id="B8">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Dahmer</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Schiller</surname>
<given-names>R. M.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>Glucosamine</article-title>. <source>Am. Fam. Physician</source> <volume>78</volume> (<issue>4</issue>), <fpage>471</fpage>&#x2013;<lpage>476</lpage>. </citation>
</ref>
<ref id="B9">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Dorfm&#xfc;ller</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Perros</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Balabanian</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Humbert</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2003</year>). <article-title>Inflammation in Pulmonary Arterial Hypertension</article-title>. <source>Eur. Respir. J.</source> <volume>22</volume> (<issue>2</issue>), <fpage>358</fpage>&#x2013;<lpage>363</lpage>. <pub-id pub-id-type="doi">10.1183/09031936.03.00038903</pub-id> </citation>
</ref>
<ref id="B10">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fisher</surname>
<given-names>M. R.</given-names>
</name>
<name>
<surname>Mathai</surname>
<given-names>S. C.</given-names>
</name>
<name>
<surname>Champion</surname>
<given-names>H. C.</given-names>
</name>
<name>
<surname>Girgis</surname>
<given-names>R. E.</given-names>
</name>
<name>
<surname>Housten-Harris</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Hummers</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2006</year>). <article-title>Clinical Differences between Idiopathic and Scleroderma-Related Pulmonary Hypertension</article-title>. <source>Arthritis Rheum.</source> <volume>54</volume> (<issue>9</issue>), <fpage>3043</fpage>&#x2013;<lpage>3050</lpage>. <pub-id pub-id-type="doi">10.1002/art.22069</pub-id> </citation>
</ref>
<ref id="B11">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Furuya</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Satoh</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Kuwana</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>Interleukin-6 as a Potential Therapeutic Target for Pulmonary Arterial Hypertension</article-title>. <source>Int. J.&#x20;Rheumatol.</source> <volume>2010</volume>, <fpage>720305</fpage>. <pub-id pub-id-type="doi">10.1155/2010/720305</pub-id> </citation>
</ref>
<ref id="B12">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Garcia</surname>
<given-names>A. A.</given-names>
</name>
<name>
<surname>Hirte</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Fleming</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Yang</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Tsao-Wei</surname>
<given-names>D. D.</given-names>
</name>
<name>
<surname>Roman</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2008</year>). <article-title>Phase II Clinical Trial of Bevacizumab and Low-Dose Metronomic Oral Cyclophosphamide in Recurrent Ovarian Cancer: a Trial of the California, Chicago, and Princess Margaret Hospital Phase II Consortia</article-title>. <source>J.&#x20;Clin. Oncol.</source> <volume>26</volume> (<issue>1</issue>), <fpage>76</fpage>&#x2013;<lpage>82</lpage>. <pub-id pub-id-type="doi">10.1200/JCO.2007.12.1939</pub-id> </citation>
</ref>
<ref id="B13">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>George</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>D&#x27;Armiento</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Transgenic Expression of Human Matrix Metalloproteinase-9 Augments Monocrotaline-Induced Pulmonary Arterial Hypertension in Mice</article-title>. <source>J.&#x20;Hypertens.</source> <volume>29</volume> (<issue>2</issue>), <fpage>299</fpage>&#x2013;<lpage>308</lpage>. <pub-id pub-id-type="doi">10.1097/HJH.0b013e328340a0e4</pub-id> </citation>
</ref>
<ref id="B14">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hachulla</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Carpentier</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Gressin</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Diot</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Allanore</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Sibilia</surname>
<given-names>J.</given-names>
</name>
<etal/>
</person-group> (<year>2009</year>). <article-title>Risk Factors for Death and the 3-year Survival of Patients with Systemic Sclerosis: the French Itin&#xe9;rAIR-Scl&#xe9;rodermie Study</article-title>. <source>Rheumatology (Oxford)</source> <volume>48</volume> (<issue>3</issue>), <fpage>304</fpage>&#x2013;<lpage>308</lpage>. <pub-id pub-id-type="doi">10.1093/rheumatology/ken488</pub-id> </citation>
</ref>
<ref id="B15">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Jiang</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Humbert</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Jing</surname>
