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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Oncol.</journal-id>
<journal-title>Frontiers in Oncology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Oncol.</abbrev-journal-title>
<issn pub-type="epub">2234-943X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fonc.2024.1394671</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Oncology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Calculation of alpha particle single-event spectra using a neural network</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Alkhani</surname>
<given-names>Layth</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2526076"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Luce</surname>
<given-names>Jason P.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2840702"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/resources/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>M&#xed;nguez Gabi&#xf1;a</surname>
<given-names>Pablo</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1910454"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Roeske</surname>
<given-names>John C.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/243165"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/project-administration/"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Bioengineering, Stanford University</institution>, <addr-line>Stanford, CA</addr-line>, <country>United States</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Radiation Oncology, Stritch School of Medicine, Loyola University Chicago</institution>, <addr-line>Maywood, IL</addr-line>, <country>United States</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Department of Medical Physics and Radiation Protection, Gurutzeta/Cruces University Hospital, Biocruces Health Research Institute</institution>, <addr-line>Barakaldo</addr-line>, <country>Spain</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Francesca Ballarini, University of Pavia, Italy</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Dimitris Emfietzoglou, University of Ioannina, Greece</p>
<p>Mario Pietro Carante, University of Pavia, Italy</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: John C. Roeske, <email xlink:href="mailto:jroeske@lumc.edu">jroeske@lumc.edu</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>02</day>
<month>10</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>14</volume>
<elocation-id>1394671</elocation-id>
<history>
<date date-type="received">
<day>01</day>
<month>03</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>30</day>
<month>08</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Alkhani, Luce, M&#xed;nguez Gabi&#xf1;a and Roeske</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Alkhani, Luce, M&#xed;nguez Gabi&#xf1;a and Roeske</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Introduction</title>
<p>A neural network was trained to accurately predict the entire single-event specific energy spectra for use in alpha-particle microdosimetry calculations.</p>
</sec>
<sec>
<title>Methods</title>
<p>The network consisted of 4 inputs and 21 outputs and was trained on data calculated using Monte Carlo simulation where input parameters originated both from previously published data as well as randomly generated parameters that fell within a target range. The 4 inputs consisted of the source-target configuration (consisting of both cells in suspension and in tissue-like geometries), alpha particle energy (3.97&#x2013;8.78 MeV), nuclei radius (2&#x2013;10 &#x3bc;m), and cell radius (2.5&#x2013;20 &#x3bc;m). The 21 output values consisted of the maximum specific energy (z<sub>max</sub>), and 20 values of the single-event spectra, which were expressed as fractional values of z<sub>max</sub>. The neural network consisted of two hidden layers with 10 and 26 nodes, respectively, with the loss function characterized as the mean square error (MSE) between the actual and predicted values for z<sub>max</sub> and the spectral outputs. </p>
</sec>
<sec>
<title>Results</title>
<p>For the final network, the root mean square error (RMSE) values of z<sub>max</sub> for training, validation and testing were 1.57 x10<sup>-2</sup>, 1.51 x 10<sup>-2</sup> and 1.35 x 10<sup>-2</sup>, respectively. Similarly, the RMSE values of the spectral outputs were 0.201, 0.175 and 0.199, respectively. The correlation coefficient, R<sub>2</sub>, was &gt; 0.98 between actual and predicted values from the neural network. </p>
</sec>
<sec>
<title>Discussion</title>
<p>In summary, the network was able to accurately reproduce alpha-particle single-event spectra for a wide range of source-target geometries. </p>
</sec>
</abstract>
<kwd-group>
<kwd>microdosimetry</kwd>
<kwd>alpha particles</kwd>
<kwd>neural networks</kwd>
<kwd>radiation</kwd>
<kwd>machine learning</kwd>
</kwd-group>
<counts>
<fig-count count="7"/>
<table-count count="1"/>
<equation-count count="8"/>
<ref-count count="38"/>
<page-count count="10"/>
<word-count count="4088"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Radiation Oncology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Targeted radionuclide therapy (TRT) first saw its application over 80 years ago and since then it has grown to become an area of great interest as advances in cancer biology, bioengineering, and radiochemistry have dramatically increased the potential of this modality (<xref ref-type="bibr" rid="B1">1</xref>). In contrast to other therapeutic techniques, TRT is based on the use of high-affinity molecules as carriers of radionuclides to tumor cells (<xref ref-type="bibr" rid="B2">2</xref>&#x2013;<xref ref-type="bibr" rid="B5">5</xref>). The nature of this technology thus creates an approach for tumor therapy that is personalized to each individual patient, making strides towards a future that mitigates risks for normal tissue damage by delivering a highly conformal