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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Oncol.</journal-id>
<journal-title>Frontiers in Oncology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Oncol.</abbrev-journal-title>
<issn pub-type="epub">2234-943X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fonc.2013.00010</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Immunology</subject>
<subj-group>
<subject>Hypothesis and Theory Article</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Single-cell protein secretomic signatures as potential correlates to tumor cell lineage evolution and cell&#x02013;cell interaction</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Kwak</surname> <given-names>Minsuk</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Mu</surname> <given-names>Luye</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Lu</surname> <given-names>Yao</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Chen</surname> <given-names>Jonathan J.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Brower</surname> <given-names>Kara</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Fan</surname> <given-names>Rong</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Biomedical Engineering, Yale University</institution> <country>New Haven, CT, USA</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Electrical Engineering, Yale University</institution> <country>New Haven, CT, USA</country></aff>
<aff id="aff3"><sup>3</sup><institution>Isoplexis Inc.</institution> <country>New Haven, CT, USA</country></aff>
<aff id="aff4"><sup>4</sup><institution>Yale Comprehensive Cancer Center</institution> <country>New Haven, CT, USA</country>
</aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: <italic>Chao Ma, California Institute of Technology, USA</italic></p></fn>
<fn fn-type="edited-by"><p>Reviewed by: <italic>Luis De La Cruz-Merino, Hospital Universitario Virgen Macarena, Spain; Jianping Fu, University of Michigan, USA</italic></p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: <italic>Rong Fan, Department of Biomedical Engineering, Yale University, 55 Prospect Street, New Haven, CT 06511, USA. e-mail: <email>rong.fan@yale.edu</email></italic></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Frontiers in Tumor Immunity, a specialty of Frontiers in Oncology.</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>06</day>
<month>02</month>
<year>2013</year>
</pub-date>
<pub-date pub-type="collection">
<year>2013</year>
</pub-date>
<volume>3</volume>
<elocation-id>10</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>12</month>
<year>2012</year>
</date>
<date date-type="accepted">
<day>11</day>
<month>01</month>
<year>2013</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; Kwak, Mu, Lu, Chen, Brower and Fan.</copyright-statement>
<copyright-year>2013</copyright-year>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0/"><p> This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and subject to any copyright notices concerning any third-party graphics etc.</p></license>
</permissions>
<abstract>
<p>Secreted proteins including cytokines, chemokines, and growth factors represent important functional regulators mediating a range of cellular behavior and cell&#x02013;cell paracrine/autocrine signaling, e.g., in the immunological system (<xref ref-type="bibr" rid="B68">Rothenberg, 2007</xref>), tumor microenvironment (<xref ref-type="bibr" rid="B33">Hanahan and Weinberg, 2011</xref>), or stem cell niche (<xref ref-type="bibr" rid="B28">Gnecchi etal., 2008</xref>). Detection of these proteins is of great value not only in basic cell biology but also for diagnosis and therapeutic monitoring of human diseases such as cancer. However, due to co-production of multiple effector proteins from a single cell, referred to as <italic>polyfunctionality</italic>, it is biologically informative to measure a panel of secreted proteins, or secretomic signature, at the level of single cells. Recent evidence further indicates that a genetically identical cell population can give rise to diverse phenotypic differences (<xref ref-type="bibr" rid="B57">Niepel etal., 2009</xref>). Non-genetic heterogeneity is also emerging as a potential barrier to accurate monitoring of cellular immunity and effective pharmacological therapies (<xref ref-type="bibr" rid="B14">Cohen etal., 2008</xref>; <xref ref-type="bibr" rid="B26">Gascoigne and Taylor, 2008</xref>), but can hardly assessed using conventional approaches that do not examine cellular phenotype at the functional level. It is known that cytokines, for example, in the immune system define the effector functions and lineage differentiation of immune cells. In this article, we hypothesize that protein secretion profile may represent a universal measure to identify the definitive correlate in the larger context of cellular functions to dissect cellular heterogeneity and evolutionary lineage relationship in human cancer.</p>
</abstract>
<kwd-group>
<kwd>intra-tumor heterogeneity</kwd>
<kwd>protein secretion profile</kwd>
<kwd>single-cell analysis</kwd>
<kwd>immunomonitoring</kwd>
<kwd>tumor microenvironment</kwd>
</kwd-group>
<counts>
<fig-count count="2"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="95"/>
<page-count count="8"/>
<word-count count="0"/>
</counts>
</article-meta>
</front>
<body>
<sec>
<title>THE SECRETOMIC PROFILE OF SINGLE T CELLS DEFINES A CORRELATE TO PROTECTIVE IMMUNE RESPONSES</title>
<p>To establish our hypothesis and elucidate the strategies, we would like to start with the important discoveries in the field of immunology that have enhanced our understanding of protective immune responses elicited by T cells in response to infection and vaccination. T cells demonstrate diverse and important functional activities in mediating immune response that provide protection against various infections (<xref ref-type="bibr" rid="B63">Precopio et al., 2007</xref>; <xref ref-type="bibr" rid="B69">Sallusto and Lanzavecchia, 2009</xref>; <xref ref-type="bibr" rid="B7">Bhatia et al., 2012</xref>). Upon encountering specific pathogenic antigens that generates polarizing stimulus that induces development of specific phenotype, immune cells are activated and proliferate. After their activation, immune cells differentiated into highly heterogeneous functional lineages and attain a wide variety of effector functions (<xref ref-type="bibr" rid="B58">O&#x02019;Garra, 1998</xref>; <xref ref-type="bibr" rid="B15">Darrah et al., 2007</xref>; <xref ref-type="bibr" rid="B63">Precopio et al., 2007</xref>; <xref ref-type="bibr" rid="B6">Betts et al., 2006</xref>; <xref ref-type="bibr" rid="B60">O&#x02019;Shea et al., 2008</xref>; <xref ref-type="bibr" rid="B73">Seder et al., 2008</xref>; <xref ref-type="bibr" rid="B94">Zhu and Paul, 2010</xref>; <xref ref-type="bibr" rid="B49">Ma et al., 2011</xref>). Effector T cells can regulate and prime their effector mechanisms to clear the infection by producing and secreting diverse cytokines, which play important roles in orchestrating immune responses and controlling pathogenic conditions (<xref ref-type="bibr" rid="B88">Wong and Goeddel, 1986</xref>; <xref ref-type="bibr" rid="B34">Harty et al., 2000</xref>; <xref ref-type="bibr" rid="B70">Sandberg et al., 2001</xref>). T cells develop into highly heterogeneous subpopulations, which can be classified by their differentiation states based on surface marker phenotypes and then by diverse functional profiles (<bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold>), as reflected by distinct cytokine production patterns (<xref ref-type="bibr" rid="B70">Sandberg et al., 2001</xref>; <xref ref-type="bibr" rid="B3">Appay et al., 2008</xref>; <xref ref-type="bibr" rid="B73">Seder et al., 2008</xref>; <xref ref-type="bibr" rid="B49">Ma et al., 2011</xref>; <xref ref-type="bibr" rid="B31">Han et al., 2012</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p><bold>Protein secretion profile defines phenotype and stage of CD4<sup>+</sup> T cell differentiation</bold>. It is known that human na&#x000EF;ve CD4<sup>+</sup> T cells differentiate through multiple stages including central memory and effector memory T cells to become terminally differentiated effector T cells that are monofunctional (IFNg<sup>+</sup>), less immunoprotective, and approaching the commitment to apoptosis. The triple positive polyfunctional T cells were found more potent and durable to generate effective immune protection over a prolonged time. Due to the limitation of single-cell cytokine profiling technology, it remains unclear how many effector functions are associated with single T cells. The general trend is polyfunctionality positively correlates to the effectiveness of T cell responses against infection or tissue dysfunction. There is also a diverse range of functional phenotypes defined by distinct cytokine profiles during the process of T cell activation and differentiation. The entire repertoire of heterogeneous T cells collectively defines the quality and protection of T cell-mediated immunity.</p></caption>
<graphic xlink:href="fonc-03-00010-g001.tif"/>
</fig>
<p>The critical issues in developing effective vaccines have been comprehensive characterization of these complex T cell responses (<xref ref-type="bibr" rid="B58">O&#x02019;Garra, 1998</xref>; <xref ref-type="bibr" rid="B15">Darrah et al., 2007</xref>; <xref ref-type="bibr" rid="B73">Seder et al., 2008</xref>). It is important to identify the correlation of both quality and magnitude of T cell immunity with the protective responses generated following infection or vaccination (<xref ref-type="bibr" rid="B18">De Rosa et al., 2004</xref>). Due to increasing phenotypic and functional heterogeneity of effector T cells and the plasticity of T cell differentiation, there have not been clearly defined correlates of immune protection against specific pathogens. Correlate of immune protection is a measurable predictor of an individual&#x02019;s immunity to a pathogen following infection or vaccination (<xref ref-type="bibr" rid="B94">Zhu and Paul, 2010</xref>). Defining correlates of protective T cell immunity has been particularly challenging for immunologists because the degrees of protection does not clearly match with any known T cell phenotypes (<xref ref-type="bibr" rid="B60">O&#x02019;Shea et al., 2008</xref>). Quantification and characterization of these complex and heterogeneous T cell responses have become critical to understand disease pathogenesis and develop preventive or therapeutic vaccines that elicit potent, durable, and specific immune responses (<xref ref-type="bibr" rid="B63">Precopio et al., 2007</xref>; <xref ref-type="bibr" rid="B6">Betts et al., 2006</xref>; <xref ref-type="bibr" rid="B94">Zhu and Paul, 2010</xref>).</p>
<p>The functional profiles of T<sub>H</sub>1 cells (type I helper T cells), one of major functional subsets differentiated from na&#x000EF;ve CD4 T cells, demonstrated marked heterogeneity (<xref ref-type="bibr" rid="B58">O&#x02019;Garra, 1998</xref>; <xref ref-type="bibr" rid="B70">Sandberg et al., 2001</xref>). Functional analysis of effector T cells using multi-parameter flow cytometry could delineate a number of distinct functional subsets that produce and release different combinations of cytokines within immune response elicited by bacterial infection (<xref ref-type="bibr" rid="B17">De Rosa et al., 2001</xref>; <xref ref-type="bibr" rid="B61">Perfetto et al., 2004</xref>). The study by <xref ref-type="bibr" rid="B18">De Rosa et al. (2004)</xref> measured and characterized the secretion profiles of five cytokines at the single-cell levels using multi-parameter flow cytometry, and discovered that the activated T cells express diverse cytokine profiles. Specific subsets with the ability to produce and secrete multiple cytokines simultaneously conferred more effective and durable protection and other effector functions than the subsets that secreted single cytokines (<xref ref-type="bibr" rid="B58">O&#x02019;Garra, 1998</xref>; <xref ref-type="bibr" rid="B15">Darrah et al., 2007</xref>; <xref ref-type="bibr" rid="B3">Appay et al., 2008</xref>; <xref ref-type="bibr" rid="B6">Betts et al., 2006</xref>; <xref ref-type="bibr" rid="B73">Seder et al., 2008</xref>; <xref ref-type="bibr" rid="B31">Han et al., 2012</xref>). Frequency of polyfunctional T cells that secreted three distinct cytokines simultaneously and the quality of cytokine secretion best correlated to the degree of protection (<xref ref-type="bibr" rid="B17">De Rosa et al., 2001</xref>; <xref ref-type="bibr" rid="B11">Campbell and Polyak, 2007</xref>; <xref ref-type="bibr" rid="B62">Polyak, 2011</xref>; <xref ref-type="bibr" rid="B51">Marusyk et al., 2012</xref>). The induction and maintenance of polyfunctional CD8<sup>+</sup> T lymphocytes that produce 5+ cytokines contributes to effective anti-viral immune protection (<xref ref-type="bibr" rid="B58">O&#x02019;Garra, 1998</xref>). The immune responses elicited by vaccination that generated optimal protection and resulted in a low level of pathogenic antigens are dominated by multifunctional T cells (<xref ref-type="bibr" rid="B63">Precopio et al., 2007</xref>; <xref ref-type="bibr" rid="B94">Zhu and Paul, 2010</xref>). Recently a microchip technology allows for simultaneous measurement of up to 12 cytokines to functionally profile antigen-specific CTL (cytotoxic T lymphocytes), which are the main effectors targeting intracellular pathogens (<xref ref-type="bibr" rid="B88">Wong and Goeddel, 1986</xref>; <xref ref-type="bibr" rid="B73">Seder et al., 2008</xref>; <xref ref-type="bibr" rid="B4">Attig et al., 2009</xref>). This device has enabled the detection and characterization of polyfunctional heterogeneity within a phenotypically homogeneous T cell population at single-cell levels. <xref ref-type="bibr" rid="B29">Haining (2012)</xref> and <xref ref-type="bibr" rid="B31">Han et al. (2012)</xref> used serial microengraving method to design an array of nanowells in which single T cells are isolated and stimulated to cytokine secretion, and characterized the dynamic evolution of cytokine secretion by individual T cells. Recent single immune cell studies also suggest that the ability of effector immune cells to secrete multiple cytokines simultaneously, named polyfunctionality, correlates with protective immune responses (<xref ref-type="bibr" rid="B15">Darrah et al., 2007</xref>; <xref ref-type="bibr" rid="B63">Precopio et al., 2007</xref>; <xref ref-type="bibr" rid="B6">Betts et al., 2006</xref>; <xref ref-type="bibr" rid="B60">O&#x02019;Shea et al., 2008</xref>; <xref ref-type="bibr" rid="B73">Seder et al., 2008</xref>; <xref ref-type="bibr" rid="B94">Zhu and Paul, 2010</xref>; <xref ref-type="bibr" rid="B49">Ma et al., 2011</xref>).</p>
