<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" article-type="research-article" dtd-version="2.3" xml:lang="EN">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Oncol.</journal-id>
<journal-title>Frontiers in Oncology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Oncol.</abbrev-journal-title>
<issn pub-type="epub">2234-943X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fonc.2022.869393</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Oncology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Engineering Cancer/Testis Antigens With Reversible <italic>S-</italic>Cationization to Evaluate Antigen Spreading</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Miyamoto</surname>
<given-names>Ai</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Honjo</surname>
<given-names>Tomoko</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Masui</surname>
<given-names>Mirei</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kinoshita</surname>
<given-names>Rie</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1711063"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kumon</surname>
<given-names>Hiromi</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kakimi</surname>
<given-names>Kazuhiro</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1499888"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Futami</surname>
<given-names>Junichiro</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1595252"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Interdisciplinary Science and Engineering in Health Systems, Okayama University</institution>, <addr-line>Okayama</addr-line>, <country>Japan</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Cell Biology, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences</institution>, <addr-line>Okayama</addr-line>, <country>Japan</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Innovation Center Okayama for Nanobio-targeted Therapy, Okayama University</institution>, <addr-line>Okayama</addr-line>, <country>Japan</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Niimi University</institution>, <addr-line>Niimi</addr-line>, <country>Japan</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Department of Immunotherapeutics, The University of Tokyo Hospital</institution>, <addr-line>Tokyo</addr-line>, <country>Japan</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Julie Decock, Qatar Biomedical Research Institute, Qatar</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Carlos A. Casiano, Loma Linda University, United States; Rodrigo Barderas, Instituto de Salud Carlos III (ISCIII), Spain</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Junichiro Futami, <email xlink:href="mailto:futamij@okayama-u.ac.jp">futamij@okayama-u.ac.jp</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Cancer Immunity and Immunotherapy, a section of the journal Frontiers in Oncology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>04</day>
<month>05</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>12</volume>
<elocation-id>869393</elocation-id>
<history>
<date date-type="received">
<day>04</day>
<month>02</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>07</day>
<month>04</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Miyamoto, Honjo, Masui, Kinoshita, Kumon, Kakimi and Futami</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Miyamoto, Honjo, Masui, Kinoshita, Kumon, Kakimi and Futami</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Serum autoantibody to cancer/testis antigens (CTAs) is a critical biomarker that reflects the antitumor immune response. Quantitative and multiplexed anti-CTA detection arrays can assess the immune status in tumors and monitor therapy-induced antitumor immune reactions. Most full-length recombinant CTA proteins tend to aggregate. Cysteine residue-specific <italic>S</italic>-cationization techniques facilitate the preparation of water-soluble and full-length CTAs. Combined with Luminex technology, we designed a multiple <italic>S</italic>-cationized antigen-immobilized bead array (MUSCAT) assay system to evaluate multiple serum antibodies to CTAs. Reducible <italic>S</italic>-alkyl-disulfide-cationized antigens in cytosolic conditions were employed to develop rabbit polyclonal antibodies as positive controls. These control antibodies sensitively detected immobilized antigens on beads and endogenous antigens in human lung cancer-derived cell lines. Rabbit polyclonal antibodies successfully confirmed the dynamic ranges and quantitative MUSCAT assay results. An immune monitoring study was conducted using the serum samples on an adenovirus&#x2212;mediated REIC/Dkk&#x2212;3 gene therapy clinical trial that showed a successful clinical response in metastatic castration-resistant prostate cancer. Autoantibody responses were closely related to clinical outcomes. Notably, upregulation of anti-CTA responses was monitored before tumor regression. Thus, quantitative monitoring of anti-CTA antibody biomarkers can be used to evaluate the cancer-immunity cycle. A quality-certified serum autoantibody monitoring system is a powerful tool for developing and evaluating cancer immunotherapy.</p>
</abstract>
<kwd-group>
<kwd>autoantibody</kwd>
<kwd>biomarker</kwd>
<kwd>protein engineering</kwd>
<kwd>cancer-immunity cycle</kwd>
<kwd>immune monitoring</kwd>
<kwd>cancer/testis antigens</kwd>
</kwd-group>
<counts>
<fig-count count="6"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="57"/>
<page-count count="11"/>
<word-count count="4371"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Growing evidence shows that many patients with cancer benefit from immunotherapy (<xref ref-type="bibr" rid="B1">1</xref>). The immune system can eliminate cancer cells by recognizing cancer antigens expressed in malignant cells. This cancer immunosurveillance concept is now clearly described by a seven-step cancer immunity cycle (<xref ref-type="bibr" rid="B2">2</xref>). Most cancers adopt strategies to evade the immune system after a long struggle between malignant cells and the immune system (<xref ref-type="bibr" rid="B3">3</xref>&#x2013;<xref ref-type="bibr" rid="B5">5</xref>). Thus, reactivation of the antitumor immune response and upregulation of the cancer-immunity cycle are critical to ensure improved clinical response. Immune checkpoint inhibitors are currently the most promising treatment for upregulating the cancer-immunity cycle; however, their clinical responses vary from patient to patient due to the complexity of tumor-immune interactions (<xref ref-type="bibr" rid="B6">6</xref>). Recent analysis of the mechanisms of immune suppression in cancer revealed that different steps in the cancer-immunity cycle by which tumors escape immunosurveillance are likely to differ among patients (<xref ref-type="bibr" rid="B7">7</xref>, <xref ref-type="bibr" rid="B8">8</xref>). Therefore, cancer immunotherapy needs to be personalized to identify the rate-limiting steps in individual patients, and a combination of strategies should be used to overcome these hurdles. To realize personalized precision cancer immune therapy, a technique that can monitor the cancer-immunity cycle will be a powerful tool for treatment.</p>
<p>The immunogenicity of cancer cells is determined by antigen peptides present on MHC class I, and CD8<sup>+</sup> cytotoxic lymphocytes eliminate cells by recognizing this complex (<xref ref-type="bibr" rid="B9">9</xref>). Cancer antigens can be classified into two groups: aberrantly expressed tumor-associated antigens (TAAs) (<xref ref-type="bibr" rid="B10">10</xref>) and cancer/testis antigens (CTAs) (<xref ref-type="bibr" rid="B11">11</xref>, <xref ref-type="bibr" rid="B12">12</xref>), or neoantigens derived from mutated gene products (<xref ref-type="bibr" rid="B13">13</xref>, <xref ref-type="bibr" rid="B14">14</xref>). Both TAAs and CTAs are known as shared antigens that are universally detectable in different patients. In contrast, somatic mutation-derived neoantigens show patient-specific individual variations (<xref ref-type="bibr" rid="B15">15</xref>).</p>
<p>During the cancer-immunity cycle activation, antigens released from cancer cells are then captured by dendritic cells, but not all the TAA- or CTA-derived peptides can present on MHC class I. However, these aberrantly expressed antigens could be involved in the humoral immune response. Hence, serum autoantibodies to cancer antigens reflect the current immune response level associated with tumor volume and antigenicity (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Once cancer cells are destroyed, many cancer antigens are released from them, captured by antigen-presenting cells, and induce T and B cell immune responses. The activation of the antitumor immune response is accompanied by an increase in the number of autoantibodies against various cancer antigens, referred to as antigen spreading (<xref ref-type="bibr" rid="B16">16</xref>&#x2013;<xref ref-type="bibr" rid="B22">22</xref>) which could be a critical pharmacodynamic biomarker for the clinical outcome of cancer immunotherapy (<xref ref-type="bibr" rid="B18">18</xref>, <xref ref-type="bibr" rid="B22">22</xref>&#x2013;<xref ref-type="bibr" rid="B26">26</xref>). Accumulating evidence indicates that antibody-antigen immune complex uptake through Fc&#x3b3; receptors on antigen-presenting cells induces cross-presentation, stimulating long-term antitumor cellular immunity (<xref ref-type="bibr" rid="B27">27</xref>). Thus, a simple blood test-based evaluation of antigen spreading with cancer-immunity cycle activation could predict systemic cancer immunity.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Anticancer immunity is enhanced by the cancer-immunity cycle, and cytotoxic T-lymphocytes (CTLs) eliminate cancer cells. Along with activating the cancer-immunity cycle, antibodies against cancer antigens upregulate by stimulation of released antigens from the cancer cells. Most intracellular cancer antigens suggest easy to denature and decompose after release from cancer cells due to their unstable physical properties. Antibody-producing cells that bind to denatured cancer antigens proliferate, so anti-cancer antigen IgGs recognizing the amino acid sequence of linear epitopes increase preferentially.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-12-869393-g001.tif"/>
</fig>
