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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Oncol.</journal-id>
<journal-title-group>
<journal-title>Frontiers in Oncology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Oncol.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">2234-943X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fonc.2025.1619309</article-id>
<article-version article-version-type="Version of Record" vocab="NISO-RP-8-2008"/>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Original Research</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Deep learning-based survival analysis of bladder cancer patients in the Putuo District, Shanghai, China</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Ruojing</surname><given-names>Wang</given-names></name>
<uri xlink:href="https://loop.frontiersin.org/people/3049430/overview"/>
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</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Yuan</surname><given-names>Shen</given-names></name>
<xref ref-type="corresp" rid="c001"><sup>*</sup></xref>
<xref ref-type="author-notes" rid="fn003"><sup>&#x2020;</sup></xref>
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<contrib contrib-type="author">
<name><surname>Feiya</surname><given-names>Shi</given-names></name>
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<contrib contrib-type="author">
<name><surname>Lijuan</surname><given-names>Yang</given-names></name>
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<contrib contrib-type="author">
<name><surname>Yicen</surname><given-names>Qin</given-names></name>
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<aff id="aff1"><institution>Department of Cancer Prevention and Systemic Regulation, Shanghai Putuo District Center for Disease Control and Prevention</institution>, <city>Shanghai</city>,&#xa0;<country country="cn">China</country></aff>
<author-notes>
<corresp id="c001"><label>*</label>Correspondence: Shen Yuan, <email xlink:href="mailto:zlfzk207@126.com">zlfzk207@126.com</email></corresp>
<fn fn-type="other" id="fn003">
<label>&#x2020;</label>
<p>ORCID: Shen Yuan, <uri xlink:href="https://orcid.org/0009-0007-2509-7514">orcid.org/0009-0007-2509-7514</uri></p></fn>
</author-notes>
<pub-date publication-format="electronic" date-type="pub" iso-8601-date="2025-11-25">
<day>25</day>
<month>11</month>
<year>2025</year>
</pub-date>
<pub-date publication-format="electronic" date-type="collection">
<year>2025</year>
</pub-date>
<volume>15</volume>
<elocation-id>1619309</elocation-id>
<history>
<date date-type="received">
<day>28</day>
<month>04</month>
<year>2025</year>
</date>
<date date-type="accepted">
<day>10</day>
<month>11</month>
<year>2025</year>
</date>
<date date-type="rev-recd">
<day>12</day>
<month>10</month>
<year>2025</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2025 Ruojing, Yuan, Feiya, Lijuan and Yicen.</copyright-statement>
<copyright-year>2025</copyright-year>
<copyright-holder>Ruojing, Yuan, Feiya, Lijuan and Yicen</copyright-holder>
<license>
<ali:license_ref start_date="2025-11-25">https://creativecommons.org/licenses/by/4.0/</ali:license_ref>
<license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License (CC BY)</ext-link>. The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p>
</license>
</permissions>
<abstract>
<sec>
<title>Background</title>
<p>Bladder cancer poses significant health risks and necessitates effective public health management.</p>
</sec>
<sec>
<title>Objective</title>
<p>To develop a deep-learning survival prediction model using TabNet and compare its performance with logistic regression.</p>
</sec>
<sec>
<title>Methods</title>
<p>Data on bladder cancer patients were collected from the Putuo District subset of Shanghai Cancer Registration and Reporting System. A total of 620 patients were included, divided into a training cohort (n=434) and a validation cohort (n=186). Logistic regression analyses were conducted to identify risk factors, while the TabNet framework was used to develop a deep learning-based model. Model performance was evaluated using ROC curves, decision curve analysis, and calibration curves. Shapley Additive Explanations (SHAP) was applied to interpret feature importance.</p>
</sec>
<sec>
<title>Results</title>
<p>Baseline characteristics showed no significant differences between the training and validation cohorts (P&gt;0.05). The TabNet model demonstrated high discriminative ability in predicting both 5-year OS and CSS within the training cohort, with net benefits surpassing those of logistic regression, and showed good calibration. In the validation cohort, the TabNet model exhibited excellent performance in predicting 5-year OS and CSS. SHAP analysis revealed that age, T stage, and N stage were the most influential factors.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>The TabNet model showed robust performance in predicting bladder cancer survival, offering valuable insights for community-based management and follow-up strategies.</p>
</sec>
</abstract>
<kwd-group>
<kwd>deep learning</kwd>
<kwd>bladder cancer</kwd>
<kwd>survival</kwd>
<kwd>logistic regression</kwd>
<kwd>5-year</kwd>
</kwd-group>
<funding-group>
<funding-statement>The author(s) declare that no financial support was received for the research and/or publication of this article.</funding-statement>
</funding-group>
<counts>
<fig-count count="5"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="41"/>
<page-count count="11"/>
<word-count count="5021"/>
</counts>
<custom-meta-group>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Genitourinary Oncology</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Bladder cancer ranks ninth in incidence and thirteenth in mortality among all malignancies. According to the Global Cancer Observatory, an estimated 613,791 new cases and 220,349 deaths were reported in 2022 (<xref ref-type="bibr" rid="B1">1</xref>). As the global population ages, the incidence of bladder cancer is projected to increase, posing continuous challenges to public health systems (<xref ref-type="bibr" rid="B2">2</xref>). In China, the improvement of medical record systems is exemplified by comprehensive records in Shanghai. The Shanghai Cancer Registry, renowned for its extensive scale and high-quality data, provides reliable information for analyzing cancer patient survival, mortality, and follow-up (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B4">4</xref>). Tumor registry data from Putuo District offers a representative sample, facilitating effective in-depth analyses of bladder cancer.</p>
