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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Oncol.</journal-id>
<journal-title>Frontiers in Oncology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Oncol.</abbrev-journal-title>
<issn pub-type="epub">2234-943X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fonc.2023.1194972</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Oncology</subject>
<subj-group>
<subject>Brief Research Report</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Human antibody V<sub>H</sub> domains targeting uPAR as candidate therapeutics for cancers</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Chu</surname>
<given-names>Xiaojie</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1432826"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Wei</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1012971"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hines</surname>
<given-names>Margaret G.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2059140"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Lyakhov</surname>
<given-names>Ilya</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2319251"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Mellors</surname>
<given-names>John W.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/703382"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Dimitrov</surname>
<given-names>Dimiter S.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Center for Antibody Therapeutics, Division of Infectious Diseases, Department of Medicine, University of Pittsburgh Medical School</institution>, <addr-line>Pittsburgh, PA</addr-line>, <country>United States</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Comp IL, LLC</institution>, <addr-line>Carnegie, PA</addr-line>, <country>United States</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Abound Bio</institution>, <addr-line>Pittsburgh, PA</addr-line>, <country>United States</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Francesco Sabbatino, University of Salerno, Italy</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Sofia Kossida, Universit&#xe9; de Montpellier, France; Juan C. Almagro, Instituto Polit&#xe9;cnico Nacional, Mexico; Harald Kolmar, Darmstadt University of Technology, Germany</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Xiaojie Chu, <email xlink:href="mailto:xiaojie1003@pitt.edu">xiaojie1003@pitt.edu</email>; Dimiter S. Dimitrov, <email xlink:href="mailto:mit666666@pitt.edu">mit666666@pitt.edu</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>09</day>
<month>10</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>13</volume>
<elocation-id>1194972</elocation-id>
<history>
<date date-type="received">
<day>27</day>
<month>03</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>24</day>
<month>07</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Chu, Li, Hines, Lyakhov, Mellors and Dimitrov</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Chu, Li, Hines, Lyakhov, Mellors and Dimitrov</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The high expression of uPAR has been linked to tumor progression, invasion, and metastasis in several types of cancer. Such overexpression of uPAR makes it a potential target for immunotherapies across common cancers such as breast, colorectal, lung, ovarian cancer, and melanoma. In our study, two high-affinity and specific human V<sub>H</sub> domain antibody candidates, designed as clones 3 and 115, were isolated from a phage-displayed human V<sub>H</sub> antibody library. Domain-based bispecific T- cell engagers (DbTE) based on these two antibodies exhibited potent killing of uPAR-positive cancer cells. Thus, these two anti-uPAR domain antibodies are promising candidates for treating uPAR positive cancers.</p>
</abstract>
<kwd-group>
<kwd>therapeutic antibody</kwd>
<kwd>VH domain</kwd>
<kwd>human uPAR</kwd>
<kwd>DbTE (domain based bispecific T cell engager)</kwd>
<kwd>cancer</kwd>
</kwd-group>
<counts>