<p>The diagnosable set of cancer antigens requires a comprehensive array because the expression pattern, antigenicity, and epitopes vary in individual patients (<xref ref-type="bibr" rid="B23">23</xref>, <xref ref-type="bibr" rid="B28">28</xref>, <xref ref-type="bibr" rid="B29">29</xref>). Full-length cancer antigen preparation is favored for monitoring antigen spreading based on these requirements. However, many recombinant CTAs appear to show an aggregation-favored unstable property (<xref ref-type="bibr" rid="B30">30</xref>). This property is consistent with the bioinformatics prediction of the structure of CTAs, which shows that the majority of CTAs are intrinsically disordered proteins (IDPs) (<xref ref-type="bibr" rid="B31">31</xref>). These IDPs, or IDP regions, lack rigid tertiary structures under physiological conditions <italic>in vitro</italic>; however, they can fold after binding to target macromolecules <italic>in vivo (</italic>
<xref ref-type="bibr" rid="B32">32</xref>). Thus, recombinant CTA proteins in a disordered conformation frequently form inclusion bodies in host cells (<xref ref-type="bibr" rid="B33">33</xref>).</p>
<p>In order to quantitatively evaluate antigen spreading, we designed a multiple <italic>S-</italic>cationized antigen-immobilized bead array (MUSCAT) assay system (<xref ref-type="bibr" rid="B33">33</xref>). <italic>S-</italic>cationization techniques are employed as a powerful solubilization tool by conjugation of cationic moieties in sulfhydryl groups in denatured protein (<xref ref-type="bibr" rid="B34">34</xref>&#x2013;<xref ref-type="bibr" rid="B36">36</xref>). Full-length and water-soluble <italic>S-</italic>cationized antigens were covalently immobilized onto Luminex magnetic beads <italic>via</italic> the activated carboxylic acid of the COOH radical group (<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B37">37</xref>). Although immobilized <italic>S-</italic>cationized antigen on beads modified all Cys residues and limited amino-groups employed for immobilization, specific antibodies raised in cancer patients were quantitatively detected by the Luminex assay with high sensitivity. This MUSCAT assay system can detect polyclonal antibodies recognizing the linear epitope. Epitope-mapping study of anti-CTA autoantibodies in patient sera revealed that these antibodies are polyclonal and recognize individually different linear epitopes (<xref ref-type="bibr" rid="B28">28</xref>). Most CTAs are predicted to have no rigid ordered conformation (<xref ref-type="bibr" rid="B31">31</xref>), so antibodies recognizing conformational epitopes are most likely rare. Furthermore, recent knowledge-based and <italic>in silico</italic> analyses of linear epitopes showed that Cys is a minor frequent amino acid residue (<xref ref-type="bibr" rid="B38">38</xref>). Chemically modified Cys has minimal effect on the antibody binding efficiency. Thus, the MUSCAT assay system is a powerful strategy for quantifying antigen spreading to diagnose cancer immunotherapy.</p>
<p>Monitoring antigen spreading by the level of autoantibody biomarker requires validated positive control to ensure diagnostic accuracy. This study demonstrated that water-soluble reversibly <italic>S-</italic>cationized CTAs can be employed in both antigens recognized by serum antibodies on the MUSCAT assay and antigens to immunize rabbits to develop antibody-positive controls. Subsequently, this quality-certified serum autoantibody monitoring system also demonstrated successful immune monitoring using clinical samples. In a clinical trial, adenovirus&#x2212;mediated REIC/Dkk&#x2212;3 (Ad-REIC) gene therapy has shown a successful clinical response in metastatic castration-resistant prostate cancer (<xref ref-type="bibr" rid="B39">39</xref>&#x2013;<xref ref-type="bibr" rid="B41">41</xref>). Ad-REIC is known to induce cancer cell-specific apoptosis (<xref ref-type="bibr" rid="B42">42</xref>) and activate the antitumor immune response (<xref ref-type="bibr" rid="B43">43</xref>, <xref ref-type="bibr" rid="B44">44</xref>), so this serum sample was used to evaluate the MUSCAT assay system in the current study. It was confirmed that the elevated autoantibody biomarker closely related to the clinical response showed potential to assist clinical decisions by monitoring the level of the cancer-immunity cycle.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="s2_1">
<title>Preparation of Recombinant Antigens</title>
<p>The cDNAs for antigens encoding the full-length and mature form of NY-ESO-1/CT6.1 (Uniprot: P78358), MAGE-A4/CT1.4 (Uniprot: P43358), XAGE-1b/CT12.1 (Uniprot: Q9HD64), MAGE-C2/CT10 (Uniprot: Q9UBF1), DDX53/CT-26 (Uniprot: Q86TM3), WT-1 (Uniprot: J3KNN9), CEP55 (Uniprot: Q53EZ4), LY6K/CT97 (Uniprot: Q17RY6), PSG8 (Uniprot: Q9UQ74), and ZNF165/CT53 (Uniprot: P49910) were cloned into pET28b vectors (Novagen) to express a His-tag (MGSSHHHHHHSSGLVPRGSH) on the N-terminus, and StrepTagII (GPGWSHPQFEK) on the carboxyl terminus. An expression vector for enhanced green fluorescent protein (EGFP) was designed using the same procedure. All recombinant proteins were expressed in <italic>Escherichia coli</italic> BL21(DE3). MAGE-A4, MAGE-C2, and EGFP expressed as soluble fractions were purified by immobilized metal affinity chromatography (IMAC). The other eight recombinant proteins expressed as insoluble inclusion bodies were solubilized by reversible <italic>S-</italic>cationization using [3-(trimethylammonium)propyl]-methanethiosulphonate (TAPS-sulfonate, Katayama Chemical, Osaka, Japan), as described previously (<xref ref-type="bibr" rid="B33">33</xref>&#x2013;<xref ref-type="bibr" rid="B35">35</xref>). Antigens, containing degraded impurities, were further purified by a reversed-phase HPLC column (COSMOSIL Protein-R, 4.6 mm I.D. &#xd7; 150 mm, Nacalai Tesque Inc.) using an acetonitrile linear gradient elution procedure, in the presence of 0.1% HCl (<xref ref-type="supplementary-material" rid="SF1">
<bold>Supplementary Figure&#xa0;1</bold>
</xref>).</p>
</sec>
<sec id="s2_2">
<title>Immunization and Purification of Polyclonal Antibody</title>
<p>Antiserums against ten recombinant antigens were prepared by Cosmo Bio (Tokyo, Japan) by immunizing rabbits with native MAGE-A4 or nine TAPS-antigens. The IgG fraction was precipitated using 40% ammonium sulfate and dialyzed against PBS. The sample was then diluted three times with 60 mM acetate buffer (pH 4.8), and 6.8% caprylic acid was added to precipitate fibrinogen (<xref ref-type="bibr" rid="B45">45</xref>). After dialysis against PBS, anti-HisTag and anti-StrepTagII antibodies were captured using HisTag-EGFP-StrepTagII protein-immobilized NHS-sepharose (GE Healthcare). Specific antibodies against each antigen were purified using each antigen-immobilized column from the pass-through fractions described above.</p>
</sec>
<sec id="s2_3">
<title>Cell Culture</title>
<p>Human lung cancer-derived cell lines (NCI-H1299, NCI-H1975, and A549), a cervical cancer-derived cell line (HeLa S3), and an ovarian cancer-derived cell line (SK-OV-3) were obtained from the American Type Culture Collection (Manassas, VA, USA). The cells were maintained at 37&#xb0;C with 5% CO<sub>2</sub>. All cell lines were cultured in RPMI 1640 medium supplemented with 10% fetal bovine serum and penicillin/streptomycin (Wako, Osaka, Japan). DNA demethylation was demonstrated by the addition of 5 &#x3bc;M 5-aza-2&#x2019;-deoxycytidine (decitabine, DAC, LC Laboratories, Woburn, MA, USA) to the cell culture (<xref ref-type="bibr" rid="B46">46</xref>).</p>
</sec>
<sec id="s2_4">
<title>Western Blot Analysis</title>
<p>Cultured tissue cells were lysed in lysis buffer supplemented with a protease inhibitor cocktail and disrupted on ice using a sonicator. The protein concentration of cell lysates was assessed using the Bradford protein assay (Bio-Rad Laboratories, Hercules, CA, USA) with bovine serum albumin as a standard. Each cell lysate (20 &#xb5;g) was subjected to SDS-PAGE using a 5-20% gel (Wako, Osaka, Japan) and transferred to a PVDF membrane. After blocking with PVDF-blocking reagent (Toyobo, Osaka, Japan), 1 &#x3bc;g/mL of purified polyclonal antibody for each antigen in Can Get Signal 1 (Toyobo) were incubated with the membrane. Immunoreactive antigens were detected using anti-rabbit IgG HRP-linked antibody (Cell Signaling Technology, Tokyo, Japan) and Western Lightning Plus ECL (PerkinElmer, Waltham, MA, USA). The control monoclonal antibodies to MAGE-A4 (clone: E701U, Cell Signaling Technology, Tokyo, Japan) and XAGE-1b (clone: USO9-13) (<xref ref-type="bibr" rid="B47">47</xref>) were employed for the validation of the specificity of polyclonal antibodies. The membrane was reprobed with an anti-&#x3b2;-tubulin antibody (Wako).</p>
</sec>
<sec id="s2_5">
<title>Reverse Transcription (RT)-PCR</title>
<p>Total RNA was isolated from cultured tissue cells using the ISOSPIN Cell &amp; Tissue RNA kit (Nippon Gene, Tokyo, Japan). First-strand cDNA was synthesized from 500 ng of total RNA using PrimeScript&#x2122; IV 1st strand cDNA Synthesis Mix (Takara Bio, Shiga, Japan). Gene expression of antigens was evaluated by PCR using primer pairs for NY-ESO-1 (F: 5&#x2032;- ACATACTGACTATCCGACTGAC-3&#x2032;; R: 5&#x2032;- AGGCTGAGCCAAAAACAC-3&#x2032;), MAGE-A4 (F: 5&#x2032;-AAACCAGCTATGTGAAAGTCC-3&#x2032;; R: 5&#x2032;-ACTCCCTCTTCCTCCTCTAAC-3&#x2032;), and XAGE-1b (F: 5&#x2032;-GAGCCCCAAAAAGAAGAACC-3&#x2032;; R: 5&#x2032;-GCTCTTGCAGATCACCTTCC-3&#x2032;). Housekeeping gene expression was confirmed using the PCR primer pair for &#x3b2;-actin (F: 5&#x2032;-AGAGCTACGAGCTGCCTGAC-3&#x2032;; R: 5&#x2032;-AGCACTGTGTTGGCGTACAG-3&#x2032;).</p>
</sec>
<sec id="s2_6">
<title>Immunostaining of Endogenous CTAs</title>
<p>Sub-confluent cells on a glass-base dish (Iwaki Glass, Shizuoka, Japan) were fixed with 4% paraformaldehyde phosphate buffer solution (Wako) and permeabilized with 0.1% Triton X-100 in PBS for 30 min. Intracellular antigens were reacted with 5 &#x3bc;g/mL of purified polyclonal antibody for each antigen in PBS for 1 h at room temperature. Immunoreacted antigens and nuclei were stained with 2 &#x3bc;g/mL of goat anti-rabbit IgG, Alexa Fluor488 conjugated antibody (Life Technologies), and DAPI (Dojindo Laboratories, Kumamoto, Japan), respectively. Fluorescent images were acquired using a BC43 confocal microscope (Oxford Instruments, Abingdon, UK). Immunostaining of MAGE-C2 in tissue sections was performed using commercially available antibodies (HPA062230, Atlas Antibody, Stockholm, Sweden).</p>
</sec>
<sec id="s2_7">