</sec>
<sec>
<title>CELLULAR HETEROGENEITY IN HUMAN CANCER</title>
<p>Almost all solid and metastatic tumors display startling phenotypic and morphologic heterogeneity between and within tumors as well as among different cancer-afflicted individuals (<xref ref-type="bibr" rid="B11">Campbell and Polyak, 2007</xref>; <xref ref-type="bibr" rid="B62">Polyak, 2011</xref>). Tumor is comprised of highly heterogeneous subpopulation of cells that frequently exhibit substantial variability in virtually all discernible phenotypic features, especially the traits associated with tumorigenesis such as self-renewal capacity, proliferative, invasive, and metastatic potential (<xref ref-type="bibr" rid="B36">Heppner and Miller, 1983</xref>; <xref ref-type="bibr" rid="B35">Heppner, 1984</xref>; <xref ref-type="bibr" rid="B52">Marusyk and Polyak, 2009</xref>; <xref ref-type="bibr" rid="B16">Denysenko et al., 2010</xref>; <xref ref-type="bibr" rid="B62">Polyak, 2011</xref>; <xref ref-type="bibr" rid="B51">Marusyk et al., 2012</xref>). Tumors are not rigid and terminally differentiated cell mixtures, but dynamic organisms which continuously change their properties to adapt to hostile surroundings (<xref ref-type="bibr" rid="B27">Gatenby and Gillies, 2008</xref>).</p>
<p>The basic mechanisms by which tumor heterogeneity is evolved and regulated have not been clearly understood and the subject of much discussion (<xref ref-type="bibr" rid="B81">Tu et al., 2002</xref>; <xref ref-type="bibr" rid="B53">Michor and Polyak, 2010</xref>). Recently, there have been two ideas proposed to elucidate the establishment of tumor heterogeneity (<xref ref-type="bibr" rid="B33">Hanahan and Weinberg, 2011</xref>). First, the concept of cancer stem cells (CSCs) postulates that only a small population of cells, or &#x0201C;cancer stem cells,&#x0201D; are responsible for growth, maintenance, and progression of tumors (<xref ref-type="bibr" rid="B66">Reya et al., 2001</xref>; <xref ref-type="bibr" rid="B9">Bjerkvig et al., 2005</xref>; <xref ref-type="bibr" rid="B40">Ichim and Wells, 2006</xref>; <xref ref-type="bibr" rid="B52">Marusyk and Polyak, 2009</xref>; <xref ref-type="bibr" rid="B53">Michor and Polyak, 2010</xref>). Second, there is the clonal evolution model. The model states that tumor progression is driven as cancer cells over time accumulate highly diverse combinations of genetic and epigenetic alterations (<xref ref-type="bibr" rid="B50">Maley et al., 2006</xref>; <xref ref-type="bibr" rid="B52">Marusyk and Polyak, 2009</xref>; <xref ref-type="bibr" rid="B77">Sottoriva et al., 2010</xref>; <xref ref-type="bibr" rid="B62">Polyak, 2011</xref>; <xref ref-type="bibr" rid="B21">Ding et al., 2012</xref>). To design an effective and robust personalized therapy that prevents tumor relapse, it is essential to understand the causes and mechanisms of tumor heterogeneity.</p>
<p>Tumor heterogeneity also significantly complicates and impedes investigation and clinical diagnostics of cancer. Because tumor subpopulations exhibit substantial variability in sensitivities to various therapeutic interventions such as chemotherapy, radiation therapy, and immunotherapy, designing effective cancer therapies has posed a major challenge (<xref ref-type="bibr" rid="B30">H&#x000E5;kansson and Trop&#x000E9;, 1974</xref>; <xref ref-type="bibr" rid="B37">Hill et al., 1979</xref>; <xref ref-type="bibr" rid="B59">Olsson and Ebbesen, 1979</xref>; <xref ref-type="bibr" rid="B36">Heppner and Miller, 1983</xref>; <xref ref-type="bibr" rid="B72">Schilsky, 1987</xref>). One of the major reasons for failure of current cancer therapies is relapse or tumor recurrence after initial remission. Although most cancer cells initially respond to treatment that attempt to selectively kill dividing tumor cells, cancer therapy often fails because there is a small population of cells that re-establish the tumor (<xref ref-type="bibr" rid="B51">Marusyk et al., 2012</xref>). Those cells often exhibit potent tumor-initiating capabilities, have intrinsic resistance to treatment, or acquire the mutations that reduce efficacy of treatments (<xref ref-type="bibr" rid="B67">Roche-Lestienne et al., 2003</xref>; <xref ref-type="bibr" rid="B56">Mullighan et al., 2008</xref>; <xref ref-type="bibr" rid="B21">Ding et al., 2012</xref>; <xref ref-type="bibr" rid="B51">Marusyk et al., 2012</xref>). In order to stratify patients and predict the therapeutic response, it is required to identify the correlates that can define tumor cell heterogeneity, differentiation stage, lineage relationship, and interactions within a complex microenvironment in the clinical settings.</p>
</sec>
<sec>
<title>SECRETOMIC PROFILES OF SINGLE TUMOR CELLS AS A DEFINITE CORRELATE OF TUMOR HETEROGENEITY AND EVOLUTION</title>
<p>In this article, we would like to introduce a new strategy that may help to assess the extent of tumor heterogeneity, elucidate the fundamental mechanisms of how tumor heterogeneity influence tumor progression and therapeutic responses, and provide valuable insights for designing effective personalized cancer treatments. We hypothesize that a single-cell proteomic secretion profile may be identified as a definite correlate to tumor heterogeneity and evolution. A major challenge in investigating tumor heterogeneity and developing effective diagnostic and therapeutic tools has been the lack of adequate strategies to comprehensively characterize intra-tumor heterogeneity. To fully characterize genetic and phenotypic heterogeneity exhibited within a tumor, the new technologies with the ability to analyze almost every aspect of phenotype at the single-cell level must be developed (<xref ref-type="bibr" rid="B7">Bhatia et al., 2012</xref>). Analyzing secretion profiles of soluble mediators such as cytokines and growth factors at single-cell levels is particularly interesting because secretomic profiles of effector T cells can be used to characterize the magnitude and quality of T cell responses and predict a degree of immune protection (<xref ref-type="bibr" rid="B6">Betts et al., 2006</xref>; <xref ref-type="bibr" rid="B15">Darrah et al., 2007</xref>; <xref ref-type="bibr" rid="B63">Precopio et al., 2007</xref>; <xref ref-type="bibr" rid="B73">Seder et al., 2008</xref>). Like diverse mixtures of cells constituting tumors, effector T cells exhibit substantial functional and phenotypic heterogeneity, so the similar strategy will be employed to define the extent of tumor heterogeneity and predict tumorigenic potential and drug-resistance. Our preliminary result also suggests that the protein secretion profile evolves as tumor stem cells differentiate.</p>
</sec>
<sec>
<title>EMERGING MICROCHIP TECHNOLOGIES TO ANALYZE SINGLE-CELL PROTEIN SECRETION PROFILES</title>
<p>Defining molecular signatures that indicate the status of human disease or the protective immune response following interventions like vaccines has become one of the central goals in molecular medicine. Characterizing protein secretomic signatures at the single-cell resolution would improve studies of the roles of cellular heterogeneity in pathogenesis, responses to drugs, and cell differentiation (<xref ref-type="bibr" rid="B79">Tay et al., 2010</xref>; <xref ref-type="bibr" rid="B1">Agasti et al., 2012</xref>). Several new technologies that enabled quantitative single-cell proteomic analysis and characterization of functional and phenotypic heterogeneity shown by diverse cell types have recently been introduced (<xref ref-type="bibr" rid="B25">Fan et al., 2008</xref>; <xref ref-type="bibr" rid="B32">Han et al., 2011</xref>, <xref ref-type="bibr" rid="B31">2012</xref>; <xref ref-type="bibr" rid="B49">Ma et al., 2011</xref>). Many analytical tools have been developed using a wide range of materials and techniques to achieve more efficient isolation of single cells, and multiplexed detection and characterization of secreted proteins (<xref ref-type="bibr" rid="B13">Chin et al., 2004</xref>; <xref ref-type="bibr" rid="B65">Rettig and Folch, 2005</xref>; <xref ref-type="bibr" rid="B48">Love et al., 2006</xref>; <xref ref-type="bibr" rid="B93">Zhu et al., 2009</xref>; <xref ref-type="bibr" rid="B32">Han et al., 2011</xref>). Recent efforts have reported the development of a novel integrated microfluidic barcode chip platform that enables the rapid, high-content, and multiplexed detection and quantitative assessment of various biomarkers of single cells (<xref ref-type="bibr" rid="B25">Fan et al., 2008</xref>; <xref ref-type="bibr" rid="B49">Ma et al., 2011</xref>). The integrated blood barcode chip (IBBC) enabled the multiplexed and rapid measurement and quantification of a panel of plasma proteins, including the low abundance cytokines, chemokines implicated in tumor&#x02013;immune interaction, from a finger prick of human blood (<xref ref-type="bibr" rid="B25">Fan et al., 2008</xref>). By integrating microfluidic hydrodynamic principles, the platform enables rapid and effective on-chip blood separation. It employed DNA-encoded antibody library (DEAL) technique, which involves DNA-directed immobilization of antibodies, to create antibody barcode array for <italic>in situ</italic> measurement of plasma proteins (<xref ref-type="bibr" rid="B25">Fan et al., 2008</xref>). The single-cell barcode chip (SCBC) has been developed to enable comprehensive characterization of the functional and phenotypic heterogeneity of single immune cells (<xref ref-type="bibr" rid="B49">Ma et al., 2011</xref>). The SCBC module consists of a microfluidic system comprised of two polydimethylsiloxane (PDMS) layers and the microscopic slide coated with antibodies (high-density antibody barcode array). The platform has demonstrated multiplexed measurement of a large number of proteins at a single-cell level, and on-chip, rapid, and high-content assessment of protein secretion patterns (<xref ref-type="bibr" rid="B49">Ma et al., 2011</xref>). Its capability was validated by detecting multiple cytokine secretions from single macrophages and then polyfunctional profiling of tumor antigen-specific cytotoxic T cells from patients being treated by adoptive T cell transfer therapy (<xref ref-type="bibr" rid="B49">Ma et al., 2011</xref>). <xref ref-type="bibr" rid="B82">Varadarajan et al. (2012)</xref> reported the design of integrated single-cell analysis to detect and recover antigen-specific CD8<sup>+</sup> T cells based on their cytokine secretion profiles. <xref ref-type="bibr" rid="B32">Han et al. (2011)</xref> introduced an approach based on microengraving that permits quantitative measurements of the rates of cytokine secretion from single immune cells (<xref ref-type="bibr" rid="B59">Olsson and Ebbesen, 1979</xref>; <xref ref-type="bibr" rid="B73">Seder et al., 2008</xref>). The design minimizes the total number of cells to be interrogated by using a nanowell-array that could retrieve and characterize single CD8<sup>+</sup> T cells (<xref ref-type="bibr" rid="B48">Love et al., 2006</xref>; <xref ref-type="bibr" rid="B32">Han et al., 2011</xref>; <xref ref-type="bibr" rid="B82">Varadarajan et al., 2012</xref>).</p>
<p>To determine and characterize the protein secretomic profiles of single tumor cells, we have developed and optimized a novel single-cell analysis microchip. This technology will allow for rapid, high-content (more than 1000 single cells), and highly multiplexed measurement of single-cell protein secretion (>14 proteins). The module will be comprised of two major components: ultra-high-density antibody barcode chip and microfluidic single capture platform. We have successfully fabricated a PDMS chip consisting of a sub-nanoliter cell capture microchamber array (unpublished data). The PDMS-based microwell array can rapidly and efficiently capture more than 1000 single cells in a single chip, and the captured cells can be cultured and monitored inside the microchambers that provide physiologically relevant microenvironment. We also aim to employ spectral and spatial multiplexing to significantly increase the number of functional proteins (up to 45 proteins) and single cells (up to 4000 cells) to be analyzed.</p>