<fig-count count="2"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="38"/>
<page-count count="7"/>
<word-count count="3418"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Cancer Immunity and Immunotherapy</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Urokinase-type plasminogen activator receptor (uPAR), also named CD87, is a single-chain membrane glycoprotein receptor containing three homologous domains (D1, D2, and D3) anchored to the cell membrane by a GPI linkage (<xref ref-type="bibr" rid="B1">1</xref>). In normal physiological conditions, uPAR expression is fairly low. This expression, however, can be highly elevated in many types of cancer including breast cancer (<xref ref-type="bibr" rid="B2">2</xref>), colorectal cancer (<xref ref-type="bibr" rid="B3">3</xref>), melanoma (<xref ref-type="bibr" rid="B4">4</xref>, <xref ref-type="bibr" rid="B5">5</xref>), brain cancer (<xref ref-type="bibr" rid="B6">6</xref>), lung cancer (<xref ref-type="bibr" rid="B7">7</xref>), ovarian cancer (<xref ref-type="bibr" rid="B8">8</xref>), prostate cancer (<xref ref-type="bibr" rid="B9">9</xref>), liver cancer (<xref ref-type="bibr" rid="B10">10</xref>), gastric cancer (<xref ref-type="bibr" rid="B11">11</xref>), and pancreatic cancer (<xref ref-type="bibr" rid="B12">12</xref>). uPAR also plays an important role in tumor proliferation, metastasis, angiogenesis, and prognosis (<xref ref-type="bibr" rid="B13">13</xref>). Many studies have revealed that high expression of uPAR is related to poor prognosis and that expression level can serve as a marker of tumor malignancy (<xref ref-type="bibr" rid="B14">14</xref>, <xref ref-type="bibr" rid="B15">15</xref>). Even though several systems are involved, the uPA-uPAR signaling pathway plays a key role from tumor proliferation to metastasis (<xref ref-type="bibr" rid="B16">16</xref>).</p>
<p>The uPA-uPAR-&#x3b1;5&#x3b2;1 integrin complex can bind to G-protein-coupled receptors (GPCRs) or interact with EGFR or PGGFR&#x3b2; to activate focal adhesion kinase (FAK)-MAPK-ERK pathway and PI3K/AKT pathway, which promotes tumor cell proliferation and survival (<xref ref-type="bibr" rid="B17">17</xref>&#x2013;<xref ref-type="bibr" rid="B20">20</xref>). uPAR&#x2019;s expression on the non-malignant cells that infiltrate cancers and on malignant tumor cells adds to its importance in tumor progression and poor prognosis. When uPA is activated after binding to uPAR, plasminogen is cleaved into active plasmin, which further activates MMPs to degrade ECM and regulate cell migration (<xref ref-type="bibr" rid="B21">21</xref>, <xref ref-type="bibr" rid="B22">22</xref>). Moreover, uPAR interacts with VEGFR2 and promotes VEGFR2 internalization, thus enhancing the VEGF-induced angiogenesis (<xref ref-type="bibr" rid="B23">23</xref>, <xref ref-type="bibr" rid="B24">24</xref>). Taken together, uPAR&#x2019;s expression in cancer and importance in tumor make the receptor an attractive therapeutic target for cancer treatment, in addition to prognosis and diagnosis.</p>
<p>The development of monoclonal antibody-based immunotherapy has opened new avenues to specifically target cancer cells expressing certain receptors. Such therapies have become an increasingly attractive option for cancer treatment due to its high efficacy and lower side effects compared to other options such as surgery, radiation, and chemotherapy. In addition to the binding to targeted antigens, antibodies can also mobilize anti-tumor immunity through effector functions. Different antibody structures have been developed in recent decades, including fragment antigen-binding region (Fab), single-chain Fv (scFv) fragments, and domain antibodies (V<sub>H</sub> and V<sub>L</sub>), for tailored applications. Among these formats, antibody heavy chain variable (V<sub>H</sub>) domains have shown increasing promise in antibody-based cancer immunotherapy due to their small size (ranging from 11kDa to 15 kDa), high affinity, high yields, and low immunogenicity. Studies have shown that these lower molecular weight proteins can deeply penetrate tissues, and enabling immunotherapies to target new epitopes that are not accessible to large antibody constructs (<xref ref-type="bibr" rid="B25">25</xref>). Thus, the use of variable domain antibodies may be a powerful prove useful in the development of cancer immunotherapies, especially for solid tumors.</p>
