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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Nutr.</journal-id>
<journal-title>Frontiers in Nutrition</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Nutr.</abbrev-journal-title>
<issn pub-type="epub">2296-861X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fnut.2024.1370951</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Nutrition</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Current insights into transcriptional role(s) for the nutraceutical <italic>Withania somnifera</italic> in inflammation and aging</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Saha</surname> <given-names>Praful</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1681540/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Ajgaonkar</surname> <given-names>Saiprasad</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
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</contrib>
<contrib contrib-type="author">
<name><surname>Maniar</surname> <given-names>Dishant</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
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</contrib>
<contrib contrib-type="author">
<name><surname>Sahare</surname> <given-names>Simran</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
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</contrib>
<contrib contrib-type="author">
<name><surname>Mehta</surname> <given-names>Dilip</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
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</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Nair</surname> <given-names>Sujit</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/666366/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/Project-administration/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
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</contrib-group>
<aff id="aff1"><sup>1</sup><institution>PhytoVeda Pvt. Ltd.</institution>, <addr-line>Mumbai</addr-line>, <country>India</country></aff>
<aff id="aff2"><sup>2</sup><institution>Viridis Biopharma Pvt. Ltd.</institution>, <addr-line>Mumbai</addr-line>, <country>India</country></aff>
<author-notes>
<fn fn-type="edited-by" id="fn0001">
<p>Edited by: Mahendra P. Singh, Deen Dayal Upadhyay Gorakhpur University, India</p>
</fn>
<fn fn-type="edited-by" id="fn0002">
<p>Reviewed by: Laxmi Rathor, University of Florida, United States</p>
<p>Simran Kauts, Lovely Professional University, India</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Sujit Nair, <email>sujit108@gmail.com</email></corresp>
</author-notes>
<pub-date pub-type="epub">
<day>03</day>
<month>05</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>11</volume>
<elocation-id>1370951</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>01</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>15</day>
<month>04</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2024 Saha, Ajgaonkar, Maniar, Sahare, Mehta and Nair.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Saha, Ajgaonkar, Maniar, Sahare, Mehta and Nair</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The health-beneficial effects of nutraceuticals in various diseases have received enhanced attention in recent years. Aging is a continuous process wherein physiological activity of an individual declines over time and is characterized by various indefinite hallmarks which contribute toward aging-related comorbidities in an individual which include many neurodegenerative diseases, cardiac problems, diabetes, bone-degeneration, and cancer. Cellular senescence is a homeostatic biological process that has an important function in driving aging. Currently, a growing body of evidence substantiates the connection between epigenetic modifications and the aging process, along with aging-related diseases. These modifications are now being recognized as promising targets for emerging therapeutic interventions. Considering that almost all the biological processes are modulated by RNAs, numerous RNA-binding proteins have been found to be linked to aging and age-related complexities. Currently, studies have shed light on the ability of the nutraceutical <italic>Withania somnifera</italic> (Ashwagandha) to influence RNA expression, stability, and processing, offering insights into its mechanisms of action. By targeting RNA-related pathways, <italic>Withania somnifera</italic> may exhibit promising effects in ameliorating age-associated molecular changes, which include modifications in gene expression and signaling networks. This review summarizes the potential role of <italic>Withania somnifera</italic> as a nutraceutical in modulating RNA-level changes associated with aging, encompassing both <italic>in vitro</italic> and <italic>in vivo</italic> studies. Taken together, the putative role(s) of <italic>Withania</italic> in modulation of key RNAs will provide insights into understanding the aging process and facilitate the development of various preventive and therapeutic strategies employing nutraceuticals for healthy aging.</p>