<p>To make our platform a more versatile research tool and effective for clinical applications, the high-content and fully automated imaging scheme to image and analyze an entire chip need to be developed. We are in a process of creating novel imaging algorithms with the capacity for detection, counting, and characterization of captured single cells in a rapid and fully automated manner. In order to comprehensively characterize the diverse cellular components, especially highly heterogeneous immune cell compartments, of tumor microenvironment, we are in a process of developing four-color fluorescence imaging to identify phenotypic surface markers of captured single cells for rapid identification of their diverse phenotypes in conjunction of single-cell protein secretion profiling. Integration of these two approaches in a single microchip might provide an effective strategy to define a correlation between distinct cell phenotypes and cytokine secretion, which may lead to improved understanding of the roles of highly heterogeneous cellular components in the tumor microenvironment in promoting tumor development.</p>
</sec>
<sec>
<title>PROTEIN SECRETOMIC PROFILING AS A TOOL TO STUDY THE CYTOKINE NETWORKS MEDIATING COMPLEX TUMOR&#x02013;MICROENVIRONMENT INTERACTION</title>
<p>Although tumor growth is typically initiated when a single cell acquires genetic abnormalities that confer its proliferative advantages and drive the malignant transformation, tumors do not develop alone, nor are they mere collections of malignant cells with unrestricted proliferation rate (<xref ref-type="bibr" rid="B86">Weiner, 2008</xref>; <xref ref-type="bibr" rid="B51">Marusyk et al., 2012</xref>; <xref ref-type="bibr" rid="B89">Wu et al., 2012a</xref>,<xref ref-type="bibr" rid="B90">b</xref>). The decades of research have led to the view that tumor cells actively interact with the tumor microenvironment composed of heterogeneous cell types, and their interplay significantly promotes tumor growth, progression, and metastasis, also drives co-evolution with tumor microenvironment (<xref ref-type="bibr" rid="B55">Mocellin et al., 2001</xref>; <xref ref-type="bibr" rid="B22">Dranoff, 2004</xref>; <xref ref-type="bibr" rid="B86">Weiner, 2008</xref>; <xref ref-type="bibr" rid="B51">Marusyk et al., 2012</xref>; <xref ref-type="bibr" rid="B89">Wu et al., 2012a</xref>,<xref ref-type="bibr" rid="B90">b</xref>). The interplay between these cells comprising the tumor microenvironment are orchestrated by the complex autocrine and paracrine signaling networks, which are mediated by the sets of small soluble proteins such as cytokines, growth factors, and chemokines (<xref ref-type="bibr" rid="B42">Irish et al., 2006</xref>; <xref ref-type="bibr" rid="B38">Huang et al., 2007</xref>; <xref ref-type="bibr" rid="B64">Raman et al., 2007</xref>; <xref ref-type="bibr" rid="B49">Ma et al., 2011</xref>). Cytokines are secreted or membrane-bound protein mediators that are involved in diverse biological functions (<xref ref-type="bibr" rid="B22">Dranoff, 2004</xref>; <xref ref-type="bibr" rid="B24">Elsawa et al., 2011</xref>). When produced in the malignant microenvironment, cytokines and tumor cells form a comprehensive network that have profound influences on tumor growth and progression by modulating the tumor microenvironment (<xref ref-type="bibr" rid="B22">Dranoff, 2004</xref>; <xref ref-type="bibr" rid="B74">Sheu et al., 2008</xref>; <xref ref-type="bibr" rid="B24">Elsawa et al., 2011</xref>). The cytokines such as the tumor-necrosis factor (TNF) are produced by immune cells, and can improve the efficacy of the T cell priming and induce adaptive anti-tumor immunity (<xref ref-type="bibr" rid="B95">Zou, 2005</xref>). On the other hand, certain cytokines have been associated with poor patient outcomes, and reported to promote tumor growth and inhibit anti-tumor immune response (<xref ref-type="bibr" rid="B87">Wojtowicz-Praga, 1997</xref>; <xref ref-type="bibr" rid="B55">Mocellin et al., 2001</xref>; <xref ref-type="bibr" rid="B64">Raman et al., 2007</xref>). For example, imbalanced production of interleukin 6 (IL-6), vascular endothelial growth factor (VEGF), or macrophage colony-stimulating factor (M-CSF) inhibit adaptive anti-tumor immunity by suppressing dendritic cell maturation and activating regulatory T cells (T<sub>reg</sub>) to aid tumor cells in evading immune-surveillance (<xref ref-type="bibr" rid="B95">Zou, 2005</xref>). Transforming growth factor beta (TGF-&#x003B2;), which is abundantly expressed in many pathological conditions, heavily influence tumor growth and maintenance as the cytokine plays important roles in forming tumor microenvironment, and facilitating angiogenesis (<xref ref-type="bibr" rid="B87">Wojtowicz-Praga, 1997</xref>; <xref ref-type="bibr" rid="B95">Zou, 2005</xref>; <xref ref-type="bibr" rid="B8">Bierie and Moses, 2006</xref>; <xref ref-type="bibr" rid="B74">Sheu et al., 2008</xref>).</p>
<p>Targeting and manipulating the cytokine balance have shown the therapeutic efficacy in previous trials (<xref ref-type="bibr" rid="B87">Wojtowicz-Praga, 1997</xref>; <xref ref-type="bibr" rid="B95">Zou, 2005</xref>; <xref ref-type="bibr" rid="B8">Bierie and Moses, 2006</xref>; <xref ref-type="bibr" rid="B74">Sheu et al., 2008</xref>; <xref ref-type="bibr" rid="B85">Weidle et al., 2010</xref>; <xref ref-type="bibr" rid="B20">Dinarello, 2011</xref>). The elucidation of the composition and function of cytokine networks in the tumor microenvironment may identify the targets for potent cancer therapy (<xref ref-type="bibr" rid="B22">Dranoff, 2004</xref>; <xref ref-type="bibr" rid="B86">Weiner, 2008</xref>). But, a systems-level study, which not just investigates the roles of individual factors, but comprehensively assesses complex signaling networks and recapitulates the dynamics of tumor microenvironment, has yet to be realized (<xref ref-type="bibr" rid="B89">Wu et al., 2012a</xref>,<xref ref-type="bibr" rid="B90">b</xref>). Despite the importance of characterizing the composition and function of cytokines during tumor development, there have been only a few studies to characterize the complex interplay among different cell types and cytokines within the microenvironment (<xref ref-type="bibr" rid="B23">Egeblad et al., 2008</xref>; <xref ref-type="bibr" rid="B75">Shi et al., 2012</xref>; <xref ref-type="bibr" rid="B84">Wang et al., 2012</xref>; <xref ref-type="bibr" rid="B89">Wu et al., 2012a</xref>,<xref ref-type="bibr" rid="B90">b</xref>). <xref ref-type="bibr" rid="B75">Shi et al. (2012)</xref> developed the SCBC for quantitative and multiplexed assay of intracellular signaling proteins in single tumor cells. The platform can provide a systematic approach to analyze the nature of perturbed signaling transduction networks in the tumor. <xref ref-type="bibr" rid="B84">Wang et al. (2012)</xref> utilized the single-cell microchip to assess how cell signaling pathways associated with tumorigenesis are influenced by cell&#x02013;cell interaction at single-cell levels. To study the tumor microenvironment <italic>in vivo</italic>, <xref ref-type="bibr" rid="B23">Egeblad et al. (2008)</xref> developed a multicolor imaging technique to analyze the dynamics and interactions of multiple stromal cell types within the tumor microenvironment via direct observation. Most recently, Yu and his colleagues performed <italic>in silico</italic> stochastic study of glioblastoma multiforme (GMB) microenvironment (<xref ref-type="bibr" rid="B89">Wu et al., 2012a</xref>,<xref ref-type="bibr" rid="B90">b</xref>). Their model reconstructed the complex cell-to-cell communications in the tumor microenvironment to assess the effects of cytokine-mediated signaling pathways in GMB development. Their model comprises 5 cell types, 15 protein mediators, and 69 signaling pathways, reflecting highly heterogeneous tumor microenvironment (<xref ref-type="bibr" rid="B90">Wu et al., 2012b</xref>). This study provides insights into the dynamics of diverse cell populations comprising the tumor microenvironment and the roles of cytokine signaling in the evolution of tumor microenvironment. The cytokine network analysis also identified several key molecules and pathways that play an important role in tumor development and consequently new therapeutic strategies can be designed to target cytokines such as IL-2 and granulocyte-macrophage colony-stimulating factor (GM-CSF), in tumor microenvironment to treat human cancer (<xref ref-type="bibr" rid="B86">Weiner, 2008</xref>; <xref ref-type="bibr" rid="B51">Marusyk et al., 2012</xref>).</p>
<p>We speculate that the analysis of single tumor cell secretion profiles from a novel clinical microchip will lead to a more complete model that predicts the dynamics of tumor evolution and aids in developing more effective personalized medicine. Each individual tumor cells display unique protein secretion profiles as they secrete unique combinations of cytokines at differing kinetics to regulate widely diverse functions during tumor progression. Significant research efforts have been made recently to develop single-cell proteomics technologies and powerful clinical tools to examine the heterogeneity of tumor microenvironment and complex cytokine-mediated signaling networks, and enable personalized therapy that targets the tumor microenvironment (<xref ref-type="bibr" rid="B42">Irish et al., 2006</xref>; <xref ref-type="bibr" rid="B91">Xu et al., 2006</xref>; <xref ref-type="bibr" rid="B38">Huang et al., 2007</xref>; <xref ref-type="bibr" rid="B49">Ma et al., 2011</xref>). Our recently developed single-cell analysis microchip will be employed to experimentally measure the magnitude, quality, and dynamics of cytokine secretion by the cells comprising tumor microenvironment. The single-cell cytokine secretion profile of the tumor will, for the first time, allow reconstruction of a systems-level and large-scale intercellular cytokine signaling network at a single-cell resolution. We also propose to develop new multicolor fluorescence imaging technologies that identify single-cell phenotypic markers and enable rapid molecular phenotyping. By integrating the imaging technologies with single-cell proteomics microchip, we expect to directly assess the behavior of the cells in tumor microenvironment and study how tumor cell cytokine secretion correlates to their phenotypic characteristics and interaction with other cells at the single-cell level. We anticipate that this approach will not only improve cancer diagnosis and stratification but also represents an informative tool to monitor the response of patients, in particular, the one treated by immunotherapy such as cytokine therapeutics, antibody therapy (anti-CTLA4 and anti-PD1), or adoptive T cell therapy that augment the function of anti-tumor immune response in tumor microenvironment to cue cancer (<xref ref-type="bibr" rid="B86">Weiner, 2008</xref>).</p>
</sec>
<sec>
<title>IDENTIFICATION OF CANCER STEM CELLS AND LINEAGE DIFFERENTIATION &#x02013; UNDERSTANDING TUMOR EVOLUTION AND HETEROGENEITY</title>
<p>The CSCs perspective suggests that a small subset of cells with stem cell properties including indefinite proliferative potential is responsible for driving tumor initiation and progression (<xref ref-type="bibr" rid="B66">Reya et al., 2001</xref>; <xref ref-type="bibr" rid="B53">Michor and Polyak, 2010</xref>). It is one of two major mechanisms that have been proposed to elucidate the origins of tumor heterogeneity. CSCs possess the high self-renewal capacity and unique ability to differentiate, which gives rise to highly heterogeneous cell types that constitute the majority of the tumors, and generates intra-tumor heterogeneity (<xref ref-type="bibr" rid="B39">Hwang-Verslues et al., 2009</xref>; <xref ref-type="bibr" rid="B52">Marusyk and Polyak, 2009</xref>; <xref ref-type="bibr" rid="B53">Michor and Polyak, 2010</xref>). The study by <xref ref-type="bibr" rid="B83">Vermeulen et al. (2008)</xref> observed that CSCs from human colon cancer possess multi-lineage differentiation capacity. Recent studies have observed that stem cells are usually preferential targets for mutations that accumulate to cause neoplastic transformation (<xref ref-type="bibr" rid="B10">Bonnet and Dick, 1997</xref>; <xref ref-type="bibr" rid="B54">Miyamoto et al., 2000</xref>; <xref ref-type="bibr" rid="B6">Betts et al., 2006</xref>). CSCs might explain why majority of conventional therapies fail due to tumor relapse after initial remission. It has been suggested that more aggressive cancers that are more likely to relapse contain more CSCs (<xref ref-type="bibr" rid="B2">Al-Hajj et al., 2004</xref>; <xref ref-type="bibr" rid="B76">Singh et al., 2004</xref>; <xref ref-type="bibr" rid="B5">Bao et al., 2006</xref>; <xref ref-type="bibr" rid="B92">Zhou et al., 2009</xref>). Many CSCs are relatively more resistant to chemotherapy due to their anti-apoptotic pathways and resistance to oxidative or DNA damage (<xref ref-type="bibr" rid="B66">Reya et al., 2001</xref>; <xref ref-type="bibr" rid="B46">Li et al., 2006</xref>; <xref ref-type="bibr" rid="B19">Diehn et al., 2009</xref>).</p>