<p>In our current study, we identified two potent human V<sub>H</sub> domain antibodies that target human uPAR. These binders were characterized for their affinity and specificity. The domain-based bispecific T cell engager (DbTE) based on these two binders showed potent killing effects of uPAR-expressing cancer cells. To our knowledge, this is the first report of uPAR-specific human V<sub>H</sub> domain antibodies as candidates for cancer immunotherapy.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Panning of high- affinity V<sub>H</sub> domains against uPAR from large V<sub>H</sub> phage library</title>
<p>Human uPAR-Fc (Catalog # 10378-UK-100) and uPAR-His (Catalog # 807UK100CF) recombinant proteins were purchased from R&amp;D system. To pan antibody candidates against uPAR, a 10<sup>12</sup> large phage-displayed human immunoglobulin heavy chain variable domain (V<sub>H</sub>) library (<xref ref-type="bibr" rid="B26">26</xref>, <xref ref-type="bibr" rid="B27">27</xref>) was used against human IgG1 Fc fused recombinant uPAR. The panning was performed as previously described (<xref ref-type="bibr" rid="B28">28</xref>&#x2013;<xref ref-type="bibr" rid="B30">30</xref>). Briefly, the library were first blocked with 5% milk then incubated with uPAR-Fc following with Protein G magnetic beads (Thermo Fisher). The separated antigen-bound phages were then infected with TG1 for phages expression and amplification. After the first round panning against 5 &#x3bc;g uPAR-Fc, two additional rounds of panning were performed by using consecutively one-fold reduced antigen in each round to increase selective rigidity. 192 individual clones obtained from the final round of panning were screened for binding to uPAR-His protein by ELISA.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Expression and purification of V<sub>H</sub>, V<sub>H</sub>-Fc, and DbTE</title>
<p>To convert V<sub>H</sub> antibody candidates to V<sub>H</sub>-Fc format, the V<sub>H</sub> domain was amplified and cloned into the pcDNA-IgG1 Fc vector. For the construction of DbTE, humanized OKT3 scFv (VH-(G<sub>4</sub>S)<sub>6</sub>-VL) was inserted at the C terminal of V<sub>H</sub> followed by the IgG1 Fc with LALAPG mutation. The expression and purification were performed as previously described (<xref ref-type="bibr" rid="B28">28</xref>). Both the V<sub>H</sub>-Fc and DbTE were transiently transfected and expressed by the Expi293 expression system, then purified by protein A resin (Thermo Fisher). The V<sub>H</sub> binder was expressed in E.coli TopF expression system and purified on Ni-NTA columns (GE Healthcare).</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>ELISA</title>
<p>The binding and specificity of V<sub>H</sub>, V<sub>H</sub>-Fc, and DbTE to uPAR or CD3 were analyzed by ELISA. uPAR-His protein or CD3 protein was coated at 50 ng/well at 4&#xb0;C overnight, then blocked with 5% milk for 1 hours at 37&#xb0;C. After washing 3 times by 0.05% PBST, 3-fold serially diluted V<sub>H</sub> and V<sub>H</sub>-Fc binders were incubated on the plate for 1 hour at 37&#xb0;C. The binding of V<sub>H</sub> candidates was detected by anti-FLAG M2-peroxidase (HRP) antibody (Sigma-Aldrich) while V<sub>H</sub>-Fc or DbTE binding was detected by HRP conjugated goat anti-human IgG1 Fc (Sigma-Aldrich) at 1:1000 dilution. The plates were washed 3 times by 0.05% PBST between each reagents incubation. Binding activity was detected using 3,3&#x2032;,5,5&#x2032;-tetramethylbenzidine (Sigma-Aldrich) and was stopped by TMB stop buffer (ScyTek Laboratories). Absorbance was read at 450 nm.</p>
</sec>
<sec id="s2_4">