</abstract>
<kwd-group>
<kwd>nutraceuticals</kwd>
<kwd>aging</kwd>
<kwd>inflammation</kwd>
<kwd><italic>Withania somnifera</italic></kwd>
<kwd>Ashwagandha</kwd>
<kwd>RNA</kwd>
<kwd>noncoding RNA</kwd>
<kwd>transcription</kwd>
</kwd-group>
<counts>
<fig-count count="11"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="218"/>
<page-count count="25"/>
<word-count count="16650"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Nutrigenomics</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="sec1">
<label>1</label>
<title>Introduction</title>
<sec id="sec2">
<label>1.1</label>
<title>Aging</title>
<p>Aging is considered as a progressive deterioration of physiological activity and is characterized by various indefinite hallmarks at both cellular and molecular levels (<xref ref-type="bibr" rid="ref1">1</xref>). Apart from genomic instability and telomere attrition, ongoing research in this arena reveals various other contributing factors making this process multifaceted and complicated. Senescence occurring at both cellular and organ level leads to age-related diseases like cardiovascular conditions, Alzheimer&#x2019;s disease, cancer, and sarcopenia, often presenting as comorbidities (<xref ref-type="bibr" rid="ref2">2</xref>). With the world&#x2019;s population aged 60 and above projected to double and reach 22% by the year 2050, there is a noticeable increase in both illness and mortality rates among the population (<xref ref-type="bibr" rid="ref3">3</xref>). Escalating global aging poses a healthcare challenge due to the significant health risks accompanying aging. Therefore, it is necessary to understand the specific mechanisms which drive aging as well as aging-related complications (<xref ref-type="bibr" rid="ref4">4</xref>, <xref ref-type="bibr" rid="ref5">5</xref>). Aging and aging-related complexities are consequences of external factors (environmental) and internal factors (modulation of gene expression) (<xref ref-type="bibr" rid="ref6">6</xref>). Genetic alteration is considered as crucial in all organic processes starting with maturation of embryo to biological aging (<xref ref-type="bibr" rid="ref7">7</xref>). Transcriptomic studies including alterations in all RNA species (including mRNA, rRNA, tRNA and non-coding RNAs) inferred that genetic alterations may often lead to aging-related comorbidities namely diabetes, neurological disorders, obesity, cancer and viral infections (<xref ref-type="bibr" rid="ref6">6</xref>). Although certain illnesses or ailments might exhibit recognizable genetic or molecular markers such as transcriptomic modifications contributing to their simultaneous occurrence, numerous comorbidities stem from complex interplays among genetic, environmental, and lifestyle elements, sometimes without apparent transcriptomic changes (<xref ref-type="bibr" rid="ref8">8</xref>).</p>
</sec>
<sec id="sec3">
<label>1.2</label>
<title><italic>Withania somnifera</italic></title>
<p><italic>Withania somnifera</italic> (WS) (<xref ref-type="fig" rid="fig1">Figure 1</xref>) is a perennial, woody shrub that typically reaches a height ranging from 0.5 to 2.0 meters, belonging to family <italic>Solanaceae</italic> and is recognized by names like &#x201C;Winter cherry&#x201D; or &#x201C;Indian Ginseng&#x201D; (in English); &#x201C;Ashwagandha&#x201D; (in Sanskrit) and &#x201C;Asgandh&#x201D; (in Hindi) (<xref ref-type="bibr" rid="ref10">10</xref>). WS is established in the regions of Middle East, Africa, Sri Lanka, China, India, Canary Islands and in the warm areas of Europe and Australia where the climate is hot and dry (<xref ref-type="bibr" rid="ref11">11</xref>).</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p><italic>Withania somnifera</italic> (<xref ref-type="bibr" rid="ref9">9</xref>).</p>
</caption>
<graphic xlink:href="fnut-11-1370951-g001.tif"/>
</fig>