absorbed dose to the tumor (<xref ref-type="bibr" rid="B1">1</xref>). There are three classes of radionuclides that have been considered for TRT: alpha emitters, beta emitters, and Auger electron emitters (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B6">6</xref>&#x2013;<xref ref-type="bibr" rid="B8">8</xref>). Of these, alpha emitters have inherent properties that make them favorable in comparison to the others, pushing some to regard them as a potential &#x201c;magic bullet&#x201d; (<xref ref-type="bibr" rid="B5">5</xref>). The advantages of alpha emitters include: 1) high energy (3&#x2013;9 MeV); 2)&#xa0;a densely ionizing track; 3) short path length (40&#x2013;90 &#xb5;m, corresponding to 2&#x2013;10 cell diameters), 4) high linear energy transfer (LET) and 5) independence of dose rate and oxygen effects (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B8">8</xref>). The practical implications of these characteristics allow for alpha particles to sterilize individual tumor cells solely from self-irradiation which is not possible with the more widely used beta-particle emitters (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B8">8</xref>). Moreover, alpha-particle emitters have shown promising clinical results, for example in the treatment of metastatic castration-resistant prostate cancer (mCRPC) (<xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B10">10</xref>).</p>
<p>Despite their efficacy, the stochastic nature of alpha emitters which deposit energy in small, subcellular targets causes alpha particle dosimetry to be particularly challenging (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B8">8</xref>). Dosimetry &#x2013; i.e. the measurement of the amount of energy deposited per unit mass - has been in regular use in conventional radiotherapy (<xref ref-type="bibr" rid="B11">11</xref>). However, the minute scale at which radionuclides operate introduces significant challenges (variability in energy deposition) (<xref ref-type="bibr" rid="B11">11</xref>). At the cellular level, the amount of energy deposited in the critical target (i.e., cell nucleus) depends on the combination of both the cell geometry and the alpha particle&#x2019;s path through that target (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B8">8</xref>). Additionally, some cell nuclei may receive multiple alpha particle hits while others receive few or none. Consequently, the stochastic nature of alpha particles hits combined with the non-uniform energy deposition may result in a local deviations exceeding 20% in the energy deposited within cell nuclei (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B8">8</xref>, <xref ref-type="bibr" rid="B12">12</xref>). This variation was established through Monte Carlo simulations and analytical calculations which showed that such variations are common due to the random nature of alpha particle interactions at the microscopic level necessitating the use of microdosimetry to accurately measure the energy deposited within cellular targets (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B8">8</xref>, <xref ref-type="bibr" rid="B12">12</xref>).</p>
<p>Microdosimetry considers the stochastic nature of the energy deposited per unit mass. Specific energy (z) is the microdosimetric analog of absorbed dose (D) and is given by:</p>
<disp-formula id="eq1">
<label>(1)</label>
<mml:math display="block" id="M1">
<mml:mrow>
<mml:mi>z</mml:mi>
<mml:mo>=</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mfrac>
<mml:mtext>&#x3f5;</mml:mtext>
<mml:mi>m</mml:mi>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where &#x3f5; is the energy deposited within the cellular target and <italic>m</italic> is the mass of that target. Similar to absorbed dose, specific energy has units of Gy. A fundamental quantity in microdosimetry is the single-event specific-energy spectrum (f<sub>1</sub>(z<sub>1</sub>)) which is the frequency distribution of specific energy deposited within the target for exactly one alpha particle hit (<xref ref-type="bibr" rid="B13">13</xref>). The multi-hit spectrum for n alpha particle hits can be determined by performing multiple convolutions of the single-event spectrum (<xref ref-type="bibr" rid="B14">14</xref>). Of significance, single-event spectra can be used to estimate cell survival using:</p>
<disp-formula id="eq2">
<label>(2)</label>
<mml:math display="block" id="M2">
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>D</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>=</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:msup>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mrow>
<mml:mo>&#x2329;</mml:mo>
<mml:mi>n</mml:mi>
<mml:mo>&#x232a;</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mo stretchy="false">[</mml:mo>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo stretchy="false">]</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where S(D) is the fraction of cells that survive after receiving an average dose D, &lt;n&gt; is the average number of hits to the cellular target, T<sub>1</sub>(z<sub>o</sub>) is the Laplace transform of the single-event spectrum, f<sub>1</sub>(z<sub>1</sub>), and z<sub>o</sub> is the specific energy deposited in a cell to reduce survival to 1/e (<xref ref-type="bibr" rid="B15">15</xref>, <xref ref-type="bibr" rid="B16">16</xref>).</p>
<p>Alternatively, the first and second moments of the single-event spectrum can also be used to estimate cell survival (<xref ref-type="bibr" rid="B15">15</xref>, <xref ref-type="bibr" rid="B17">17</xref>&#x2013;<xref ref-type="bibr" rid="B19">19</xref>). The first moment of the single-event spectrum given by:</p>
<disp-formula id="eq3">
<label>(3)</label>
<mml:math display="block" id="M3">
<mml:mrow>
<mml:mrow>
<mml:mo>&#x2329;</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mo>&#x232a;</mml:mo>