<title>Validation of Luminex Beads and Beads Assay</title>
<p>Eight TAPS-antigens and two native antigens, certified for their purity, were immobilized to Bio-Plex Pro&#x2122; Magnetic COOH Beads (Bio-Rad) designed on a 10-plex assay panel (color-code:#27,35,37,43,45,46,53,55,62,64), according to the manufacturer&#x2019;s instructions. Beads assay for patient sera and titration assay by affinity-purified polyclonal antibodies designed as a positive control for the 10-plex assay were performed as described previously (<xref ref-type="bibr" rid="B33">33</xref>). Briefly, serially diluted antisera in Block Ace (DS Pharma Biomedical, Osaka, Japan) were incubated with 1000 beads for each antigen-immobilized bead in a 96-well microplate (Greiner Bio-One, Tokyo, Japan). After washing with Bio-Plex Pro wash station (Bio-Rad), antibodies on beads were detected by biotin-conjugated, either anti-human IgG or anti-rabbit IgG (Vector Laboratories) and labeled with streptavidin-PE (Vector Laboratories). Analysis was performed with Bio-Plex200 (Bio-Rad), and the mean fluorescence intensity (MFI) was determined from the values for 50 events (beads) per antigen at a minimum.</p>
</sec>
<sec id="s2_8">
<title>Immune Monitoring Study</title>
<p>A 63-year-old man with metastatic castration-resistant prostate cancer, who had shown promising results by Ad-REIC gene therapy, was chosen for the case study (<xref ref-type="bibr" rid="B39">39</xref>). Frozen serum samples from a clinical trial on metastatic castration-resistant prostate cancer treated with Ad-REIC (UMIN-CTR ID: UMIN000004929) (<xref ref-type="bibr" rid="B39">39</xref>, <xref ref-type="bibr" rid="B40">40</xref>) were used for antibody monitoring. The participants provided written informed consent under institutional review board permission at Okayama University Hospital. The prostate-specific antigen (PSA) level in serum was used from previous data. Control human serum from ten healthy donors (five male and five female, ages 19 to 64), and pooled serum from ten donors (five male and five female, ages 19 to 49) were obtained from Tennessee blood services (TN, USA).</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>Characterization of Rabbit Antibody Immunized by Reversibly <italic>S-</italic>Cationized Antigen</title>
<p>Specific antibodies recognizing human CTAs or TAAs are useful as positive controls to validate quantitative antibody detection arrays. Most recombinant CTAs/TAAs are expressed as insoluble inclusion bodies in the <italic>E. coli</italic> expression system; <italic>S-</italic>cationization techniques allow for the preparation of water-soluble antigens. Several antigens required purification by reversed-phase HPLC because degraded products were also solubilized during the preparation of <italic>S</italic>-cationized protein (<xref ref-type="supplementary-material" rid="SF1">
<bold>Supplementary Figure&#xa0;1</bold>
</xref>). All recombinant antigens used in this study were verified by SDS-PAGE (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). In this study, the native conformation of MAGE-A4 as well as reversibly <italic>S-</italic>cationized TAPS-NY-ESO-1 and TAPS-XAGE-1b were used to confirm the availability of the antigens for immunization of rabbits (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). These antisera showed high sensitivity to detect the endogenous level of intracellular antigens in western blotting and immunofluorescence staining (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4A, B</bold>
</xref>). Although both NY-ESO-1 and XAGE-1b were immunized as alkyldisulfide-modified forms, antibodies raised in rabbits specifically recognized linear epitopes in denatured antigen (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>), as well as epitopes in the native conformation (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>). The antigen specificity between purified polyclonal antibodies and monoclonal antibodies was almost comparable. Antibody response patterns for XAGE-1b are complicated because there are multiple variants (<xref ref-type="supplementary-material" rid="SF2">
<bold>Supplementary Figure&#xa0;2</bold>
</xref>). The nuclear localization of the granular-like pattern of XAGE-1b in NCI-H1975 cells was consistent with previous immunohistochemical results in lung cancer tissues and cells (<xref ref-type="bibr" rid="B17">17</xref>, <xref ref-type="bibr" rid="B48">48</xref>). This specific antibody is also detectable in the epigenetically regulated expression of CTAs. SK-OV-3 cells treated with DNA-methylation inhibitor of decitabine (DAC) showed induction of NY-ESO-1, MAGE-A4 and XAGE-1b as determined by measuring mRNA and protein expression levels (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4C, D</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>SDS-PAGE analysis of antigens employed for MUSCAT assay.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-12-869393-g002.tif"/>
</fig>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Schematic presentation of antigen engineering of CTAs/TAAs based on solubilization of denatured proteins by <italic>S</italic>-cationization techniques. Water-soluble and full-length TAPS-antigens were employed to capture specific antibodies for immune monitoring and immunization antigens to develop the control IgGs.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-12-869393-g003.tif"/>
</fig>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Specific binding of control IgGs developed by TAPS-antigen immunization was confirmed by the binding study of endogenous antigens. <bold>(A)</bold> Detection of intracellular antigens in cell lysates lane 1, NCI-H1299; lane 2, NCI-H1975; lane 3, A549; lane 4, HeLa S3 cells. Cell lysates were analyzed by western blotting with monoclonal antibodies or polyclonal antibodies (upper). mRNA expression levels of each antigen were evaluated by RT-PCR (lower). <bold>(B)</bold> Immunofluorescence staining of NCI-H1299, NCI-H1975, A549, and HeLa S3 cells for nucleus (blue) and intracellular antigens (green). <bold>(C)</bold> Detection of induced CTAs expression protein in SK-OV-3 cells treated with 5 &#x3bc;M DAC. Samples were collected after three or six days of cultivation with DAC. The upper panel is western blotting, the lower panel is RT-PCR. <bold>(D)</bold> Immunofluorescence staining of SK-OV-3 cells treated with 5 &#x3bc;M DAC for nucleus (blue) and intracellular NY-ESO-1 (green).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-12-869393-g004.tif"/>
</fig>
</sec>
<sec id="s3_2">
<title>Validation of MUSCAT Assay Panel</title>
<p>The specific binding of purified rabbit polyclonal anti-CTA antibodies was confirmed using both single-plex and 10-plex bead assays (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>). After purification of each specific antibody using an antigen-immobilized column, linearity and dynamic range of antibody detection in the MUSCAT assay were successfully confirmed in both single and 10-plex assays. The MFI values, calculated from more than 50 beads events in single and 10-plex assays, were highly correlated (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>). The detection ranges for NY-ESO-1(0.32-231 ng/mL), MAGE-A4 (0.12-489 ng/mL), and XAGE-1b (0.08-50 ng/mL) indicated the high sensitivity of these specific antibodies. Although every antigen was designed to possess HisTag and StrepTagII, no cross-reactivity was observed with the purified antibodies. Using this procedure, the preparation of all sets of specific antibodies will be an excellent tool for certifying the specificity and sensitivity of the MUSCAT assay inter-assay or preparation lot.</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>The validation study used purified rabbit polyclonal anti-CTAs antibodies in the single-plex and 10-plex beads assay. <bold>(A)</bold> The solid line represents the 10-plex assay, and the dotted line indicates the single-plex assay. <bold>(B)</bold> Correlation analysis between single-plex and 10-plex assay.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-12-869393-g005.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>Monitoring of Activation of Cancer-Immunity Cycle by Autoantibodies</title>
<p>To evaluate the potency of the MUSCAT assay system, changes in serum autoantibody levels were evaluated in one patient successfully treated with Ad-REIC cancer gene therapy (<xref ref-type="bibr" rid="B39">39</xref>). Intratumoral injection of Ad-REIC into metastatic lymph nodes induces ER stress-mediated apoptosis by overexpression of REIC, which is then extracellularly secreted where it upregulates immune reactions. Thus, tumor regression is thought to be related to activation of the cancer-immunity cycle. As shown in <xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6A</bold>
</xref>, drastic upregulation of anti-MAGE-C2 and anti-DDX53 was observed during the therapy. Other antibodies for WT-1, ZNF165, MAGE-A4, and PSG8 also increased along with the therapy, typically representing antigen spreading. One of the drastically induced anti-MAGE-C2 antibodies was confirmed to induce immune responses in tumor microenvironments because MAGE-C2 was detected in pretreatment biopsy (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>).</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Demonstration of immune monitoring by MUSCAT assay panel on a single, patient-derived clinical sample. <bold>(A)</bold> The line graph represents anti-MAGE-C2 antibodies and PSA changes. The heat map shows changes in the levels of 10 different serum autoantibodies. The dilution ratio of serum autoantibodies was adjusted to 80,000-fold dilution for high titer, 16,000-fold dilution for middle antibody titer, and 1,600-fold for low titer samples. Autoantibody levels in ten healthy donor individuals and a pooled sample. <bold>(B)</bold> Detection of MAGE-C2 protein in the tumor tissues. Scale bar represents 100 &#xb5;m.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-12-869393-g006.tif"/>
</fig>