<p>Bladder cancer is recognized as one of the most economically demanding malignancies due to its complex treatment requirements and high recurrence rates (<xref ref-type="bibr" rid="B5">5</xref>, <xref ref-type="bibr" rid="B6">6</xref>). Clinically, bladder cancer is classified into two distinct types: non-muscle-invasive bladder cancer (NMIBC) and muscle-invasive bladder cancer (MIBC), each with different management approaches and outcomes. The treatment typically involves substantial medical resources, including surgery, chemotherapy, and radiotherapy, resulting in significant direct medical costs. NMIBC management generally encompasses transurethral resection and intravesical therapy, whereas MIBC necessitates more aggressive interventions such as radical cystectomy combined with neoadjuvant or adjuvant systemic therapies. In addition to these costs, the disease imposes considerable socioeconomic impacts through lost productivity, prolonged unemployment, and the necessity for postoperative care. Furthermore, the management of bladder cancer patients involves periodic surveillance and ongoing medical care, which consume extensive healthcare and public health resources (<xref ref-type="bibr" rid="B7">7</xref>, <xref ref-type="bibr" rid="B8">8</xref>). Surveillance is essential for ensuring treatment efficacy and monitoring disease progression, forming the basis for evaluating and adjusting therapeutic plans. However, these procedures significantly increase the complexity and cost of care. Thus, effective oncological management strategies must balance alleviating the financial burden on patients and their families with maintaining high-quality treatment outcomes. This necessitates healthcare providers and policymakers to optimize resource allocation, refine disease management strategies, and enhance the efficiency of healthcare services.</p>
<p>Accurate survival predictions enable the development of personalized follow-up plans, the optimization of examination schedules, and the organization of rehabilitation activities for bladder cancer patients. Individuals with a favorable prognosis might benefit from extended follow-up intervals to minimize unnecessary medical interventions, whereas high-risk patients necessitate intensive monitoring to detect recurrences or metastases promptly, thus ensuring timely treatment. Existing models for predicting bladder cancer survival rates exhibit varying predictive values and influencing factors. Traditional linear models, such as logistic regression, encounter limitations when handling large datasets and often fail to capture complex variable interactions (<xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B10">10</xref>). Machine learning techniques have emerged to overcome these challenges, employing advanced algorithms to analyze multidimensional data patterns, including nonlinear relationships, thereby enhancing predictive accuracy (<xref ref-type="bibr" rid="B11">11</xref>).</p>
<p>Deep learning, as a subset of machine learning, has substantially advanced predictive modeling. These models excel in processing data and offer remarkable flexibility by automatically extracting and utilizing complex features, thereby enhancing predictive accuracy and generalization (<xref ref-type="bibr" rid="B12">12</xref>). Among these, the TabNet model stands out as a novel approach for tabular data, combining the strengths of decision trees and neural networks. This integration provides robust interpretability and efficient feature utilization, making it a powerful tool in predictive modeling (<xref ref-type="bibr" rid="B13">13</xref>).</p>
<p>The TabNet model has been successfully applied to prognostic analysis of liver metastases in rectal cancer patients, demonstrating high accuracy and reliability (<xref ref-type="bibr" rid="B14">14</xref>). Its application in bladder cancer survival analysis, however, has not yet been explored. This study employs the TabNet model to predict 5-year overall survival (OS) and cancer-specific survival (CSS) for bladder cancer patients in Putuo District, and to identify key risk factors affecting survival rates. This research is expected to provide a more precise prognostic tool for bladder cancer, thereby supporting public health decisions, optimizing follow-up schedules, and informing treatment strategies.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and methods</title>
<sec id="s2_1">
<title>Data sources</title>
<p>Medical institutions in Shanghai have reported new malignancies within the household registered population since 2002, following the Shanghai Malignant Tumor Reporting Methods. These cases are systematically recorded in the Shanghai Cancer Registration and Reporting System and managed uniformly. Local primary healthcare institutions conduct consistent follow-ups based on the patients&#x2019; residential areas. Diagnoses are confirmed by secondary or higher-level medical institutions through histopathological and specialized diagnostic examinations. All malignancies in Shanghai are coded and classified according to the International Classification of Diseases (version 10, ICD-10), and the International Classification of Diseases for Oncology 3rd Edition (ICD-O-3). In this study, we statistically analyzed patients with ICD-O-3 codes C67.0-C67.9 in Putuo District between 2010 and 2018. Mortality data were obtained from the Putuo District all-cause death registration system, and population data were provided by the Putuo District Public Security Bureau. Data were reviewed, organized, and quality-assessed using IARCergTools software from the International Agency for Research on Cancer (IARC) and the International Association of Cancer Registries (IACR) (<xref ref-type="bibr" rid="B15">15</xref>, <xref ref-type="bibr" rid="B16">16</xref>). This period was selected to ensure the availability of high-quality histopathological information and adequate follow-up time for survival analysis. Subsequently, patients with pathologically confirmed primary malignant bladder tumors and no other concurrent malignancies were included. Those with missing or incomplete data were excluded. Ultimately, 620 patients were included in the study, as illustrated in the flowchart (<xref ref-type="fig" rid="f1"><bold>Figure&#xa0;1</bold></xref>). The dataset was randomly divided into training and validation cohorts in a 7:3 ratio. Ethical approval for this study was granted by the Ethical Review Committee of Shanghai Municipal Center for Disease Control and Prevention (2024-29). The requirement for informed consent was waived due to the retrospective design of the study and the use of anonymized and de-identified patient records.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Flowchart of patient selection and cohort distribution.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-15-1619309-g001.tif">