</mml:mrow>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>=</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:munderover>
<mml:mo>&#x222b;</mml:mo>
<mml:mrow>
<mml:mi>z</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
<mml:mi>&#x221e;</mml:mi>
</mml:munderover>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:mo>&#xa0;</mml:mo>
<mml:msub>
<mml:mi>f</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>d</mml:mi>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
</mml:mrow>
</mml:math>
</disp-formula>
<p>while the second moment is defined as:</p>
<disp-formula id="eq4">
<label>(4)</label>
<mml:math display="block" id="M4">
<mml:mrow>
<mml:mrow>
<mml:mo>&#x2329;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mi>z</mml:mi>
<mml:mn>1</mml:mn>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
<mml:mo>&#x232a;</mml:mo>
</mml:mrow>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>=</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:munderover>
<mml:mo>&#x222b;</mml:mo>
<mml:mrow>
<mml:mi>z</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
<mml:mi>&#x221e;</mml:mi>
</mml:munderover>
<mml:msubsup>
<mml:mi>z</mml:mi>
<mml:mn>1</mml:mn>
<mml:mn>2</mml:mn>
</mml:msubsup>
<mml:mo>&#xa0;</mml:mo>
<mml:msub>
<mml:mi>f</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>d</mml:mi>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</disp-formula>
<p>Using these moments, T<sub>1</sub>(z<sub>o</sub>) from <xref ref-type="disp-formula" rid="eq2">Equation 2</xref> can approximated by (<xref ref-type="bibr" rid="B20">20</xref>):</p>
<disp-formula id="eq5">
<label>(5)</label>
<mml:math display="block" id="M5">
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>&#x2248;</mml:mo>
<mml:mtext>exp&#xa0;</mml:mtext>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
<mml:mo>&#x2329;</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mo>&#x232a;</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2212;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
<mml:mo>&#x2329;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mi>z</mml:mi>
<mml:mn>1</mml:mn>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
<mml:mo>&#x232a;</mml:mo>
</mml:mrow>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mrow>
<mml:mo>&#x2329;</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mo>&#x232a;</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
<mml:msubsup>
<mml:mi>z</mml:mi>
<mml:mi>o</mml:mi>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</disp-formula>
<p>Relating to classical microdosimetry, &lt;z<sub>1</sub>&gt; is the frequency mean (z<sub>F</sub>) while &lt;z<sub>1</sub>
<sup>2</sup>&gt;/&lt;z<sub>1</sub>&gt; is the dose mean (z<sub>D</sub>) specific energy per event described by Kellerer (<xref ref-type="bibr" rid="B12">12</xref>) and Roesch (<xref ref-type="bibr" rid="B21">21</xref>). Moreover, these quantities have been related to cellular damage from alpha particle emitters (<xref ref-type="bibr" rid="B20">20</xref>, <xref ref-type="bibr" rid="B22">22</xref>).</p>
<p>In order to calculate microdosimetric spectra, an analytical or Monte Carlo (MC) approach can be used (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B8">8</xref>). The complexity that arises from many alpha-particle emissions combined with the greater flexibility which is provided by the MC simulation makes this approach favorable (<xref ref-type="bibr" rid="B8">8</xref>, <xref ref-type="bibr" rid="B23">23</xref>). A recent study conducted by our group determined that a neural network (NN) could be trained to accurately calculate &lt;z<sub>1</sub>&gt; and &lt;z<sub>1</sub>
<sup>2</sup>&gt; for alpha-particle microdosimetry calculations (<xref ref-type="bibr" rid="B24">24</xref>). The goal of our study is to take the next step forward and create a NN that can accurately and efficiently calculate the entire single-event specific-energy spectra. In this paper we present a novel approach where machine learning methods are utilized to &#x201c;teach&#x201d; a network to produce microdosimetric spectra from a set of input parameters (nucleus/cell size, initial alpha particle energy, and source/target geometry). This approach, the first of its kind, would allow for the network, once trained, to quickly and easily produce microdosimetric spectra for configurations that the network was not trained on, particularly, novel radionuclides (different initial alpha particle energies) and different combinations of cell/nuclear dimensions.</p>
</sec>
<sec id="s2">
<label>2</label>
<title>Methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Data set</title>
<p>In order to train the NN, the first step was to create an adequate training data set. This study collected data for the training/validation/testing from two data sets. The initial data set was produced using input values from a previously published paper (<xref ref-type="bibr" rid="B20">20</xref>). This paper was originally produced to provide the first&#xa0;and second moments of the single-event specific-energy spectrum of common alpha particle emitters to provide basic microdosimetry information. For the purposes of our study Tables I-IV were used to generate the first data set (<xref ref-type="bibr" rid="B20">20</xref>). These tables were included because the tabulated data cover the range of cell and nuclear radii as well as energies that are most likely to be encountered in TRT. Specifically, the nuclear radii ranged from 2-10 &#x3bc;m - including 2, 3, 4, 5, 6, 8, and 10 &#x3bc;m - and cell radii from 3-15 &#x3bc;m (<xref ref-type="bibr" rid="B25">25</xref>). Cells and nuclei were considered spherical and concentric. The source/target geometries considered in this study included: activity confined to the cell nucleus, activity in the cytoplasm, activity on the cell surface, and a uniform activity outside the cell (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1A&#x2013;D</bold>
