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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Oncol.</journal-id>
<journal-title>Frontiers in Oncology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Oncol.</abbrev-journal-title>
<issn pub-type="epub">2234-943X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fonc.2021.753791</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Oncology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Diagnosis of Lung Cancer by ATR-FTIR Spectroscopy and Chemometrics</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Xien</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1430526"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ou</surname>
<given-names>Quanhong</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1467416"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Qian</surname>
<given-names>Kai</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Jianru</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bai</surname>
<given-names>Zhixun</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Weiye</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Shi</surname>
<given-names>Youming</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Liu</surname>
<given-names>Gang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1431804"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>School of Physics and Electronic Information, Yunnan Normal University</institution>, <addr-line>Kunming</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Thoracic Surgery, The First People&#x2019;s Hospital of Yunnan Province</institution>, <addr-line>Kunming</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Department of Clinical Laboratory, Affiliated Hospital of Zunyi Medical University</institution>, <addr-line>Zunyi</addr-line>, <country>China</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Department of Internal Medicine, The Second Affiliated Hospital of Zunyi Medical University</institution>, <addr-line>Zunyi</addr-line>, <country>China</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>School of Physics and Electronic Engineering, Qujing Normal University</institution>, <addr-line>Qujing</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Haibin Shi, Soochow University, China</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Xihui Bian, Tianjin Polytechnic University, China; Yao Sun, Central China Normal University, China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Gang Liu, <email xlink:href="mailto:gliu66@163.com">gliu66@163.com</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Cancer Imaging and Image-directed Interventions, a section of the journal Frontiers in Oncology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>30</day>
<month>09</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>11</volume>
<elocation-id>753791</elocation-id>
<history>
<date date-type="received">
<day>12</day>
<month>08</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>15</day>
<month>09</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Yang, Ou, Qian, Yang, Bai, Yang, Shi and Liu</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Yang, Ou, Qian, Yang, Bai, Yang, Shi and Liu</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Lung cancer is the leading cause of cancer-related death in the world. Early diagnosis has great significance for the survival of patients with lung cancer. In this paper, attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy combined with chemometrics was used to study the serum samples from patients with lung cancer and healthy people. The results of spectral band area comparison showed that the concentrations of protein, lipid and nucleic acids molecules in serum of patients with lung cancer were increased compared with those in healthy people. The original spectra were preprocessed to improve the accuracy of principal component regression (PCR) and partial least squares-discriminant analysis (PLS-DA) models. PLS-DA results for first derivative spectral data in nucleic acids (1250-1000cm<sup>-1</sup>) band showed 80% sensitivity, 91.89% specificity and 87.10% accuracy with high <inline-formula>
<mml:math display="inline" id="im1">
<mml:mrow>
<mml:msubsup>
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</mml:msubsup>
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</inline-formula> of 0.8153, low RMSEC of 0.3136 and RMSEV of 0.4180. It is shown that ATR-FTIR spectroscopy combined with chemometrics might be developed as a simple method for clinical screening and diagnosis of lung cancer.</p>
</abstract>
<kwd-group>
<kwd>lung cancer</kwd>
<kwd>serum</kwd>
<kwd>ATR-FTIR spectroscopy</kwd>
<kwd>Beer-Lambert law</kwd>
<kwd>chemometrics</kwd>
</kwd-group>
<counts>
<fig-count count="5"/>
<table-count count="3"/>
<equation-count count="3"/>
<ref-count count="38"/>
<page-count count="7"/>