<p>The active biochemical components found in WS comprise of alkaloids such as isopelletierine, anaferine, cuseohygrine, anahygrine, etc., and steroidal lactones which include withanolides, withanosides (glucose conjugated), withaferin and saponins (<xref ref-type="bibr" rid="ref12">12</xref>). The chemical structures of major withanolides which include Withaferin A, Withanolide and Withanone are illustrated in <xref ref-type="fig" rid="fig2">Figures 2A</xref>&#x2013;<xref ref-type="fig" rid="fig2">C</xref> respectively. Structures of the remaining constituents has been published elsewhere (<xref ref-type="bibr" rid="ref11">11</xref>). The anti-stress agents in WS comprise sitoindosides and acylsterylglucosides and withaferin A (WA). It was reported that using WA and sitoindosides can alleviate stress in experimental models (<xref ref-type="bibr" rid="ref13">13</xref>).</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>Chemical structures of major constituents of <italic>Withania somnifera</italic> <bold>(A)</bold> Withaferin A; <bold>(B)</bold> Withanlide; <bold>(C)</bold> Withanone. Structures of the constituents were drawn using Chemdraw Version 20.1.1.125.</p>
</caption>
<graphic xlink:href="fnut-11-1370951-g002.tif"/>
</fig>
</sec>
<sec id="sec4">
<label>1.3</label>
<title>Mechanism for pharmacologic activity of <italic>Withania</italic></title>
<sec id="sec5">
<label>1.3.1</label>
<title>Immune regulation by <italic>Withania</italic></title>
<p>The immune system is an important factor in the origin and mechanisms of different diseases, contributing significantly to biomedical research advancement (<xref ref-type="bibr" rid="ref14">14</xref>). Conditions affecting the skin, gastrointestinal tract, respiratory system, joints, vital organs, and infectious illnesses are increasingly recognized as primarily influenced by immunological factors (<xref ref-type="bibr" rid="ref15">15</xref>). A wide range of studies have shown that most of the major components of WS have immunomodulatory effects in mice (<xref ref-type="bibr" rid="ref16">16</xref>) and humans (<xref ref-type="bibr" rid="ref17">17</xref>). The immunomodulatory role of WS in various inflammatory complications such as inflammation (reducing type 2 cytokines, and inflammatory markers such as TNF-&#x03B1; and IgE) has been reported (<xref ref-type="bibr" rid="ref18">18</xref>). The extract derived from WS root showcases robust hemopoietic, antioxidant, adaptogenic, and immune-stimulating properties (<xref ref-type="bibr" rid="ref19">19</xref>). WS plays a role in immunomodulation by significantly improving the immune profile by altering innate and adaptive immune systems (<xref ref-type="bibr" rid="ref20">20</xref>). In a randomized and controlled clinical trial, the immune-stimulatory effect of WS was evaluated and it was reported that WS enhanced CD4+/CD8+ and expression of CD3+/CD19+/CD45+, thus, increasing the antibody and antibody-forming cells (<xref ref-type="bibr" rid="ref20">20</xref>). The extract from WS has demonstrated a notable ability to boost cell-mediated immunity in mice (<xref ref-type="bibr" rid="ref21">21</xref>). Levels of interferon gamma (IFN-y), interleukin-2 (IL-2), and granulocyte macrophage colony-stimulating factor (GM-CSF) have been elevated in experimental mouse models when treated with WS; this indicates potential immune-enhancing and myelo-protective effects of root extracts of WS (<xref ref-type="bibr" rid="ref22">22</xref>). Furthermore, it enhances the body&#x2019;s immune system, specifically enhancing cell-mediated immunity, which is vital in defending against diseases (<xref ref-type="bibr" rid="ref23">23</xref>).</p>
</sec>
<sec id="sec6">
<label>1.3.2</label>
<title>Modulation of nitric oxide (NO) signaling by <italic>Withania</italic></title>
<p>WS amplifies the nitric oxide synthetase (NOS) activity in macrophages, consequently augmenting the microbial eradication capability of these immune cells. It has been elucidated that WS enhances the activity of nitric oxide via NOS induction (<xref ref-type="bibr" rid="ref22">22</xref>). Indeed, WS boasts a wide array of beneficial effects on the body. Additionally, it promotes a balance in reproductive and sexual function contributing to an improved reproductive health (<xref ref-type="bibr" rid="ref23">23</xref>). WS&#x2019;s adaptogenic properties make the body more resilient to the harmful effects of stress (<xref ref-type="bibr" rid="ref24">24</xref>). Furthermore, viscosalactone B and 27-O-glucoside (a derivative of WA) extracted from alcoholic leaf extract have demonstrated significant antiproliferative activity when treated with different cell lines viz. CNS cancer SF-268, breast cancer MCF-7, colon cancer HCT-116 and lung cancer NCI-H460 cell line (<xref ref-type="bibr" rid="ref11">11</xref>).</p>
</sec>
<sec id="sec7">
<label>1.3.3</label>
<title>Antioxidant activities of <italic>Withania</italic></title>