<label>2.4</label>
<title>BLItz</title>
<p>DPBS was used to establish a baseline for 30s. Streptavidin biosensors (ForteBio) were coated with 16.7 &#x3bc;g/mL recombinant uPAR-Biotin for 2&#xa0;min. For competition assay, 500nM of V<sub>H</sub> 3 were used for association and monitored for 2&#xa0;min, then 500nM of V<sub>H</sub> 115 were used for continuing association and monitored for 2&#xa0;min. For affinity assay, 400nM, 200nM and 100nM of V<sub>H</sub>, V<sub>H</sub>-Fc, and DbTE were used separately for association and monitored for 2min. Dissociation was monitored in DPBS for 4&#xa0;min.</p>
</sec>
<sec id="s2_5">
<label>2.5</label>
<title>Size exclusion chromatography</title>
<p>The aggregation of the antibodies were analyzed by Superdex 200 Increase 10/300 GL chromatography (GE Healthcare, Chicago, IL, USA) as previously described (<xref ref-type="bibr" rid="B28">28</xref>). 200 &#x3bc;g of filtered antibodies were analyzed and eluted by DPBS buffer at a flow rate of 0.5 mL/min.</p>
</sec>
<sec id="s2_6">
<label>2.6</label>
<title>Cells</title>
<p>Expi293 cells (Thermo Fisher) were maintained in an Expi293 expression medium supplemented with 0.4% penicillin-streptomycin (P/S). 293T cells and A375 human melanoma cells were purchased from ATCC and were maintained in DMEM medium supplemented with 10% FBS and 1% P/S separately. T cells were isolated from healthy donor&#x2019;s PBMCs (Zen-Bio) by using the human Pan T cell isolation kit (Miltenyi Biotec) and activated by CD3/CD28 T cell activator Dyna beads (Gibco) at 1:1 cell-bead ratio for 48&#xa0;h. The activated T cells were used for the cytotoxicity assay of the DbTE antibody.</p>
</sec>
<sec id="s2_7">
<label>2.7</label>
<title>Flow cytometry</title>
<p>The cell surface expression level of uPAR protein was detected by a commercial antibody. 2 &#xd7;10<sup>5</sup> cells/test were stained with mouse anti-human uPAR antibody (R&amp;D systems, Catalog# MAB807) or an isotype antibody for 30&#xa0;min at 4 &#xb0;C followed by PE-conjugated anti-mouse IgG secondary antibody. To verify the cell surface binding of the isolated antibody, cells were incubated with V<sub>H</sub>-Fc 3 or V<sub>H</sub>-Fc 115 at a concentration of 50 nM, or V<sub>H</sub> 3 or V<sub>H</sub> 115 at a concentration of 1 &#xb5;M for 30&#xa0;min at 4 &#xb0;C. Cells were then stained with a secondary antibody, goat anti-human IgG (&#x3b3;-chain specific)-PE (Sigma-Aldrich, 1:250, Catalog# P9170) for V<sub>H</sub>-Fc or anti-Flag-APC (Miltenyi Biotec, Catalog#130-119-584) for V<sub>H</sub>. An irrelevant V<sub>H</sub>-Fc and V<sub>H</sub> were used as isotype controls.</p>
</sec>
<sec id="s2_8">
<label>2.8</label>
<title>Cytotoxicity assays</title>
<p>The cell cytotoxicity of anti-uPAR DbTE was measured by LDH-Glo cytotoxicity assay kit (Promega) following the manufacturer&#x2019;s instructions. Target cells (1 &#xd7;10<sup>4</sup> cells/well) and activated T cells were seeded in a 96-well plate at an E: T ratio 10:1, mixed with serially diluted DbTE antibodies in a growth medium, and incubated for 24h at 37&#xb0;C in 5% CO<sub>2</sub> humidified atmosphere. The final volume was 100 &#x3bc;l/well. The cell supernatant was diluted 20-fold and incubated for 50&#xa0;min for LDH assay setup. The calculation of relative % cytotoxicity is as follows: relative % cytotoxicity = 100 &#xd7; (Experimental LDH release &#x2013; Target and effector cell only)/(maximum LDH release control &#x2013; Background).</p>
</sec>
<sec id="s2_9">
<label>2.9</label>
<title>Statistical analysis</title>
<p>Statistical analyses were performed by GraphPad Prism. Differences were considered statistically significant when <italic>p</italic>&lt; 0.05. Significance was tested using two-way ANOVA, followed by Tukey&#x2019;s multiple comparisons tests. ****, <italic>p</italic>&lt;0.0001.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<sec id="s3_1">
<label>3.1</label>
<title>Selection and characterization of high-affinity V<sub>H</sub> antibodies against human uPAR</title>