<alt-text content-type="machine-generated">Flowchart depicting data analysis of the Putuo District from the Shanghai Cancer Registration System. From 956 bladder cancer diagnoses (2010-2018), 107 cases were combined with other tumors and 229 had incomplete data, resulting in 620 included patients. These were divided into a training cohort of 434 patients and a validation cohort of 186 patients.</alt-text>
</graphic></fig>
</sec>
<sec id="s2_2">
<title>Key variables</title>
<p>The study analyzed 14 variables from the Putuo District data of the Shanghai Cancer Registration and Reporting System. These variables included gender (male, female), age (&lt;60, 60&#x2013;69, 70&#x2013;79, &gt;80), family history of bladder cancer (yes, no), smoking status (yes, no), tumor grade (low grade, high grade), histological type (urothelial carcinoma, non-urothelial carcinoma), AJCC stage (0a/0is/I, II, III, IV), T stage (Ta/Tis/T1, T2, T3, T4), N stage (N0, N+), M stage (M0, M1), surgery (yes, no), chemotherapy (yes, no), and radiotherapy (yes, no). The primary endpoint was 5-year OS, while the secondary endpoint was 5-year CSS.</p>
</sec>
<sec id="s2_3">
<title>Model development</title>
<p>This study utilized the TabNet model to predict the outcomes of bladder cancer patients. Preprocessing entailed the normalization of all variables. Ordinal variables underwent ordinal encoding, nominal variables were subject to one-hot encoding, and binary variables were converted to 0 or 1. The TabNet model was implemented using the PyTorch TabNet framework. Hyperparameters were systematically optimized through an exhaustive grid search to minimize validation loss, with multiple parameter combinations evaluated. A five-fold cross-validation approach was used, dividing the training cohort into five parts, with each subset sequentially used as the validation cohort, thus ensuring model robustness and generalization. The model achieving the lowest validation loss across all folds was selected as the optimal model. Key hyperparameters are detailed in <xref ref-type="supplementary-material" rid="SF1"><bold>Supplementary Table S1</bold></xref>.</p>
</sec>
<sec id="s2_4">
<title>Statistical analysis</title>
<p>Data analysis was conducted using SPSS (IBM SPSS version 23.0, SPSS Inc). Univariate and multivariate logistic regression analyses were utilized to identify prognostic factors for survival in bladder cancer patients. The TabNet model was implemented using Python (Python version 3.8.6, Python Software Foundation). Performance evaluation included comparison of the area under the receiver operating characteristic (ROC) curve (AUC), accuracy, precision, recall, and F1 score between the TabNet and logistic regression models in the training cohort. Decision curve analysis and calibration curves were employed to evaluate clinical utility and predictive accuracy. Model performance was further assessed in the validation cohort to determine generalization and predictive accuracy on independent data. SHapley Additive exPlanations (SHAP) were applied to elucidate TabNet model predictions, quantify feature contributions, and enhance model transparency. Statistical significance was defined as p &lt; 0.05.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>Baseline characteristics of the two groups</title>
<p>The cohort comprised 620 patients. The majority were male (77.42%), and most were aged 60 years and above. Regarding histological grade, 65.97% presented with low grade, while 34.03% presented with high grade. Urothelial carcinoma was the predominant histological type, accounting for 93.71% of cases, with non-urothelial carcinoma present in 6.29%. Bladder cancer was primarily diagnosed at an early stage, with only 6.45% of patients presenting with distant metastasis at diagnosis. Surgery was the primary treatment modality (82.42%), while radiotherapy was infrequently used (2.90%). The 5-year CSS rate was 81.80% in the training cohort and 82.26% in the validation cohort. Comprehensive demographic and clinical characteristics, along with comparative analysis, were detailed in <xref ref-type="supplementary-material" rid="SF2"><bold>Supplementary Table S2</bold></xref>. No statistically significant differences were detected between the two cohorts across all variables (p &gt; 0.05).</p>
</sec>
<sec id="s3_2">
<title>Identification of prognostic factors with logistic regression</title>
<p>Univariate logistic regression analysis (<xref ref-type="supplementary-material" rid="SF3"><bold>Supplementary Table S3</bold></xref>) identified age as a significant predictor, with 5-year OS and CSS risks increasing in the 60-69, 70-79, and &gt;80 age groups (P&lt;0.05). Patients with non-urothelial carcinoma had significantly lower 5-year OS and CSS compared to those with urothelial carcinoma (P&lt;0.001). Higher tumor grade was associated with poorer OS and CSS (P&lt;0.001). Tumor stages T2, T3, and T4 had significantly higher OS and CSS risks compared to Ta/Tis/T1 (P&lt;0.05). Family history, smoking status, and N and M stages were also significant predictors (P&lt;0.05). However, gender was not significant (P&gt;0.05).</p>
<p>Further, multivariate logistic regression analysis (<xref ref-type="table" rid="T1"><bold>Table&#xa0;1</bold></xref>) demonstrated that 5-year OS and CSS in bladder cancer patients were significantly influenced by age, histology, tumor grade, T stage, and N stage (P&lt;0.05). Survival rates were notably lower in patients over 80 years old, those with non-urothelial carcinoma, high tumor grade, and advanced T stage (P&lt;0.05).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Multivariate logistic regression analysis of 5-year OS and CSS.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" rowspan="2" align="center">Variable</th>
<th valign="middle" colspan="3" align="center">OS</th>
<th valign="middle" colspan="3" align="center">CSS</th>
</tr>
<tr>
<th valign="middle" align="center">OR</th>
<th valign="middle" align="center">95% CI</th>
<th valign="middle" align="center"><italic>P</italic></th>
<th valign="middle" align="center">OR</th>
<th valign="middle" align="center">95% CI</th>
<th valign="middle" align="center"><italic>P</italic></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="left">Family history</td>
<td valign="middle" align="center">1.396</td>
<td valign="middle" align="center">0.452-4.316</td>
<td valign="middle" align="center">0.562</td>
<td valign="middle" align="center">1.847</td>
<td valign="middle" align="center">0.758-8.832</td>
<td valign="middle" align="center">0.129</td>
</tr>
<tr>
<td valign="middle" align="left">Smoking status</td>
<td valign="middle" align="center">1.026</td>
<td valign="middle" align="center">0.671-1.569</td>