<p>Studies have shown antioxidant activities of WS concluding that it helps in prevention of glycation-induced pathogenesis as well as decreasing the levels of many oxidative stress markers indicating its potential therapeutic effects in managing healthy aging (<xref ref-type="bibr" rid="ref25 ref26 ref27">25&#x2013;27</xref>). WS&#x2019;s potent antioxidant properties have an important part in protecting cells against free radicals (<xref ref-type="bibr" rid="ref23">23</xref>). Hydroalcoholic root extracts of WS contains a diverse range of molecules namely saponins, particularly sitoinsides 7 and 8, withanolides and alkaloids which have anti-stress, anti-inflammatory and anti-oxidant properties, respectively, (<xref ref-type="bibr" rid="ref28">28</xref>). Anti-inflammatory potential of withanolides and alkaloids is reported in <italic>in vitro</italic> study using RAW 264.7 cell line. Anti-stress properties of sitoindosides 7 and 8 were demonstrated using Wistar albino rats and albino mice (<xref ref-type="bibr" rid="ref28">28</xref>). Also, studies conducted to investigate the effect of alkaloids in RAW 264.7 cells showed that the expression of iNOS and COX-2 proteins were upregulated (<xref ref-type="bibr" rid="ref29">29</xref>). In addition, alkaloids inhibited LPS-induced inflammation, indicating a putative anti-inflammatory potential of alkaloids (<xref ref-type="bibr" rid="ref29">29</xref>). Alkaloids from WS (withanamides A-I) are also reported to lower the rate of lipid peroxidation along with possessing anti-oxidant properties (<xref ref-type="bibr" rid="ref30">30</xref>).</p>
<p>WS is known for its versatility in treating a range of conditions, such as immunomodulation, rejuvenation, enhancement of cognitive function, inflammation, enhancing concentration, etc. However, a synthetic review exploring its potential role in ameliorating aging and aging-related disorders is currently lacking. In this review, we summarize mechanistic pathways modulated by WS via coding and non-coding RNAs in aging relying on information gleaned from both <italic>in vitro</italic> and <italic>in vivo</italic> studies. The RNA biomarkers regulated by WS can potentially serve as promising targets to mitigate aging-related degenerative changes and, perhaps, to some extent, reverse biological aging. This may facilitate the development of various preventive and therapeutic strategies employing WS as a nutraceutical for healthy aging.</p>
</sec>
</sec>
</sec>
<sec id="sec8">
<label>2</label>
<title>Aging</title>
<p>Aging can be described as a gradual decline over time in physiological functions essential for survival and reproductive capabilities (<xref ref-type="bibr" rid="ref31">31</xref>). The attributes associated with aging, distinct from age-related illness like cancer and heart diseases, impact every species (<xref ref-type="bibr" rid="ref31">31</xref>). In mammals, the occurrence of aging is heterogenous wherein it is accompanied by organs and tissues deterioration and their functional capabilities gradually decrease over time but not necessarily degrading into pathophysiology in healthy aging (<xref ref-type="bibr" rid="ref32">32</xref>). Consequently, aging is considered as an important factor in pathogenesis of many diseases such as dementia, osteoarthritis, cardiovascular disease, cancer, type 2 diabetes, idiopathic pulmonary fibrosis and glaucoma (<xref ref-type="bibr" rid="ref33">33</xref>). To classify aging through a biological measurement, a biomarker needs to possess specificity, systemic relevance, and practical utility (<xref ref-type="bibr" rid="ref34">34</xref>). Biomarkers of cellular aging have been categorized into ten different aspects <italic>viz.</italic> telomere shortening, genetic instability, nuclear body disorders, cell cycle arrest, epigenetic changes, mitochondrial impairment, signaling pathway rerouting, epigenetic changes, loss of proteostasis, metabolic alterations and senescence-associated secondary phenotype (<xref ref-type="bibr" rid="ref35">35</xref>, <xref ref-type="bibr" rid="ref36">36</xref>).</p>
<sec id="sec9">
<label>2.1</label>
<title>Hallmarks of aging</title>
<p>Exploring biological aging and understanding the factors related to decelerating organism function and the development of diseases is essential (<xref ref-type="bibr" rid="ref37">37</xref>). Scientists have made significant progress in unravelling the solutions through elucidation of nine different processes that contribute to the gradual decline and loss of bodily functions. These functions are also known as hallmarks of aging (<xref ref-type="bibr" rid="ref38">38</xref>). The hallmarks are categorized into 3 groups (<xref ref-type="bibr" rid="ref38">38</xref>). The first category includes primary hallmarks (causes of age-associated damage); second, antagonistic hallmarks (response to damage) and third, integrative hallmarks (response consequences and culprits of aging). Primary hallmarks include genomic uncertainty, attenuation in telomere strength, epigenetic alterations and proteostasis deprivation. Antagonistic hallmarks include deregulated nutrient sensing, affliction in mitochondrial function and senescence. Integrative hallmarks include stem cell exhaustion and alter intercellular communication (<xref ref-type="bibr" rid="ref33">33</xref>). All the above-mentioned hallmarks of aging are illustrated in <xref ref-type="fig" rid="fig3">Figure 3</xref>.</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption>