<p>A large phage-displayed human V<sub>H</sub> library was used to pan against recombinant human uPAR protein for antibody selection. Several V<sub>H</sub> binders were identified after three rounds of panning. Two antibodies, designated as V<sub>H</sub> 3 and V<sub>H</sub> 115, were selected based on their high affinity, specificity, and other desirable properties. The amino acid sequence of these two binders are shown in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>. The EC<sub>50</sub> values of V<sub>H</sub> 3 and V<sub>H</sub> 115 as determined by ELISA were 12.1 &#xb1; 0.8nM and 34.2 &#xb1; 3.5 nM, respectively (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>). The equilibrium dissociation constant (K<sub>D</sub>) values were 17.1 nM and 1.7 nM respectively as determined by BLItz (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). Additionally, these two binders did not bind to BSA at high concentrations of 66.7 &#x3bc;M, and their binding affinity are not affected in the presence of serum, indicating their specificity for uPAR (data not shown). The competition BLItz experiment showed that V<sub>H</sub> 3 and V<sub>H</sub> 115 target different binding epitopes on human uPAR (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>). To increase the binders&#x2019; half-life and avidity, the two V<sub>H</sub> binders were converted to V<sub>H</sub>-Fc format by fusing IgG1 Fc into the C-terminal of V<sub>H</sub>. The EC<sub>50</sub> values of V<sub>H</sub>-Fc 3 and V<sub>H</sub>-Fc 115 as detected by ELISA were 64.3 &#xb1; 2.3 nM and 6.6 &#xb1; 0.2 nM, respectively (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>). The KD values were 9.6 nM and 71.1 nM, respectively as determined by BLItz (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). To verify the specificity of these binders to uPAR expressed on the cell surface, the surface expression of uPAR on parental 293T cells, 293T cells isogenically expressing uPAR (293T-uPAR), or A375 cells (human melanoma cell line intrinsically express uPAR) were verified by a commercial anti-human uPAR antibody. Among these cells, 293T cells (MFI of isotype vs positive uPAR Ab is 62 vs 126) showed a low expression of uPAR while 293T-uPAR cells (MFI of isotype vs positive uPAR Ab is 46.4 vs 176) and A375 cells (MFI of isotype vs positive uPAR Ab is 71.3 vs 4775) showed a high expression level of uPAR (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>). Next, the binding specificity of our newly identified binders was tested on the above cell lines. The two V<sub>H</sub> and V<sub>H</sub>-Fc binders showed a high binding to both 293T-uPAR and A375 cells, while a low level of binding to 293T cells (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>). These results were consistent with the expression level of uPAR on these cell lines. Moreover, both V<sub>H</sub>-Fc binders bound to the 293T-uPAR cells in a concentration-dependent manner and the estimated on-cell binding avidity of V<sub>H</sub>-Fc 3 and V<sub>H</sub>-Fc 115 were 43.1nM and 10.3nM, respectively (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1C</bold>
</xref>). Protein folding was assessed by the size-exclusion chromatography (SEC). Based on the molecular weight calibration curves, while V<sub>H</sub> 3 and V<sub>H</sub>-Fc 3 exhibit monomeric folding, V<sub>H</sub> 115 and V<sub>H</sub>-Fc 115 both showed a dimeric folding (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1D</bold>
</xref>). The late-elution peaks may be due to VH interaction with the column agarose matrix. The stability of these VH domains are further enhanced after converting to the VH-Fc format. We found that the VH-Fc proteins exhibit homogenous folding peaks. The Fc fragments may help to stabilize the VH domain.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Amino acid sequence of human uPAR antibodies.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="left">Antibody</th>