<td valign="middle" align="center">0.905</td>
<td valign="middle" align="center">1.155</td>
<td valign="middle" align="center">0.762-1.752</td>
<td valign="middle" align="center">0.497</td>
</tr>
<tr>
<td valign="middle" align="left">Gender</td>
<td valign="middle" align="center">0.883</td>
<td valign="middle" align="center">0.492-1.585</td>
<td valign="middle" align="center">0.677</td>
<td valign="middle" align="center">1.030</td>
<td valign="middle" align="center">0.540-1.963</td>
<td valign="middle" align="center">0.930</td>
</tr>
<tr>
<td valign="middle" align="left">&lt;60</td>
<td valign="middle" align="center">Ref</td>
<td valign="middle" align="center">/</td>
<td valign="middle" align="center">&lt;0.001</td>
<td valign="middle" align="center">Ref</td>
<td valign="middle" align="center">/</td>
<td valign="middle" align="center">&lt;0.001</td>
</tr>
<tr>
<td valign="middle" align="left">60&#x2013;69</td>
<td valign="middle" align="center">2.795</td>
<td valign="middle" align="center">1.210-6.458</td>
<td valign="middle" align="center">0.016</td>
<td valign="middle" align="center">7.051</td>
<td valign="middle" align="center">1.942-25.606</td>
<td valign="middle" align="center">0.003</td>
</tr>
<tr>
<td valign="middle" align="left">70&#x2013;79</td>
<td valign="middle" align="center">8.091</td>
<td valign="middle" align="center">3.705-17.668</td>
<td valign="middle" align="center">&lt;0.001</td>
<td valign="middle" align="center">12.284</td>
<td valign="middle" align="center">3.543-42.592</td>
<td valign="middle" align="center">&lt;0.001</td>
</tr>
<tr>
<td valign="middle" align="left">&gt;80</td>
<td valign="middle" align="center">18.207</td>
<td valign="middle" align="center">8.075-41.049</td>
<td valign="middle" align="center">&lt;0.001</td>
<td valign="middle" align="center">22.431</td>
<td valign="middle" align="center">6.396-78.660</td>
<td valign="middle" align="center">&lt;0.001</td>
</tr>
<tr>
<td valign="middle" align="left">Histology</td>
<td valign="middle" align="center">0.184</td>
<td valign="middle" align="center">0.076-0.443</td>
<td valign="middle" align="center">&lt;0.001</td>
<td valign="middle" align="center">0.203</td>
<td valign="middle" align="center">0.086-0.478</td>
<td valign="middle" align="center">&lt;0.001</td>
</tr>
<tr>
<td valign="middle" align="left">Grade</td>
<td valign="middle" align="center">3.473</td>
<td valign="middle" align="center">2.184-5.521</td>
<td valign="middle" align="center">&lt;0.001</td>
<td valign="middle" align="center">2.729</td>
<td valign="middle" align="center">1.657-4.493</td>
<td valign="middle" align="center">&lt;0.001</td>
</tr>
<tr>
<td valign="middle" align="left">Ta/Tis/T1</td>
<td valign="middle" align="center">Ref</td>
<td valign="middle" align="center">/</td>
<td valign="middle" align="center">0.001</td>
<td valign="middle" align="center">Ref</td>
<td valign="middle" align="center">/</td>
<td valign="middle" align="center">0.016</td>
</tr>
<tr>
<td valign="middle" align="left">T2</td>
<td valign="middle" align="center">1.733</td>
<td valign="middle" align="center">1.027-2.925</td>
<td valign="middle" align="center">0.04</td>
<td valign="middle" align="center">2.179</td>
<td valign="middle" align="center">1.138-4.172</td>
<td valign="middle" align="center">0.019</td>
</tr>
<tr>
<td valign="middle" align="left">T3</td>
<td valign="middle" align="center">2.181</td>
<td valign="middle" align="center">1.075-4.425</td>
<td valign="middle" align="center">0.031</td>
<td valign="middle" align="center">2.969</td>
<td valign="middle" align="center">1.314-6.708</td>
<td valign="middle" align="center">0.009</td>
</tr>
<tr>
<td valign="middle" align="left">T4</td>
<td valign="middle" align="center">7.99</td>
<td valign="middle" align="center">2.953-21.617</td>
<td valign="middle" align="center">&lt;0.001</td>
<td valign="middle" align="center">4.044</td>
<td valign="middle" align="center">1.488-10.985</td>
<td valign="middle" align="center">0.006</td>
</tr>
<tr>
<td valign="middle" align="left">N stage</td>
<td valign="middle" align="center">2.721</td>
<td valign="middle" align="center">1.264-5.861</td>
<td valign="middle" align="center">0.011</td>
<td valign="middle" align="center">2.587</td>
<td valign="middle" align="center">1.169-5.726</td>
<td valign="middle" align="center">0.019</td>
</tr>
<tr>
<td valign="middle" align="left">M stage</td>
<td valign="middle" align="center">1.133</td>
<td valign="middle" align="center">0.433-2.960</td>
<td valign="middle" align="center">0.799</td>
<td valign="middle" align="center">1.349</td>
<td valign="middle" align="center">0.580-3.140</td>
<td valign="middle" align="center">0.487</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>OS, overall survival; CSS, cancer-specific survival; OR, odds ratio.</p></fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_3">
<title>Model training and cross-validation</title>
<p>During five-fold cross-validation, the optimal TabNet model for predicting 5-year OS was identified at the 65th epoch in the third fold (<xref ref-type="fig" rid="f2"><bold>Figures&#xa0;2A, B</bold></xref>), achieving a validation loss of 0.387 and a validation accuracy of 0.842. Training loss decreased from 0.733 to 0.428, and training accuracy increased from 0.717 to 0.805. The consistent decrease in both training and validation losses, along with improved accuracies, indicates robust model performance and good generalization.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Performance plots of TabNet 5-fold cross-validation. <bold>(A)</bold> Training and validation loss for 5-year OS; <bold>(B)</bold> Training and validation accuracy for 5-year OS; <bold>(C)</bold> Training and validation loss for 5-year CSS; <bold>(D)</bold> Training and validation accuracy for 5-year CSS. OS, overall survival; CSS, cancer-specific survival.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-15-1619309-g002.tif">
<alt-text content-type="machine-generated">Four graphs comparing training and validation metrics. Graph A shows training and validation loss from Fold 3, with decreasing trends and a best model epoch around 60. Graph B displays training and validation accuracy from Fold 3, with accuracy stabilizing around 80-90 percent post-best model epoch. Graph C illustrates Fold 2's training and validation loss, both declining with a best epoch near 60. Graph D shows Fold 2's accuracy, with values around 80-90 percent and a similar best epoch. Each graph highlights the best model epoch with a dashed line.</alt-text>
</graphic></fig>