</xref>). The alpha particle energies from these tables corresponded to those of radionuclides considered to be suitable for therapeutic applications: terbium-149 (3.97 MeV), polonium-210 (5.3 MeV), astatine-211 (5.867 MeV), bismuth-212 (6.05 MeV), polonium-211 (6.73 and 7.45 MeV), polonium-213 (8.37 MeV), and polonium-212 (8.78 MeV) (<xref ref-type="bibr" rid="B26">26</xref>). Other radionuclides considered for alpha particle therapy, such as thorium-227, actinium-225, radium-223 and bismuth-213, have energies within this range (<xref ref-type="bibr" rid="B26">26</xref>). The strength of this data set is the range of values which cover most clinical applications and the grid-like structure of the inputs. One drawback, however, is that a grid-like structure&#x2019;s accuracy can be severely reduced when dealing with edge cases or an input which is distant from all trained values. Use of these data resulted in 160 combinations of alpha particle emission energies, source/target geometries, cellular and nuclear radii. To account for the limitations of the previous data set another 160 values were calculated which utilized energy, nucleus radii, and cell radii that fell within the previously outlined values (energy 3.97-8.78 MeV; nuclear radii 2-10 &#x3bc;m; cell radii 3-15 &#x3bc;m) and were generated using a random number generator. The Monte Carlo (MC) algorithm used to produce these spectra is described in the <xref ref-type="app" rid="app1">
<bold>Appendix</bold>
</xref> (<xref ref-type="bibr" rid="B27">27</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Schematic diagram of the source/target distributions considered in this study: <bold>(A)</bold> source within the cell nucleus; <bold>(B)</bold> source on the cell surface; <bold>(C)</bold> source in the cell cytoplasm; <bold>(D)</bold> source outside of the cell; <bold>(E)</bold> uniform everywhere; <bold>(F)</bold> uniform everywhere except the nuclei; <bold>(G)</bold> in a spherical shell between the cell membrane and 1.25 times the cell nucleus radius; <bold>(H)</bold> only in the cytoplasm. Adapted from Wagstaff et&#xa0;al. (<xref ref-type="bibr" rid="B24">24</xref>).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-14-1394671-g001.tif"/>
</fig>
<p>In order to account for more realistic/complex geometries such as clusters of cells (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1E&#x2013;H</bold>
</xref>) microdosimetric spectra were produced using a code described previously (See <xref ref-type="app" rid="app1">
<bold>Appendix</bold>
</xref>) (<xref ref-type="bibr" rid="B19">19</xref>). These geometries simulated layers of tissue wherein for each case there is a central spherical nucleus target. The central target is surrounded by a packed grid of cells forming a plane that are stacked on top of one another to form layers simulating tissue. The sources consisted of a uniform distribution of activity, activity everywhere except the cell nuclei, activity located in a spherical shell between the cell membrane and 1.25 times the cell nucleus radius, and activity only in the cytoplasm. The energies used match the energies from the previous data ranging from 3.97 - 8.78 MeV with exceptions being the addition of 6.4 and 7.l1 MeV as well as substitutions of 5.8 and 8.4 for 5.867 and 8.37 MeV respectively. Nucleus radii ranged from 2-10 &#x3bc;m and cell radii ranged from 2.5-20 &#x3bc;m with cell-to-nucleus ratios of 1.25, 1.5, 1.75, and 2. The additional data set broadens the network by including more energies, cell and nucleus sizes, as well as the more realistic tissue configurations.</p>
<p>Together, the data sets combined from both methods consisted of 2264 unique combinations of the source-target configuration, energy, cell and nuclear radii. These input values were run through MC simulations that are described in the <xref ref-type="app" rid="app1">
<bold>Appendix</bold>
</xref>. The result of each simulation was a single-event specific-energy spectrum with 20 output values (representing the bins of the energy spectrum histogram). Each spectrum was normalized such that the area under the curve was unity. These spectra were used to train the network as described in the next section. An additional value, z<sub>max</sub>, which is defined as the maximum specific energy for each spectrum was also recorded. This value allows one to determine the scale for the x-axis of the spectrum. That is, for the k<sup>th</sup> value of the spectrum, the corresponding z value is given by kz<sub>max</sub>/20.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Neural network structure and training</title>
<p>The development of the NN used for this study was done using the MATLAB<sup>&#xae;</sup> Deep Learning Toolbox&#x2122; (The Mathworks Inc., Natick, MA, USA). The process consisted of creating, testing, and adjusting a NN until it converged to produce the best results. For the purposes of this study, the number of hidden layers and number of nodes within each layer were varied to produce the optimal NN.</p>
<p>The Levenberg-Marquardt algorithm was used for training which combines both the gradient descent method and the Gauss-Newton method to solve nonlinear least squares curve-fitting problems (<xref ref-type="bibr" rid="B28">28</xref>). This algorithm was used as it is the most efficient in comparison to other techniques for networks of our size (<xref ref-type="bibr" rid="B29">29</xref>). The associated error function for this algorithm is the mean squared error (MSE) where a value close to zero is favorable. This is optimal for our case as using measurements which automatically re-scale and normalize error contributions are favorable for cases where multiple outputs have different scales (<xref ref-type="bibr" rid="B30">30</xref>).</p>
<p>To improve network accuracy, the data set had to undergo several transformations prior to training:</p>
<list list-type="order">
<list-item>