<th valign="middle" align="center">Amino Acid Sequence</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="left">V<sub>H</sub> 3</td>
<td valign="middle" align="left">EVQLVESGGGLVQPGGSLRLSCAASGFTFSRYWMSWVRQAPGKALEWIGEINHSGSTNYNPSLKSLVTISRDNSKNTLYLQMNSLRAEDTATYYCARSLV<break/>PALSYYYYYGMDVWGQGTTVTVSS</td>
</tr>
<tr>
<td valign="middle" align="left">V<sub>H</sub> 115</td>
<td valign="middle" align="left">EVQLVESGGGLVQPGGSLRLSCKGSGFTFGDYAIGWVRQAPGQRLEWIGWINTNSGSPKYAQGFTGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCATD<break/>VVVPWGQGSQVTVSS</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Specificity of V<sub>H</sub>/V<sub>H</sub>-Fc with human uPAR on cell surface <bold>(A)</bold> Anti-uPAR V<sub>H</sub> and V<sub>H</sub>-Fc binding to recombinant human uPAR measured by ELISA (left), and competition BLItz of V<sub>H</sub> 3 with V<sub>H</sub> 115 at 500nM for binding to uPAR (right); <bold>(B)</bold> Cell surface detection of uPAR by commercial mouse anti-uPAR antibody, V<sub>H</sub> 3 and 115 (1&#x3bc;M), and V<sub>H</sub>-Fc 3 and 115 (50nM) on 293T, 293T-uPAR, and A375 cells measured by Flow cytometry; <bold>(C)</bold> Dose-dependent cell surface binding of V<sub>H</sub>-Fc 3 and 115 on 293T-uPAR cells. <bold>(D)</bold> Aggregation evaluation of V<sub>H</sub> 3 and V<sub>H</sub>-Fc 3 (left), V<sub>H</sub> 115 and V<sub>H</sub>-Fc 115 (right) measured by SEC.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-13-1194972-g001.tif"/>
</fig>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>BLItz results of human uPAR antibodies.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="left">Antibody</th>
<th valign="middle" align="center">k<sub>on</sub> (M<sup>&#x2212;1</sup>s<sup>&#x2212;1</sup>)<sup>1</sup>
</th>
<th valign="middle" align="center">k<sub>off</sub> (s<sup>&#x2212;1</sup>)<sup>1</sup>
</th>
<th valign="middle" align="center">K<sub>D</sub> (nM)<sup>1</sup>
</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="left">V<sub>H</sub> 3</td>
<td valign="middle" align="left">7.9 &#xd7; 10<sup>4</sup> &#xb1; 5.7 &#xd7; 10<sup>2</sup>
</td>
<td valign="middle" align="left">1.4 &#xd7; 10<sup>-3</sup> &#xb1; 1.9 &#xd7; 10<sup>-5</sup>
</td>
<td valign="middle" align="left">17.1</td>
</tr>
<tr>
<td valign="middle" align="left">V<sub>H</sub>-Fc 3</td>
<td valign="middle" align="left">1.2 &#xd7; 10<sup>5</sup> &#xb1; 2.3 &#xd7; 10<sup>3</sup>
</td>
<td valign="middle" align="left">1.2 &#xd7; 10<sup>-3</sup> &#xb1; 4.8 &#xd7; 10<sup>-5</sup>
</td>
<td valign="middle" align="left">9.6</td>
</tr>
<tr>
<td valign="middle" align="left">DbTE 3</td>
<td valign="middle" align="left">1.1 &#xd7; 10<sup>5</sup> &#xb1; 1.5 &#xd7; 10<sup>3</sup>
</td>
<td valign="middle" align="left">7.2 &#xd7; 10<sup>-4</sup> &#xb1; 2.7 &#xd7; 10<sup>-5</sup>
</td>
<td valign="middle" align="left">6.6</td>
</tr>
<tr>
<td valign="middle" align="left">V<sub>H</sub> 115</td>
<td valign="middle" align="left">2.1 &#xd7; 10<sup>4</sup> &#xb1; 2.9 &#xd7; 10<sup>2</sup>
</td>
<td valign="middle" align="left">3.6 &#xd7; 10<sup>-5</sup> &#xb1; 1.3 &#xd7; 10<sup>-5</sup>
</td>
<td valign="middle" align="left">1.7</td>
</tr>
<tr>
<td valign="middle" align="left">V<sub>H</sub>-Fc 115</td>
<td valign="middle" align="left">3.3 &#xd7; 10<sup>4</sup> &#xb1; 1.5 &#xd7; 10<sup>3</sup>
</td>
<td valign="middle" align="left">2.4 &#xd7; 10<sup>-3</sup> &#xb1; 5.6 &#xd7; 10<sup>-5</sup>
</td>
<td valign="middle" align="left">71.1</td>
</tr>
<tr>
<td valign="middle" align="left">DbTE 115</td>
<td valign="middle" align="left">3.6 &#xd7; 10<sup>4</sup> &#xb1; 4.1 &#xd7; 10<sup>2</sup>
</td>
<td valign="middle" align="left">4.2 &#xd7; 10<sup>-5</sup> &#xb1; 1.6 &#xd7; 10<sup>-5</sup>
</td>
<td valign="middle" align="left">1.2</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<sup>1</sup>Mean kinetic rate constants (k<sub>on,</sub> k<sub>off</sub>) and equilibrium dissociation constants (K<sub>D</sub> = k<sub>off</sub>/k<sub>on</sub>) were determined from curve fitting analyses of BLItz results.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>V<sub>H</sub> domains-based T cell engagers (DbTEs) show potent cytotoxicity against uPAR expressing cells</title>