<given-names>Z.-C.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Idiopathic Pulmonary Arterial Hypertension and its Prognosis in the Modern Management Era in Developed and Developing Countries</article-title>. <source>Prog. Respir. Res.</source> <volume>41</volume>, <fpage>85</fpage>&#x2013;<lpage>93</lpage>. <pub-id pub-id-type="doi">10.1159/000336068</pub-id> </citation>
</ref>
<ref id="B16">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kadavath</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Zapantis</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Zolty</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Efthimiou</surname>
<given-names>P.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>A Novel Therapeutic Approach in Pulmonary Arterial Hypertension as a Complication of Adult-Onset Still&#x27;s Disease: Targeting IL-6</article-title>. <source>Int. J.&#x20;Rheum. Dis.</source> <volume>17</volume> (<issue>3</issue>), <fpage>336</fpage>&#x2013;<lpage>340</lpage>. <pub-id pub-id-type="doi">10.1111/1756-185X.12324</pub-id> </citation>
</ref>
<ref id="B17">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kajdaniuk</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Marek</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Borgiel-Marek</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Kos-Kud&#x142;a</surname>
<given-names>B.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Transforming Growth Factor &#x3b2;1 (TGF&#x3b2;1) in Physiology and Pathology</article-title>. <source>Endokrynol Pol.</source> <volume>64</volume> (<issue>5</issue>), <fpage>384</fpage>&#x2013;<lpage>396</lpage>. <pub-id pub-id-type="doi">10.5603/EP.2013.0022</pub-id> </citation>
</ref>
<ref id="B18">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kanehisa</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Goto</surname>
<given-names>S.</given-names>
</name>
</person-group> (<year>2000</year>). <article-title>KEGG: Kyoto Encyclopedia of Genes and Genomes</article-title>. <source>Nucleic Acids Res.</source> <volume>28</volume> (<issue>1</issue>), <fpage>27</fpage>&#x2013;<lpage>30</lpage>. <pub-id pub-id-type="doi">10.1093/nar/28.1.27</pub-id> </citation>
</ref>
<ref id="B19">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kato</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Atsumi</surname>
<given-names>T.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Pulmonary Arterial Hypertension Associated with Connective Tissue Diseases: A Review Focusing on Distinctive Clinical Aspects</article-title>. <source>Eur. J.&#x20;Clin. Invest.</source> <volume>48</volume> (<issue>2</issue>). <pub-id pub-id-type="doi">10.1111/eci.12876</pub-id> </citation>
</ref>
<ref id="B20">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kato</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Sugimoto</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Atsumi</surname>
<given-names>T.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Diagnostic and Prognostic Markers and Treatment of Connective Tissue Disease-Associated Pulmonary Arterial Hypertension: Current Recommendations and Recent Advances</article-title>. <source>Expert Rev. Clin. Immunol.</source> <volume>16</volume> (<issue>10</issue>), <fpage>1</fpage>&#x2013;<lpage>11</lpage>. <pub-id pub-id-type="doi">10.1080/1744666X.2021.1825940</pub-id> </citation>
</ref>
<ref id="B21">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liu</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Cao</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Sun</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Zhu</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Gao</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Pang</surname>
<given-names>J.</given-names>
</name>
<etal/>
</person-group> (<year>2016</year>). <article-title>Transforming Growth Factor-Beta1 Upregulation Triggers Pulmonary Artery Smooth Muscle Cell Proliferation and Apoptosis Imbalance in Rats with Hypoxic Pulmonary Hypertension via the PTEN/AKT Pathways</article-title>. <source>Int. J.&#x20;Biochem. Cel Biol.</source> <volume>77</volume> (<issue>Pt A</issue>), <fpage>141</fpage>&#x2013;<lpage>154</lpage>. <pub-id pub-id-type="doi">10.1016/j.biocel.2016.06.006</pub-id> </citation>
</ref>
<ref id="B22">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liu</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Yan</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Du</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Chen</surname>
<given-names>H.</given-names>
</name>
<etal/>
</person-group> (<year>2018</year>). <article-title>MMP-2 and MMP-9 Contribute to the Angiogenic Effect Produced by Hypoxia/15-HETE in Pulmonary Endothelial Cells</article-title>. <source>J.&#x20;Mol. Cel Cardiol.</source> <volume>121</volume>, <fpage>36</fpage>&#x2013;<lpage>50</lpage>. <pub-id pub-id-type="doi">10.1016/j.yjmcc.2018.06.006</pub-id> </citation>