<p>However, the definitive cellular or molecular biomarkers that identify tumor-initiating cells have not yet determined. The study by <xref ref-type="bibr" rid="B39">Hwang-Verslues et al. (2009)</xref> identified different subpopulations of cells displaying distinct tumorigenic abilities within the breast cancer cell line. The discoveries suggest that there are multiple lineages of CSCs, which can subsequently be differentiated into more diverse cells. The CSC perspective views the tumors as hierarchical organization composed of multiple lineages of differentiated cells with distinct phenotypes. The analysis of single-cell secretomic profiles shows that while every single cell exhibits distinct secretomic profiles, there are groups of single cells with comparable secretomic profiles. Based on single-cell secretomic profiles, the entire tumor cell population may be compartmentalized into multiple clusters, each of which is a group of cells that have similar or related cytokine secretion patterns. The multiple groups of single cells classified based on the secretion profile may represent distinct lineages originated from the differentiation and evolution of CSCs. Our study has shown marked change of protein secretion profiles from human brain tumor cells undergoing differentiation to mature tumor cells, suggesting the possibility of using secretomic signatures to define tumor cell differentiation and heterogeneity (<bold>Figure <xref ref-type="fig" rid="F2">2</xref></bold>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p><bold>Protein secretion profile correlates to the stage of cancer stem cell differentiation</bold>. <bold>(A)</bold> Heat map showing the protein secretion profiles measured at different times during the differentiation of human glioma stem cells <italic>in vitro</italic>. <bold>(B)</bold> Schematic depiction of the stage of glioma stem cell differentiation as identified by emergence of cytokine secretion. In our protein assay panel, glioma stem cells appear to be relatively &#x0201C;quiescent.&#x0201D; During the differentiation process, these cells begin to produce a number of functional proteins and gradually become the phenotype of mature tumor cells.</p></caption>
<graphic xlink:href="fonc-03-00010-g002.tif"/>
</fig>
<p>The mechanisms by which CSCs acquire their tumorigenic and metastatic abilities to promote tumor growth, metastasis, and resistance to therapy have not been fully understood. As normal stem cells are influenced by their &#x0201C;niche,&#x0201D; CSCs are regulated by, and in turn regulate, the extrinsic signals generated within the tumor microenvironment (<xref ref-type="bibr" rid="B43">Karnoub et al., 2007</xref>; <xref ref-type="bibr" rid="B86">Weiner, 2008</xref>; <xref ref-type="bibr" rid="B44">Korkaya et al., 2011</xref>). Heterogeneous cell types that constitute the tumor microenvironment secrete the pro-inflammatory cytokines such as IL-6 or IL-8 that increase tumorigenic potential and promote therapeutic-resistance (<xref ref-type="bibr" rid="B71">Scheller et al., 2006</xref>; <xref ref-type="bibr" rid="B45">Levina et al., 2008</xref>; <xref ref-type="bibr" rid="B47">Liu et al., 2011</xref>). In turn, tumorigenic cells also produce and secrete various factors to enhance their survival and proliferation. Recent studies have found that the capabilities of CSCs to sustain tumor growth and promote resistance to various therapies are associated with their high ability to produce soluble mediating factors such as cytokines and growth factors (<xref ref-type="bibr" rid="B80">Todaro et al., 2007</xref>; <xref ref-type="bibr" rid="B86">Weiner, 2008</xref>; <xref ref-type="bibr" rid="B41">Iliopoulos et al., 2009</xref>; <xref ref-type="bibr" rid="B78">Tang et al., 2012</xref>). The study discovered that the levels of numerous cytokines, growth factors, and chemokines were two- to threefolds higher in isolated CSC-derived tumors than parental tumor cells (<xref ref-type="bibr" rid="B45">Levina et al., 2008</xref>; <xref ref-type="bibr" rid="B78">Tang et al., 2012</xref>). The production of IL-4 by colon CSCs contributes to higher therapeutic-resistance as IL-4 promotes the expression of anti-apoptotic genes and upregulates resistance to apoptosis of CSCs (<xref ref-type="bibr" rid="B80">Todaro et al., 2007</xref>; <xref ref-type="bibr" rid="B41">Iliopoulos et al., 2009</xref>). These studies suggest that the greater ability to produce multiple cytokines has been correlated to tumorigenic and metastatic potential. From the single-cell secretion profiles, we can identify the groups of tumor cells characterized by the significant secretion of multiple, specific cytokines. These groups may elicit greater tumorigenic potentials and promote the evolution of more aggressive and invasive cancer phenotypes. Because our single-cell analysis microchip allows comprehensive characterization of phenotypes of captured single cells, including their surface phenotypes, motility, and viability, we hope to determine the correlation between specific cytokine secretion profiles of individual cells and their tumorigenic potentials and differentiation stages. The cytokine secretion profiles of single tumor cells can be used to characterize a tumor hierarchy and serve as biomarkers for tumor-initiating cells or different lineages with varying tumorigenicity and treatment-resistance.</p>
</sec>
<sec>
<title>OUTLOOK, CLINICAL APPLICATION, AND UTILITY</title>
<p>The effective targeting of cancerous cells with greater tumorigenic potential and intrinsic drug-resistance can prevent cancer relapse or persistent growth, and when combined with conventional therapy that kills the rapidly dividing cells, it can potentially cure cancer (<xref ref-type="bibr" rid="B83">Vermeulen et al., 2008</xref>; <xref ref-type="bibr" rid="B92">Zhou et al., 2009</xref>; <xref ref-type="bibr" rid="B12">Chen et al., 2010</xref>; <xref ref-type="bibr" rid="B53">Michor and Polyak, 2010</xref>). Our single cell-based cytokine secretion analysis would provide framework and new insight for designing effective therapeutic strategies by dissecting hierarchical organization of tumor microenvironment in hope to identify the specific cell subsets with higher tumorigenic and metastatic potential, and resistance to treatment. Single-cell secretomic profiling could become a new means for quantitative characterization of the extent of tumor heterogeneity, with which oncologists can diagnose the stage of cancer and likelihood of development of metastatic cancer for individual patients, leading to personalized medicine and treatments. Because distinct cytokine secretion patterns are associated with distinct differentiation lineages, secretomic profiling may aid in understanding of CSC differentiation and tumor evolution.</p>
<p>One of the major challenges in designing effective personalized cancer therapeutics and early diagnosis has been the lack of adequate technologies to comprehensively characterize inter- and intra-tumor heterogeneity in the clinical settings. Single-cell analysis of cytokine profiles are possible correlates to evaluate whether there is a high degree of intra-tumor heterogeneity of cancer phenotypes, and provide valuable insights into the origins of tumor heterogeneity, the mechanisms of the complex signaling networks that mediate the characteristics of individual tumor cells, and the extent of tumor differentiation and evolution, that has the potential to enable the development of more effective personalized medicines for human cancers.</p>
</sec>
<sec>
<title>Conflict of Interest Statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
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<ack>
<p>This study was supported by the U.S. National Cancer Institute PS-OC Center Grant U54CA143798 (subaward PI: Rong Fan) and the U.S. National Cancer Institute Howard Temin Pathway to Independence Award (NIH 4R00 CA136759-02, PI: Rong Fan). It is partly supported by a grant from the Bill &#x00026; Melinda Gates Foundation through the Grand Challenges Explorations Initiative (PI: Rong Fan). We also acknowledge the Yale Institute for Nanoscience and Quantum Engineering (YINQE) and the Yale Nanofabrication Center to allow us to use their facilities.</p>
</ack>
<ref-list>
<title>REFERENCES</title>
<ref id="B1"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Agasti</surname> <given-names>S. S.</given-names></name> <name><surname>Liong</surname> <given-names>M.</given-names></name> <name><surname>Peterson</surname> <given-names>V. M.</given-names></name> <name><surname>Lee</surname> <given-names>H.</given-names></name> <name><surname>Weissleder</surname> <given-names>R.</given-names></name></person-group> (<year>2012</year>). <article-title>Photocleavable DNA barcode &#x02013; antibody conjugates allow sensitive and multiplexed protein analysis in single cells.</article-title> <source><italic>J. Am. Chem. Soc.</italic></source> <volume>134</volume> <fpage>18499</fpage>&#x02013;<lpage>18502</lpage>.</citation></ref>
<ref id="B2"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Al-Hajj</surname> <given-names>M.</given-names></name> <name><surname>Becker</surname> <given-names>M. W.</given-names></name> <name><surname>Wicha</surname> <given-names>M.</given-names></name> <name><surname>Weissman</surname> <given-names>I.</given-names></name> <name><surname>Clarke</surname> <given-names>M. F.</given-names></name></person-group> (<year>2004</year>). <article-title>Therapeutic implications of cancer stem cells.</article-title> <source><italic>Curr. Opin. Genet. Dev.</italic></source> <volume>14</volume> <fpage>43</fpage>&#x02013;<lpage>47</lpage>.</citation></ref>
<ref id="B3"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Appay</surname> <given-names>V.</given-names></name> <name><surname>van Lier</surname> <given-names>R. A.</given-names></name> <name><surname>Sallusto</surname> <given-names>F.</given-names></name> <name><surname>Roederer</surname> <given-names>M.</given-names></name></person-group> (<year>2008</year>). <article-title>Phenotype and function of human T lymphocyte subsets: consensus and issue.</article-title> <source><italic>Cytometry A</italic></source> <volume>73</volume> <fpage>975</fpage>&#x02013;<lpage>983</lpage>.</citation></ref>
<ref id="B4"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Attig</surname> <given-names>S.</given-names></name> <name><surname>Hennenlotter</surname> <given-names>J.</given-names></name> <name><surname>Pawelec</surname> <given-names>G.</given-names></name> <name><surname>Klein</surname> <given-names>G.</given-names></name> <name><surname>Koch</surname> <given-names>S. D.</given-names></name> <name><surname>Pircher</surname> <given-names>H.</given-names></name><etal/></person-group> (<year>2009</year>). <article-title>Simultaneous infiltration of polyfunctional effector and suppressor T cells into renal cell carcinomas.</article-title> <source><italic>Cancer Res.</italic></source> <volume>69</volume> <fpage>8412</fpage>&#x02013;<lpage>8419</lpage>.</citation></ref>
<ref id="B5"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bao</surname> <given-names>S.</given-names></name> <name><surname>Wu</surname> <given-names>Q.</given-names></name> <name><surname>McLendon</surname> <given-names>R. E.</given-names></name> <name><surname>Hao</surname> <given-names>Y.</given-names></name> <name><surname>Shi</surname> <given-names>Q.</given-names></name> <name><surname>Hjelmeland</surname> <given-names>A. B.</given-names></name><etal/></person-group> (<year>2006</year>). <article-title>Glioma stem cells promote radioresistance by preferential activation of the DNA damage response.</article-title> <source><italic>Nature</italic></source> <volume>444</volume> <fpage>756</fpage>&#x02013;<lpage>760</lpage>.</citation></ref>
<ref id="B6"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Betts</surname> <given-names>M. R.</given-names></name> <name><surname>Nason</surname> <given-names>M. C.</given-names></name> <name><surname>West</surname> <given-names>S. M.</given-names></name> <name><surname>De Rosa</surname> <given-names>S. C.</given-names></name> <name><surname>Migueles</surname> <given-names>S. A.</given-names></name> <name><surname>Abraham</surname> <given-names>J.</given-names></name><etal/></person-group> (<year>2006</year>). <article-title>HIV nonprogressors preferentially maintain highly functional HIV-specific CD8+ T cells.</article-title> <source><italic>Blood</italic></source> <volume>107</volume> <fpage>4781</fpage>&#x02013;<lpage>4789</lpage>.</citation></ref>
<ref id="B7"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bhatia</surname> <given-names>S.</given-names></name> <name><surname>Frangioni</surname> <given-names>J. V.</given-names></name> <name><surname>Hoffman</surname> <given-names>R. M.</given-names></name> <name><surname>Iafrate</surname> <given-names>A. J.</given-names></name> <name><surname>Polyak</surname> <given-names>K.</given-names></name></person-group> (<year>2012</year>). <article-title>The challenges posed by cancer heterogeneity.</article-title> <source><italic>Nat. Biotechnol</italic>.</source> <volume>30</volume> <fpage>604</fpage>&#x02013;<lpage>610</lpage>.</citation></ref>