<p>As a proof of concept, we generated and assessed the cell cytotoxicity of anti-uPAR domain antibody-based bispecific T cell engagers (DbTEs) against uPAR expressing cancer cells. To construct DbTE, we fused VH domains to the humanized anti-CD3 antibody OKT3 scFv, which is in frame to the human IgG1 Fc with Fc&#x3b3;R binding silencing mutations (LALAPG). The EC<sub>50</sub> of DbTE 3 and 115 for binding to the recombinant human uPAR protein as tested by ELISA were 7.7 &#xb1; 0.4 nM and 28 &#xb1; 2.1 nM, respectively (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>). The EC<sub>50</sub> of DbTE 3 and 115 for binding to the human CD3 protein as tested by ELISA were 28.8 &#xb1; 1.8 nM and 8.7 &#xb1; 0.6 nM, respectively (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>). The KD values of DbTE 3 and 115 were 6.6 nM and 1.2 nM, respectively (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). DbTE binding to A375 tumor cells and T cells was verified by flow cytometry (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>). Next, T- cell-mediated cytotoxicity against uPAR positive cancer cells induced by each DbTE was assessed using an LDH assay. Dose-dependent lysis was observed at the E: T ratio of 10:1 on 293T (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2D</bold>
</xref>), 293T-uPAR cells (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2E</bold>
</xref>), and A375 cells (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2F</bold>
</xref>) mediated by DbTE 3 or DbTE 115.&#xa0;A lower level of lysis was observed with 293T cells, consistent its lower level of uPAR on the cell surface. Moreover, DbTE 3 appear to be more effective than DbTE 115 at low concentrations. The estimated cell killing IC<sub>50</sub> of DbTE 3 and 115 on 293T cells were 0.3 &#xb1; 0.3 nM and 1.1nM &#xb1; 0.3 nM respectively, on 293T-uPAR cells were 0.07 &#xb1; 0.6 nM and 0.4 &#xb1; 0.2 nM respectively, and on A375 cells were 0.06 &#xb1; 0.5 nM and 0.5 &#xb1; 0.2 nM respectively.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>
<italic>In vitro</italic> cytotoxicity of T cells to uPAR-expressing cells by anti-uPAR DbTE. <bold>(A, B)</bold> DbTE 3 and 115 binding to uPAR <bold>(A)</bold> and CD3 <bold>(B)</bold> measured by ELISA. <bold>(C)</bold> Cell binding of 100nM DbTE 3 and 115 on A375 cells and T cells tested by flow cytometry. <bold>(D-F)</bold> Percent relative lysis of 293T cells <bold>(D)</bold>, 293T-uPAR cells <bold>(E)</bold>, and A375 cells <bold>(F)</bold> by T cells mediated by DbTE 3 and 115, respectively. T cells and target cells were added at E: T ratio of 10:1 and simultaneously treated with serially diluted DbTE antibodies for 24h. Experiment was repeated two times. Values were reported as the mean of percent relative lysis &#xb1; SD. Significance was tested by using two-way ANOVA, followed by Tukey&#x2019;s multiple comparisons test. ****p&lt;0.0001.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-13-1194972-g002.tif"/>
</fig>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<p>uPAR is a glycoprotein receptor that is highly expressed in many solid cancers including breast, lung, prostate, ovarian, and liver cancer. Moreover, uPAR is also highly expressed on stromal cells in the tumor microenvironment, such as vascular endothelial cells, tumor-related fibroblasts, and macrophages. The multifunctionality of uPAR ranging from tumor progression, invasion, and angiogenesis to metastasis makes it an ideal target for cancer therapy. Currently, several antibody-based therapies targeting uPAR performed in preclinical showed promising effects in breast cancer (<xref ref-type="bibr" rid="B31">31</xref>, <xref ref-type="bibr" rid="B32">32</xref>) but there have no antibody-based therapies targeting uPAR in clinical trials yet. However, several diagnostic clinical trials detecting uPAR for cancer and metastasis have demonstrate safe and clinical potential (<xref ref-type="bibr" rid="B33">33</xref>&#x2013;<xref ref-type="bibr" rid="B35">35</xref>). Hence, characterization of novel antibodies with diverse affinity, specificity, and size may be useful in the treatment of cancers with high uPAR expression.</p>