<p>Hallmarks of aging.</p>
</caption>
<graphic xlink:href="fnut-11-1370951-g003.tif"/>
</fig>
<sec id="sec10">
<label>2.1.1</label>
<title>Primary hallmarks</title>
<p>The primary causes of aging are related to various degradations, alterations and instabilities to our genomic framework and further cascading processes (<xref ref-type="bibr" rid="ref39">39</xref>). Genomic instability and telomere shortening are major causes of DNA damage, while epigenetic alterations cause post-translational modification of histones and chromatin remodeling (<xref ref-type="bibr" rid="ref40">40</xref>). Proteostasis irregulation can also have major impacts on aging due to refolding of proteins (<xref ref-type="bibr" rid="ref41">41</xref>). Telomeres, protein structures which protect the terminal regions of the DNA, go through an attrition process as a part of cell cycle, while oxidative stress, inflammation and chronic stress are also known to increase the rate of attrition leading to degradation in the protective regions making DNA more susceptible to damage (<xref ref-type="bibr" rid="ref42">42</xref>, <xref ref-type="bibr" rid="ref43">43</xref>). To add to it, genomic instability caused by both internal and external factors can alter the genetic code; this kind of DNA damage hinders the process of protein production used to damage repair and accelerates the process of aging (<xref ref-type="bibr" rid="ref40">40</xref>, <xref ref-type="bibr" rid="ref44">44</xref>). Structural changes due to epigenetic alternations degrade the cellular function and are associated with a range of age-related diseases such as cancer, diabetes, osteoporosis, neurological diseases, and increased inflammation (<xref ref-type="bibr" rid="ref45">45</xref>). Proteostasis, also known as protein homeostasis, helps maintain protein integrity to ensure proper functioning (<xref ref-type="bibr" rid="ref46">46</xref>). Dysregulation due to various internal and external factors leads to refolding which can have serious health implications such as neurodegenerative disorders, impaired muscle function and low cardiac health (<xref ref-type="bibr" rid="ref41">41</xref>).</p>
</sec>
<sec id="sec11">
<label>2.1.2</label>
<title>Antagonistic hallmarks</title>
<p>Response of the cells to nutrients is considered as nutrient sensing (<xref ref-type="bibr" rid="ref47">47</xref>). Mammalian target of Rapamycin (mTOR) is a crucial unit which incorporates nutrient sensing with different cellular processes that can lead to growth and proliferation of cells (<xref ref-type="bibr" rid="ref48">48</xref>). In growing organisms, cell proliferation and cell growth are very crucial and, therefore mTOR is activated (<xref ref-type="bibr" rid="ref49">49</xref>). mTOR is naturally decreased in aging (<xref ref-type="bibr" rid="ref50">50</xref>). Over activating this pathway can cause increased aging and increase in cancer rate, heart conditions, metabolic disorders, bone loss, neurodegenerative conditions and sarcopenia (<xref ref-type="bibr" rid="ref50">50</xref>). The mitochondrion serves as the cell&#x2019;s energy hub, where most of the body&#x2019;s energy is generated (<xref ref-type="bibr" rid="ref51">51</xref>). Aging tends to decrease the efficiency of the mitochondria due to reduced biogenesis (<xref ref-type="bibr" rid="ref51">51</xref>). Accumulation of reactive oxygen species and deficiencies (DNA polymerase &#x03B3;) are the major causes of mitochondrial dysfunctions (<xref ref-type="bibr" rid="ref52">52</xref>). Cellular senescence, or cell aging, is a process wherein the cell cycle is arrested and accompanied by characteristic phenotypic changes (<xref ref-type="bibr" rid="ref53">53</xref>). The number of senescent cells tends to rise with age, leading to an increase in inflammatory markers that contribute to the aging process (<xref ref-type="bibr" rid="ref1">1</xref>).</p>
</sec>
<sec id="sec12">
<label>2.1.3</label>
<title>Integrative hallmarks</title>