<word-count count="3425"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Lung cancer is the leading cause of cancer-related death in the world. It causes more than 2.2 million new cancer cases and 1.8 million deaths, accounting for 18% of all cancer deaths in 2020 (<xref ref-type="bibr" rid="B1">1</xref>). The cause of lung cancer is largely attributed to smoking and genetic inheritance (<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B3">3</xref>). Lung cancer lacks early diagnostic biomarkers. Most patients with lung cancer are already in advanced stage when diagnosed. The treatment effect of patients with advanced lung cancer is poor, and the survival rate is still expected to be less than 15% (<xref ref-type="bibr" rid="B4">4</xref>, <xref ref-type="bibr" rid="B5">5</xref>). Therefore, early diagnosis has great significance for the survival of patients with lung cancer.</p>
<p>The traditional clinical diagnosis method is based on the histological examination of tumor tissue samples, but it is invasive and difficult to repeatedly biopsy for dynamic monitoring (<xref ref-type="bibr" rid="B6">6</xref>). Common screening methods, such as chest X-rays (CXR), magnetic resonance imaging (MRI) and low-dose computed tomography (LDCT), have some disadvantages. CXR examination cannot fully show early lung lesions with high false negatives. MRI has low sensitivity and cannot be used in patients with particular metal-based implants, pacemakers, and those suffering from acute claustrophobia (<xref ref-type="bibr" rid="B7">7</xref>). LDCT has high rates of false-positive results and adverse effects caused by exposure to hazardous radiation (<xref ref-type="bibr" rid="B4">4</xref>, <xref ref-type="bibr" rid="B8">8</xref>&#x2013;<xref ref-type="bibr" rid="B10">10</xref>). The existing light-induced theranostic platforms also have several limitations such as tissue absorption and limited imaging (<xref ref-type="bibr" rid="B11">11</xref>). Therefore, there is a need for a sample diagnostic method for the diagnosis of lung cancer.</p>
<p>In recent years, vibrational spectroscopic techniques such as Fourier transform infrared (FTIR) spectroscopy and Raman spectroscopy have been widely used in biological samples due to their low cost and small sample consumption (<xref ref-type="bibr" rid="B12">12</xref>). Unfortunately, Raman spectroscopy has some limitations because of its strong fluorescence background and weak signal. However, these limitations are not associated with infrared spectroscopy (<xref ref-type="bibr" rid="B13">13</xref>). There have been reported that infrared spectroscopy was used to analyze the lung tissue. Bangaoil et&#xa0;al. classified malignant and benign lung tissue sections using infrared spectroscopy combined with principal component analysis (PCA) and hierarchical cluster analysis (HCA). The finally analysis results were consistent with histopathological conclusions (<xref ref-type="bibr" rid="B14">14</xref>). Kaznowska et&#xa0;al. studied the tissue samples from healthy people and patients with lung cancer using infrared spectroscopy, and found the corresponding wavenumber changes of the functional groups in lipids, carbohydrates, proteins, DNA and phospholipids (<xref ref-type="bibr" rid="B15">15</xref>). However, the tissue samples in these studies still need to be collected from surgery, which is highly invasive. Wang et&#xa0;al. studied the FTIR spectra of serum samples by drying the serum on BaF2 window under vacuum, and found that there were differences in the protein secondary structure of serum between the patients with lung cancer and healthy people (<xref ref-type="bibr" rid="B16">16</xref>). However, there is still a lot of work to be done in the practical application of infrared spectroscopy in the clinical diagnosis of lung cancer.</p>
<p>In this paper, ATR-FTIR spectroscopy combined with chemometrics was used to study the serum samples from patients with lung cancer and healthy people in order to explore a simple diagnostic method for lung cancer and lay the foundation for the clinical application of infrared spectroscopy in the diagnosis of lung cancer in the future.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="s2_1">
<title>Samples Preparation</title>