<ref id="B8"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bierie</surname> <given-names>B.</given-names></name> <name><surname>Moses</surname> <given-names>H. L.</given-names></name></person-group> (<year>2006</year>). <article-title>Tumor microenvironment: TGF-beta: the molecular Jekyll and Hyde of cancer.</article-title> <source><italic>Nat. Rev. Cancer</italic></source> <volume>6</volume> <fpage>506</fpage>&#x02013;<lpage>520</lpage>.</citation></ref>
<ref id="B9"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bjerkvig</surname> <given-names>R.</given-names></name> <name><surname>Tysnes</surname> <given-names>B. B.</given-names></name> <name><surname>Aboody</surname> <given-names>K. S.</given-names></name> <name><surname>Najbauer</surname> <given-names>J.</given-names></name> <name><surname>Terzis</surname> <given-names>A. J.</given-names></name></person-group> (<year>2005</year>). <article-title>The origin of the cancer stem cell: current controversies and new insights.</article-title> <source><italic>Nat. Rev. Cancer</italic></source> <volume>5</volume> <fpage>899</fpage>&#x02013;<lpage>904</lpage>.</citation></ref>
<ref id="B10"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bonnet</surname> <given-names>D.</given-names></name> <name><surname>Dick</surname> <given-names>J. E.</given-names></name></person-group> (<year>1997</year>). <article-title>Human acute myeloid leukemia is organized as a hierarchy that originates from a primitive hematopoietic cell.</article-title> <source><italic>Nat. Med.</italic></source> <volume>3</volume> <fpage>730</fpage>&#x02013;<lpage>737</lpage>.</citation></ref>
<ref id="B11"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Campbell</surname> <given-names>L. L.</given-names></name> <name><surname>Polyak</surname> <given-names>K.</given-names></name></person-group> (<year>2007</year>). <article-title>Breast tumor heterogeneity: cancer stem cells or clonal evolution?</article-title> <source><italic>Cell Cycle</italic></source> <volume>6</volume> <fpage>2332</fpage>&#x02013;<lpage>2338</lpage>.</citation></ref>
<ref id="B12"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chen</surname> <given-names>R.</given-names></name> <name><surname>Nishimura</surname> <given-names>M. C.</given-names></name> <name><surname>Bumbaca</surname> <given-names>S. M.</given-names></name> <name><surname>Kharbanda</surname> <given-names>S.</given-names></name> <name><surname>Forrest</surname> <given-names>W. F.</given-names></name> <name><surname>Kasman</surname> <given-names>I. M.</given-names></name><etal/></person-group> (<year>2010</year>). <article-title>A hierarchy of self-renewing tumor-initiating cell types in glioblastoma.</article-title> <source><italic>Cancer Cell</italic></source> <volume>17</volume> <fpage>362</fpage>&#x02013;<lpage>375</lpage></citation></ref>
<ref id="B13"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chin</surname> <given-names>V. I.</given-names></name> <name><surname>Taupin</surname> <given-names>P.</given-names></name> <name><surname>Sanga</surname> <given-names>S.</given-names></name> <name><surname>Scheel</surname> <given-names>J.</given-names></name> <name><surname>Gage</surname> <given-names>F. H.</given-names></name> <name><surname>Bhatia</surname> <given-names>S. N.</given-names></name></person-group> (<year>2004</year>). <article-title>Microfabricated platform for studying stem cell fates.</article-title> <source><italic>Biotechnol. Bioeng.</italic></source> <volume>88</volume> <fpage>399</fpage>&#x02013;<lpage>415</lpage></citation></ref>
<ref id="B14"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cohen</surname> <given-names>A. A.</given-names></name> <name><surname>Geva-Zatorsky</surname> <given-names>N.</given-names></name> <name><surname>Eden</surname> <given-names>E.</given-names></name> <name><surname>Frenkel-Morgenstern</surname> <given-names>M.</given-names></name> <name><surname>Issaeva</surname> <given-names>I.</given-names></name> <name><surname>Sigal</surname> <given-names>A.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title>Dynamic proteomics of individual cancer cells in response to a drug.</article-title> <source><italic>Science</italic></source> <volume>322</volume> <fpage>1511</fpage>&#x02013;<lpage>1516</lpage>.</citation></ref>
<ref id="B15"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Darrah</surname> <given-names>P. A.</given-names></name> <name><surname>Patel</surname> <given-names>D. T.</given-names></name> <name><surname>De Luca</surname> <given-names>P. M.</given-names></name> <name><surname>Lindsay</surname> <given-names>R. W.</given-names></name> <name><surname>Davey</surname> <given-names>D. F.</given-names></name> <name><surname>Flynn</surname> <given-names>B. J.</given-names></name><etal/></person-group> (<year>2007</year>). <article-title>Multifunctional Th1 cells define a correlate of vaccine-mediated protection against <italic>Leishmania major</italic>.</article-title> <source><italic>Nat. Med.</italic></source> <volume>13</volume> <fpage>843</fpage>&#x02013;<lpage>850</lpage>.</citation></ref>
<ref id="B16"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Denysenko</surname> <given-names>T.</given-names></name> <name><surname>Gennero</surname> <given-names>L.</given-names></name> <name><surname>Roos</surname> <given-names>M. A.</given-names></name> <name><surname>Melcarne</surname> <given-names>A.</given-names></name> <name><surname>Juenemann</surname> <given-names>C.</given-names></name> <name><surname>Faccani</surname> <given-names>G.</given-names></name><etal/></person-group> (<year>2010</year>). <article-title>Glioblastoma cancer stem cells: heterogeneity, microenvironment and related therapeutic strategies.</article-title> <source><italic>Cell Biochem. Funct.</italic></source> <volume>28</volume> <fpage>343</fpage>&#x02013;<lpage>351</lpage>.</citation></ref>
<ref id="B17"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>De Rosa</surname> <given-names>S. C.</given-names></name> <name><surname>Herzenberg</surname> <given-names>L. A.</given-names></name> <name><surname>Herzenberg</surname> <given-names>L. A.</given-names></name> <name><surname>Roederer</surname> <given-names>M.</given-names></name></person-group> (<year>2001</year>). <article-title>11-color, 13-parameter flow cytometry: identification of human na&#x000EF;ve T cells by phenotype, function, and T cell receptor diversity.</article-title> <source><italic>Nat. Med.</italic></source> <volume>7</volume> <fpage>245</fpage>&#x02013;<lpage>248</lpage>.</citation></ref>
<ref id="B18"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>De Rosa</surname> <given-names>S. C.</given-names></name> <name><surname>Lu</surname> <given-names>F. X.</given-names></name> <name><surname>Yu</surname> <given-names>J.</given-names></name> <name><surname>Perfetto</surname> <given-names>S. P.</given-names></name> <name><surname>Falloon</surname> <given-names>J.</given-names></name> <name><surname>Moser</surname> <given-names>S.</given-names></name><etal/></person-group> (<year>2004</year>). <article-title>Vaccination in human generates broad T cell cytokine responses.</article-title> <source><italic>J. Immunol.</italic></source> <volume>173</volume> <fpage>5372</fpage>&#x02013;<lpage>5380</lpage>.</citation></ref>
<ref id="B19"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Diehn</surname> <given-names>M.</given-names></name> <name><surname>Cho</surname> <given-names>R. W.</given-names></name> <name><surname>Lobo</surname> <given-names>N. A.</given-names></name> <name><surname>Kalisky</surname> <given-names>T.</given-names></name> <name><surname>Dorie</surname> <given-names>M. J.</given-names></name> <name><surname>Kulp</surname> <given-names>A. N.</given-names></name><etal/></person-group> (<year>2009</year>). <article-title>Association of reactive oxygen species levels and radioresistance in cancer stem cells.</article-title> <source><italic>Nature</italic></source> <volume>458</volume> <fpage>780</fpage>&#x02013;<lpage>783</lpage>.</citation></ref>
<ref id="B20"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dinarello</surname> <given-names>C. A.</given-names></name></person-group> (<year>2011</year>). <article-title>Blocking interleukin-1beta in acute and chronic autoinflammatory diseases.</article-title> <source><italic>J. Intern. Med.</italic></source> <volume>269</volume> <fpage>16</fpage>&#x02013;<lpage>28</lpage>.</citation></ref>
<ref id="B21"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ding</surname> <given-names>L.</given-names></name> <name><surname>Ley</surname> <given-names>T. J.</given-names></name> <name><surname>Larson</surname> <given-names>D. E.</given-names></name> <name><surname>Miller</surname> <given-names>C. A.</given-names></name> <name><surname>Koboldt</surname> <given-names>D. C.</given-names></name> <name><surname>Welch</surname> <given-names>J. S.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>Clonal evolution of relapsed acute myeloid leukaemia revealed by whole-genome sequencing.</article-title> <source><italic>Nature</italic></source> <volume>481</volume> <fpage>506</fpage>&#x02013;<lpage>510</lpage>.</citation></ref>
<ref id="B22"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dranoff</surname> <given-names>G.</given-names></name></person-group> (<year>2004</year>). <article-title>Cytokines in cancer pathogenesis and cancer therapy.</article-title> <source><italic>Nat. Rev. Cancer</italic></source> <volume>4</volume> <fpage>11</fpage>&#x02013;<lpage>22</lpage>.</citation></ref>
<ref id="B23"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Egeblad</surname> <given-names>M.</given-names></name> <name><surname>Ewald</surname> <given-names>A. J.</given-names></name> <name><surname>Askautrud</surname> <given-names>H. A.</given-names></name> <name><surname>Truitt</surname> <given-names>M. L.</given-names></name> <name><surname>Welm</surname> <given-names>B. E.</given-names></name> <name><surname>Bainbridge</surname> <given-names>E.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title>Visualizing stromal cell dynamics in different tumor microenvironments by spinning disk confocal microscopy.</article-title> <source><italic>Dis. Model. Mech.</italic></source> <volume>1</volume> <fpage>155</fpage>&#x02013;<lpage>167</lpage>.</citation></ref>
<ref id="B24"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Elsawa</surname> <given-names>S. F.</given-names></name> <name><surname>Novak</surname> <given-names>A. J.</given-names></name> <name><surname>Ziesmer</surname> <given-names>S. C.</given-names></name> <name><surname>Almada</surname> <given-names>L. L.</given-names></name> <name><surname>Hodge</surname> <given-names>L. S.</given-names></name> <name><surname>Grote</surname> <given-names>D. M.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>Comprehensive analysis of tumor microenvironment cytokines in Waldenstrom&#x02019;s macroglobulinemia identifies CCL5 as a novel modulator of IL-6 activity.</article-title> <source><italic>Blood</italic></source> <volume>118</volume> <fpage>5540</fpage>&#x02013;<lpage>5549</lpage>.</citation></ref>
<ref id="B25"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fan</surname> <given-names>R.</given-names></name> <name><surname>Vermesh</surname> <given-names>O.</given-names></name> <name><surname>Srivastava</surname> <given-names>A.</given-names></name> <name><surname>Yen</surname> <given-names>B. K.</given-names></name> <name><surname>Qin</surname> <given-names>L.</given-names></name> <name><surname>Ahmad</surname> <given-names>H.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title>Integrated barcode chips for rapid, multiplexed analysis of proteins in microliter quantities of blood.</article-title> <source><italic>Nat. Biotechnol.</italic></source> <volume>26</volume> <fpage>1373</fpage>&#x02013;<lpage>1378</lpage>.</citation></ref>
<ref id="B26"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gascoigne</surname> <given-names>K. E.</given-names></name> <name><surname>Taylor</surname> <given-names>S. S.</given-names></name></person-group> (<year>2008</year>). <article-title>Cancer cells display profound intra- and interline variation following prolonged exposure to antimitotic drugs.</article-title> <source><italic>Cancer Cell</italic></source> <volume>14</volume> <fpage>111</fpage>&#x02013;<lpage>122</lpage>.</citation></ref>
<ref id="B27"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gatenby</surname> <given-names>R. A.</given-names></name> <name><surname>Gillies</surname> <given-names>R. J.</given-names></name></person-group> (<year>2008</year>). <article-title>A microenvironmental model of carcinogenesis.</article-title> <source><italic>Nat. Rev. Cancer</italic></source> <volume>8</volume> <fpage>55</fpage>&#x02013;<lpage>61</lpage>.</citation></ref>
<ref id="B28"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gnecchi</surname> <given-names>M.</given-names></name> <name><surname>Zhang</surname> <given-names>Z. P.</given-names></name> <name><surname>Ni</surname> <given-names>A. G.</given-names></name> <name><surname>Dzau</surname> <given-names>V. J.</given-names></name></person-group> (<year>2008</year>). <article-title>Paracrine mechanisms in adult stem cell signaling and therapy.</article-title> <source><italic>Circ. Res.</italic></source> <volume>103</volume> <fpage>1204</fpage>&#x02013;<lpage>1219</lpage>.</citation></ref>