<p>For predicting 5-year CSS, the best model was identified at the 53rd epoch in the second fold (<xref ref-type="fig" rid="f2"><bold>Figures&#xa0;2C, D</bold></xref>), with a validation loss of 0.259 and a validation accuracy of 0.897. Both training and validation losses demonstrated a downward trend, accompanied by significant improvements in accuracy, reflecting high model accuracy and stability. The alignment of training and validation loss curves, without a notable increase in validation loss, indicates strong model generalization.</p>
</sec>
<sec id="s3_4">
<title>Prediction of logistic regression and Tabnet in training cohort</title>
<p>The TabNet model demonstrated superior discriminative ability in predicting 5-year OS, achieving an AUC of 0.874, compared to an AUC of 0.768 for the logistic regression model (<xref ref-type="fig" rid="f3"><bold>Figure&#xa0;3A</bold></xref>). Decision curve analysis (<xref ref-type="fig" rid="f3"><bold>Figure&#xa0;3B</bold></xref>) indicated that TabNet provided higher net benefits compared with logistic regression, across threshold probabilities ranging from 0 to 0.8. The calibration curve (<xref ref-type="fig" rid="f3"><bold>Figure&#xa0;3C</bold></xref>) showed a Brier score of 0.128, indicating good calibration. TabNet outperformed logistic regression in accuracy, precision, recall, F1 score, and Kappa coefficient (<xref ref-type="table" rid="T2"><bold>Table&#xa0;2</bold></xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Predictive performance of TabNet and logistic regression in the training cohort. A-C: ROC curves <bold>(A)</bold>, decision curve analysis <bold>(B)</bold>, and calibration curves <bold>(C)</bold> for 5-year OS prediction. <bold>(D-F)</bold> ROC curves <bold>(D)</bold>, decision curve analysis <bold>(E)</bold>, and calibration curves <bold>(F)</bold> for 5-year CSS prediction. OS, overall survival; CSS, cancer-specific survival; ROC, receiver operating characteristic.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-15-1619309-g003.tif">
<alt-text content-type="machine-generated">Comparison of TabNet and Logistic Regression models using ROC, Decision, and Calibration curves. Panels A and D show ROC curves with AUC values, TabNet outperforming. Panels B and E depict Decision Curve Analysis, indicating net benefits. Panels C and F illustrate Calibration Curves with Brier Scores, showing calibration performance, again favoring TabNet.</alt-text>
</graphic></fig>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Performance comparison of predictive models in the training cohort.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" rowspan="2" align="center">Performance metrics</th>
<th valign="middle" colspan="2" align="center">5-year OS</th>
<th valign="middle" colspan="2" align="center">5-year CSS</th>
</tr>
<tr>
<th valign="middle" align="center">TabNet</th>
<th valign="middle" align="center">Logistic</th>
<th valign="middle" align="center">TabNet</th>
<th valign="middle" align="center">Logistic</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="left">AUC</td>
<td valign="middle" align="center">0.874</td>
<td valign="middle" align="center">0.768</td>
<td valign="middle" align="center">0.864</td>
<td valign="middle" align="center">0.742</td>
</tr>
<tr>
<td valign="middle" align="left">Accuracy</td>
<td valign="middle" align="center">0.804</td>
<td valign="middle" align="center">0.770</td>
<td valign="middle" align="center">0.864</td>
<td valign="middle" align="center">0.811</td>
</tr>
<tr>
<td valign="middle" align="left">Precision</td>
<td valign="middle" align="center">0.750</td>
<td valign="middle" align="center">0.641</td>
<td valign="middle" align="center">0.750</td>
<td valign="middle" align="center">0.333</td>
</tr>
<tr>
<td valign="middle" align="left">Recall</td>
<td valign="middle" align="center">0.512</td>
<td valign="middle" align="center">0.512</td>
<td valign="middle" align="center">0.380</td>
<td valign="middle" align="center">0.038</td>
</tr>
<tr>
<td valign="middle" align="left">F1 Score</td>
<td valign="middle" align="center">0.608</td>
<td valign="middle" align="center">0.569</td>
<td valign="middle" align="center">0.504</td>
<td valign="middle" align="center">0.068</td>
</tr>
<tr>
<td valign="middle" align="left">Kappa</td>
<td valign="middle" align="center">0.484</td>
<td valign="middle" align="center">0.414</td>
<td valign="middle" align="center">0.435</td>
<td valign="middle" align="center">0.032</td>
</tr>
<tr>
<td valign="middle" align="left">Brier Score</td>
<td valign="middle" align="center">0.128</td>
<td valign="middle" align="center">0.164</td>
<td valign="middle" align="center">0.105</td>
<td valign="middle" align="center">0.097</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>AUC, area under the curve. OS, overall survival; CSS, cancer-specific survival.</p></fn>
</table-wrap-foot>
</table-wrap>
<p>Similarly, for 5-year CSS prediction, the TabNet model exhibited an AUC of 0.864, surpassing an AUC of 0.742 for the logistic regression model (<xref ref-type="fig" rid="f3"><bold>Figure&#xa0;3D</bold></xref>). Decision curve analysis (<xref ref-type="fig" rid="f3"><bold>Figure&#xa0;3E</bold></xref>) demonstrated higher net benefits for TabNet at threshold probabilities ranging from 0 to 0.8. TabNet showed significantly better accuracy, precision, recall, F1 score, and Kappa coefficient. Despite a slightly better Brier score, the logistic regression model exhibited notably inferior overall predictive performance (<xref ref-type="fig" rid="f3"><bold>Figure&#xa0;3F</bold></xref>).</p>
</sec>
<sec id="s3_5">
<title>Prediction of TabNet in validation cohort</title>
<p>The TabNet model demonstrated excellent performance in predicting 5-year OS and 5-year CSS within the validation cohort. ROC curve analysis (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4A</bold></xref>) for OS prediction showed an AUC of 0.856, indicating high discriminative ability. Decision curve analysis (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4B</bold></xref>) indicated significant net benefits for the TabNet model across various threshold probabilities. The calibration curve (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4C</bold></xref>) showed a Brier score of 0.160, reflecting good calibration. For 5-year CSS prediction, the TabNet model achieved an AUC of 0.839 (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4D</bold></xref>), indicating robust discriminative power. Decision curve analysis (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4E</bold></xref>) demonstrated substantial net benefits across threshold probabilities ranging from 0 to 0.7. The calibration curve (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4F</bold></xref>) revealed a Brier score of 0.104, indicating good calibration.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Validation performance of TabNet in predicting 5-year OS and CSS. A-C: ROC curves <bold>(A)</bold>, decision curve analysis <bold>(B)</bold>, and calibration curves <bold>(C)</bold> for 5-year OS prediction. <bold>(D-F)</bold> ROC curve <bold>(D)</bold>, decision curve analysis <bold>(E)</bold>, and calibration curve <bold>(F)</bold> for 5-year CSS prediction. OS, overall survival; CSS, cancer-specific survival; ROC, receiver operating characteristic.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-15-1619309-g004.tif">