<p>This clinical trial succeeded in complete regression of metastatic castration-resistant prostate cancer by repeating 17 intratumoral injections of Ad-REIC for more than two years (<xref ref-type="bibr" rid="B39">39</xref>). Notably, the earlier detection (approximately day 170) of increased autoantibody level before the PSA level decreasing is an important aspect of clinical use of the MUSCAT assay. In addition to the remission of cancer by Ad-REIC, autoantibodies were also reduced. The disappearance of antigen stimulation seems to be closely related to antibody levels. The detection of moderate activation of the cancer-immunity cycle by a small aliquot of a blood sample will be an excellent value for the decision of treatment course.</p>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>A recent oncological study revealed that cancer is heterogeneous (<xref ref-type="bibr" rid="B49">49</xref>). Heterogeneity in cancer is not only limited to different patients but also occurs within a single patient (<xref ref-type="bibr" rid="B50">50</xref>). Certain tumors can be analyzed by molecular profiling yielding clinically relevant diagnostic and prognostic results (<xref ref-type="bibr" rid="B49">49</xref>). However, intrapatient or intratumoral heterogeneity remains a significant challenge for deciding the course of clinical cancer treatment. As such, activating the cancer-immunity cycle is a reasonable strategy to overcome this heterogeneity issue (<xref ref-type="bibr" rid="B49">49</xref>). The death of the heterogeneous population of cancer cells can be a trigger for priming na&#xef;ve T cells by newly exposed antigens, resulting in the activation of the cancer-immunity cycle. Antigen exposure from cancer cells also enhances pre-existing memory T and B cells. Upon induction of these immune responses, T cell-mediated cellular immunity targeting various tumor antigens may help regress heterogeneous cancer. Humoral immune responses also increase during the cancer-immunity cycle activation (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>); therefore, anti-CTA/TAA IgGs are biomarkers that can reflect this anticancer immunity. The IgG autoantibody biomarker is superior in physicochemical aspects because IgGs in peripheral blood are relatively stable proteins (<xref ref-type="bibr" rid="B51">51</xref>). Furthermore, the bias in sampling or storage conditions are nearly negligible.</p>
<p>The preparation of a comprehensive array set of CTAs/TAAs is preferable for reliable evaluation of antigen spreading. Each antigen-specific antibody assay must be validated for its specificity and sensitivity for clinical use. In this study, the water-soluble full-length reversibly <italic>S-</italic>cationized TAPS-antigen was demonstrated to employ both antigens to capture specific antibodies in assay and antigens to develop the antibody in the immunized animals. Purified antibodies reliably validated control in the MUSCAT assay system. Most CTAs have unstable and aggregation-favored properties (<xref ref-type="bibr" rid="B30">30</xref>); therefore, <italic>S-</italic>cationization is a powerful technique to prepare highly purified and water-soluble antigens. We are currently preparing comprehensive sets of CTAs/TAAs and each specific antibody for use as a validation tool using these procedures.</p>
<p>The preparation of CTA-specific antibodies also allowed us to gain an understanding of the structural properties of the CTAs (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). TAPS-CTAs are fully denatured, so antibodies immunized by them recognize linear epitopes. However, these antibodies also recognize intracellular endogenous CTAs under non-denaturing conditions. This strongly suggests that the conformation of CTAs has no rigid conformation in cells. CTAs are originally found in testicular cells and are predicted to form a cooperative structure (<xref ref-type="bibr" rid="B31">31</xref>). However, aberrantly expressed CTAs in cancer lack this cooperative expression. Therefore, the CTAs released from apoptotic cancer cells are supposed to be easy to denature or decompose. Antibody-producing cells proliferate that bind to cancer antigens released from dead cancer cells; thus, most anti-CTAs bind to the denatured form of protein. A class switch from IgM to IgG also requires antigen binding and cytokine stimulation (<xref ref-type="bibr" rid="B52">52</xref>). This mechanism explains why anti-CTAs are recognized preferably in linear epitopes (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>).</p>
<p>Many CTAs, including MAGE-A4, NY-ESO-1, and XAGE-1b, are located on the X chromosome and are epigenetically regulated. Lack of X chromosome inactivation in cancer cells induces aberrant epigenetic changes and CTAs expression. Highly immunogenic cancer cells, expressing CTAs, tend to be targeted by the host immune system; thus, suppression of CTAs by DNA methylation could be a mechanism of immune escape in cancer (<xref ref-type="bibr" rid="B53">53</xref>, <xref ref-type="bibr" rid="B54">54</xref>). DNA methylation inhibitor treatment, to upregulate the immunogenicity of tumors, would therefore facilitate targeting by the host immune system (<xref ref-type="bibr" rid="B55">55</xref>). Ovarian cancer cell line SK-OV-3, has been reported as a model for reactivation of NY-ESO-1 by DAC (<xref ref-type="bibr" rid="B56">56</xref>). Increased levels of CTAs after DAC treatment were detected using anti-CTAs antibodies (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4C, D</bold>
</xref>). The polyclonal antibodies, immunized full-length CTAs, detected endogenous antigens and their transcript variants. Interestingly, XAGE-1b includes various uncharacterized immune reactive variants (<xref ref-type="supplementary-material" rid="SF2">
<bold>Supplementary Figure&#xa0;2</bold>
</xref>). Determination of these target antigens is crucial for enhancing the accuracy of the immune monitoring system.</p>
<p>As discussed above, both antigen exposure by inducing apoptosis in cancer cells and releasing immune-suppressing machinery is critical to upregulate the cancer-immunity cycle. Intratumoral injections of Ad-REIC therapy are potent in inducing both effects (<xref ref-type="bibr" rid="B39">39</xref>). In this therapy, Ad-REIC was injected into the metastatic lymph nodes. This strategy may contribute to the upregulation of the cancer immunity cycle because the released antigens from apoptotic cells exist in lymph nodes and stimulate T and B cells efficiently (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref> and <xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>). Although the validation of the MUSCAT assay has not yet been completed by positive control of antibodies, this panel showed successful immune monitoring by detecting upregulation of several antibodies in the high responders by Ad-REIC cancer gene therapy. It is crucial for the diagnostic use of the MUSCAT assay that antigen spreading be observed before tumor regression. Baseline analysis of these autoantibodies showed individual variations in ten healthy donors (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6A</bold>
</xref>) although it is unclear whether these variations reflect the immune history of the individuals. However, monitoring autoantibody changes during therapy will evaluate the generation of cancer-immunity cycle and autoimmune responses. The concept of immunologically &#x201c;hot&#x201d; or &#x201c;cold&#x201d; from the outcome of immune checkpoint inhibitor therapy is widely accepted today, and the drug discovery to achieve &#x201c;cold-to-hot&#x201d; tumor conversion is a great challenge (<xref ref-type="bibr" rid="B57">57</xref>). Thus, a tool to monitor this conversion is critical. A highly accurate and quantitative autoantibody monitoring system will be an excellent tool for developing a therapeutic strategy to overcome refractory cancer.</p>
</sec>
<sec id="s5" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s6" sec-type="ethics-statement">
<title>Ethics Statement</title>
<p>The studies involving human participants were reviewed and approved by Okayama University Hospital. The patients/participants provided their written informed consent to participate in this study.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author Contributions</title>
<p>AM, KK, and JF conceived the project. AM, TH, MM, and RK performed the experiments. AM and JF prepared the manuscript. HK analyzed the clinical data. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This work is partially supported by JST START Grant Number JPMJST1918 (JF) and supported by Science and Technology Promotion grants (2019&#x2013;2021) in Okayama Prefecture, Japan.</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>Okayama University and Medinet Co. Ltd. are holding patents on the method for MUSCAT assay.</p>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgments</title>
<p>The authors thank Professor Mikio Oka for providing the XAGE-1b specific monoclonal antibody (clone: USO9-13).</p>
</ack>
<sec sec-type="supplementary-material" id="s11">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fonc.2022.869393/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fonc.2022.869393/full#supplementary-material</ext-link>
</p>
    <supplementary-material xlink:href="DataSheet_1.docx" id="SF1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document">
<label>Supplementary Figure&#xa0;1</label>
<caption>
<p>Preparation of recombinant antigens.</p>
</caption>
</supplementary-material>
    <supplementary-material xlink:href="DataSheet_1.docx" id="SF2" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document">
<label>Supplementary Figure&#xa0;2</label>
<caption>
<p>XAGE-1 variants and immune reactivity of endogenous protein.</p>
</caption>
</supplementary-material>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<label>1</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lohmueller</surname> <given-names>J</given-names>
</name>
<name>
<surname>Finn</surname> <given-names>OJ</given-names>
</name>
</person-group>. <article-title>Current Modalities in Cancer Immunotherapy: Immunomodulatory Antibodies, Cars and Vaccines</article-title>. <source>Pharmacol Ther</source> (<year>2017</year>) <volume>178</volume>:<fpage>31</fpage>&#x2013;<lpage>47</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.pharmthera.2017.03.008</pub-id>
</citation>
</ref>
<ref id="B2">
<label>2</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chen</surname> <given-names>DS</given-names>
</name>
<name>
<surname>Mellman</surname> <given-names>I</given-names>
</name>
</person-group>. <article-title>Oncology Meets Immunology: The Cancer-Immunity Cycle</article-title>. <source>Immunity</source> (<year>2013</year>) <volume>39</volume>(<issue>1</issue>):<fpage>1</fpage>&#x2013;<lpage>10</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.immuni.2013.07.012</pub-id>