</ref>
<ref id="B23">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Merklinger</surname>
<given-names>S. L.</given-names>
</name>
<name>
<surname>Jones</surname>
<given-names>P. L.</given-names>
</name>
<name>
<surname>Martinez</surname>
<given-names>E. C.</given-names>
</name>
<name>
<surname>Rabinovitch</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2005</year>). <article-title>Epidermal Growth Factor Receptor Blockade Mediates Smooth Muscle Cell Apoptosis and Improves Survival in Rats with Pulmonary Hypertension</article-title>. <source>Circulation</source> <volume>112</volume> (<issue>3</issue>), <fpage>423</fpage>&#x2013;<lpage>431</lpage>. <pub-id pub-id-type="doi">10.1161/CIRCULATIONAHA.105.540542</pub-id> </citation>
</ref>
<ref id="B24">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Moosavinasab</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Patterson</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Strouse</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Rastegar-Mojarad</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Regan</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Payne</surname>
<given-names>P. R. O.</given-names>
</name>
<etal/>
</person-group> (<year>2016</year>). <article-title>&#x27;RE:fine Drugs&#x27;: an Interactive Dashboard to Access Drug Repurposing Opportunities</article-title>. <source>Database</source> <volume>2016</volume>, <fpage>baw083</fpage>. <pub-id pub-id-type="doi">10.1093/database/baw083</pub-id> </citation>
</ref>
<ref id="B25">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Mori</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Ishibashi</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Inagaki</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Okazawa</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Masaki</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Asano</surname>
<given-names>R.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>Pristane/Hypoxia (PriHx) Mouse as a Novel Model of Pulmonary Hypertension Reflecting Inflammation and Fibrosis</article-title>. <source>Circ. J.</source> <volume>84</volume> (<issue>7</issue>), <fpage>1163</fpage>&#x2013;<lpage>1172</lpage>. <pub-id pub-id-type="doi">10.1253/circj.CJ-19-1102</pub-id> </citation>
</ref>
<ref id="B26">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Novac</surname>
<given-names>N.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Challenges and Opportunities of Drug Repositioning</article-title>. <source>Trends Pharmacol. Sci.</source> <volume>34</volume> (<issue>5</issue>), <fpage>267</fpage>&#x2013;<lpage>272</lpage>. <pub-id pub-id-type="doi">10.1016/j.tips.2013.03.004</pub-id> </citation>
</ref>
<ref id="B27">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ou</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Chen</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Zhao</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Cui</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Tu</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Overexpression of MicroRNA-340-5p Inhibits Pulmonary Arterial Hypertension Induced by APE by Downregulating IL-1&#x3b2; and IL-6</article-title>. <source>Mol. Ther. Nucleic Acids</source> <volume>21</volume>, <fpage>542</fpage>&#x2013;<lpage>554</lpage>. <pub-id pub-id-type="doi">10.1016/j.omtn.2020.05.022</pub-id> </citation>
</ref>
<ref id="B28">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sakao</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Tatsumi</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Vascular Remodeling in Pulmonary Arterial Hypertension: Multiple Cancer-like Pathways and Possible Treatment Modalities</article-title>. <source>Int. J.&#x20;Cardiol.</source> <volume>147</volume> (<issue>1</issue>), <fpage>4</fpage>&#x2013;<lpage>12</lpage>. <pub-id pub-id-type="doi">10.1016/j.ijcard.2010.07.003</pub-id> </citation>
</ref>
<ref id="B29">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sakao</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Tatsumi</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Voelkel</surname>
<given-names>N. F.</given-names>
</name>
</person-group> (<year>2009</year>). <article-title>Endothelial Cells and Pulmonary Arterial Hypertension: Apoptosis, Proliferation, Interaction and Transdifferentiation</article-title>. <source>Respir. Res.</source> <volume>10</volume>, <fpage>95</fpage>. <pub-id pub-id-type="doi">10.1186/1465-9921-10-95</pub-id> </citation>
</ref>
<ref id="B30">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sanchez</surname>
<given-names>O.</given-names>
</name>
<name>
<surname>Sitbon</surname>
<given-names>O.</given-names>
</name>
<name>