<p>Serum samples were provided by The First People&#x2019;s Hospital of Yunnan Province. All subjects had given informed consent to be included before they participated in the study. The study was conducted in accordance with the Declaration of Helsinki, and the protocol was approved by the Ethics Committee of Yunnan Normal University (Number: ynnuethic2021-13). Serum samples from 92 patients with lung cancer and 155 samples from healthy people were collected. The information of patients with lung cancer and healthy people was listed in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>. 50&#x3bc;l serum samples was placed on a glass slide and dried in a vacuum oven at room temperature (25&#xb0;C) for 40 minutes. The purpose of vacuum pumping is to accelerate the drying speed. Drying in the vacuum drying oven can ensure that the sample will not be polluted and oxidized, and the organic substance will not be destroyed within 40 minutes. Then the serum was removed from the slide for measuring ATR-FTIR spectrum. Before sampling, the glass slides were soaked with aqua regia for 1 hour, washed with water and then soaked in acetone for 1 hour, and finally washed with ultrapure water and dried for use.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>The information of patients with lung cancer and healthy people.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" rowspan="2" align="left"/>
<th valign="top" rowspan="2" align="center">Mean age &#xb1; SD</th>
<th valign="top" colspan="2" align="center">Sex</th>
</tr>
<tr>
<th valign="top" align="center">Male (n)</th>
<th valign="top" align="center">Female (n)</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Patients with lung cancer</td>
<td valign="top" align="center">56 &#xb1; 9</td>
<td valign="top" align="center">59</td>
<td valign="top" align="center">33</td>
</tr>
<tr>
<td valign="top" align="left">Healthy people</td>
<td valign="top" align="center">42 &#xb1; 12</td>
<td valign="top" align="center">96</td>
<td valign="top" align="center">59</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s2_2">
<title>ATR-FTIR Spectroscopy</title>
<p>ATR-FTIR spectra were measured in the range of 4000-600cm<sup>-1</sup> by a Frontier spectrometer (Perkin Elmer, UK), coupled with an ATR accessory and a deuterated triglycine sulfate (DTGS) detector. Each spectrum was an accumulation of 32 scans at a resolution of 4cm<sup>-1</sup>. The dried serum sample was transferred to the crystal plate, and then pressed with pressure tip to ensure the best contact with the crystal surface. The air background spectrum was recorded before each sample scan and automatically deducted when the sample was tested. After each measurement, the crystal surface was cleaned with ethanol and ultrapure water, and then dried with a dust-free paper. Three IR spectra were collected for each serum sample and the resulting spectra were averaged using OMNIC 8.2 software (Thermo Scientific).</p>
</sec>
<sec id="s2_3">
<title>Spectral Data Preprocessing</title>
<p>The influence of noise and irrelevant information can be eliminated by proper preprocessing of the original spectra. This increases the accuracy of the analytical model and improves the signal-to-noise ratio (<xref ref-type="bibr" rid="B17">17</xref>). Baseline correction (BL) is a necessary processing method in infrared spectroscopy, which is helpful for further qualitative or quantitative analysis (<xref ref-type="bibr" rid="B18">18</xref>). Savitzky-Golay (SG) smoothing is adopted to increase the spectral quality by eliminating random noise. Derivative processing can eliminate background interference and spectral overlap, and minimize baseline drift caused by the differences in optical setups (<xref ref-type="bibr" rid="B19">19</xref>). Multiplicative scatter correction (MSC) is aimed to effectively eliminate the influence of scattering and improve the spectral information to obtain a relatively ideal spectrum (<xref ref-type="bibr" rid="B20">20</xref>). Standard normal variate (SNV) is used to reduce baseline shifting or tilt due to scattering and the change of light distance (<xref ref-type="bibr" rid="B21">21</xref>). It subtracts the average intensity from the spectral intensity to achieve offset correction, and then divides the standard deviation to reduce the multiplicative effect (<xref ref-type="bibr" rid="B22">22</xref>).</p>
</sec>
<sec id="s2_4">
<title>Spectral Band Area Analysis</title>
<p>The spectral band area was measured using OriginPro 9.1 software (OriginLab Corporation, Northampton, MA). The obtained results were presented as mean &#xb1; SEM (standard mean error). For statistics, independent sample t test was processed using SPSS 19 software (SPSS, Inc., Chicago, IL) and GraphPad Prim 9.0 (GraphPad Software Inc., CA, USA). The statistical significance was signified as less than or equal to p &lt; 0.05*, p &lt; 0.01**, p &lt; 0.001***, and p &lt; 0.0001****.</p>
</sec>
<sec id="s2_5">
<title>Chemometrics Analysis</title>
<p>Principal component regression (PCR) and partial least squares-discriminant analysis (PLS-DA) were performed to analyze the spectral data using Unscrambler X 10.4 software (Camo Software AS, Oslo, Norway). PCR is a regression analysis based on PCA (<xref ref-type="bibr" rid="B23">23</xref>). It decomposes the X matrix by PCA, and then takes the transformed new variables as predictive variables for multiple linear regression (MLR) (<xref ref-type="bibr" rid="B24">24</xref>). PLS-DA is a linear supervised classification technique combining partial least squares (PLS) regression with linear discriminant analysis (LDA) (<xref ref-type="bibr" rid="B25">25</xref>). It can find variables and directions from the multivariate space to distinguish the categories in the calibration set (<xref ref-type="bibr" rid="B26">26</xref>).</p>