</citation>
</ref>
<ref id="B3">
<label>3</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gajewski</surname> <given-names>TF</given-names>
</name>
<name>
<surname>Schreiber</surname> <given-names>H</given-names>
</name>
<name>
<surname>Fu</surname> <given-names>YX</given-names>
</name>
</person-group>. <article-title>Innate and Adaptive Immune Cells in the Tumor Microenvironment</article-title>. <source>Nat Immunol</source> (<year>2013</year>) <volume>14</volume>(<issue>10</issue>):<page-range>1014&#x2013;22</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ni.2703</pub-id>
</citation>
</ref>
<ref id="B4">
<label>4</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Jeanbart</surname> <given-names>L</given-names>
</name>
<name>
<surname>Swartz</surname> <given-names>MA</given-names>
</name>
</person-group>. <article-title>Engineering Opportunities in Cancer Immunotherapy</article-title>. <source>Proc Natl Acad Sci USA</source> (<year>2015</year>) <volume>112</volume>(<issue>47</issue>):<page-range>14467&#x2013;72</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1073/pnas.1508516112</pub-id>
</citation>
</ref>
<ref id="B5">
<label>5</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Nishikawa</surname> <given-names>H</given-names>
</name>
<name>
<surname>Sakaguchi</surname> <given-names>S</given-names>
</name>
</person-group>. <article-title>Regulatory T Cells in Cancer Immunotherapy</article-title>. <source>Curr Opin Immunol</source> (<year>2014</year>) <volume>27</volume>:<fpage>1</fpage>&#x2013;<lpage>7</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.coi.2013.12.005</pub-id>
</citation>
</ref>
<ref id="B6">
<label>6</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Salemme</surname> <given-names>V</given-names>
</name>
<name>
<surname>Centonze</surname> <given-names>G</given-names>
</name>
<name>
<surname>Cavallo</surname> <given-names>F</given-names>
</name>
<name>
<surname>Defilippi</surname> <given-names>P</given-names>
</name>
<name>
<surname>Conti</surname> <given-names>L</given-names>
</name>
</person-group>. <article-title>The Crosstalk Between Tumor Cells and the Immune Microenvironment in Breast Cancer: Implications for Immunotherapy</article-title>. <source>Front Oncol</source> (<year>2021</year>) <volume>11</volume>:<elocation-id>610303</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fonc.2021.610303</pub-id>
</citation>
</ref>
<ref id="B7">
<label>7</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Karasaki</surname> <given-names>T</given-names>
</name>
<name>
<surname>Nagayama</surname> <given-names>K</given-names>
</name>
<name>
<surname>Kuwano</surname> <given-names>H</given-names>
</name>
<name>
<surname>Nitadori</surname> <given-names>JI</given-names>
</name>
<name>
<surname>Sato</surname> <given-names>M</given-names>
</name>
<name>
<surname>Anraku</surname> <given-names>M</given-names>
</name>
<etal/>
</person-group>. <article-title>An Immunogram for the Cancer-Immunity Cycle: Towards Personalized Immunotherapy of Lung Cancer</article-title>. <source>J Thorac Oncol</source> (<year>2017</year>) <volume>12</volume>(<issue>5</issue>):<fpage>791</fpage>&#x2013;<lpage>803</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jtho.2017.01.005</pub-id>
</citation>
</ref>
<ref id="B8">
<label>8</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kobayashi</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Kushihara</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Saito</surname> <given-names>N</given-names>
</name>
<name>
<surname>Yamaguchi</surname> <given-names>S</given-names>
</name>
<name>
<surname>Kakimi</surname> <given-names>K</given-names>
</name>
</person-group>. <article-title>A Novel Scoring Method Based on Rna-Seq Immunograms Describing Individual Cancer-Immunity Interactions</article-title>. <source>Cancer Sci</source> (<year>2020</year>) <volume>111</volume>(<issue>11</issue>):<page-range>4031&#x2013;40</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/cas.14621</pub-id>
</citation>
</ref>
<ref id="B9">
<label>9</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Aptsiauri</surname> <given-names>N</given-names>
</name>
<name>
<surname>Cabrera</surname> <given-names>T</given-names>
</name>
<name>
<surname>Garcia-Lora</surname> <given-names>A</given-names>
</name>
<name>
<surname>Lopez-Nevot</surname> <given-names>MA</given-names>
</name>
<name>
<surname>Ruiz-Cabello</surname> <given-names>F</given-names>
</name>
<name>
<surname>Garrido</surname> <given-names>F</given-names>
</name>
</person-group>. <article-title>Mhc Class I Antigens and Immune Surveillance in Transformed Cells</article-title>. <source>Int Rev Cytol</source> (<year>2007</year>) <volume>256</volume>:<page-range>139&#x2013;89</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/S0074-7696(07)56005-5</pub-id>
</citation>
</ref>
<ref id="B10">
<label>10</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cheever</surname> <given-names>MA</given-names>
</name>
<name>
<surname>Allison</surname> <given-names>JP</given-names>
</name>
<name>
<surname>Ferris</surname> <given-names>AS</given-names>
</name>
<name>
<surname>Finn</surname> <given-names>OJ</given-names>
</name>
<name>
<surname>Hastings</surname> <given-names>BM</given-names>
</name>
<name>
<surname>Hecht</surname> <given-names>TT</given-names>
</name>
<etal/>
</person-group>. <article-title>The Prioritization of Cancer Antigens: A National Cancer Institute Pilot Project for the Acceleration of Translational Research</article-title>. <source>Clin Cancer Res</source> (<year>2009</year>) <volume>15</volume>(<issue>17</issue>):<page-range>5323&#x2013;37</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1158/1078-0432.CCR-09-0737</pub-id>
</citation>
</ref>
<ref id="B11">
<label>11</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Scanlan</surname> <given-names>MJ</given-names>
</name>
<name>
<surname>Gure</surname> <given-names>AO</given-names>
</name>
<name>
<surname>Jungbluth</surname> <given-names>AA</given-names>
</name>
<name>
<surname>Old</surname> <given-names>LJ</given-names>
</name>
<name>
<surname>Chen</surname> <given-names>YT</given-names>
</name>
</person-group>. <article-title>Cancer/Testis Antigens: An Expanding Family of Targets for Cancer Immunotherapy</article-title>. <source>Immunol Rev</source> (<year>2002</year>) <volume>188</volume>:<fpage>22</fpage>&#x2013;<lpage>32</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1034/j.1600-065x.2002.18803.x</pub-id>
</citation>
</ref>
<ref id="B12">
<label>12</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Scanlan</surname> <given-names>MJ</given-names>
</name>
<name>
<surname>Simpson</surname> <given-names>AJ</given-names>
</name>
<name>
<surname>Old</surname> <given-names>LJ</given-names>
</name>
</person-group>. <article-title>The Cancer/Testis Genes: Review, Standardization, and Commentary</article-title>. <source>Cancer Immun</source> (<year>2004</year>) <volume>4</volume>:<fpage>1</fpage>.</citation>
</ref>
<ref id="B13">
<label>13</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tran</surname> <given-names>E</given-names>
</name>
<name>
<surname>Turcotte</surname> <given-names>S</given-names>
</name>
<name>
<surname>Gros</surname> <given-names>A</given-names>
</name>
<name>
<surname>Robbins</surname> <given-names>PF</given-names>
</name>
<name>
<surname>Lu</surname> <given-names>YC</given-names>
</name>
<name>
<surname>Dudley</surname> <given-names>ME</given-names>
</name>
<etal/>
</person-group>. <article-title>Cancer Immunotherapy Based on Mutation-Specific Cd4+ T Cells in a Patient With Epithelial Cancer</article-title>. <source>Science</source> (<year>2014</year>) <volume>344</volume>(<issue>6184</issue>):<page-range>641&#x2013;5</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1126/science.1251102</pub-id>
</citation>
</ref>
<ref id="B14">
<label>14</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yadav</surname> <given-names>M</given-names>
</name>
<name>
<surname>Jhunjhunwala</surname> <given-names>S</given-names>
</name>
<name>
<surname>Phung</surname> <given-names>QT</given-names>
</name>
<name>
<surname>Lupardus</surname> <given-names>P</given-names>
</name>
<name>
<surname>Tanguay</surname> <given-names>J</given-names>
</name>
<name>
<surname>Bumbaca</surname> <given-names>S</given-names>
</name>
<etal/>
</person-group>. <article-title>Predicting Immunogenic Tumour Mutations by Combining Mass Spectrometry and Exome Sequencing</article-title>. <source>Nature</source> (<year>2014</year>) <volume>515</volume>(<issue>7528</issue>):<page-range>572&#x2013;6</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/nature14001</pub-id>
</citation>
</ref>
<ref id="B15">
<label>15</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Alexandrov</surname> <given-names>LB</given-names>
</name>
<name>
<surname>Nik-Zainal</surname> <given-names>S</given-names>
</name>
<name>
<surname>Wedge</surname> <given-names>DC</given-names>
</name>
<name>
<surname>Aparicio</surname> <given-names>SA</given-names>
</name>
<name>
<surname>Behjati</surname> <given-names>S</given-names>
</name>
<name>
<surname>Biankin</surname> <given-names>AV</given-names>
</name>
<etal/>
</person-group>. <article-title>Signatures of Mutational Processes in Human Cancer</article-title>. <source>Nature</source> (<year>2013</year>) <volume>500</volume>(<issue>7463</issue>):<page-range>415&#x2013;21</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/nature12477</pub-id>
</citation>
</ref>
<ref id="B16">
<label>16</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ohue</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Wada</surname> <given-names>H</given-names>
</name>
<name>
<surname>Oka</surname> <given-names>M</given-names>
</name>
<name>
<surname>Nakayama</surname> <given-names>E</given-names>
</name>
</person-group>. <article-title>Antibody Response to Cancer/Testis (Ct) Antigens: A Prognostic Marker in Cancer Patients</article-title>. <source>Oncoimmunology</source> (<year>2014</year>) <volume>3</volume>(<issue>11</issue>):<elocation-id>e970032</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.4161/21624011.2014.970032</pub-id>
</citation>
</ref>
<ref id="B17">
<label>17</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ohue</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Kurose</surname> <given-names>K</given-names>
</name>
<name>