<p>The highly skewed nature of the specific energy spectra warranted the use of the natural logarithm (Ln) transformation which was performed on the entire dataset (<xref ref-type="bibr" rid="B31">31</xref>). Additionally, a value of unity was added to all values prior to the Ln transformation to account for several target outputs with a value of 0. This transformation created an approximately normal distribution in the data, significantly improving NN performance.</p>
</list-item>
<list-item>
<p>A scaling factor of 4, determined by the ratio of z<sub>max</sub>:spectral values, was separately applied to the z<sub>max</sub> value of the data set. Of the 21 network outputs, 20 corresponded to y-values of the spectrum while one output, z<sub>max</sub>, represented the maximum value for the x-axis. In general, the magnitudes of z<sub>max</sub> values were significantly smaller than the other outputs, warranting a scaling factor being applied to ensure the network weights were appropriately updated from errors in z<sub>max</sub> predictions.</p>
</list-item>
</list>
<p>To determine the optimal number of hidden layers/node combinations, an initial empirical approach was employed where, through iterative testing and performance evaluation, it was determined that single-digit-sized layers were suboptimal and resulted in poorer performance. From there, a loop was created to iterate over all possible combinations of nodes in networks containing two hidden layers (double-digit layer sizes). The number of nodes in the first hidden layer ranged from 10-20 to while the number of nodes in the second hidden layer ranged from 10-40. The network was trained for each combination of nodes in the first and second hidden layers, and the root mean squared error (RMSE) was recorded. After this was completed, a minimum was found based on the calculated values. The optimal NN size was determined to be two layers with 10 nodes in the first layer and 26 in the second layer as shown schematically in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>. The final network consisted of a total of 876 adjustable weights and biases. The spectral data were partitioned with 70% of the data used for training, 15% used for validation and 15% used for testing (<xref ref-type="bibr" rid="B32">32</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Schematic diagram of the resultant neural network displaying the 4 input parameters, hidden layers, and resultant output. For the output layer, z<sub>max</sub> indicates the maximum specific energy of the single-event spectrum and provides a scaling factor for the x-axis, while S<sub>1</sub>&#x2026;S<sub>20</sub> indicate the 20 spectral values.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-14-1394671-g002.tif"/>
</fig>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<p>
<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref> shows the regression plots corresponding to the training, validation, and test data for the z<sub>max</sub> value while <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref> shows the resultant graphs for the 20 spectral outputs. For each plot, the x-axis corresponds to the ground truth values which were calculated using MC simulations and the y-axis corresponds to the NN output. The best-fit line is shown along with the R<sup>2</sup> value for each plot. In general, the slope of the best-fit line is close to unity with only small y-offset values. Combined with R<sup>2</sup> &gt; 0.98 for all plots indicates good agreement between actual and predicted values. The RMSE values for z<sub>max</sub> were 1.57 x10<sup>-2</sup>, 1.51 x 10<sup>-2</sup> and 1.35 x 10<sup>-2</sup> for training, validation and testing data, respectively. Similarly, the RMSE values for the spectral output were 0.201, 0.175 and 0.199, respectively. Of note, the z<sub>max</sub> values (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>) show good agreement across the entire range which is important since this value is used to provide accurate scaling of the x-axis for the resultant spectra. <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref> shows some deviations for smaller spectral values (&lt; 0.1). However, differences on this scale do not significantly alter the spectra nor impact the area-under-the-curve of these spectra. As shown in <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>, these spectra typically have values ranging from 1-10 cGy<sup>-1</sup>. Hence small deviations on the order of 0.1 or less do not have a large impact on the spectrum, nor in calculating the area-under-the-curve.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Regression plots demonstrating the degree of agreement between predicted values and known values for z<sub>max</sub> for <bold>(A)</bold> training; <bold>(B)</bold> validation and <bold>(C)</bold> testing data. Each point represents actual value (x-axis) and the value predicted by the network (y-axis).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-14-1394671-g003.tif"/>
</fig>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Regression plots demonstrating the degree of agreement between predicted values and known values for the single-event spectra values for <bold>(A)</bold> training; <bold>(B)</bold> validation and <bold>(C)</bold> testing data. Each point represents actual value (x-axis) and the value predicted by the network (y-axis).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-14-1394671-g004.tif"/>