<p>In our study, we selected and characterized two fully human V<sub>H</sub> domain antibodies that target uPAR. Both antibodies showed high affinity for uPAR. By analyzing the sequence using IMGT/DomainGapAlign, the V<sub>H</sub> 3 and 115 showed 81.6% and 78.4% identity with IGHV 3-23*04 germline, separately. The CDR-IMGT lengths of V<sub>H</sub> 3 and V<sub>H</sub> 115 are [8.7.18] and [8.8.7]. Converting the antibodies to V<sub>H</sub>-Fc fusion protein enhanced the avidity of V<sub>H</sub> 3 by 2-fold, but decreased avidity 40-fold in V<sub>H</sub> 115 (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>). This decrease may be due to the aggregation. Further antibody maturation of V<sub>H</sub> 115 to decrease the aggregation is needed. The killing effects of DbTEs based on these two antibodies showed specific cell killing on cells with observable expression levels of uPAR, demonstrating their potential for cancer immunotherapies. Lower killing effects were observed when targeting 293T cells with lower uPAR expression levels compared with the 293T-uPAR overexpressing cell line (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2D, E</bold>
</xref>). These findings warrant further characterization of these antibodies&#x2019; specificity, efficacy, and toxicity as well as comparison with other uPAR IgG antibodies for cancer inhibition <italic>in vivo</italic> and the application potential of domain antibodies. Moreover, further investigation is needed to observe the ability of these antibodies to block the uPAR-uPA signaling pathway.</p>
<p>Recent studies have also shown that uPAR is associated with senescence-associated pathologies (<xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B37">37</xref>). Further development of these antibodies as senolytic reagents may increase their potential for treating senescence-related diseases, such as fibrin-associated inflammation and liver fibrosis (<xref ref-type="bibr" rid="B38">38</xref>). In summary, the anti-uPAR antibodies described above showed significant potential in heavy chain variable domain antibody-based immunotherapies and may be useful in targeting diseases related to the elevated expression level of uPAR.</p>
</sec>
<sec id="s5" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/supplementary material. Further inquiries can be directed to the corresponding authors.</p>
</sec>
<sec id="s6" sec-type="ethics-statement">
<title>Ethics statement</title>
<p>Ethical approval was not required for the studies on humans in accordance with the local legislation and institutional requirements because only commercially available established cell lines were used.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>DD, JM, and XC conceived and designed the research. XC identified and characterized antibodies, designed and performed functions assays. WL made V<sub>H</sub> phage libraries. XC wrote the draft of the article. WL, MH, IL, JM, and DD revised the manuscript. All authors discussed the results and contributed to the final manuscript.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by the UPMC.</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We would like to thank the members of the Center for Antibody Therapeutics for their helpful discussions.</p>
</ack>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>XC, WL, JM, and DD are co-inventors of a patent, submitted by University of Pittsburgh, related to the antibodies described in this paper. IL was employed by the company Comp IL, LLC. JWM and DSD were employed by the company Abound Bio.</p>
<p>The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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