<surname>Mizote</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Matsumoto</surname> <given-names>H</given-names>
</name>
<name>
<surname>Nishio</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Isobe</surname> <given-names>M</given-names>
</name>
<etal/>
</person-group>. <article-title>Prolongation of Overall Survival in Advanced Lung Adenocarcinoma Patients With the Xage1 (Gaged2a) Antibody</article-title>. <source>Clin Cancer Res</source> (<year>2014</year>) <volume>20</volume>(<issue>19</issue>):<page-range>5052&#x2013;63</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1158/1078-0432.CCR-14-0742</pub-id>
</citation>
</ref>
<ref id="B18">
<label>18</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ohue</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Kurose</surname> <given-names>K</given-names>
</name>
<name>
<surname>Karasaki</surname> <given-names>T</given-names>
</name>
<name>
<surname>Isobe</surname> <given-names>M</given-names>
</name>
<name>
<surname>Yamaoka</surname> <given-names>T</given-names>
</name>
<name>
<surname>Futami</surname> <given-names>J</given-names>
</name>
<etal/>
</person-group>. <article-title>Serum Antibody Against Ny-Eso-1 and Xage1 Antigens Potentially Predicts Clinical Responses to Anti-Pd-1 Therapy in Non-Small-Cell Lung Cancer</article-title>. <source>J Thorac Oncol</source> (<year>2019</year>) <volume>14</volume>(<issue>12</issue>):<page-range>2071&#x2013;83</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jtho.2019.08.008</pub-id>
</citation>
</ref>
<ref id="B19">
<label>19</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gnjatic</surname> <given-names>S</given-names>
</name>
<name>
<surname>Ritter</surname> <given-names>E</given-names>
</name>
<name>
<surname>B&#xfc;chler</surname> <given-names>MW</given-names>
</name>
<name>
<surname>Giese</surname> <given-names>NA</given-names>
</name>
<name>
<surname>Brors</surname> <given-names>B</given-names>
</name>
<name>
<surname>Frei</surname> <given-names>C</given-names>
</name>
<etal/>
</person-group>. <article-title>Seromic Profiling of Ovarian and Pancreatic Cancer</article-title>. <source>Proc Natl Acad Sci USA</source> (<year>2010</year>) <volume>107</volume>(<issue>11</issue>):<page-range>5088&#x2013;93</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1073/pnas.0914213107</pub-id>
</citation>
</ref>
<ref id="B20">
<label>20</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gottschalk</surname> <given-names>S</given-names>
</name>
<name>
<surname>Yu</surname> <given-names>F</given-names>
</name>
<name>
<surname>Ji</surname> <given-names>M</given-names>
</name>
<name>
<surname>Kakarla</surname> <given-names>S</given-names>
</name>
<name>
<surname>Song</surname> <given-names>XT</given-names>
</name>
</person-group>. <article-title>A Vaccine That Co-Targets Tumor Cells and Cancer Associated Fibroblasts Results in Enhanced Antitumor Activity by Inducing Antigen Spreading</article-title>. <source>PLoS One</source> (<year>2013</year>) <volume>8</volume>(<issue>12</issue>):<elocation-id>e82658</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1371/journal.pone.0082658</pub-id>
</citation>
</ref>
<ref id="B21">
<label>21</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Nesslinger</surname> <given-names>NJ</given-names>
</name>
<name>
<surname>Ng</surname> <given-names>A</given-names>
</name>
<name>
<surname>Tsang</surname> <given-names>KY</given-names>
</name>
<name>
<surname>Ferrara</surname> <given-names>T</given-names>
</name>
<name>
<surname>Schlom</surname> <given-names>J</given-names>
</name>
<name>
<surname>Gulley</surname> <given-names>JL</given-names>
</name>
<etal/>
</person-group>. <article-title>A Viral Vaccine Encoding Prostate-Specific Antigen Induces Antigen Spreading to a Common Set of Self-Proteins in Prostate Cancer Patients</article-title>. <source>Clin Cancer Res</source> (<year>2010</year>) <volume>16</volume>(<issue>15</issue>):<page-range>4046&#x2013;56</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1158/1078-0432.CCR-10-0948</pub-id>
</citation>
</ref>
<ref id="B22">
<label>22</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Brossart</surname> <given-names>P</given-names>
</name>
</person-group>. <article-title>The Role of Antigen Spreading in the Efficacy of Immunotherapies</article-title>. <source>Clin Cancer Res</source> (<year>2020</year>) <volume>26</volume>(<issue>17</issue>):<page-range>4442&#x2013;7</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1158/1078-0432.CCR-20-0305</pub-id>
</citation>
</ref>
<ref id="B23">
<label>23</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gupta</surname> <given-names>A</given-names>
</name>
<name>
<surname>Nuber</surname> <given-names>N</given-names>
</name>
<name>
<surname>Esslinger</surname> <given-names>C</given-names>
</name>
<name>
<surname>Wittenbrink</surname> <given-names>M</given-names>
</name>
<name>
<surname>Treder</surname> <given-names>M</given-names>
</name>
<name>
<surname>Landshammer</surname> <given-names>A</given-names>
</name>
<etal/>
</person-group>. <article-title>A Novel Human-Derived Antibody Against Ny-Eso-1 Improves the Efficacy of Chemotherapy</article-title>. <source>Cancer Immun</source> (<year>2013</year>) <volume>13</volume>:<fpage>3</fpage>.</citation>
</ref>
<ref id="B24">
<label>24</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>de Moel</surname> <given-names>EC</given-names>
</name>
<name>
<surname>Rozeman</surname> <given-names>EA</given-names>
</name>
<name>
<surname>Kapiteijn</surname> <given-names>EH</given-names>
</name>
<name>
<surname>Verdegaal</surname> <given-names>EME</given-names>
</name>
<name>
<surname>Grummels</surname> <given-names>A</given-names>
</name>
<name>
<surname>Bakker</surname> <given-names>JA</given-names>
</name>
<etal/>
</person-group>. <article-title>Autoantibody Development Under Treatment With Immune-Checkpoint Inhibitors</article-title>. <source>Cancer Immunol Res</source> (<year>2019</year>) <volume>7</volume>(<issue>1</issue>):<fpage>6</fpage>&#x2013;<lpage>11</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1158/2326-6066.CIR-18-0245</pub-id>
</citation>
</ref>
<ref id="B25">
<label>25</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sakai</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Kurose</surname> <given-names>K</given-names>
</name>
<name>
<surname>Sakaeda</surname> <given-names>K</given-names>
</name>
<name>
<surname>Abo</surname> <given-names>H</given-names>
</name>
<name>
<surname>Atarashi</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Ide</surname> <given-names>N</given-names>
</name>
<etal/>
</person-group>. <article-title>A Novel Automated Immunoassay for Serum Ny-Eso-1 and Xage1 Antibodies in Combinatory Prediction of Response to Anti-Programmed Cell Death-1 Therapy in Non-Small-Cell Lung Cancer</article-title>. <source>Clin Chim Acta</source> (<year>2021</year>) <volume>519</volume>:<page-range>51&#x2013;9</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.cca.2021.04.008</pub-id>
</citation>
</ref>
<ref id="B26">
<label>26</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ohue</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Kurose</surname> <given-names>K</given-names>
</name>
<name>
<surname>Karasaki</surname> <given-names>T</given-names>
</name>
<name>
<surname>Isobe</surname> <given-names>M</given-names>
</name>
<name>
<surname>Yamaoka</surname> <given-names>T</given-names>
</name>
<name>
<surname>Futami</surname> <given-names>J</given-names>
</name>
<etal/>
</person-group>. <article-title>Serum Antibody Against Ny-Eso-1 and Xage1 Antigens Potentially Predicts Clinical Responses to Anti-Programmed Cell Death-1 Therapy in Nsclc</article-title>. <source>J Thorac Oncol</source> (<year>2019</year>) <volume>14</volume>(<issue>12</issue>):<page-range>2071&#x2013;83</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jtho.2019.08.008</pub-id>
</citation>
</ref>
<ref id="B27">
<label>27</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>DiLillo</surname> <given-names>DJ</given-names>
</name>
<name>
<surname>Ravetch</surname> <given-names>JV</given-names>
</name>
</person-group>. <article-title>Differential Fc-Receptor Engagement Drives an Anti-Tumor Vaccinal Effect</article-title>. <source>Cell</source> (<year>2015</year>) <volume>161</volume>(<issue>5</issue>):<page-range>1035&#x2013;45</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.cell.2015.04.016</pub-id>
</citation>
</ref>
<ref id="B28">
<label>28</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kawabata</surname> <given-names>R</given-names>
</name>
<name>
<surname>Wada</surname> <given-names>H</given-names>
</name>
<name>
<surname>Isobe</surname> <given-names>M</given-names>
</name>
<name>
<surname>Saika</surname> <given-names>T</given-names>
</name>
<name>
<surname>Sato</surname> <given-names>S</given-names>
</name>
<name>
<surname>Uenaka</surname> <given-names>A</given-names>
</name>
<etal/>
</person-group>. <article-title>Antibody Response Against Ny-Eso-1 in Chp-Ny-Eso-1 Vaccinated Patients</article-title>. <source>Int J Cancer</source> (<year>2007</year>) <volume>120</volume>(<issue>10</issue>):<page-range>2178&#x2013;84</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1002/ijc.22583</pub-id>
</citation>
</ref>
<ref id="B29">
<label>29</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ohue</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Eikawa</surname> <given-names>S</given-names>
</name>
<name>
<surname>Okazaki</surname> <given-names>N</given-names>
</name>
<name>
<surname>Mizote</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Isobe</surname> <given-names>M</given-names>
</name>
<name>
<surname>Uenaka</surname> <given-names>A</given-names>
</name>
<etal/>
</person-group>. <article-title>Spontaneous Antibody, and Cd4 and Cd8 T-Cell Responses Against Xage-1b (Gaged2a) in Non-Small Cell Lung Cancer Patients</article-title>. <source>Int J Cancer</source> (<year>2012</year>) <volume>131</volume>(<issue>5</issue>):<page-range>E649&#x2013;58</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1002/ijc.27359</pub-id>
</citation>
</ref>
<ref id="B30">
<label>30</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ahmadi</surname> <given-names>H</given-names>
</name>
<name>
<surname>Shogen</surname> <given-names>K</given-names>
</name>
<name>
<surname>Fujita</surname> <given-names>K</given-names>
</name>
<name>
<surname>Honjo</surname> <given-names>T</given-names>
</name>
<name>
<surname>Kakimi</surname> <given-names>K</given-names>
</name>