<ref id="B29"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Haining</surname> <given-names>W. N.</given-names></name></person-group> (<year>2012</year>). <article-title>Travels in time: assessing the functional complexity of T cells.</article-title> <source><italic>Proc. Natl. Acad. Sci. U.S.A.</italic></source> <volume>109</volume> <fpage>1359</fpage>&#x02013;<lpage>1360</lpage>.</citation></ref>
<ref id="B30"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>H&#x000E5;kansson</surname> <given-names>L</given-names></name> <name><surname>Trop&#x000E9;</surname> <given-names>C.</given-names></name></person-group> (<year>1974</year>). <article-title>On the presence within tumors of clones that differ in sensitivity to cytostatic drugs.</article-title> <source><italic>Acta Pathol. Microbiol. Scand. A</italic></source> <volume>82</volume> <fpage>35</fpage>&#x02013;<lpage>40</lpage>.</citation></ref>
<ref id="B31"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Han</surname> <given-names>Q.</given-names></name> <name><surname>Bagheri</surname> <given-names>N.</given-names></name> <name><surname>Bradshaw</surname> <given-names>E. M.</given-names></name> <name><surname>Hafler</surname> <given-names>D. A.</given-names></name> <name><surname>Lauffenburger</surname> <given-names>D. A.</given-names></name> <name><surname>Love</surname> <given-names>J. C.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>Polyfunctional responses by human T cells result from sequential release of cytokines.</article-title> <source><italic>Proc. Natl. Acad. Sci. U.S.A.</italic></source> <volume>109</volume> <fpage>1607</fpage>&#x02013;<lpage>1612</lpage>.</citation></ref>
<ref id="B32"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Han</surname> <given-names>Q.</given-names></name> <name><surname>Bradshaw</surname> <given-names>E. M.</given-names></name> <name><surname>Nilsson</surname> <given-names>B.</given-names></name> <name><surname>Hafler</surname> <given-names>D. A.</given-names></name> <name><surname>Love</surname> <given-names>J. C.</given-names></name></person-group> (<year>2011</year>). <article-title>Multidimensional analysis of the frequencies and rates of cytokine secretion from single cells by quantitative microengraving.</article-title> <source><italic>Lab Chip</italic></source> <volume>10</volume> <fpage>1391</fpage>&#x02013;<lpage>1400</lpage>.</citation></ref>
<ref id="B33"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hanahan</surname> <given-names>D.</given-names></name> <name><surname>Weinberg</surname> <given-names>R. A.</given-names></name></person-group> (<year>2011</year>). <article-title>Hallmarks of cancer: the next generation.</article-title> <source><italic>Cell</italic></source> <volume>144</volume> <fpage>646</fpage>&#x02013;<lpage>674</lpage>.</citation></ref>
<ref id="B34"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Harty</surname> <given-names>J. T.</given-names></name> <name><surname>Tvinnereim</surname> <given-names>A. R.</given-names></name> <name><surname>White</surname> <given-names>D. W.</given-names></name></person-group> (<year>2000</year>). <article-title>CD8+ T cell effector mechanisms in resistance to infection.</article-title> <source><italic>Annu. Rev. Immunol.</italic></source> <volume>18</volume> <fpage>275</fpage>&#x02013;<lpage>308</lpage>.</citation></ref>
<ref id="B35"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Heppner</surname> <given-names>G. H.</given-names></name></person-group> (<year>1984</year>). <article-title>Tumor heterogeneity.</article-title> <source><italic>Cancer Res.</italic></source> <volume>44</volume> <fpage>2259</fpage>&#x02013;<lpage>2265</lpage>.</citation></ref>
<ref id="B36"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Heppner</surname> <given-names>G. H.</given-names></name> <name><surname>Miller</surname> <given-names>B. E.</given-names></name></person-group> (<year>1983</year>). <article-title>Tumor heterogeneity: biological implications and therapeutic consequences.</article-title> <source><italic>Cancer Metastasis Rev.</italic></source> <volume>2</volume> <fpage>5</fpage>&#x02013;<lpage>23</lpage>.</citation></ref>
<ref id="B37"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hill</surname> <given-names>H. Z.</given-names></name> <name><surname>Hill</surname> <given-names>G. J.</given-names></name> <name><surname>Miller</surname> <given-names>C. F.</given-names></name> <name><surname>Kwong</surname> <given-names>F.</given-names></name> <name><surname>Purdy</surname> <given-names>J.</given-names></name></person-group> (<year>1979</year>). <article-title>Radiation and melanoma response of B16 mouse tumor cells and clonal lines to in vitro irradiation.</article-title> <source><italic>Radiat. Res.</italic></source> <volume>80</volume> <fpage>259</fpage>&#x02013;<lpage>276</lpage>.</citation></ref>
<ref id="B38"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Huang</surname> <given-names>B.</given-names></name> <name><surname>Wu</surname> <given-names>H.</given-names></name> <name><surname>Bhaya</surname> <given-names>D.</given-names></name> <name><surname>Grossman</surname> <given-names>A.</given-names></name> <name><surname>Granier</surname> <given-names>S.</given-names></name> <name><surname>Kobilka</surname> <given-names>B. K.</given-names></name><etal/></person-group> (<year>2007</year>). <article-title>Counting low-copy number proteins in a single cell.</article-title> <source><italic>Science</italic></source> <volume>315</volume> <fpage>81</fpage>&#x02013;<lpage>84</lpage>.</citation></ref>
<ref id="B39"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hwang-Verslues</surname> <given-names>W. W.</given-names></name> <name><surname>Kuo</surname> <given-names>W. H.</given-names></name> <name><surname>Chang</surname> <given-names>P. H.</given-names></name> <name><surname>Pan</surname> <given-names>C. C.</given-names></name> <name><surname>Wang</surname> <given-names>H. H.</given-names></name> <name><surname>Tsai</surname> <given-names>S. T.</given-names></name><etal/></person-group> (<year>2009</year>). <article-title>Multiple lineages of human breast cancer stem/progenitor cells identified by profiling with stem cell markers.</article-title> <source><italic>PLoS ONE</italic></source> <volume>4</volume>:<issue>e8377</issue>. <pub-id pub-id-type="doi">10.1371/journal.pone.0008377</pub-id></citation></ref>
<ref id="B40"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ichim</surname> <given-names>C. V.</given-names></name> <name><surname>Wells</surname> <given-names>R. A.</given-names></name></person-group> (<year>2006</year>). <article-title>First among equals: the cancer cell hierarchy.</article-title> <source><italic>Leuk. Lymphoma</italic></source> <volume>10</volume> <fpage>2017</fpage>&#x02013;<lpage>2027</lpage>.</citation></ref>
<ref id="B41"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Iliopoulos</surname> <given-names>D.</given-names></name> <name><surname>Hirsch</surname> <given-names>H. A.</given-names></name> <name><surname>Struhl</surname> <given-names>K.</given-names></name></person-group> (<year>2009</year>). <article-title>An epigenetic switch involving NF-&#x003BA;B, Lin28, Let-7 MicroRNA, and IL6 links inflammation to cell transformation.</article-title> <source><italic>Cell</italic></source> <volume>139</volume> <fpage>693</fpage>&#x02013;<lpage>706</lpage>.</citation></ref>
<ref id="B42"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Irish</surname> <given-names>J. M.</given-names></name> <name><surname>Kotecha</surname> <given-names>N.</given-names></name> <name><surname>Nolan</surname> <given-names>G. P.</given-names></name></person-group> (<year>2006</year>). <article-title>Mapping normal and cancer cell signaling networks: towards single-cell proteomics.</article-title> <source><italic>Nat. Rev. Cancer</italic></source> <volume>6</volume> <fpage>146</fpage>&#x02013;<lpage>155</lpage>.</citation></ref>
<ref id="B43"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Karnoub</surname> <given-names>A. E.</given-names></name> <name><surname>Dash</surname> <given-names>A. B.</given-names></name> <name><surname>Vo</surname> <given-names>A. P.</given-names></name> <name><surname>Sullivan</surname> <given-names>A.</given-names></name> <name><surname>Brooks</surname> <given-names>M. W.</given-names></name> <name><surname>Bell</surname> <given-names>G. W.</given-names></name><etal/></person-group> (<year>2007</year>). <article-title>Mesenchymal stem cells within tumour stroma promote breast cancer metastasis.</article-title> <source><italic>Nature</italic></source> <volume>449</volume> <issue>557</issue>.</citation></ref>
<ref id="B44"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Korkaya</surname> <given-names>H.</given-names></name> <name><surname>Liu</surname> <given-names>S.</given-names></name> <name><surname>Wicha</surname> <given-names>M. S.</given-names></name></person-group> (<year>2011</year>). <article-title>Regulation of cancer stem cells by cytokine networks: attacking cancer&#x02019;s inflammatory roots.</article-title> <source><italic>Clin. Cancer Res.</italic></source> <volume>17</volume> <fpage>6125</fpage>&#x02013;<lpage>6129</lpage>.</citation></ref>
<ref id="B45"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Levina</surname> <given-names>V.</given-names></name> <name><surname>Marrangoni</surname> <given-names>A. M.</given-names></name> <name><surname>DeMarco</surname> <given-names>R.</given-names></name> <name><surname>Gorelik</surname> <given-names>E.</given-names></name> <name><surname>Lokshin</surname> <given-names>A. E.</given-names></name></person-group> (<year>2008</year>). <article-title>Drug-selected human lung cancer stem cells: cytokine network, tumorigenic and metastatic properties.</article-title> <source><italic>PLoS ONE</italic></source> <volume>3</volume>:<issue>e3077</issue>. <pub-id pub-id-type="doi">10.1371/journal.pone.0003077</pub-id></citation></ref>
<ref id="B46"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Li</surname> <given-names>F.</given-names></name> <name><surname>Tiede</surname> <given-names>B.</given-names></name> <name><surname>Massagu&#x000E9;</surname> <given-names>J.</given-names></name> <name><surname>Kang</surname> <given-names>Y.</given-names></name></person-group> (<year>2006</year>). <article-title>Beyond tumorigenesis: cancer stem cells in metastasis.</article-title> <source><italic>Cell Res.</italic></source> <volume>17</volume> <fpage>3</fpage>&#x02013;<lpage>14</lpage>.</citation></ref>
<ref id="B47"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Liu</surname> <given-names>S.</given-names></name> <name><surname>Ginestier</surname> <given-names>C.</given-names></name> <name><surname>Ou</surname> <given-names>S. J.</given-names></name> <name><surname>Clouthier</surname> <given-names>S. G.</given-names></name> <name><surname>Patel</surname> <given-names>S. H.</given-names></name> <name><surname>Monville</surname> <given-names>F.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>Breast cancer stem cells are regulated by mesenchymal stem cells through cytokine networks.</article-title> <source><italic>Cancer Res.</italic></source> <volume>71</volume> <fpage>614</fpage>&#x02013;<lpage>624</lpage>.</citation></ref>
<ref id="B48"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Love</surname> <given-names>J. C.</given-names></name> <name><surname>Ronan</surname> <given-names>J. L.</given-names></name> <name><surname>Grotenbreg</surname> <given-names>G. M.</given-names></name> <name><surname>van der Veen</surname> <given-names>A. G.</given-names></name> <name><surname>Ploegh</surname> <given-names>H. L.</given-names></name></person-group> (<year>2006</year>). <article-title>A microengraving method for rapid selection of single cells producing antigen-specific antibodies.</article-title> <source><italic>Nat. Biotechnol.</italic></source> <volume>24</volume> <fpage>703</fpage>&#x02013;<lpage>707</lpage>.</citation></ref>
<ref id="B49"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ma</surname> <given-names>C.</given-names></name> <name><surname>Fan</surname> <given-names>R.</given-names></name> <name><surname>Ahmad</surname> <given-names>H.</given-names></name> <name><surname>Shi</surname> <given-names>Q.</given-names></name> <name><surname>Comin-Anduix</surname> <given-names>B.</given-names></name> <name><surname>Chodon</surname> <given-names>T.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>A clinical microchip for evaluation of single immune cell reveals high functional heterogeneity in phenotypically similar T cells.</article-title> <source><italic>Nat Med.</italic></source> <volume>17</volume> <fpage>738</fpage>&#x02013;<lpage>743</lpage>.</citation></ref>