<p>After preprocessing the spectral data, they were randomly divided into calibration set (69 serum samples from patients with lung cancer and 116 serum samples from healthy people) and validation set (23 serum samples from patients with lung cancer and 39 serum samples from healthy people) according to the ratio of 3:1 for model work. The performance of the regression model was evaluated by calculating the square of the correlation coefficient (R<sup>2</sup>) and the root mean square error (RMSE) (<xref ref-type="bibr" rid="B27">27</xref>). The sensitivity, specificity and accuracy were used to evaluate the judgment ability of the diagnostic model. The corresponding formula is as follows:</p>
<disp-formula>
<label>(1)</label> <mml:math display="block" id="M1">
<mml:mrow>
<mml:mtext>Sensitivity</mml:mtext>
<mml:mo>=</mml:mo>
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</mml:mrow>
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<mml:mo>+</mml:mo>
<mml:mtext>FN</mml:mtext>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#xd7;</mml:mo>
<mml:mn>100</mml:mn>
<mml:mo>%</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<disp-formula>
<label>(2)</label> <mml:math display="block" id="M2">
<mml:mrow>
<mml:mtext>Specificity</mml:mtext>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mtext>TN</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mtext>TN</mml:mtext>
<mml:mo>+</mml:mo>
<mml:mtext>FP</mml:mtext>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#xd7;</mml:mo>
<mml:mn>100</mml:mn>
<mml:mo>%</mml:mo>
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</mml:math>
</disp-formula>
<disp-formula>
<label>(3)</label>
<mml:math display="block" id="M3">
<mml:mrow>
<mml:mtext>Accuracy</mml:mtext>
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</mml:mrow>
<mml:mrow>
<mml:mtext>TP</mml:mtext>
<mml:mo>+</mml:mo>
<mml:mtext>TN</mml:mtext>
<mml:mo>+</mml:mo>
<mml:mtext>FP</mml:mtext>
<mml:mo>+</mml:mo>
<mml:mtext>FN</mml:mtext>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#xd7;</mml:mo>
<mml:mn>100</mml:mn>
<mml:mo>%</mml:mo>
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</mml:math>
</disp-formula>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results and Discussion</title>
<sec id="s3_1">
<title>ATR-FTIR Spectra of Serum</title>
<p>
<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref> shows the IR spectra after baseline correction and SG smoothing (9-point) of serum samples from patients with lung cancer and healthy people. The average IR spectra of them are shown in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>. It can be seen that the main components of serum are protein, lipid and nucleic acids. The amide I protein (1700-1600cm<sup>&#x2212;1</sup>) band mainly originated from the &#x3b1;-helix structure at 1646cm<sup>-1</sup> (<xref ref-type="bibr" rid="B28">28</xref>). The amide II protein (1560-1500cm<sup>&#x2212;1</sup>) band mainly originated from the N-H functional group at 1542cm<sup>-1</sup> (<xref ref-type="bibr" rid="B29">29</xref>). The peak at 1740cm<sup>&#x2212;1</sup> was attributed to the C=O stretching vibration from ester carbonyl in triglycerides (<xref ref-type="bibr" rid="B25">25</xref>). The spectral band of 3000-2800cm<sup>&#x2212;1</sup> was mainly correlated with the lipid-related C-H asymmetric stretching vibration of CH<sub>3</sub> at 2959cm<sup>-1</sup> and CH<sub>2</sub> at 2930cm<sup>-1</sup> (<xref ref-type="bibr" rid="B30">30</xref>, <xref ref-type="bibr" rid="B31">31</xref>). The spectral band of 1250-1000cm<sup>&#x2212;1</sup> was correlated with the P=O asymmetric stretching vibration at 1243cm<sup>-1</sup> and symmetric stretching vibration at 1079cm<sup>-1</sup> of <inline-formula>
<mml:math display="inline" id="im3">
<mml:mrow>
<mml:mtext>P</mml:mtext>
<mml:msubsup>
<mml:mtext>O</mml:mtext>
<mml:mn>2</mml:mn>
<mml:mo>&#x2212;</mml:mo>
</mml:msubsup>
</mml:mrow>
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</inline-formula> in nucleic acids (<xref ref-type="bibr" rid="B32">32</xref>). It could be observed that the absorbance of average IR spectrum in serum from patients with lung cancer was significantly increased at nucleic acids band compared with healthy people. However, there were no significant differences in amide I, amide II and lipid bands in average IR spectra.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>The IR spectra after baseline correction and SG smoothing (9-point) of serum samples from patients with lung cancer <bold>(A)</bold> and healthy people <bold>(B)</bold>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-11-753791-g001.tif"/>