<alt-text content-type="machine-generated">Panel of six charts showing model evaluation metrics.   Chart A: ROC curve with an AUC of 0.856 for TabNet.   Chart B: Decision curve analysis showing net benefit versus threshold probability for TabNet.   Chart C: Calibration curve for TabNet with a Brier score of 0.160.  Chart D: ROC curve with an AUC of 0.839 for TabNet.   Chart E: Decision curve analysis showing net benefit versus threshold probability for TabNet.   Chart F: Calibration curve for TabNet with a Brier score of 0.104.</alt-text>
</graphic></fig>
</sec>
<sec id="s3_6">
<title>SHAP analysis of TabNet model predictions</title>
<p>SHAP analysis elucidated the significance and specific impacts of various features in the TabNet model. As shown in <xref ref-type="fig" rid="f5"><bold>Figure&#xa0;5A</bold></xref>, higher feature values (red) and lower feature values (blue) were observed to have different impacts on the model&#x2019;s output. Positive SHAP values indicated an increased predicted probability of death, while negative SHAP values indicated an increased predicted probability of survival. Age significantly affected the model&#x2019;s predictions, with increased age correlating with a reduced probability of survival. The N stage and T stage were also critical, with higher stages indicating more advanced disease and poorer prognosis. Additionally, tumor grade and smoking status also had a notable impact. The average SHAP value plot (<xref ref-type="fig" rid="f5"><bold>Figure&#xa0;5B</bold></xref>) revealed that age, N stage, and T stage had the greatest impact on 5-year OS predictions, while tumor grade and smoking status exhibited a moderate effect.</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Variable importance in TabNet model. <bold>(A)</bold> SHAP summary plot of the top 10 features for predicting 5-year OS; <bold>(B)</bold> SHAP-based feature importance ranking for predicting 5-year OS; <bold>(C)</bold> SHAP summary plot of the top 10 features for predicting 5-year CSS; <bold>(D)</bold> SHAP-based feature importance ranking for predicting 5-year CSS. SHAP, shapley additive explanations; OS, overall survival; CSS, cancer-specific survival.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-15-1619309-g005.tif">
<alt-text content-type="machine-generated">Panel A shows a SHAP summary plot with variables like Age and T influencing model output, with feature values ranging from low (blue) to high (pink). Panel B displays a bar graph of mean absolute SHAP values, with Age having the highest impact. Panel C has a similar SHAP summary plot, with T and N as significant variables. Panel D, another bar graph, shows T as the most impactful feature.</alt-text>
</graphic></fig>
<p>For predicting 5-year CSS, the SHAP summary plot (<xref ref-type="fig" rid="f5"><bold>Figure&#xa0;5C</bold></xref>) illustrated the impact of each feature on the model&#x2019;s output, with red indicating higher feature values and blue indicating lower feature values. The T stage, N stage, and age emerged as key determinants of the model&#x2019;s predictions, with higher T and N stages and older age associated with worse survival outcomes. The average SHAP value plot (<xref ref-type="fig" rid="f5"><bold>Figure&#xa0;5D</bold></xref>) identified T stage, N stage, and age as having the most notable average effects on 5-year CSS predictions, with histology and smoking status having a moderate influence.</p>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>Bladder cancer, the second most common malignancy in the genitourinary system after prostate cancer, has rising incidence and mortality rates, imposing significant burdens on society and healthcare systems (<xref ref-type="bibr" rid="B17">17</xref>). Effective predictive models are crucial for community-based cancer management, patient follow-up, and healthcare resource allocation. This study utilized data from the Putuo District within the Shanghai Cancer Registration and Reporting System to develop and validate an individualized survival prediction model for bladder cancer patients using deep learning algorithms. The TabNet model demonstrated enhanced performance in predicting 5-year OS and CSS compared to logistic regression, achieving higher accuracy and better calibration. In the validation set, TabNet demonstrated superior performance in ROC curves, decision curve analysis, and calibration curves, indicating high clinical utility. SHAP analysis identified age, N stage, and T stage as the primary factors affecting 5-year OS and CSS. These findings provide a basis for improving community-based cancer surveillance and facilitating more efficient population health management for bladder cancer patients.</p>
<p>The 5-year survival rates for bladder cancer patients exhibit regional variations globally. Europe reports an age-standardized relative 5-year OS of approximately 70% (<xref ref-type="bibr" rid="B18">18</xref>). In the United States, the average 5-year OS is 77%, with 19% of patients succumbing to bladder cancer (<xref ref-type="bibr" rid="B19">19</xref>). Data from China show an increase in the 5-year survival rate from 67.3% to 71.6% between 2003 and 2015, comparable to international levels (<xref ref-type="bibr" rid="B20">20</xref>). This study found a 5-year OS rate of 70.48% and a CSS rate of 81.94%, slightly lower but generally in line with the national data. According to the National Central Cancer Registry (NCCR) of China (<xref ref-type="bibr" rid="B21">21</xref>), 91.4% of bladder cancers are urothelial carcinoma, with approximately 55-60% classified as low-grade tumors. These proportions align with our findings, indicating the representativeness and reliability of the sample. The cancer registry provides high-quality, comprehensive data, enabling effective monitoring of cancer incidence and survival rates, thereby supporting the development and evaluation of cancer prevention and control strategies.</p>