</fig>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Sample network output graphs illustrating agreement between predicted values and known values for <bold>(A)</bold> source within the cell nucleus; <bold>(B)</bold> source on the cell surface; <bold>(C)</bold> source in the cell cytoplasm; <bold>(D)</bold> source outside of the cell; <bold>(E)</bold> uniform everywhere; <bold>(F)</bold> uniform everywhere except the nuclei; <bold>(G)</bold> in a spherical shell between the cell membrane and 1.25 times the cell nucleus radius; <bold>(H)</bold> only in the cytoplasm. Graph <bold>(A)</bold> energy: 3.97 MeV, nucleus size: 5 &#x3bc;m, cell size: 10 &#x3bc;m; <bold>(B)</bold> energy: 4.34 MeV, nucleus size: 7.02 &#x3bc;m, cell size: 11.06 &#x3bc;m; <bold>(C)</bold> energy: 5.867 MeV, nucleus size: 6 &#x3bc;m, cell size: 12 &#x3bc;m; d) energy: 6.05 MeV, nucleus size: 8 &#x3bc;m, cell size: 15 &#x3bc;m; <bold>(E)</bold> energy: 8.4 MeV, nucleus size: 6 &#x3bc;m, cell size: 7.5 &#x3bc;m; <bold>(F)</bold> energy: 6.9 MeV, nucleus size: 5.5 &#x3bc;m, cell size: 11 &#x3bc;m; <bold>(G)</bold> energy: 8.6 MeV, nucleus size: 6.5 &#x3bc;m, cell size: 13 &#x3bc;m; <bold>(H)</bold> energy: 3.97 MeV, nucleus size: 6 &#x3bc;m, cell size: 9 &#x3bc;m.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-14-1394671-g005.tif"/>
</fig>
<p>The single-event specific-energy spectra generated by the network are compared with MC data for a random sample of test data in <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>. All graphs have an area under the curve of unity. The solid blue line represents the MC data while the orange dots superimposed on the line represent the NN outputs. In general, good agreement between the NN and MC data is noted for all source-target geometries.</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>A schematic diagram showing a two-dimensional representation of the cell geometry used for Monte Carlo calculations. The cell nucleus has a radius r<sub>n</sub> and the maximum angle that an alpha particle at point x,y subtends with the cell nucleus is given by &#x3b8;max. The distance from the point of emission to the center of the nucleus is given by d<sub>t</sub>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-14-1394671-g006.tif"/>
</fig>
<fig id="f7" position="float">
<label>Figure&#xa0;7</label>
<caption>
<p>Comparison on ICRU 90 range-energy relationship for alpha particles with the curve fit based on interpolating polynomials in <xref ref-type="disp-formula" rid="eqA.2">Equations A.2</xref> and <xref ref-type="disp-formula" rid="eqA.3">A.3</xref> (R<sup>2</sup> = 0.999).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-14-1394671-g007.tif"/>
</fig>
<p>
<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref> shows the error distribution for tabulated &lt;z<sub>1</sub>&gt; and &lt;z<sub>1</sub>
<sup>2</sup>&gt; using <xref ref-type="disp-formula" rid="eq3">Equations 3</xref>, <xref ref-type="disp-formula" rid="eq4">4</xref> based on the spectra generated using the NN vs. those generated from MC spectra. The mean for all three partitions (training, validation, and test) was centered near 0 with the &lt;z<sub>1</sub>
<sup>2</sup>&gt; mean % error being slightly larger than the &lt;z<sub>1</sub>&gt; mean % error. The mean percent error for the training set was 0.14% for &lt;z<sub>1</sub>&gt; and 0.20% for &lt;z<sub>1</sub>
<sup>2</sup>&gt;. For testing, the average &lt;z<sub>1</sub>&gt; error was 0.08% and &lt;z<sub>1</sub>
<sup>2</sup>&gt; was 0.09%. The standard deviation (SD) and range of values also followed similar trends with &lt;z<sub>1</sub>
<sup>2</sup>&gt; values being higher in all cases. The center of the values allowed for an approximately normal distribution and as a result a 95% confidence interval was calculated.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Statistics summarizing the percent difference between &lt;z<sub>1</sub>&gt; and &lt;z<sub>1</sub>
<sup>2</sup>&gt; calculated from single-event spectra predicted by the network vs. published Monte Carlo simulation values. SD = standard deviation.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center" rowspan="2"/>
<th valign="top" colspan="2" align="center">Training</th>
<th valign="top" colspan="2" align="center">Validation</th>
<th valign="top" colspan="2" align="center">Testing</th>
</tr>
<tr>
<th valign="top" align="center">&lt;z<sub>1</sub>&gt;</th>
<th valign="top" align="center">&lt;z<sub>1</sub>
<sup>2</sup>&gt;</th>
<th valign="top" align="center">&lt;z<sub>1</sub>&gt;</th>
<th valign="top" align="center">&lt;z<sub>1</sub>
<sup>2</sup>&gt;</th>
<th valign="top" align="center">&lt;z<sub>1</sub>&gt;</th>
<th valign="top" align="center">&lt;z<sub>1</sub>
<sup>2</sup>&gt;</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="center">Mean % Error</td>
<td valign="top" align="center">0.14%</td>
<td valign="top" align="center">0.20%</td>
<td valign="top" align="center">-0.05%</td>
<td valign="top" align="center">-0.06%</td>
<td valign="top" align="center">0.08%</td>
<td valign="top" align="center">0.09%</td>
</tr>
<tr>
<td valign="top" align="center">% Error SD</td>
<td valign="top" align="center">2.77%</td>
<td valign="top" align="center">4.17%</td>
<td valign="top" align="center">2.82%</td>
<td valign="top" align="center">4.25%</td>
<td valign="top" align="center">2.46%</td>
<td valign="top" align="center">3.69%</td>
</tr>
<tr>
<td valign="top" align="center">95% Confidence Interval</td>
<td valign="top" align="center">[-4.29%, 5.99%]</td>
<td valign="top" align="center">[-6.48%, 8.82%]</td>
<td valign="top" align="center">[-5.02%, 4.83%]</td>
<td valign="top" align="center">[-7.24%, 7.49%]</td>
<td valign="top" align="center">[-4.71%, 5.15%]</td>
<td valign="top" align="center">[-6.67%, 7.93%]</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<p>In this study we developed a NN capable of producing single-event specific energy spectra (f<sub>1</sub>(z<sub>1</sub>)) for single cells in suspension from 8 different source-target geometries. Overall, the resultant spectra showed good agreement with the MC generated values. Most notably, the generated single-event spectra qualitatively and quantitatively demonstrate the strength of this approach. In particular, comparing the results across the various source-target spectra indicate the network was able to learn from the training set and predict the output spectra. <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref> shows that the network is equally capable of learning to produce simplistic spectra (i.e., sources located in the nucleus, cytoplasm, and cell surface) as well are more complex spectra (i.e., source located outside the cell). The consistency in accuracy going from simple to more complex spectra serves as a proof of principle for the success of the NN.</p>