</fig>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>The average IR spectra of the serum from patients with lung cancer and healthy people.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-11-753791-g002.tif"/>
</fig>
</sec>
<sec id="s3_2">
<title>Comparison of Spectral Band Area</title>
<p>To further analyze the differences between serum of patients with lung cancer and healthy people in these four bands, we showed the statistical analysis results of the spectral band area of serum samples in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>. It can be observed that the spectral band area of patients with lung cancer was significantly increased in amide I, amide II and nucleic acids bands compared with healthy people (p &lt; 0.0001). Although the increased area in lipid band was not significant compared with the other three bands, there was still a statistical difference between the two groups of serum samples (p &lt; 0.05). According to Beer-Lambert law, the increase of the absorbance of the spectral band indicates the increase of the corresponding functional group concentration (<xref ref-type="bibr" rid="B31">31</xref>). Therefore, the concentrations of protein, lipid and nucleic acids molecules in serum of patients with lung cancer were increased compared with those in healthy people. This may be due to the aerobic glycolysis in cancer cells that produces a large number of biosynthetic intermediates such as lipid, protein and nucleotide, which are used for the growth and proliferation of cancer cells (<xref ref-type="bibr" rid="B33">33</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>The spectral band area of patients with lung cancer and healthy people. Amide I protein (1700-1600cm<sup>&#x2212;1</sup>) band <bold>(A)</bold>, Amide II protein (1560-1500cm<sup>&#x2212;1</sup>) band <bold>(B)</bold>, lipid (3000-2800cm<sup>&#x2212;1</sup>) band <bold>(C)</bold> and nucleic acids (1250-1000cm<sup>&#x2212;1</sup>) band <bold>(D)</bold>. The statistical significance was signified as less than or equal to p &lt; 0.05* and p &lt; 0.0001****.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-11-753791-g003.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>Chemometrics Analysis</title>
<p>In order to evaluate the classification effect of these four bands on serum of patients with lung cancer and healthy people, PCR and PLS-DA were performed on the spectral data after preprocessing using full cross-validation. A model with a low value of RMSE and a high value of R<sup>2</sup> closer to 1 is considered to be a good model (<xref ref-type="bibr" rid="B24">24</xref>, <xref ref-type="bibr" rid="B34">34</xref>).</p>
<p>
<xref ref-type="table" rid="T2">
<bold>Tables&#xa0;2</bold>
</xref>, <xref ref-type="table" rid="T3">
<bold>3</bold>
</xref> show the calibration and validation results of PCR and PLS-DA. Although good classification accuracy appeared under the PCR model, the values of R<sup>2</sup> and RMSE were lower than those of PLS-DA. The PLS-DA model for first derivative spectral data in nucleic acids band (1250-1000cm<sup>-1</sup>) showed the best calibration model with <inline-formula>
<mml:math display="inline" id="im12">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>c</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> of 0.8949 and RMSEC of 0.3136. The values of <inline-formula>
<mml:math display="inline" id="im13">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>v</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> and RMSEV in its corresponding validation model were 0.8153 and 0.4180, respectively. The results of this model showed 80% sensitivity, 91.89% specificity and 87.70% accuracy.</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Calibration and validation results of PCR for the spectral data after preprocessing.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Spectral band</th>
<th valign="top" align="center">Preprocessing</th>
<th valign="top" align="center">
<inline-formula>
<mml:math display="inline" id="im4">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>c</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</th>
<th valign="top" align="center">RMSEC</th>
<th valign="top" align="center">
<inline-formula>
<mml:math display="inline" id="im5">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>v</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</th>
<th valign="top" align="center">RMSEV</th>
<th valign="top" align="center">Sensitivity</th>
<th valign="top" align="center">Specificity</th>
<th valign="top" align="center">Accuracy</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">3000-2800cm<sup>-1</sup>
</td>
<td valign="top" align="center">BL+SG<break/>1D<break/>2D<break/>2D+MSC<break/>2D+SNV</td>
<td valign="top" align="center">0.2096<break/>0.2142<break/>0.2584<break/>0.3773<break/>0.4332</td>