<p>Traditionally, clinicians have relied on the American Joint Committee on Cancer (AJCC) staging guidelines, using T, N, and M stages for preliminary prognosis assessment (<xref ref-type="bibr" rid="B22">22</xref>). However, this system fails to account for demographic factors or treatment modalities, which significantly influence outcome prediction. Consequently, researchers have developed more comprehensive predictive models. Zhang et&#xa0;al. (<xref ref-type="bibr" rid="B23">23</xref>). integrated TNM staging with clinical parameters to construct a nomogram for visualizing survival rates, achieving a C-index of 0.813 for 5-year OS, thereby demonstrating superior predictive performance compared to the AJCC-TNM staging. Similarly, He et&#xa0;al. (<xref ref-type="bibr" rid="B24">24</xref>). developed a nomogram based on the Surveillance, Epidemiology, and End Results (SEER) database to predict CSS for postoperative bladder cancer at the population level, yielding a C-index of 0.823. Despite the acceptable predictive accuracy of these models, certain limitations exist. The complexity of the calculations and the challenges in addressing collinearity among variables may impact the stability of the results. In this study, logistic regression analysis was used to predict 5-year OS, resulting in an AUC of 0.768, and 5-year CSS, resulting in an AUC of 0.742. These findings are consistent with previous research, indicating a moderate level of predictive capability and highlighting the potential for further improvement.</p>
<p>The continuous advancement of artificial intelligence has led to the development of innovative predictive tools. Leveraging multi-omics data from large-scale databases (GEO, TCGA, and IMvigor210), ensemble machine learning approaches have successfully constructed robust risk stratification models, demonstrating significant value in predicting treatment response and immunotherapy outcomes for bladder cancer patients (<xref ref-type="bibr" rid="B25">25</xref>). In a study involving 161,227 bladder cancer patients, Bhambhvani et&#xa0;al. (<xref ref-type="bibr" rid="B26">26</xref>). employed clinical-pathological data and sociodemographic variables to train an artificial neural network (ANN) for predicting 5-year CSS, achieving an AUC of 0.81, which was more accurate than traditional multivariate models. Although ANNs are proficient at capturing complex patterns and nonlinear relationships, they present challenges in transparency, feature selection, and susceptibility to overfitting. In comparison, deep learning utilizes more intricate neural network structures to enhance the extraction and processing of complex features. These advanced models excel in handling high-dimensional and large-scale data, effectively mitigating overfitting risks (<xref ref-type="bibr" rid="B27">27</xref>, <xref ref-type="bibr" rid="B28">28</xref>). In this study, the TabNet deep learning model demonstrated AUCs of 0.874 for 5-year OS and 0.864 for CSS, significantly exceeding the performance of logistic regression models. The moderate F1 and Kappa values reflect the sensitivity of these metrics to class imbalance (80% survival vs. 20% death), while the high AUC and positive decision curve analysis confirm strong discrimination ability for risk stratification. These findings underscore the potential of TabNet in prognostic prediction for bladder cancer and provide strong support for its application in community-based cancer management and surveillance. Indeed, the attention mechanism in TabNet facilitates automatic feature selection, addresses collinearity issues, and enhances model transparency and interpretability, making it particularly suitable for population health management.</p>
<p>Bladder cancer is a complex disease influenced by various factors, significantly impacting survival rates. Age at diagnosis is a well-known predictor of poor OS and CSS in bladder cancer (<xref ref-type="bibr" rid="B29">29</xref>, <xref ref-type="bibr" rid="B30">30</xref>). A study indicates that cancer mortality is 15 times higher in individuals aged &#x2265;65 compared to those under 65 (<xref ref-type="bibr" rid="B31">31</xref>). In our study, age was identified as the most significant factor affecting 5-year OS. This can be attributed to the decline in immune function in elderly patients, reducing their resistance to tumors. The presence of chronic diseases further increases the risk of treatment complications. Additionally, older patients are often diagnosed at more advanced stages, delaying optimal treatment (<xref ref-type="bibr" rid="B32">32</xref>). In another study based on data from the SEER database, Wang et&#xa0;al. (<xref ref-type="bibr" rid="B33">33</xref>). found that age, T stage, and N stage were the important prognostic factors, which is consistent with our findings. The T stage indicates the extent of tumor invasion, with higher stages correlating with deeper bladder wall invasion and poorer prognosis (<xref ref-type="bibr" rid="B34">34</xref>). The N stage reflects lymph node involvement, with higher stages suggesting greater metastatic risk, complicating treatment, and lowering survival rates (<xref ref-type="bibr" rid="B35">35</xref>).</p>
<p>Moreover, our study identified smoking and tumor grade as additional prognostic factors with a considerable degree of influence. Numerous studies have demonstrated a strong association between smoking and the development of bladder cancer, identifying it as a significant risk factor (<xref ref-type="bibr" rid="B36">36</xref>&#x2013;<xref ref-type="bibr" rid="B38">38</xref>). Approximately 30-50% of bladder cancer deaths are attributed to smoking across various populations (<xref ref-type="bibr" rid="B39">39</xref>). Although smoking status ranked as a moderate predictor in our SHAP analysis, its modifiable nature distinguishes it from other prognostic factors. This suggests that smoking cessation interventions integrated into survivorship care could potentially improve outcomes, representing a practical target for both clinical and community-level prevention strategies. Similar to 5-year OS, 5-year CSS in our study was primarily influenced by age, T stage, and N stage, with smoking and histological features also impacting patient prognosis. Patients with non-urothelial carcinomas, such as adenocarcinoma and squamous cell carcinoma, have poorer prognoses, likely due to the aggressive nature of these histological types and their poorer response to standard treatments (<xref ref-type="bibr" rid="B40">40</xref>).</p>