<ref id="B50"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Maley</surname> <given-names>C. C.</given-names></name> <name><surname>Galipeau</surname> <given-names>P. C.</given-names></name> <name><surname>Finley</surname> <given-names>J. C.</given-names></name> <name><surname>Wongsurawat</surname> <given-names>V. J.</given-names></name> <name><surname>Li</surname> <given-names>X.</given-names></name> <name><surname>Sanchez</surname> <given-names>C. A.</given-names></name><etal/></person-group> (<year>2006</year>). <article-title>Genetic clonal diversity predicts progression to esophageal adenocarcinoma.</article-title> <source><italic>Nat. Genet.</italic></source> <volume>38</volume> <fpage>468</fpage>&#x02013;<lpage>473</lpage>.</citation></ref>
<ref id="B51"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Marusyk</surname> <given-names>A.</given-names></name> <name><surname>Almendro</surname> <given-names>V.</given-names></name> <name><surname>Polyak</surname> <given-names>K.</given-names></name></person-group> (<year>2012</year>). <article-title>Intra-tumour heterogeneity: a looking glass for cancer? </article-title> <source><italic>Nat. Rev. Cancer</italic></source> <volume>12</volume> <fpage>323</fpage>&#x02013;<lpage>334</lpage>.</citation></ref>
<ref id="B52"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Marusyk</surname> <given-names>A.</given-names></name> <name><surname>Polyak</surname> <given-names>K.</given-names></name></person-group> (<year>2009</year>). <article-title>Tumor heterogeneity: causes and consequences.</article-title> <source><italic>Biochim. Biophys. Acta</italic></source> <volume>1805</volume> <fpage>105</fpage>&#x02013;<lpage>117</lpage>.</citation></ref>
<ref id="B53"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Michor</surname> <given-names>F.</given-names></name> <name><surname>Polyak</surname> <given-names>K.</given-names></name></person-group> (<year>2010</year>). <article-title>The origins and implications of intratumor heterogeneity.</article-title> <source><italic>Cancer Prev. Res.</italic></source> <volume>3</volume> <fpage>1361</fpage>&#x02013;<lpage>1364</lpage>.</citation></ref>
<ref id="B54"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Miyamoto</surname> <given-names>T.</given-names></name> <name><surname>Weissman</surname> <given-names>I. L.</given-names></name> <name><surname>Akashi</surname> <given-names>K.</given-names></name></person-group> (<year>2000</year>). <article-title>AML1/ETO-expressing nonleukemic stem cells in acute myelogenous leukemia with 8; 21 chromosomal translocation.</article-title> <source><italic>Proc. Natl. Acad. Sci. U.S.A.</italic></source> <volume>97</volume> <fpage>7521</fpage>&#x02013;<lpage>7526</lpage>.</citation></ref>
<ref id="B55"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mocellin</surname> <given-names>S.</given-names></name> <name><surname>Wang</surname> <given-names>E.</given-names></name> <name><surname>Marincola</surname> <given-names>F. M.</given-names></name></person-group> (<year>2001</year>). <article-title>Cytokines and immune response in the tumor microenvironment.</article-title> <source><italic>J. Immunother.</italic></source> <volume>24</volume> <fpage>392</fpage>&#x02013;<lpage>407</lpage>.</citation></ref>
<ref id="B56"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mullighan</surname> <given-names>C. G.</given-names></name> <name><surname>Phillips</surname> <given-names>L. A.</given-names></name> <name><surname>Su</surname> <given-names>X.</given-names></name> <name><surname>Ma</surname> <given-names>J.</given-names></name> <name><surname>Miller</surname> <given-names>C. B.</given-names></name> <name><surname>Shurtleff</surname> <given-names>S. A.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title>Genomic analysis of the clonal origins of relapsed acute lymphoblastic leukemia.</article-title> <source><italic>Science</italic></source> <volume>322</volume> <fpage>1377</fpage>&#x02013;<lpage>1380</lpage>.</citation></ref>
<ref id="B57"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Niepel</surname> <given-names>M.</given-names></name> <name><surname>Spencer</surname> <given-names>S.</given-names></name> <name><surname>Sorger</surname> <given-names>P.</given-names></name></person-group> (<year>2009</year>). <article-title>Non-genetic cell-to-cell variability and the consequences for pharmacology.</article-title> <source><italic>Curr. Opin. Chem. Biol.</italic></source> <volume>13</volume> <fpage>556</fpage>&#x02013;<lpage>561</lpage>.</citation></ref>
<ref id="B58"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>O&#x02019;Garra</surname> <given-names>A.</given-names></name></person-group> (<year>1998</year>). <article-title>Cytokines induce the development of functionally heterogeneous T helper cell subsets.</article-title> <source><italic>Immunity</italic></source> <volume>8</volume> <fpage>275</fpage>&#x02013;<lpage>283</lpage>.</citation></ref>
<ref id="B59"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Olsson</surname> <given-names>L.</given-names></name> <name><surname>Ebbesen</surname> <given-names>P.</given-names></name></person-group> (<year>1979</year>). <article-title>Natural polyclonality of spontaneous AKR leukemia and its consequences for so-called specific immunotherapy.</article-title> <source><italic>J. Natl. Cancer Inst.</italic></source> <volume>62</volume> <fpage>623</fpage>&#x02013;<lpage>627</lpage>.</citation></ref>
<ref id="B60"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>O&#x02019;Shea</surname> <given-names>J. J.</given-names></name> <name><surname>Hunter</surname> <given-names>C. A.</given-names></name> <name><surname>Germain</surname> <given-names>R. N.</given-names></name></person-group> (<year>2008</year>). <article-title>T cell heterogeneity: firmly fixed, predominantly plastic or merely malleable? </article-title> <source><italic>Nat. Immunol.</italic></source> <volume>9</volume> <fpage>450</fpage>&#x02013;<lpage>453</lpage>.</citation></ref>
<ref id="B61"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Perfetto</surname> <given-names>S. P.</given-names></name> <name><surname>Chattopadhyay</surname> <given-names>P. K.</given-names></name> <name><surname>Roederer</surname> <given-names>M.</given-names></name></person-group> (<year>2004</year>). <article-title>Seventeen-colour flow cytometry: unraveling the immune system.</article-title> <source><italic>Nat. Rev. Immunol.</italic></source> <volume>4</volume> <fpage>648</fpage>&#x02013;<lpage>655</lpage>.</citation></ref>
<ref id="B62"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Polyak</surname> <given-names>K.</given-names></name></person-group> (<year>2011</year>). <article-title>Heterogeneity in breast cancer.</article-title> <source><italic>J. Clin. Invest.</italic></source> <volume>121</volume> <fpage>3786</fpage>&#x02013;<lpage>3788</lpage>.</citation></ref>
<ref id="B63"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Precopio</surname> <given-names>M. L.</given-names></name> <name><surname>Betts</surname> <given-names>M. R.</given-names></name> <name><surname>Parrino</surname> <given-names>J.</given-names></name> <name><surname>Price</surname> <given-names>D. A.</given-names></name> <name><surname>Gostick</surname> <given-names>E.</given-names></name> <name><surname>Ambrozak</surname> <given-names>D. R.</given-names></name><etal/></person-group> (<year>2007</year>). <article-title>Immunization with vaccinia virus induces polyfunctional and phenotypically distinctive CD8+ T responses.</article-title> <source><italic>J. Exp. Med.</italic></source> <volume>204</volume> <fpage>1405</fpage>&#x02013;<lpage>1416</lpage>.</citation></ref>
<ref id="B64"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Raman</surname> <given-names>D.</given-names></name> <name><surname>Baugher</surname> <given-names>P. J.</given-names></name> <name><surname>Thu</surname> <given-names>Y. M.</given-names></name> <name><surname>Richmond</surname> <given-names>A.</given-names></name></person-group> (<year>2007</year>). <article-title>Role of chemokines in tumor growth.</article-title> <source><italic>Cancer Lett.</italic></source> <volume>256</volume> <fpage>137</fpage>&#x02013;<lpage>165</lpage>.</citation></ref>
<ref id="B65"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rettig</surname> <given-names>J. R.</given-names></name> <name><surname>Folch</surname> <given-names>A.</given-names></name></person-group> (<year>2005</year>). <article-title>Large-scale single-cell trapping and imaging using microwell arrays.</article-title> <source><italic>Anal. Chem.</italic></source> <volume>77</volume> <fpage>5628</fpage>&#x02013;<lpage>5634</lpage>.</citation></ref>
<ref id="B66"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Reya</surname> <given-names>T.</given-names></name> <name><surname>Morrison</surname> <given-names>S. J.</given-names></name> <name><surname>Clarke</surname> <given-names>M. F.</given-names></name> <name><surname>Weissman</surname> <given-names>I. L.</given-names></name></person-group> (<year>2001</year>). <article-title>Stem cells, cancer, and cancer stem cells.</article-title> <source><italic>Nature</italic></source> <volume>414</volume> <fpage>105</fpage>&#x02013;<lpage>111</lpage>.</citation></ref>
<ref id="B67"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Roche-Lestienne</surname> <given-names>C.</given-names></name> <name><surname>La&#x000EF;</surname> <given-names>J. L.</given-names></name> <name><surname>Darr&#x000E9;</surname> <given-names>S.</given-names></name> <name><surname>Facon</surname> <given-names>T.</given-names></name> <name><surname>Preudhomme</surname> <given-names>C.</given-names></name></person-group> (<year>2003</year>). <article-title>A mutation conferring resistance to imatinib at the time of diagnosis of chronic myelogenous leukemia.</article-title> <source><italic>N. Engl. J. Med.</italic></source> <volume>348</volume> <fpage>2265</fpage>&#x02013;<lpage>2266</lpage>.</citation></ref>
<ref id="B68"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rothenberg</surname> <given-names>E. V.</given-names></name></person-group> (<year>2007</year>). <article-title>Cell lineage regulators in B and T cell development.</article-title> <source><italic>Nat. Immunol.</italic></source> <volume>8</volume> <fpage>441</fpage>&#x02013;<lpage>444</lpage>.</citation></ref>
<ref id="B69"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sallusto</surname> <given-names>F.</given-names></name> <name><surname>Lanzavecchia</surname> <given-names>A.</given-names></name></person-group> (<year>2009</year>). <article-title>Heterogeneity of CD4+ memory T cells: functional modules for tailored immunity.</article-title> <source><italic>Eur. J. Immunol.</italic></source> <volume>39</volume> <fpage>2076</fpage>&#x02013;<lpage>2082</lpage>.</citation></ref>
<ref id="B70"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sandberg</surname> <given-names>J. K.</given-names></name> <name><surname>Fast</surname> <given-names>N. M.</given-names></name> <name><surname>Nixon</surname> <given-names>D. F.</given-names></name></person-group> (<year>2001</year>). <article-title>Functional heterogeneity of cytokines and cytolytic effector molecules in human CD8+ T lymphocytes.</article-title> <source><italic>J. Immunol.</italic></source> <volume>167</volume> <fpage>181</fpage>&#x02013;<lpage>187</lpage>.</citation></ref>
<ref id="B71"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Scheller</surname> <given-names>J.</given-names></name> <name><surname>Ohnesorge</surname> <given-names>N.</given-names></name> <name><surname>Rose-John</surname> <given-names>S.</given-names></name></person-group> (<year>2006</year>). <article-title>Interleukin-6 trans-signalling in chronic inflammation and cancer.</article-title> <source><italic> Scand. J. Immunol.</italic></source> <volume>63</volume> <fpage>321</fpage>&#x02013;<lpage>329</lpage>.</citation></ref>
<ref id="B72"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schilsky</surname> <given-names>R. L.</given-names></name></person-group> (<year>1987</year>). <article-title>Clinical implications of tumor heterogeneity.</article-title> <source><italic>Haematol. Blood Transfus.</italic></source> <volume>31</volume> <fpage>278</fpage>&#x02013;<lpage>282</lpage>.</citation></ref>
<ref id="B73"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Seder</surname> <given-names>R. A.</given-names></name> <name><surname>Darrah</surname> <given-names>P. A.</given-names></name> <name><surname>Roederer</surname> <given-names>M.</given-names></name></person-group> (<year>2008</year>). <article-title>T cell quality in memory and protection: implications for vaccine design.</article-title> <source><italic>Nat. Rev. Immunol.</italic></source> <volume>8</volume> <fpage>247</fpage>&#x02013;<lpage>258</lpage>.</citation></ref>
<ref id="B74"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sheu</surname> <given-names>B. C.</given-names></name> <name><surname>Chang</surname> <given-names>W. C.</given-names></name> <name><surname>Cheng</surname> <given-names>C. Y.</given-names></name> <name><surname>Lin</surname> <given-names>H. H.</given-names></name> <name><surname>Chang</surname> <given-names>D. Y.</given-names></name> <name><surname>Huang</surname> <given-names>S. C.</given-names></name></person-group> (<year>2008</year>). <article-title>Cytokine regulation networks in the cancer microenvironment.</article-title> <source><italic>Front. Biosci.</italic></source> <volume>13</volume> <fpage>6255</fpage>&#x02013;<lpage>6268</lpage>.</citation></ref>