<surname>Ja&#xef;s</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Simonneau</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Humbert</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2006</year>). <article-title>Immunosuppressive Therapy in Connective Tissue Diseases-Associated Pulmonary Arterial Hypertension</article-title>. <source>Chest</source> <volume>130</volume> (<issue>1</issue>), <fpage>182</fpage>&#x2013;<lpage>189</lpage>. <pub-id pub-id-type="doi">10.1378/chest.130.1.182</pub-id> </citation>
</ref>
<ref id="B31">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sturrock</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Cahill</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Norman</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Huecksteadt</surname>
<given-names>T. P.</given-names>
</name>
<name>
<surname>Hill</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Sanders</surname>
<given-names>K.</given-names>
</name>
<etal/>
</person-group> (<year>2006</year>). <article-title>Transforming Growth Factor-Beta1 Induces Nox4 NAD(P)H Oxidase and Reactive Oxygen Species-dependent Proliferation in Human Pulmonary Artery Smooth Muscle Cells</article-title>. <source>Am. J.&#x20;Physiol. Lung Cel Mol. Physiol.</source> <volume>290</volume> (<issue>4</issue>), <fpage>L661</fpage>&#x2013;<lpage>L673</lpage>. <pub-id pub-id-type="doi">10.1152/ajplung.00269.2005</pub-id> </citation>
</ref>
<ref id="B32">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sung</surname>
<given-names>Y. K.</given-names>
</name>
<name>
<surname>Chung</surname>
<given-names>L.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Connective Tissue Disease-Associated Pulmonary Arterial Hypertension</article-title>. <source>Rheum. Dis. Clin. North. Am.</source> <volume>41</volume> (<issue>2</issue>), <fpage>295</fpage>&#x2013;<lpage>313</lpage>. <pub-id pub-id-type="doi">10.1016/j.rdc.2015.01.003</pub-id> </citation>
</ref>
<ref id="B33">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Szklarczyk</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Franceschini</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Wyder</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Forslund</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Heller</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Huerta-Cepas</surname>
<given-names>J.</given-names>
</name>
<etal/>
</person-group> (<year>2015</year>). <article-title>STRING V10: Protein-Protein Interaction Networks, Integrated over the Tree of Life</article-title>. <source>Nucleic Acids Res.</source> <volume>43</volume> (<issue>Database issue</issue>), <fpage>D447</fpage>&#x2013;<lpage>D452</lpage>. <pub-id pub-id-type="doi">10.1093/nar/gku1003</pub-id> </citation>
</ref>
<ref id="B34">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Thakkar</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Lau</surname>
<given-names>E. M.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Connective Tissue Disease-Related Pulmonary Arterial Hypertension</article-title>. <source>Best Pract. Res. Clin. Rheumatol.</source> <volume>30</volume> (<issue>1</issue>), <fpage>22</fpage>&#x2013;<lpage>38</lpage>. <pub-id pub-id-type="doi">10.1016/j.berh.2016.03.004</pub-id> </citation>
</ref>
<ref id="B35">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Thenappan</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Chan</surname>
<given-names>S. Y.</given-names>
</name>
<name>
<surname>Weir</surname>
<given-names>E. K.</given-names>
</name>
</person-group> (<year>2018a</year>). <article-title>Role of Extracellular Matrix in the Pathogenesis of Pulmonary Arterial Hypertension</article-title>. <source>Am. J.&#x20;Physiol. Heart Circ. Physiol.</source> <volume>315</volume> (<issue>5</issue>), <fpage>H1322</fpage>&#x2013;<lpage>H1331</lpage>. <pub-id pub-id-type="doi">10.1152/ajpheart.00136.2018</pub-id> </citation>
</ref>
<ref id="B36">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Thenappan</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Ormiston</surname>
<given-names>M. L.</given-names>
</name>
<name>
<surname>Ryan</surname>
<given-names>J.&#x20;J.</given-names>
</name>
<name>
<surname>Archer</surname>
<given-names>S. L.</given-names>
</name>
</person-group> (<year>2018b</year>). <article-title>Pulmonary Arterial Hypertension: Pathogenesis and Clinical Management</article-title>. <source>BMJ</source> <volume>360</volume>, <fpage>j5492</fpage>. <pub-id pub-id-type="doi">10.1136/bmj.j5492</pub-id> </citation>
</ref>
<ref id="B37">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Voelkel</surname>
<given-names>N. F.</given-names>
</name>
<name>
<surname>Gomez-Arroyo</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>The Role of Vascular Endothelial Growth Factor in Pulmonary Arterial Hypertension. The Angiogenesis Paradox</article-title>. <source>Am. J.&#x20;Respir. Cel Mol. Biol.</source> <volume>51</volume> (<issue>4</issue>), <fpage>474</fpage>&#x2013;<lpage>484</lpage>. <pub-id pub-id-type="doi">10.1165/rcmb.2014-0045TR</pub-id> </citation>