<p>Prognostic modeling in bladder cancer has achieved significant advances, with Li et&#xa0;al. (<xref ref-type="bibr" rid="B41">41</xref>) developing a validated nomogram for predicting overall survival in postoperative high-grade bladder urothelial carcinoma patients using SEER data and external validation cohorts, while Bhambhvani et&#xa0;al. demonstrated that ANN could achieve enhanced discriminative performance in 5-year survival prediction (<xref ref-type="bibr" rid="B26">26</xref>). In the present study, we employed TabNet architecture integrated with SHAP analysis to enhance model interpretability. The SHAP framework enables decomposition of model predictions into additive feature attributions, revealing not only which variables influence prognosis but also the magnitude and directionality of their effects across different patient profiles. This transparency facilitates personalized risk assessment by allowing clinicians to understand the specific factors driving individual patient predictions, thereby supporting evidence-based treatment planning and informed patient counseling. An ideal prognostic tool should incorporate readily available variables with significant predictive value while maintaining interpretability, and our TabNet model with SHAP analysis achieved satisfactory predictive performance alongside transparent feature attribution.</p>
<p>This study has several limitations. First, the lack of data on surgical methods, patient comorbidities, and socioeconomic status may affect prognostic assessment. Efforts were made to mitigate this limitation by incorporating a comprehensive set of other relevant variables to enhance the robustness of the analysis. Second, excluding patients with incomplete data may introduce selection bias. However, this approach was necessary to maintain data integrity and analytical accuracy, thereby preventing potential errors due to missing data. Third, this model was developed and validated exclusively using data from Putuo District. Although the Shanghai Cancer Registry ensures high-quality population-based surveillance with comprehensive follow-up, the geographic confinement to a single district raises concerns about generalizability. Regional variations in bladder cancer epidemiology, including risk factor distributions and clinical presentations, may influence model performance across different populations. External validation using datasets from geographically and demographically diverse populations is essential to assess the model&#x2019;s transferability and clinical utility. Prospective validation efforts would help determine the model&#x2019;s broader applicability and inform necessary adaptations for specific regional contexts. Fourth, our cohort of 620 patients is relatively small for deep learning. However, rigorous validation demonstrated satisfactory generalization, and TabNet&#x2019;s superior performance over logistic regression justified this approach. Larger multi-center datasets would further strengthen model robustness and enable broader generalizability assessment. Fifth, our comparison was limited to TabNet and logistic regression. Comprehensive benchmarking with additional machine learning methods (XGBoost, Random Forest, multilayer perceptron) would provide valuable insights and represents an important direction for future research with larger multi-center datasets.</p>
</sec>
<sec id="s5" sec-type="conclusion">
<title>Conclusion</title>
<p>The deep learning-based TabNet model shows great potential in predicting survival outcomes for bladder cancer patients, offering advantages such as handling high-dimensional data and providing robust performance. This model can be a valuable tool for community healthcare workers to identify high-risk patients who require more intensive follow-up and resource allocation. Age, T stage, and N stage emerged as the most significant prognostic factors, highlighting their critical role in determining patient outcomes and providing guidance for developing targeted community intervention strategies. External validation across diverse populations is warranted to establish the model&#x2019;s generalizability before broader clinical implementation.</p>
</sec>
</body>
<back>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SF1"><bold>Supplementary Material</bold></xref>. Further inquiries can be directed to the corresponding author/s.</p></sec>
<sec id="s7" sec-type="ethics-statement">
<title>Ethics statement</title>
<p>The studies involving humans were approved by the Ethical Review Committee of Shanghai Municipal Center for Disease Control and Prevention (2024-29). The studies were conducted in accordance with the local legislation and institutional requirements. Written informed consent for participation was not required from the participants or the participants&#x2019; legal guardians/next of kin in accordance with the national legislation and institutional requirements.</p></sec>
<sec id="s8" sec-type="author-contributions">
<title>Author contributions</title>
<p>WR: Methodology, Conceptualization, Writing &#x2013; review &amp; editing, Validation, Supervision, Software, Visualization, Formal Analysis, Writing &#x2013; original draft, Data curation. SY: Writing &#x2013; review &amp; editing, Investigation, Conceptualization, Supervision, Project administration, Writing &#x2013; original draft. SF: Resources, Data curation, Validation, Visualization, Formal Analysis, Writing &#x2013; original draft, Software. YL: Data curation, Investigation, Methodology, Resources, Project administration, Formal Analysis, Writing &#x2013; original draft, Validation. QY: Data curation, Resources, Methodology, Validation, Conceptualization, Writing &#x2013; original draft, Formal Analysis.</p></sec>
<sec id="s10" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p></sec>
<sec id="s11" sec-type="ai-statement">
<title>Generative AI statement</title>
<p>The author(s) declare that no Generative AI was used in the creation of this manuscript.</p>
<p>Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.</p></sec>
<sec id="s12" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p></sec>
<sec id="s13" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fonc.2025.1619309/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fonc.2025.1619309/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Table1.docx" id="SF1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document"><label>Supplementary Table&#xa0;1</label>
<caption>
<p>TabNet model hyperparameters and training protocol.</p>
</caption></supplementary-material>
<supplementary-material xlink:href="Table1.docx" id="SF2" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document"><label>Supplementary Table&#xa0;2</label>
<caption>
<p>Demographic and clinical data for training and validation cohorts.</p>
</caption></supplementary-material>
<supplementary-material xlink:href="Table1.docx" id="SF3" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document"><label>Supplementary Table&#xa0;3</label>
<caption>
<p>Univariate logistic regression analysis of 5-year OS and CSS.</p>
</caption></supplementary-material></sec>
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