<name>
<surname>Futami</surname> <given-names>J</given-names>
</name>
</person-group>. <article-title>Unusual Aggregation Property of Recombinantly Expressed Cancer-Testis Antigens in Mammalian Cells</article-title>. <source>J Biochem</source> (<year>2021</year>) <volume>170</volume>(<issue>3</issue>):<page-range>435&#x2013;43</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/jb/mvab081</pub-id>
</citation>
</ref>
<ref id="B31">
<label>31</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rajagopalan</surname> <given-names>K</given-names>
</name>
<name>
<surname>Mooney</surname> <given-names>SM</given-names>
</name>
<name>
<surname>Parekh</surname> <given-names>N</given-names>
</name>
<name>
<surname>Getzenberg</surname> <given-names>RH</given-names>
</name>
<name>
<surname>Kulkarni</surname> <given-names>P</given-names>
</name>
</person-group>. <article-title>A Majority of the Cancer/Testis Antigens Are Intrinsically Disordered Proteins</article-title>. <source>J Cell Biochem</source> (<year>2011</year>) <volume>112</volume>(<issue>11</issue>):<page-range>3256&#x2013;67</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1002/jcb.23252</pub-id>
</citation>
</ref>
<ref id="B32">
<label>32</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tompa</surname> <given-names>P</given-names>
</name>
<name>
<surname>Csermely</surname> <given-names>P</given-names>
</name>
</person-group>. <article-title>The Role of Structural Disorder in the Function of Rna and Protein Chaperones</article-title>. <source>FASEB J</source> (<year>2004</year>) <volume>18</volume>(<issue>11</issue>):<page-range>1169&#x2013;75</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1096/fj.04-1584rev</pub-id>
</citation>
</ref>
<ref id="B33">
<label>33</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Futami</surname> <given-names>J</given-names>
</name>
<name>
<surname>Nonomura</surname> <given-names>H</given-names>
</name>
<name>
<surname>Kido</surname> <given-names>M</given-names>
</name>
<name>
<surname>Niidoi</surname> <given-names>N</given-names>
</name>
<name>
<surname>Fujieda</surname> <given-names>N</given-names>
</name>
<name>
<surname>Hosoi</surname> <given-names>A</given-names>
</name>
<etal/>
</person-group>. <article-title>Sensitive Multiplexed Quantitative Analysis of Autoantibodies to Cancer Antigens With Chemically S-Cationized Full-Length and Water-Soluble Denatured Proteins</article-title>. <source>Bioconjug Chem</source> (<year>2015</year>) <volume>26</volume>(<issue>10</issue>):<page-range>2076&#x2013;84</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1021/acs.bioconjchem.5b00328</pub-id>
</citation>
</ref>
<ref id="B34">
<label>34</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kimura</surname> <given-names>S</given-names>
</name>
<name>
<surname>Imamura</surname> <given-names>K</given-names>
</name>
<name>
<surname>Futami</surname> <given-names>J</given-names>
</name>
</person-group>. <article-title>A Suitable and Effective Stepwise Oxidative Refolding Procedure for Highly-Cationic Tetrameric Avidin in Nucleic Acid Free Conditions</article-title>. <source>Biotechnol Prog</source> (<year>2020</year>) <volume>36</volume>(<issue>5</issue>):<elocation-id>e3031</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1002/btpr.3031</pub-id>
</citation>
</ref>
<ref id="B35">
<label>35</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Futami</surname> <given-names>M</given-names>
</name>
<name>
<surname>Nakano</surname> <given-names>T</given-names>
</name>
<name>
<surname>Yasunaga</surname> <given-names>M</given-names>
</name>
<name>
<surname>Makihara</surname> <given-names>M</given-names>
</name>
<name>
<surname>Asama</surname> <given-names>T</given-names>
</name>
<name>
<surname>Hagihara</surname> <given-names>Y</given-names>
</name>
<etal/>
</person-group>. <article-title>Enhanced in-Cell Folding of Reversibly Cationized Transcription Factor Using Amphipathic Peptide</article-title>. <source>J Biosci Bioeng</source> (<year>2017</year>) <volume>123</volume>(<issue>4</issue>):<page-range>419&#x2013;24</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jbiosc.2016.11.011</pub-id>
</citation>
</ref>
<ref id="B36">
<label>36</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Futami</surname> <given-names>J</given-names>
</name>
<name>
<surname>Miyamoto</surname> <given-names>A</given-names>
</name>
<name>
<surname>Hagimoto</surname> <given-names>A</given-names>
</name>
<name>
<surname>Suzuki</surname> <given-names>S</given-names>
</name>
<name>
<surname>Futami</surname> <given-names>M</given-names>
</name>
<name>
<surname>Tada</surname> <given-names>H</given-names>
</name>
</person-group>. <article-title>Evaluation of Irreversible Protein Thermal Inactivation Caused by Breakage of Disulphide Bonds Using Methanethiosulphonate</article-title>. <source>Sci Rep</source> (<year>2017</year>) <volume>7</volume>(<issue>1</issue>):<fpage>12471</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/s41598-017-12748-y</pub-id>
</citation>
</ref>
<ref id="B37">
<label>37</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bjerre</surname> <given-names>M</given-names>
</name>
<name>
<surname>Hansen</surname> <given-names>TK</given-names>
</name>
<name>
<surname>Flyvbjerg</surname> <given-names>A</given-names>
</name>
<name>
<surname>T&#xf8;nnesen</surname> <given-names>E</given-names>
</name>
</person-group>. <article-title>Simultaneous Detection of Porcine Cytokines by Multiplex Analysis: Development of Magnetic Bioplex Assay</article-title>. <source>Vet Immunol Immunopathol</source> (<year>2009</year>) <volume>130</volume>(<issue>1-2</issue>):<page-range>53&#x2013;8</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.vetimm.2009.01.007</pub-id>
</citation>
</ref>
<ref id="B38">
<label>38</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ramaraj</surname> <given-names>T</given-names>
</name>
<name>
<surname>Angel</surname> <given-names>T</given-names>
</name>
<name>
<surname>Dratz</surname> <given-names>EA</given-names>
</name>
<name>
<surname>Jesaitis</surname> <given-names>AJ</given-names>
</name>
<name>
<surname>Mumey</surname> <given-names>B</given-names>
</name>
</person-group>. <article-title>Antigen-Antibody Interface Properties: Composition, Residue Interactions, and Features of 53 Non-Redundant Structures</article-title>. <source>Biochim Biophys Acta</source> (<year>2012</year>) <volume>1824</volume>(<issue>3</issue>):<page-range>520&#x2013;32</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.bbapap.2011.12.007</pub-id>
</citation>
</ref>
<ref id="B39">
<label>39</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kumon</surname> <given-names>H</given-names>
</name>
<name>
<surname>Sasaki</surname> <given-names>K</given-names>
</name>
<name>
<surname>Ariyoshi</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Sadahira</surname> <given-names>T</given-names>
</name>
<name>
<surname>Ebara</surname> <given-names>S</given-names>
</name>
<name>
<surname>Hiraki</surname> <given-names>T</given-names>
</name>
<etal/>
</person-group>. <article-title>Ad-Reic Gene Therapy: Promising Results in a Patient With Metastatic Crpc Following Chemotherapy</article-title>. <source>Clin Med Insights Oncol</source> (<year>2015</year>) <volume>9</volume>:<page-range>31&#x2013;8</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.4137/CMO.S23252</pub-id>
</citation>
</ref>
<ref id="B40">
<label>40</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kumon</surname> <given-names>H</given-names>
</name>
<name>
<surname>Ariyoshi</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Sasaki</surname> <given-names>K</given-names>
</name>
<name>
<surname>Sadahira</surname> <given-names>T</given-names>
</name>
<name>
<surname>Araki</surname> <given-names>M</given-names>
</name>
<name>
<surname>Ebara</surname> <given-names>S</given-names>
</name>
<etal/>
</person-group>. <article-title>Adenovirus Vector Carrying Reic/Dkk-3 Gene: Neoadjuvant Intraprostatic Injection for High-Risk Localized Prostate Cancer Undergoing Radical Prostatectomy</article-title>. <source>Cancer Gene Ther</source> (<year>2016</year>) <volume>23</volume>(<issue>11</issue>):<page-range>400&#x2013;9</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/cgt.2016.53</pub-id>
</citation>
</ref>
<ref id="B41">
<label>41</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Abarzua</surname> <given-names>F</given-names>
</name>
<name>
<surname>Sakaguchi</surname> <given-names>M</given-names>
</name>
<name>
<surname>Takaishi</surname> <given-names>M</given-names>
</name>
<name>
<surname>Nasu</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Kurose</surname> <given-names>K</given-names>
</name>
<name>
<surname>Ebara</surname> <given-names>S</given-names>
</name>
<etal/>
</person-group>. <article-title>Adenovirus-Mediated Overexpression of Reic/Dkk-3 Selectively Induces Apoptosis in Human Prostate Cancer Cells Through Activation of C-Jun-Nh2-Kinase</article-title>. <source>Cancer Res</source> (<year>2005</year>) <volume>65</volume>(<issue>21</issue>):<page-range>9617&#x2013;22</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1158/0008-5472.CAN-05-0829</pub-id>
</citation>
</ref>
<ref id="B42">
<label>42</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sakaguchi</surname> <given-names>M</given-names>
</name>
<name>
<surname>Kataoka</surname> <given-names>K</given-names>
</name>
<name>
<surname>Abarzua</surname> <given-names>F</given-names>
</name>
<name>
<surname>Tanimoto</surname> <given-names>R</given-names>
</name>
<name>
<surname>Watanabe</surname> <given-names>M</given-names>
</name>
<name>
<surname>Murata</surname> <given-names>H</given-names>
</name>
<etal/>
</person-group>. <article-title>Overexpression of Reic/Dkk-3 in Normal Fibroblasts Suppresses Tumor Growth <italic>Via</italic> Induction of Interleukin-7</article-title>. <source>J Biol Chem</source> (<year>2009</year>) <volume>284</volume>(<issue>21</issue>):<page-range>14236&#x2013;44</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1074/jbc.M808002200</pub-id>
</citation>
</ref>
<ref id="B43">
<label>43</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Watanabe</surname> <given-names>M</given-names>
</name>
<name>
<surname>Kashiwakura</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Huang</surname> <given-names>P</given-names>
</name>
<name>
<surname>Ochiai</surname> <given-names>K</given-names>
</name>
<name>
<surname>Futami</surname> <given-names>J</given-names>