<td valign="top" align="center">0.8599<break/>0.8574<break/>0.8329<break/>0.7632<break/>0.7282</td>
<td valign="top" align="center">0.1607<break/>0.1675<break/>0.1969<break/>0.3292<break/>0.3819</td>
<td valign="top" align="center">0.8909<break/>0.8873<break/>0.8715<break/>0.7965<break/>0.7645</td>
<td valign="top" align="center">44%<break/>88.46%<break/>81.82%<break/>41.84%<break/>62.96%</td>
<td valign="top" align="center">67.57%<break/>100%<break/>87.50%<break/>75.61%<break/>82.86%</td>
<td valign="top" align="center">58.07%<break/>95.16%<break/>85.48%<break/>70.97%<break/>74.19%</td>
</tr>
<tr>
<td valign="top" align="left">1700-1600cm<sup>-1</sup>
</td>
<td valign="top" align="center">BL+SG<break/>1D<break/>2D<break/>2D+MSC<break/>2D+SNV</td>
<td valign="top" align="center">0.6979<break/>0.6033<break/>0.4650<break/>0.4802<break/>0.4845</td>
<td valign="top" align="center">0.5316<break/>0.6092<break/>0.7074<break/>0.6973<break/>0.6945</td>
<td valign="top" align="center">0.6790<break/>0.5768<break/>0.4437<break/>0.4547<break/>0.4587</td>
<td valign="top" align="center">0.5510<break/>0.6326<break/>0.7253<break/>0.7181<break/>0.7155</td>
<td valign="top" align="center">95.83%<break/>80%<break/>74.07%<break/>70%<break/>72.73%</td>
<td valign="top" align="center">100%<break/>83.33%<break/>91.43%<break/>78.57%<break/>82.5%</td>
<td valign="top" align="center">98.39%<break/>82.26%<break/>83.87%<break/>75.81%<break/>79.03%</td>
</tr>
<tr>
<td valign="top" align="left">1560-1500cm<sup>-1</sup>
</td>
<td valign="top" align="center">BL+SG<break/>1D<break/>2D<break/>2D+MSC<break/>2D+SNV</td>
<td valign="top" align="center">0.5930<break/>0.6028<break/>0.2252<break/>0.4719<break/>0.4091</td>
<td valign="top" align="center">0.6171<break/>0.6095<break/>0.8513<break/>0.7029<break/>0.7436</td>
<td valign="top" align="center">0.5773<break/>0.5729<break/>0.1680<break/>0.4373<break/>0.3684</td>
<td valign="top" align="center">0.6323<break/>0.6355<break/>0.8870<break/>0.7295<break/>0.7728</td>
<td valign="top" align="center">100%<break/>89.47%<break/>67.86%<break/>73.08%<break/>72.22%</td>
<td valign="top" align="center">100%<break/>86.05%<break/>88.24%<break/>88.89%<break/>77.27%</td>
<td valign="top" align="center">100%<break/>87.10%<break/>79.03%<break/>82.26%<break/>75.81%</td>
</tr>
<tr>
<td valign="top" align="left">1250-1000cm<sup>-1</sup>
</td>
<td valign="top" align="center">BL+SG<break/>1D<break/>2D<break/>2D+MSC<break/>2D+SNV</td>
<td valign="top" align="center">0.5743<break/>0.5954<break/>0.6895<break/>0.5426<break/>0.5235</td>
<td valign="top" align="center">0.6311<break/>0.6152<break/>0.5390<break/>0.6541<break/>0.6676</td>
<td valign="top" align="center">0.5619<break/>0.5612<break/>0.6643<break/>0.5134<break/>0.5195</td>
<td valign="top" align="center">0.6437<break/>0.6442<break/>0.5635<break/>0.6784<break/>0.6741</td>
<td valign="top" align="center">100%<break/>95.24%<break/>100%<break/>100%<break/>100%</td>
<td valign="top" align="center">86.67%<break/>92.68%<break/>86.67%<break/>81.25%<break/>82.93%</td>
<td valign="top" align="center">90.32%<break/>93.55%<break/>90.32%<break/>85.48%<break/>80.65%</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<inline-formula>
<mml:math display="inline" id="im6">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>c</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, The square of the correlation coefficient in the calibration set; RMSEC, The root mean square error of calibration set; <inline-formula>
<mml:math display="inline" id="im7">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>v</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, The square of the correlation coefficient in the validation set; RMSEV, The root mean square error of validation set; 1D, First derivative spectra; 2D, Second derivative spectra.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>Calibration and validation results of PLS-DA for the spectral data after preprocessing.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Spectral band</th>
<th valign="top" align="center">Preprocessing</th>
<th valign="top" align="center">
<inline-formula>
<mml:math display="inline" id="im8">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>c</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</th>
<th valign="top" align="center">RMSEC</th>
<th valign="top" align="center">
<inline-formula>
<mml:math display="inline" id="im9">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>v</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</th>
<th valign="top" align="center">RMSEV</th>
<th valign="top" align="center">Sensitivity</th>
<th valign="top" align="center">Specificity</th>
<th valign="top" align="center">Accuracy</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">3000-2800cm<sup>-1</sup>
</td>
<td valign="top" align="center">BL+SG<break/>1D<break/>2D<break/>2D+MSC<break/>2D+SNV</td>