<p>In addition to calculating the single-event spectra, we also calculated &lt;z<sub>1</sub>&gt; and &lt;z<sub>1</sub>
<sup>2</sup>&gt; values. The use of these moments can simplify calculations, such as predicting cell survival given an inherent cell sensitivity, z<sub>o</sub> (<xref ref-type="bibr" rid="B20">20</xref>). The ranges of errors in the &lt;z<sub>1</sub>&gt; and &lt;z<sub>1</sub>
<sup>2</sup>&gt; values proved consistent with previously published values for deviations between MC and analytically tabulated values (<xref ref-type="bibr" rid="B27">27</xref>). In the prior study, these differences ranged from roughly &#x2212;2% to 3% for &lt;z<sub>1</sub>&gt; and &#x2212;4% to 6% for &lt;z<sub>1</sub>
<sup>2</sup>&gt; (<xref ref-type="bibr" rid="B27">27</xref>). The errors associated with these values are consistent with those produced using a NN trained specifically on &lt;z<sub>1</sub>&gt; and &lt;z<sub>1</sub>
<sup>2</sup>&gt; where the standard deviation in errors for &lt;z<sub>1</sub>&gt; ranged from 1.5-2.1%, while the standard deviation in errors for &lt;z<sub>1</sub>
<sup>2</sup>&gt; ranged from 2.6-4.0% (<xref ref-type="bibr" rid="B24">24</xref>). Our previous study showed that errors of this magnitude result in an uncertainty in cell survival estimation on the order of +/-3% over a broad range of z<sub>o</sub> values (<xref ref-type="bibr" rid="B24">24</xref>). These errors are well within the uncertainties of cell survival assays.</p>
<p>The data used to train the network was generated primarily through MC data. In theory, the NN is not limited to using MC data, as it can potentially use data from any source, including measured spectral data (<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B34">34</xref>). In this case, the smoothing feature associated with the network may be advantageous as it may reduce some of the inherent experimental error. Moreover, using experimental data allows one to compare the network output to direct measurement, as opposed to comparing against MC-based spectra which may be limited by the assumptions used in the simulation. However, experimental microdosimetric data are often limited, and hence the validation of this proposition is beyond the scope of this study.</p>
<p>An important consideration is that the network is only able to generate single-event spectra for a single geometry at a time. If one were interested in a more complex spectrum, such as those due to a source in the nucleus and cytoplasm, or from multiple alpha particle energies, the network would not be able to produce this directly. Rather, the individual spectra for each source/target configuration and/or energy would need to be generated independently. The composite single-event spectrum would be determined by integrating the individual spectra weighted by the number of alpha particles emitted over the sub-volume (<xref ref-type="bibr" rid="B13">13</xref>). Alternatively, if only the individual moments would be required (such as to estimate mean dose and variance in specific energy, or cell survival), these can be calculated from the individual spectra and combined based on the average number of hits from each component (<xref ref-type="bibr" rid="B20">20</xref>).</p>
<p>A notable limitation of the current neural network is its restriction to generating single-event specific energy spectra only for the geometries it was explicitly trained on. This limitation arises as the network&#x2019;s ability to predict spectra is inherently dependent on the configurations it was trained on. As a result, if we were to task the network with generating spectra for an entirely new geometry which it has not encountered before, the network would likely fail to produce accurate results. This is because it lacks the necessary learned patterns to process and generate outputs for untrained geometries. This limitation, however, highlights an opportunity for future development. By expanding the training dataset to encompass a broader array of geometries, the network could be made more adaptable, allowing it to handle a wider variety of configurations.</p>
</sec>
</body>
<back>
<sec id="s5" sec-type="data-availability">
<title>Data availability statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s6" sec-type="author-contributions">
<title>Author contributions</title>
<p>LA: Formal analysis, Software, Validation, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing. JL: Data curation, Formal analysis, Resources, Writing &#x2013; review &amp; editing. PG: Data curation, Writing &#x2013; review &amp; editing. JR: Conceptualization, Project administration, Supervision, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing.</p>
</sec>
<sec id="s7" sec-type="funding-information">
<title>Funding</title>
<p>The author(s) declare that no financial support was received for the research, authorship, and/or publication of this article.</p>
</sec>
<sec id="s8" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
<p>The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.</p>
</sec>
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<title>Publisher&#x2019;s note</title>
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<app-group>
<app id="app1">
<title>Appendix</title>