<ref id="B75"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Shi</surname> <given-names>Q.</given-names></name> <name><surname>Qin</surname> <given-names>L.</given-names></name> <name><surname>Wei</surname> <given-names>W.</given-names></name> <name><surname>Geng</surname> <given-names>F.</given-names></name> <name><surname>Fan</surname> <given-names>R.</given-names></name> <name><surname>Shin</surname> <given-names>Y. S.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>Single-cell proteomic chip for profiling intracellular signaling pathways in single tumor cells.</article-title> <source><italic>Proc. Natl. Acad. Sci.</italic></source> <volume>109</volume> <fpage>419</fpage>&#x02013;<lpage>424</lpage>.</citation></ref>
<ref id="B76"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Singh</surname> <given-names>S. K.</given-names></name> <name><surname>Clarke</surname> <given-names>I. D.</given-names></name> <name><surname>Hide</surname> <given-names>T.</given-names></name> <name><surname>Dirks</surname> <given-names>P. B.</given-names></name></person-group> (<year>2004</year>). <article-title>Cancer stem cells in nervous system tumors.</article-title> <source><italic>Oncogene</italic></source> <volume>23</volume> <fpage>7267</fpage>&#x02013;<lpage>7273</lpage>.</citation></ref>
<ref id="B77"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sottoriva</surname> <given-names>A.</given-names></name> <name><surname>Verhoeff</surname> <given-names>J. J.</given-names></name> <name><surname>Borovski</surname> <given-names>T.</given-names></name> <name><surname>McWeeney</surname> <given-names>S. K.</given-names></name> <name><surname>Naumov</surname> <given-names>L.</given-names></name> <name><surname>Medema</surname> <given-names>J. P.</given-names></name><etal/></person-group> (<year>2010</year>). <article-title>Cancer stem cell tumor model reveals invasive morphology and increased phenotypical heterogeneity.</article-title> <source><italic>Cancer Res.</italic></source> <volume>70</volume> <fpage>46</fpage>&#x02013;<lpage>56</lpage>.</citation></ref>
<ref id="B78"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tang</surname> <given-names>K. H.</given-names></name> <name><surname>Ma</surname> <given-names>S.</given-names></name> <name><surname>Lee</surname> <given-names>T. K.</given-names></name> <name><surname>Chan</surname> <given-names>Y. P.</given-names></name> <name><surname>Kwan</surname> <given-names>P. S.</given-names></name> <name><surname>Tong</surname> <given-names>C. M.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>CD133+ liver tumor-initiating cells promote tumor angiogenesis, growth, and self-renewal through neurotensin/interleukin-8/CXCL1 signaling.</article-title> <source><italic>Hepatology</italic></source> <volume>55</volume> <fpage>807</fpage>&#x02013;<lpage>820</lpage>.</citation></ref>
<ref id="B79"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tay</surname> <given-names>S.</given-names></name> <name><surname>Hughey</surname> <given-names>J. J.</given-names></name> <name><surname>Lee</surname> <given-names>T. K.</given-names></name> <name><surname>Lipniacki</surname> <given-names>T.</given-names></name> <name><surname>Quake</surname> <given-names>S. R.</given-names></name> <name><surname>Covert</surname> <given-names>M. W.</given-names></name></person-group> (<year>2010</year>). <article-title>Single-cell NF-kappaB dynamics reveal digital activation and analogue information processing.</article-title> <source><italic>Nature</italic></source> <volume>466</volume> <fpage>267</fpage>&#x02013;<lpage>271</lpage>.</citation></ref>
<ref id="B80"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Todaro</surname> <given-names>M.</given-names></name> <name><surname>Alea</surname> <given-names>M. P.</given-names></name> <name><surname>Di Stefano</surname> <given-names>A. B.</given-names></name> <name><surname>Cammareri</surname> <given-names>P.</given-names></name> <name><surname>Vermeulen</surname> <given-names>L.</given-names></name> <name><surname>Iovino</surname> <given-names>F.</given-names></name><etal/></person-group> (<year>2007</year>). <article-title>Colon cancer stem cells dictate tumor growth and resist cell death by production of interleukin-4.</article-title> <source><italic>Cell Stem Cell</italic></source> <volume>1</volume> <fpage>389</fpage>&#x02013;<lpage>402</lpage>.</citation></ref>
<ref id="B81"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tu</surname> <given-names>S. M.</given-names></name> <name><surname>Lin</surname> <given-names>S. H.</given-names></name> <name><surname>Logothetis</surname> <given-names>C. J.</given-names></name></person-group> (<year>2002</year>). <article-title>Stem-cell origin of metastasis and heterogeneity in solid tumors.</article-title> <source><italic>Lancet Oncol.</italic></source> <volume>3</volume> <fpage>508</fpage>&#x02013;<lpage>513</lpage>.</citation></ref>
<ref id="B82"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Varadarajan</surname> <given-names>N.</given-names></name> <name><surname>Kwon</surname> <given-names>D. S.</given-names></name> <name><surname>Law</surname> <given-names>K. M.</given-names></name> <name><surname>Ogunniyi</surname> <given-names>A. O.</given-names></name> <name><surname>Anahtar</surname> <given-names>M. N.</given-names></name> <name><surname>Richter</surname> <given-names>J. M.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>Rapid, efficient functional characterization and recovery of HIV-specific human CD8+ T cells using microengraving.</article-title> <source><italic>Proc. Natl. Acad. Sci. U.S.A</italic>.</source> <volume>109</volume> <fpage>3885</fpage>&#x02013;<lpage>3890</lpage>.</citation></ref>
<ref id="B83"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Vermeulen</surname> <given-names>L.</given-names></name> <name><surname>Todaro</surname> <given-names>M.</given-names></name> <name><surname>de Sousa Mello</surname> <given-names>F.</given-names></name> <name><surname>Sprick</surname> <given-names>M. R.</given-names></name> <name><surname>Kemper</surname> <given-names>K.</given-names></name> <name><surname>Alea</surname> <given-names>M. P.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title>Single-cell cloning of colon cancer stem cells reveals a multi-lineage differentiation capacity.</article-title> <source><italic>Proc. Natl. Acad. Sci. U.S.A.</italic></source> <volume>105</volume> <fpage>13427</fpage>&#x02013;<lpage>13432</lpage>.</citation></ref>
<ref id="B84"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>J.</given-names></name> <name><surname>Tham</surname> <given-names>D.</given-names></name> <name><surname>Wei</surname> <given-names>W.</given-names></name> <name><surname>Shin</surname> <given-names>Y. S.</given-names></name> <name><surname>Ma</surname> <given-names>C.</given-names></name> <name><surname>Ahmad</surname> <given-names>H.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>Quantitating cell&#x02013;cell interaction functions with applications to glioblastoma multiforme cancer cells.</article-title> <source><italic>Nano Lett.</italic></source> <volume>12</volume> <fpage>6101</fpage>&#x02013;<lpage>6106</lpage>.</citation></ref>
<ref id="B85"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Weidle</surname> <given-names>U. H.</given-names></name> <name><surname>Klostermann</surname> <given-names>S.</given-names></name> <name><surname>Eggle</surname> <given-names>D</given-names></name> <name><surname>Kr&#x000FC;ger</surname> <given-names>A.</given-names></name></person-group> (<year>2010</year>). <article-title>Interleukin 6/interleukin 6 receptor interaction and its role as a therapeutic target for treatment of cachexia and cancer.</article-title> <source><italic>Cancer Genomics Proteomics</italic></source> <volume>7</volume> <fpage>287</fpage>&#x02013;<lpage>302</lpage>.</citation></ref>
<ref id="B86"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Weiner</surname> <given-names>L. M.</given-names></name></person-group> (<year>2008</year>). <article-title>Cancer Immunotherapy: the end game begins.</article-title> <source><italic>N. Engl. J. Med.</italic></source> <volume>358</volume> <fpage>2664</fpage>&#x02013;<lpage>2665</lpage>.</citation></ref>
<ref id="B87"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wojtowicz-Praga</surname> <given-names>S.</given-names></name></person-group> (<year>1997</year>). <article-title>Reversal of tumor-induced immunosuppression: a new approach to cancer therapy.</article-title> <source><italic>J. Immunother</italic>.</source> <volume>20</volume> <fpage>165</fpage>&#x02013;<lpage>177</lpage>.</citation></ref>
<ref id="B88"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wong</surname> <given-names>G. H.</given-names></name> <name><surname>Goeddel</surname> <given-names>D. V.</given-names></name></person-group> (<year>1986</year>). <article-title>Tumour necrosis factors &#x003B1; and &#x003B2; inhibit virus replication and synergize with interferons.</article-title> <source><italic>Nature</italic></source> <volume>323</volume> <fpage>819</fpage>&#x02013;<lpage>822</lpage>.</citation></ref>
<ref id="B89"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wu</surname> <given-names>Y.</given-names></name> <name><surname>Garmire</surname> <given-names>L. X.</given-names></name> <name><surname>Fan</surname> <given-names>R.</given-names></name></person-group> (<year>2012a</year>). <article-title>Inter-cellular signaling networks reveals a mechanistic transition in tumor microenvironment.</article-title> <source><italic>Integr. Biol</italic>.</source> <volume>4</volume> <fpage>1478</fpage>&#x02013;<lpage>1486</lpage>.</citation></ref>
<ref id="B90"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wu</surname> <given-names>Y.</given-names></name> <name><surname>Lu</surname> <given-names>Y.</given-names></name> <name><surname>Chen</surname> <given-names>W.</given-names></name> <name><surname>Fu</surname> <given-names>J.</given-names></name> <name><surname>Fan</surname> <given-names>R.</given-names></name></person-group> (<year>2012b</year>). <article-title>In silico experimentation of glioma microenvironment development and anti-tumor therapy.</article-title> <source><italic>PLoS Comput. Biol</italic>.</source> <volume>8</volume>:<issue>e1002355</issue>. <pub-id pub-id-type="doi">10.1371/journal.pcbi.1002355</pub-id></citation></ref>
<ref id="B91"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Xu</surname> <given-names>B.</given-names></name> <name><surname>Du</surname> <given-names>W.</given-names></name> <name><surname>Liu</surname> <given-names>B. F.</given-names></name> <name><surname>Luo</surname> <given-names>Q.</given-names></name></person-group> (<year>2006</year>). <article-title>Single cell proteomics: challenge for current analytical science.</article-title> <source><italic>Curr. Anal. Chem.</italic></source> <volume>2</volume> <fpage>67</fpage>&#x02013;<lpage>76</lpage>.</citation></ref>
<ref id="B92"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhou</surname> <given-names>B. B.</given-names></name> <name><surname>Zhang</surname> <given-names>H.</given-names></name> <name><surname>Damelin</surname> <given-names>M.</given-names></name> <name><surname>Geles</surname> <given-names>K. G.</given-names></name> <name><surname>Grindley</surname> <given-names>J. C.</given-names></name> <name><surname>Dirks</surname> <given-names>P. B.</given-names></name></person-group> (<year>2009</year>). <article-title>Tumour-initiating cells: challenges and opportunities for anticancer drug discovery.</article-title> <source><italic>Nat. Rev. Drug Discov.</italic></source> <volume>8</volume> <fpage>806</fpage>&#x02013;<lpage>823</lpage>.</citation></ref>
<ref id="B93"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhu</surname> <given-names>H.</given-names></name> <name><surname>Stybayeva</surname> <given-names>G.</given-names></name> <name><surname>Silangcruz</surname> <given-names>J.</given-names></name> <name><surname>Yan</surname> <given-names>J.</given-names></name> <name><surname>Ramanculov</surname> <given-names>E.</given-names></name> <name><surname>Dandekar</surname> <given-names>S.</given-names></name><etal/></person-group> (<year>2009</year>). <article-title>Detecting cytokine release from single T-cells.</article-title> <source><italic>Anal. Chem.</italic></source> <volume>81</volume> <fpage>8150</fpage>&#x02013;<lpage>8156</lpage>.</citation></ref>
<ref id="B94"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhu</surname> <given-names>J.</given-names></name> <name><surname>Paul</surname> <given-names>W. E.</given-names></name></person-group> (<year>2010</year>). <article-title>Heterogeneity and plasticity of T helper cells.</article-title> <source><italic>Cell Res.</italic></source> <volume>20</volume> <fpage>4</fpage>&#x02013;<lpage>12</lpage>.</citation></ref>
<ref id="B95"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zou</surname> <given-names>W.</given-names></name></person-group> (<year>2005</year>). <article-title>Immunosuppressive networks in the tumor environment and their therapeutic relevance.</article-title> <source><italic>Nat. Rev. Cancer</italic>.</source> <volume>5</volume> <fpage>263</fpage>&#x02013;<lpage>274</lpage>.</citation></ref>
</ref-list>
</back>
</article>