<td valign="top" align="center">0.4733<break/>0.6879<break/>0.5830<break/>0.6014<break/>0.5866</td>
<td valign="top" align="center">0.7019<break/>0.5404<break/>0.6246<break/>0.6106<break/>0.6219</td>
<td valign="top" align="center">0.4185<break/>0.5220<break/>0.4262<break/>0.4584<break/>0.4965</td>
<td valign="top" align="center">0.7416<break/>0.6723<break/>0.7367<break/>0.7157<break/>0.6900</td>
<td valign="top" align="center">84.21%<break/>80%<break/>68.97%<break/>62.96%<break/>59.38%</td>
<td valign="top" align="center">83.72%<break/>91.89%<break/>90.91%<break/>82.86%<break/>86.67%</td>
<td valign="top" align="center">83.87%<break/>87.10%<break/>80.65%<break/>74.19%<break/>72.58%</td>
</tr>
<tr>
<td valign="top" align="left">1700-1600cm<sup>-1</sup>
</td>
<td valign="top" align="center">BL+SG<break/>1D<break/>2D<break/>2D+MSC<break/>2D+SNV</td>
<td valign="top" align="center">0.6699<break/>0.7027<break/>0.6411<break/>0.6184<break/>0.6077</td>
<td valign="top" align="center">0.5557<break/>0.5274<break/>0.5794<break/>0.5975<break/>0.6058</td>
<td valign="top" align="center">0.6657<break/>0.6320<break/>0.5742<break/>0.5459<break/>0.5417</td>
<td valign="top" align="center">0.5623<break/>0.5899<break/>0.6346<break/>0.6553<break/>0.6583</td>
<td valign="top" align="center">85.19%<break/>73.91%<break/>61.11%<break/>71.43%<break/>76%</td>
<td valign="top" align="center">100%<break/>84.62%<break/>96.15%<break/>80.49%<break/>89.190%</td>
<td valign="top" align="center">93.55%<break/>80.65%<break/>75.81%<break/>77.42%<break/>83.87%</td>
</tr>
<tr>
<td valign="top" align="left">1560-1500cm<sup>-1</sup>
</td>
<td valign="top" align="center">BL+SG<break/>1D<break/>2D<break/>2D+MSC<break/>2D+SNV</td>
<td valign="top" align="center">0.6526<break/>0.7070<break/>0.6331<break/>0.5892<break/>0.5982</td>
<td valign="top" align="center">0.5700<break/>0.5235<break/>0.5858<break/>0.6199<break/>0.6131</td>
<td valign="top" align="center">0.6210<break/>0.6641<break/>0.5857<break/>0.5118<break/>0.5345</td>
<td valign="top" align="center">0.5987<break/>0.5636<break/>0.6259<break/>0.6794<break/>0.6635</td>
<td valign="top" align="center">65.71%<break/>84.62%<break/>85.19%<break/>100%<break/>95.46%</td>
<td valign="top" align="center">100%<break/>97.22%<break/>100%<break/>97.5%<break/>95%</td>
<td valign="top" align="center">80.65%<break/>91.94%<break/>93.55%<break/>98.39%<break/>95.16%</td>
</tr>
<tr>
<td valign="top" align="left">1250-1000cm<sup>-1</sup>
</td>
<td valign="top" align="center">BL+SG<break/>
<bold>1D</bold>
<break/>2D<break/>2D+MSC<break/>2D+SNV</td>
<td valign="top" align="center">0.6930<break/>
<bold>0.8949</bold>
<break/>0.8516<break/>0.8105<break/>0.7916</td>
<td valign="top" align="center">0.5359<break/>
<bold>0.3136</bold>
<break/>0.3726<break/>0.4210<break/>0.4415</td>
<td valign="top" align="center">0.6529<break/>
<bold>0.8153</bold>
<break/>0.7741<break/>0.6965<break/>0.6827</td>
<td valign="top" align="center">0.5729<break/>
<bold>0.4180</bold>
<break/>0.4622<break/>0.5358<break/>0.5478</td>
<td valign="top" align="center">91.30%<break/>
<bold>80%</bold>
<break/>100%<break/>88%<break/>94.74%</td>
<td valign="top" align="center">94.87%<break/>
<bold>91.89%</bold>
<break/>97.5%<break/>97.30%<break/>88.37%</td>
<td valign="top" align="center">93.55%<break/>
<bold>87.10%</bold>
<break/>98.39%<break/>93.55%<break/>90.32%</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<inline-formula>
<mml:math display="inline" id="im10">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>c</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, The square of the correlation coefficient in the calibration set; RMSEC, The root mean square error of calibration set; <inline-formula>
<mml:math display="inline" id="im11">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>v</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, The square of the correlation coefficient in the validation set; RMSEV, The root mean square error of validation set; 1D, First derivative spectra; 2D, Second derivative spectra.</p>
<p>The bold values in this table are the best preprocessing conditions and results of the model in this article. The purpose of bold is to facilitate the reader's reading, and it is not necessary to deliberately annotate it.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>
<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref> shows the score plot of Factor-1 and Factor-2 using PLS-DA model for first derivative spectral data in nucleic acids (1250-1000cm<sup>&#x2212;1</sup>) band. The first two factors indicate that 65% (X1 36%, X2 27%) of the X variance, explains 58% (Y1 50%, Y2 8%) of the sample classification level. It can be seen that serum samples are distributed into two clusters along the Factor-1. The red cluster is mainly composed of serum samples from patients with lung cancer, and the black cluster is mainly composed of serum samples from healthy people. In this model, 80% of patients with lung cancer were correctly identified, 91.89% of healthy people were correctly separated, and the total accuracy rate was 87.10%.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Score plot of Factor-1 and Factor-2.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-11-753791-g004.tif"/>