<p>The algorithm used for generating single-event specific-energy spectra is based on prior studies (<xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B27">27</xref>). The input for the simulation consists of the alpha particle energy, cell (r<sub>c</sub>) and nuclear (r<sub>n</sub>) radii and source-target geometry. Eight source-target geometries are considered with activity confined to the cell nucleus, cytoplasm, cell surface or outside the cell for cells in suspension as well as activity that is uniform everywhere, activity that is uniform everywhere except in the cell nucleus, activity located on the cell surfaces and activity only in the cell cytoplasm for cells packed in planes (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). In each case, the nucleus and cell are assumed to be spherical and concentric.</p>
<p>Based on a random number generation, the radial position of the alpha particle decay is generated depending on the chosen source-target geometry for each particle simulated. Only the radial position is required (which increases calculation efficiency) due to the spherical symmetry. Additionally, since the alpha particle has a finite range, only those emissions within a distance of the alpha particle range plus the nuclear radius need to be considered. Each alpha particle emission is assumed to travel in a straight line consistent with previous studies (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B27">27</xref>, <xref ref-type="bibr" rid="B35">35</xref>). Additionally, delta rays are neglected as their range is much smaller than the nuclei sizes considered in this study (<xref ref-type="bibr" rid="B6">6</xref>). For each alpha particle that is simulated, a random angle is generated. If the source is located in the cell nucleus, then the distance to the cell nucleus surface is calculated. If the emission occurs outside the nucleus (in cytoplasm, cell surface or outside the cell), the maximum angle that the point of emission subtends with the nucleus is calculated as follows:</p>
<disp-formula id="eq1a">
<label>(A.1)</label>
<mml:math display="block" id="M1a">
<mml:mrow>
<mml:mtext>cos</mml:mtext>
<mml:mrow>
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<mml:mrow>
<mml:msub>
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<mml:mtext>max</mml:mtext>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msqrt>
<mml:mrow>
<mml:msubsup>
<mml:mi>d</mml:mi>
<mml:mtext>t</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
<mml:mo>&#x2212;</mml:mo>
<mml:msubsup>
<mml:mi>r</mml:mi>
<mml:mtext>n</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:msqrt>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>d</mml:mi>
<mml:mtext>t</mml:mtext>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>d</italic>
<sub>t</sub> is the distance from the point of emission to the center of the cell nucleus (<xref ref-type="bibr" rid="B24">24</xref>, <xref ref-type="bibr" rid="B27">27</xref>) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>). To determine if the alpha particle emission will hit the nucleus, the product of the unitary vectors defining the alpha particle emission is determined. If this value is &lt; cos(&#x3b8;<sub>max</sub>), then the alpha particle will hit the nucleus. For cases where the alpha particle will hit the nucleus, two intercepts are calculated corresponding to where the alpha particle enters and exits the nucleus, respectively. The difference between the range of the alpha particle and the distance it travels to where it intercepts the nucleus is defined as the residual range (R<sub>res</sub>). For cases where the range of the alpha particle is not long enough to exit the nucleus, only the distance until the alpha particle stops in the nucleus is considered.</p>
<p>The energy deposited in the nucleus is based on the range/energy relationship for alpha particles in water from ICRU 49 (<xref ref-type="bibr" rid="B36">36</xref>) with the curve fit (<xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B37">37</xref>) for this relationship given by:</p>
<disp-formula id="eqA.2">
<label>(A.2)</label>
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</mml:msup>
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<mml:mn>1.72</mml:mn>
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<mml:mn>2</mml:mn>
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<mml:msub>
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</disp-formula>
<p>In these equations, R<sub>res</sub> represents the residual range of the alpha particle which is the range minus the distance traversed by the particle. E<sub>res</sub> represents the amount of energy of an alpha particle with range R<sub>res</sub>. Specific energy (z) is determined by dividing the energy deposited by the mass of the cell nucleus. This curve fit was also compared with data from the more recent ICRU 90 report (<xref ref-type="bibr" rid="B38">38</xref>). As shown in <xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>, the curve fit agrees well with these data (R<sup>2</sup> = 0.999).</p>
<p>Simulations for geometries a-d (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>) were performed using an Excel spreadsheet (Microsoft, Redmond, WA, USA) (<xref ref-type="bibr" rid="B27">27</xref>). Each simulation used 500,000 particles having a standard error of &lt; 0.2% and was computed in &lt; 3 sec on a standard desktop computer with Intel&#xae; Core&#x2122; iS-10500 CPU @ 3.10 GHz, 3096 MHz, 6 cores and 12 logical processors.  For geometries e-h (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>), the same computer was used with code that simulated emissions for the geometry described (<xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B37">37</xref>). For these cases, the computational times ranged from 60-90 seconds for a simulation with 100,000,000 particles. Of note, the MC spreadsheet simulated significantly fewer particles since all of them intersected the cell nucleus, while the code used for geometries e-h used more particles since the majority of them did not intersect the cell nucleus.</p>
</app>
</app-group>
</back>
</article>