</ref>
<ref id="B38">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wagner</surname>
<given-names>A. H.</given-names>
</name>
<name>
<surname>Coffman</surname>
<given-names>A. C.</given-names>
</name>
<name>
<surname>Ainscough</surname>
<given-names>B. J.</given-names>
</name>
<name>
<surname>Spies</surname>
<given-names>N. C.</given-names>
</name>
<name>
<surname>Skidmore</surname>
<given-names>Z. L.</given-names>
</name>
<name>
<surname>Campbell</surname>
<given-names>K. M.</given-names>
</name>
<etal/>
</person-group> (<year>2016</year>). <article-title>DGIdb 2.0: Mining Clinically Relevant Drug-Gene Interactions</article-title>. <source>Nucleic Acids Res.</source> <volume>44</volume> (<issue>D1</issue>), <fpage>D1036</fpage>&#x2013;<lpage>D1044</lpage>. <pub-id pub-id-type="doi">10.1093/nar/gkv1165</pub-id> </citation>
</ref>
<ref id="B39">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yu</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Zhao</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Li</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Sheng</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Ma</surname>
<given-names>C.</given-names>
</name>
<etal/>
</person-group> (<year>2019</year>). <article-title>Dacomitinib, a New Pan-EGFR Inhibitor, Is Effective in Attenuating Pulmonary Vascular Remodeling and Pulmonary Hypertension</article-title>. <source>Eur. J.&#x20;Pharmacol.</source> <volume>850</volume>, <fpage>97</fpage>&#x2013;<lpage>108</lpage>. <pub-id pub-id-type="doi">10.1016/j.ejphar.2019.02.008</pub-id> </citation>
</ref>
<ref id="B40">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yung</surname>
<given-names>L. M.</given-names>
</name>
<name>
<surname>Nikolic</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Paskin-Flerlage</surname>
<given-names>S. D.</given-names>
</name>
<name>
<surname>Pearsall</surname>
<given-names>R. S.</given-names>
</name>
<name>
<surname>Kumar</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Yu</surname>
<given-names>P. B.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>A Selective Transforming Growth Factor-&#x3b2; Ligand Trap Attenuates Pulmonary Hypertension</article-title>. <source>Am. J.&#x20;Respir. Crit. Care Med.</source> <volume>194</volume> (<issue>9</issue>), <fpage>1140</fpage>&#x2013;<lpage>1151</lpage>. <pub-id pub-id-type="doi">10.1164/rccm.201510-1955OC</pub-id> </citation>
</ref>
<ref id="B41">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zanatta</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Polito</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Famoso</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Larosa</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>De Zorzi</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Scarpieri</surname>
<given-names>E.</given-names>
</name>
<etal/>
</person-group> (<year>2019</year>). <article-title>Pulmonary Arterial Hypertension in Connective Tissue Disorders: Pathophysiology and Treatment</article-title>. <source>Exp. Biol. Med. (Maywood)</source> <volume>244</volume> (<issue>2</issue>), <fpage>120</fpage>&#x2013;<lpage>131</lpage>. <pub-id pub-id-type="doi">10.1177/1535370218824101</pub-id> </citation>
</ref>
<ref id="B42">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zhang</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Dai</surname>
<given-names>L. Z.</given-names>
</name>
<name>
<surname>Xie</surname>
<given-names>W. P.</given-names>
</name>
<name>
<surname>Yu</surname>
<given-names>Z. X.</given-names>
</name>
<name>
<surname>Wu</surname>
<given-names>B. X.</given-names>
</name>
<name>
<surname>Pan</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2011</year>). <article-title>Survival of Chinese Patients with Pulmonary Arterial Hypertension in the Modern Treatment Era</article-title>. <source>Chest</source> <volume>140</volume> (<issue>2</issue>), <fpage>301</fpage>&#x2013;<lpage>309</lpage>. <pub-id pub-id-type="doi">10.1378/chest.10-2327</pub-id> </citation>
</ref>
<ref id="B43">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zhao</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>Q.</given-names>
</name>
<name>
<surname>Liu</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Tian</surname>
<given-names>Z.</given-names>
</name>
<name>
<surname>Guo</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>H.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>Clinical Characteristics and Survival of Pulmonary Arterial Hypertension Associated with Three Major Connective Tissue Diseases: A Cohort Study in China</article-title>. <source>Int. J.&#x20;Cardiol.</source> <volume>236</volume>, <fpage>432</fpage>&#x2013;<lpage>437</lpage>. <pub-id pub-id-type="doi">10.1016/j.ijcard.2017.01.097</pub-id> </citation>
</ref>
</ref-list>
</back>
</article>