</fig>
<p>
<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref> shows the loading plot of Factor-1 for identifying the peaks with high weights in classifying samples. There are positively weighted peaks around 1176cm<sup>-1</sup>, 1130cm<sup>-1</sup>, 1085cm<sup>-1</sup> and 1043cm<sup>-1</sup>, of which 1176cm<sup>-1</sup> was related to the vibration band of sugar-phosphate, 1130cm<sup>-1</sup> was assigned to the C=O stretching vibration of ribose in RNA (<xref ref-type="bibr" rid="B32">32</xref>), 1085cm<sup>-1</sup> was ascribed to the symmetric phosphate vibrations (<xref ref-type="bibr" rid="B35">35</xref>), 1043cm<sup>-1</sup> was attributed to the stretching vibration and bending vibration of C-O in carbohydrates (<xref ref-type="bibr" rid="B14">14</xref>). Two positively weighted peaks at 1226cm<sup>-1</sup> and 1026cm<sup>-1</sup>, of which 1226cm<sup>-1</sup> was due to the asymmetric stretching vibration of <inline-formula>
<mml:math display="inline" id="im14">
<mml:mrow>
<mml:mtext>P</mml:mtext>
<mml:msubsup>
<mml:mtext>O</mml:mtext>
<mml:mn>2</mml:mn>
<mml:mo>&#x2212;</mml:mo>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> in nucleic acids (<xref ref-type="bibr" rid="B36">36</xref>), 1026cm<sup>-1</sup> was related to the stretching vibration of C-O and bending vibration of C-H in aromatic amino acids (<xref ref-type="bibr" rid="B37">37</xref>). Therefore, the loading plot of Factor-1 showed that <inline-formula>
<mml:math display="inline" id="im15">
<mml:mrow>
<mml:mtext>P</mml:mtext>
<mml:msubsup>
<mml:mtext>O</mml:mtext>
<mml:mn>2</mml:mn>
<mml:mo>&#x2212;</mml:mo>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> in nucleic acids play a key role in distinguishing the serum patients with lung cancer from that of healthy people. This may be due to DNA damage caused by oxidative chemical mutagenic aberrations in serum of patients with lung cancer (<xref ref-type="bibr" rid="B38">38</xref>).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Loading plot of Factor-1.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-11-753791-g005.tif"/>
</fig>
</sec>
</sec>
<sec id="s4" sec-type="conclusions">
<title>Conclusions</title>
<p>ATR-FTIR spectroscopy combined with chemometrics was used to study the serum of patients with lung cancer and healthy people. The results of spectral band area comparison showed that the concentrations of protein, lipid and nucleic acids molecules in serum of patients with lung cancer were increased compared with those in healthy people. PCR and PLS-DA were performed on the spectral data after different preprocessing. PLS-DA model for first derivative spectral data in nucleic acids (1250-1000cm<sup>-1</sup>) band is the best model with high <inline-formula>
<mml:math display="inline" id="im16">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>c</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> of 0.8949 and <inline-formula>
<mml:math display="inline" id="im17">
<mml:mrow>
<mml:msubsup>
<mml:mtext>R</mml:mtext>
<mml:mtext>v</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> of 0.8153, low RMSEC of 0.3136 and RMSEV of 0.4180. The corresponding PLS-DA results showed 80% sensitivity, 91.89% specificity and 87.70% accuracy. The results showed that ATR-FTIR spectroscopy combined with chemometrics could effectively distinguish the serum of patients with lung cancer from that of healthy people.</p>
</sec>
<sec id="s5" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s6" sec-type="ethics-statement">
<title>Ethics Statement</title>
<p>The protocol was approved by the Ethics Committee of Yunnan Normal University (Number: ynnuethic2021-13). The patients/participants provided their written informed consent to participate in this study.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author Contributions</title>
<p>XY designed the project and completed all the research. KQ, JY, ZB, and WY provided medical instruction. XY, QO, YS, and GL wrote the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by the National Natural Science Foundation of China (Grant No. 31760341), Yunnan province University Science and Technology Innovation Team Support Scheme.</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgments</title>
<p>The authors are grateful for these financial supports.</p>
</ack>
<ref-list>
<title>References</title>
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</name>
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</name>
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</name>
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