<p>Adult stem cells are necessary for continuity of tissue homeostasis and regeneration (<xref ref-type="bibr" rid="ref54">54</xref>). Consequently, the qualitative and quantitative decrease in functions of stem cells during the entirety of life are referred to as its exhaustion (<xref ref-type="bibr" rid="ref1">1</xref>). Decline in stem cell regeneration is considered as a marker of aging since the proportion of stem cells and their pace of division gradually decreases over time (<xref ref-type="bibr" rid="ref55">55</xref>). Stem cell exhaustion in adults can lead to cognitive decline, neurological degenerative diseases, delayed healing, lowered immune functions, and unfavorable heart conditions (<xref ref-type="bibr" rid="ref55">55</xref>). Cells communicate with each other based on different chemical and electrical means such as endocrine, neuroendocrine and neuronal level. Thus, neurohormonal level is deregulated in aging as inflammatory reactions increase (<xref ref-type="bibr" rid="ref56">56</xref>). One of the most prominent changes in cell signaling biomarkers is &#x201C;inflammaging&#x201D; indicating chronic inflammation development in elderly population (<xref ref-type="bibr" rid="ref57">57</xref>).</p>
</sec>
</sec>
<sec id="sec13">
<label>2.2</label>
<title>Cellular senescence</title>
<p>Of the nine hallmarks of aging, cellular senescence has been implicated as a major cause of aging and age-related diseases (<xref ref-type="bibr" rid="ref33">33</xref>). The phenomenon of senescence was initially elucidated in 1961 by Hayflick and Moorhead using human diploid fibroblasts cells who reported that the cells undergo at least 40&#x2013;60 divisions before arresting their cell cycle (<xref ref-type="bibr" rid="ref58">58</xref>). The process of senescence is characterized by cell-cycle arrest in the G<sub>1</sub> or probably G<sub>2</sub> phase, which prevents the proliferation of damaged cells (<xref ref-type="bibr" rid="ref59">59</xref>). Cellular senescence can also occur at embryonic development and is activated by cellular impairment including the processes of DNA damage response (DDR), telomere attrition or dysfunction, activation of various oncogenes, or loss of ability of tumor suppressor genes, epigenetic changes and organelle damage (<xref ref-type="bibr" rid="ref60">60</xref>). The major risk for cellular senescence is DNA damage which initiates the canonical p53-p21 pathway and DNA damage response (<xref ref-type="bibr" rid="ref61">61</xref>). p21 downregulates CDK complex inhibiting the formation of DREAM complex suppressing genes involved in cell cycle through binding with their homology regions (<xref ref-type="bibr" rid="ref62">62</xref>).</p>
<p>A permanent shunt of cell cycle confirms that cells altered due to genomic changes do not pass on their genomes (<xref ref-type="bibr" rid="ref63">63</xref>). The process is initiated by the activation of p16<sup>/</sup>Rb and/or p53/p21 pathways (<xref ref-type="bibr" rid="ref64">64</xref>). An analysis of several genome wide association studies inferred that <italic>INK4a/ARF</italic> locus, also known as genomic locus, contributes to a plethora of aging-related pathologies (<xref ref-type="bibr" rid="ref65">65</xref>). p15<sup>INK4b</sup> and p16<sup>INK4a</sup> inhibit CDK4/6 affecting the functionality of cell cycle. In contrast, activation of ARF leads to inhibition of murine double minute 2 (MDM2) which leads to crosstalk between p53/p21<sup>CIPI</sup> pathways (<xref ref-type="bibr" rid="ref66">66</xref>). p16<sup>INK4a</sup> is accumulated during aging and is recognized as a biomarker in aging and aging-related diseases (<xref ref-type="bibr" rid="ref33">33</xref>).</p>
</sec>
<sec id="sec14">
<label>2.3</label>
<title>Oxidative stress</title>
<p>Oxidative stress occurs when the ROS production and cellular defense mechanisms are imbalanced (<xref ref-type="bibr" rid="ref67">67</xref>). ROS are essential for maintenance and growth of cells as they play important roles in cellular defense mechanisms (<xref ref-type="bibr" rid="ref68">68</xref>). Free radical formation is a crucial step for the cell protection and cell survival within its physiological limits (<xref ref-type="bibr" rid="ref69">69</xref>). This process escalates with age and affects the normal functioning of various tissues in the body (<xref ref-type="bibr" rid="ref70">70</xref>). Furthermore, various prolonged diseases related to aging such as cardiovascular disease, diabetes, pulmonary, bones and muscle related disorders are linked to oxidative stress (<xref ref-type="bibr" rid="ref71">71</xref>). Oxidative stress is induced when there is an elevation in ROS production and reduction in ROS neutralization (<xref ref-type="bibr" rid="ref67">67</xref>). Since the ROS are produced rapidly, their toxic levels are attained and lead to higher Ca<sup>2+</sup> stimulation in TCA