</name>
<name>
<surname>Li</surname> <given-names>SA</given-names>
</name>
<etal/>
</person-group>. <article-title>Immunological Aspects of Reic/Dkk-3 in Monocyte Differentiation and Tumor Regression</article-title>. <source>Int J Oncol</source> (<year>2009</year>) <volume>34</volume>(<issue>3</issue>):<page-range>657&#x2013;63</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.3892/ijo_00000191</pub-id>
</citation>
</ref>
<ref id="B44">
<label>44</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kinoshita</surname> <given-names>R</given-names>
</name>
<name>
<surname>Watanabe</surname> <given-names>M</given-names>
</name>
<name>
<surname>Huang</surname> <given-names>P</given-names>
</name>
<name>
<surname>Li</surname> <given-names>SA</given-names>
</name>
<name>
<surname>Sakaguchi</surname> <given-names>M</given-names>
</name>
<name>
<surname>Kumon</surname> <given-names>H</given-names>
</name>
<etal/>
</person-group>. <article-title>The Cysteine-Rich Core Domain of Reic/Dkk-3 Is Critical for Its Effect on Monocyte Differentiation and Tumor Regression</article-title>. <source>Oncol Rep</source> (<year>2015</year>) <volume>33</volume>(<issue>6</issue>):<page-range>2908&#x2013;14</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.3892/or.2015.3885</pub-id>
</citation>
</ref>
<ref id="B45">
<label>45</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Steinbuch</surname> <given-names>M</given-names>
</name>
<name>
<surname>Audran</surname> <given-names>R</given-names>
</name>
</person-group>. <article-title>The Isolation of Igg From Mammalian Sera With the Aid of Caprylic Acid</article-title>. <source>Arch Biochem Biophys</source> (<year>1969</year>) <volume>134</volume>(<issue>2</issue>):<page-range>279&#x2013;84</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/0003-9861(69)90285-9</pub-id>
</citation>
</ref>
<ref id="B46">
<label>46</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Griffiths</surname> <given-names>EA</given-names>
</name>
<name>
<surname>Srivastava</surname> <given-names>P</given-names>
</name>
<name>
<surname>Matsuzaki</surname> <given-names>J</given-names>
</name>
<name>
<surname>Brumberger</surname> <given-names>Z</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>ES</given-names>
</name>
<name>
<surname>Kocent</surname> <given-names>J</given-names>
</name>
<etal/>
</person-group>. <article-title>Ny-Eso-1 Vaccination in Combination With Decitabine Induces Antigen-Specific T-Lymphocyte Responses in Patients With Myelodysplastic Syndrome</article-title>. <source>Clin Cancer Res</source> (<year>2018</year>) <volume>24</volume>(<issue>5</issue>):<page-range>1019&#x2013;29</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1158/1078-0432.CCR-17-1792</pub-id>
</citation>
</ref>
<ref id="B47">
<label>47</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sato</surname> <given-names>S</given-names>
</name>
<name>
<surname>Noguchi</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Ohara</surname> <given-names>N</given-names>
</name>
<name>
<surname>Uenaka</surname> <given-names>A</given-names>
</name>
<name>
<surname>Shimono</surname> <given-names>M</given-names>
</name>
<name>
<surname>Nakagawa</surname> <given-names>K</given-names>
</name>
<etal/>
</person-group>. <article-title>Identification of Xage-1 Isoforms: Predominant Expression of Xage-1b in Testis and Tumors</article-title>. <source>Cancer Immun</source> (<year>2007</year>) <volume>7</volume>:<fpage>5</fpage>.</citation>
</ref>
<ref id="B48">
<label>48</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Nakagawa</surname> <given-names>K</given-names>
</name>
<name>
<surname>Noguchi</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Uenaka</surname> <given-names>A</given-names>
</name>
<name>
<surname>Sato</surname> <given-names>S</given-names>
</name>
<name>
<surname>Okumura</surname> <given-names>H</given-names>
</name>
<name>
<surname>Tanaka</surname> <given-names>M</given-names>
</name>
<etal/>
</person-group>. <article-title>Xage-1 Expression in Non-Small Cell Lung Cancer and Antibody Response in Patients</article-title>. <source>Clin Cancer Res</source> (<year>2005</year>) <volume>11</volume>(<issue>15</issue>):<page-range>5496&#x2013;503</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1158/1078-0432.CCR-05-0216</pub-id>
</citation>
</ref>
<ref id="B49">
<label>49</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Allison</surname> <given-names>KH</given-names>
</name>
<name>
<surname>Sledge</surname> <given-names>GW</given-names>
</name>
</person-group>. <article-title>Heterogeneity and Cancer</article-title>. <source>Oncology (Williston Park)</source> (<year>2014</year>) <volume>28</volume>(<issue>9</issue>):<page-range>772&#x2013;8</page-range>.</citation>
</ref>
<ref id="B50">
<label>50</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wang</surname> <given-names>C</given-names>
</name>
<name>
<surname>Yang</surname> <given-names>J</given-names>
</name>
<name>
<surname>Luo</surname> <given-names>H</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>K</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Xiao</surname> <given-names>ZX</given-names>
</name>
<etal/>
</person-group>. <article-title>Cancertracer: A Curated Database for Intrapatient Tumor Heterogeneity</article-title>. <source>Nucleic Acids Res</source> (<year>2020</year>) <volume>48</volume>(<issue>D1</issue>):<page-range>D797&#x2013;806</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/nar/gkz1061</pub-id>
</citation>
</ref>
<ref id="B51">
<label>51</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Correia</surname> <given-names>IR</given-names>
</name>
</person-group>. <article-title>Stability of Igg Isotypes in Serum</article-title>. <source>MAbs</source> (<year>2010</year>) <volume>2</volume>(<issue>3</issue>):<page-range>221&#x2013;32</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.4161/mabs.2.3.11788</pub-id>
</citation>
</ref>
<ref id="B52">
<label>52</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ettinger</surname> <given-names>R</given-names>
</name>
<name>
<surname>Sims</surname> <given-names>GP</given-names>
</name>
<name>
<surname>Fairhurst</surname> <given-names>AM</given-names>
</name>
<name>
<surname>Robbins</surname> <given-names>R</given-names>
</name>
<name>
<surname>da Silva</surname> <given-names>YS</given-names>
</name>
<name>
<surname>Spolski</surname> <given-names>R</given-names>
</name>
<etal/>
</person-group>. <article-title>Il-21 Induces Differentiation of Human Naive and Memory B Cells Into Antibody-Secreting Plasma Cells</article-title>. <source>J Immunol</source> (<year>2005</year>) <volume>175</volume>(<issue>12</issue>):<page-range>7867&#x2013;79</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.4049/jimmunol.175.12.7867</pub-id>
</citation>
</ref>
<ref id="B53">
<label>53</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chiappinelli</surname> <given-names>KB</given-names>
</name>
<name>
<surname>Zahnow</surname> <given-names>CA</given-names>
</name>
<name>
<surname>Ahuja</surname> <given-names>N</given-names>
</name>
<name>
<surname>Baylin</surname> <given-names>SB</given-names>
</name>
</person-group>. <article-title>Combining Epigenetic and Immunotherapy to Combat Cancer</article-title>. <source>Cancer Res</source> (<year>2016</year>) <volume>76</volume>(<issue>7</issue>):<page-range>1683&#x2013;9</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1158/0008-5472.CAN-15-2125</pub-id>
</citation>
</ref>
<ref id="B54">
<label>54</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rosenthal</surname> <given-names>R</given-names>
</name>
<name>
<surname>Cadieux</surname> <given-names>EL</given-names>
</name>
<name>
<surname>Salgado</surname> <given-names>R</given-names>
</name>
<name>
<surname>Bakir</surname> <given-names>MA</given-names>
</name>
<name>
<surname>Moore</surname> <given-names>DA</given-names>
</name>
<name>
<surname>Hiley</surname> <given-names>CT</given-names>
</name>
<etal/>
</person-group>. <article-title>Neoantigen-Directed Immune Escape in Lung Cancer Evolution</article-title>. <source>Nature</source> (<year>2019</year>) <volume>567</volume>(<issue>7749</issue>):<page-range>479&#x2013;85</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/s41586-019-1032-7</pub-id>
</citation>
</ref>
<ref id="B55">
<label>55</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yan</surname> <given-names>X</given-names>
</name>
<name>
<surname>Zhao</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Yang</surname> <given-names>Q</given-names>
</name>
<name>
<surname>Dong</surname> <given-names>L</given-names>
</name>
<name>
<surname>Wu</surname> <given-names>Z</given-names>
</name>
<etal/>
</person-group>. <article-title>Case Report: Low-Dose Decitabine Plus Anti-Pd-1 Inhibitor Camrelizumab for Previously Treated Advanced Metastatic Non-Small Cell Lung Cancer</article-title>. <source>Front Oncol</source> (<year>2020</year>) <volume>10</volume>:<elocation-id>558572</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fonc.2020.558572</pub-id>
</citation>
</ref>
<ref id="B56">
<label>56</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Woloszynska-Read</surname> <given-names>A</given-names>
</name>
<name>
<surname>Mhawech-Fauceglia</surname> <given-names>P</given-names>
</name>
<name>
<surname>Yu</surname> <given-names>J</given-names>
</name>
<name>
<surname>Odunsi</surname> <given-names>K</given-names>
</name>
<name>
<surname>Karpf</surname> <given-names>AR</given-names>
</name>
</person-group>. <article-title>Intertumor and Intratumor Ny-Eso-1 Expression Heterogeneity Is Associated With Promoter-Specific and Global DNA Methylation Status in Ovarian Cancer</article-title>. <source>Clin Cancer Res</source> (<year>2008</year>) <volume>14</volume>(<issue>11</issue>):<page-range>3283&#x2013;90</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1158/1078-0432.CCR-07-5279</pub-id>
</citation>
</ref>
<ref id="B57">
<label>57</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liu</surname> <given-names>YT</given-names>
</name>
<name>
<surname>Sun</surname> <given-names>ZJ</given-names>
</name>
</person-group>. <article-title>Turning Cold Tumors Into Hot Tumors by Improving T-Cell Infiltration</article-title>. <source>Theranostics</source> (<year>2021</year>) <volume>11</volume>(<issue>11</issue>):<page-range>5365&#x2013;86</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.7150/thno.58390</pub-id>
</citation>
</ref>
</ref-list>
</back>
</article>