cycle, this leads to the increased activity of ETC and NADPH production (<xref ref-type="bibr" rid="ref72">72</xref>). Autooxidation with high production of glucose guides to the alteration of metabolic activity that leads to inhibition of enzymes glutathione peroxidase (GPx) and catalase (CAT) while ROS causes DNA damage (<xref ref-type="bibr" rid="ref73">73</xref>). In aging, there is deposition of ROS-induced damage which leads to age-associated functional losses (<xref ref-type="bibr" rid="ref74">74</xref>). Aging and associated disorders which are induced by oxidative stress cause degradation in soft tissues and disruption of homeostasis (<xref ref-type="bibr" rid="ref75">75</xref>). Moreover, oxidative stress activates irregular mitochondrial signaling leading to alteration of homeostasis of mitochondria and causes age-dependent cellular damage (<xref ref-type="bibr" rid="ref75">75</xref>).</p>
</sec>
<sec id="sec15">
<label>2.4</label>
<title>Metabolic stress as a marker in aging</title>
<p>Diseases related to abnormal functions in metabolism have been on the rise because of various lifestyle changes that include caloric surplus diet, smoking, etc. (<xref ref-type="bibr" rid="ref76">76</xref>). This leads to metabolic symptoms such as obesity, diabetes, insulin resistance and hypertension. These diseases are also known as metabolic syndrome (<xref ref-type="bibr" rid="ref77">77</xref>). Even after many clinical advancements to improve the conditions for cardiovascular disease, patients who are suffering from metabolic syndrome have low life expectancy as well as suffer from premature aging (<xref ref-type="bibr" rid="ref78">78</xref>). Metabolic disorders are linked to an early onset of cardiovascular aging risk, which encompasses cardiac remodeling, improper functioning of cardiac pump, endothelial damage, and calcification, consequently elevating the susceptibility to heart failure (<xref ref-type="bibr" rid="ref79">79</xref>). Alterations in metabolic homeostasis is one of the major cause of premature aging (<xref ref-type="bibr" rid="ref80">80</xref>). Autophagy is referred to as a &#x201C;process of degradation of injured cell organelles and proteins&#x201D; and it lowers with aging. Inhibition of this process leads to shortening of life-expectancy rate and resulting in premature aging (<xref ref-type="bibr" rid="ref81">81</xref>). The process of autophagy tends to be actively involved in pathogenesis of disease such as cardiac arrest, CHD, atherosclerosis (<xref ref-type="bibr" rid="ref82">82</xref>). Metabolic stress-induced impairment in the autophagic clearance mechanism has a role in shifting the cellular, tissue, or organ health from a normal state to a pre-senescent condition marked by visible pathology (<xref ref-type="bibr" rid="ref80">80</xref>). Multiple advantages have been postulated in extending lifespan and mitigating age-related issues, both in clinical practice and experimental research (<xref ref-type="bibr" rid="ref78">78</xref>). Dysregulation of metabolic and physiological stress have shown to affect telomere length and maintenance which leads to aging (<xref ref-type="bibr" rid="ref83">83</xref>). Additionally, mTOR signaling is a major regulator of cell metabolism and autophagy by consistently inducing autophagy in cells (<xref ref-type="bibr" rid="ref84">84</xref>). mTOR signaling is prone to alterations made in nutritive environments such as IGF-1, fatty and amino acids (<xref ref-type="bibr" rid="ref49">49</xref>). mTOR regulation and aging are very closely related as the level of mTOR elevated in hematopoietic stem cells in elderly population suggesting that modulation in mTOR pathway can serve as a potential therapeutic marker in aging (<xref ref-type="bibr" rid="ref85">85</xref>).</p>
</sec>
</sec>
<sec id="sec16">
<label>3</label>
<title>Biosynthesis and metabolism of <italic>Withania</italic> compounds</title>
<p>There has been extensive use of WS for its several medicinal properties which are responsible for many beneficial pharmacological activities (<xref ref-type="bibr" rid="ref86">86</xref>). Withanolides are crucial secondary metabolites demonstrating pharmacological activity (<xref ref-type="bibr" rid="ref87">87</xref>). To date, multiple withanolides, including prominent ones like withanolides, withaferin A (WA) and withanone are extracted from WS (<xref ref-type="bibr" rid="ref88">88</xref>). Therefore, due to the growing demand of WS in the medicinal industry, it led to the search of a wide range of approaches for the mass production of roots of WS (<xref ref-type="bibr" rid="ref89">89</xref>). Activation of metabolic pathway leads to the WS constituents in various parts. The major withanolides are produced via mevalonate (MVA) and methylerythritol 4-PO<sub>4</sub> (MEP) pathways occurring in plastids and cytosol, respectively, (<xref ref-type="bibr" rid="ref90">90</xref>). Chemically, withanolides are also known as triterpenoids which are 30-carbon compounds (<xref ref-type="bibr" rid="ref91">91</xref>). Triterpenoids generally are biosynthesized through a metabolic pathway. This require isoprene units such as isopentenyl pyrophosphate (IPP) and dimethyl allyl pyrophosphate (DMAPP) as precursors (<xref ref-type="bibr" rid="ref91">91</xref>). The MVA pathway engages seven enzymes to create precursor molecules IPP and DMAPP for terpenoid biosynthesis (<xref ref-type="bibr" rid="ref92">92</xref>). Initially, it starts by condensing two acetyl-CoA molecules into acetoacetyl (AcAc)-CoA, facilitated by the enzyme AcAc-CoA thiolase to form 3-hydroxy-3-methylglytaryl-coenzyme A (HMG-CoA). Further, HMG-CoA reductase catalyzes a double reduction reaction which results in mevalonate biosynthesis from HMG-CoA that converts into IPP. IPP further converts to DMAPP. IPP from MEP pathway is converted to farnesyl pyrophosphate (FPP) (<xref ref-type="bibr" rid="ref90">90</xref>). Squalene biosynthesis occurs by the FPP condensation in an NADPH-dependent manner. The delta-lactonization of 24-methylenecholesterol synthesis is an important step leading to withanolide biosynthesis (<xref ref-type="bibr" rid="ref90">90</xref>). The biosynthetic pathway of withanolides including MVA and MEP pathway is illustrated in <xref ref-type="fig" rid="fig4">Figure 4</xref>.</p>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption>
<p>Biosynthesis of Withanolides from plant-derived sources.</p>
</caption>
<graphic xlink:href="fnut-11-1370951-g004.tif"/>
</fig>
<p>Senthil et al. (<xref ref-type="bibr" rid="ref93">93</xref>) carried out transcriptomic analysis of <italic>WS</italic> leaf and root tissues cultured <italic>in vitro</italic>. This provided insights on gene expression involved in biosynthesis and accumulation of essential withanolides (<xref ref-type="bibr" rid="ref93">93</xref>). Various critical genes, such as hydroxymethylglutaryl reductase (HMGR), farnesyl pyrophosphate synthase (FPPS), glucosyltransferases (GT), cycloartenol synthase (CAS), squalene (SE) have specific roles in the process (<xref ref-type="bibr" rid="ref94">94</xref>). For instance, HMGR facilitates HMG-CoA to mevalonate conversion, while FPPS led to the production of FPP, a fundamental element in numerous pathways (<xref ref-type="bibr" rid="ref95">95</xref>). Phytosterols and triterpenoids are produced with the help of SE and CAS genes. Furthermore, GT facilitates the glycosylation of various natural compounds, aiding in the detoxification process (<xref ref-type="bibr" rid="ref96">96</xref>). FPPS, another crucial enzyme, starts the biosynthesis of triterpenoid precursors to support withanolide production within the isoprenoid pathway (<xref ref-type="bibr" rid="ref97">97</xref>). Expression of these genes involved in withanolide production displayed varying patterns along with essential withanolides like withanolide A and withaferin A. CAS, following the production of 2,3-epoxy squalene, induces the following step which leads to 24-methylene cholesterol synthesis, a precursor vital for withanolide synthesis (<xref ref-type="bibr" rid="ref93">93</xref>). Also, a study (<xref ref-type="bibr" rid="ref98">98</xref>) was conducted where virus induced gene silencing technique was used to assess the genes involved in withanolides&#x2019; biosynthesis. Through quantitative RT-PCR studies, it was revealed that biosynthesis of terpenoids is modulated by complex coordination of various enzymes and flux distribution of several metabolic channels (<xref ref-type="bibr" rid="ref98">98</xref>).</p>
<p>Soni et al. (<xref ref-type="bibr" rid="ref99">99</xref>) evaluated the function of endophytic <italic>Bacopa monnieri</italic> after isolation and identification of the fungal endophytes with plant growth promoting potential. By isolating endophytes under <italic>in-vitro</italic> conditions, secondary metabolites were produced. The study inferred that <italic>B. monnieri</italic> helps in withanolide production and biosynthesis in a cost-effective manner (<xref ref-type="bibr" rid="ref99">99</xref>).</p>
<p>Gupta et al. (<xref ref-type="bibr" rid="ref100">100</xref>) performed transcriptomic analyses for WS root and leaf to synthesize Withanolide A and Withaferin A, respectively, to further facilitate the understanding of Withanolide synthesis pathway. Analyses of the data shed light on the genes participating in synthesis of withanolide (<xref ref-type="bibr" rid="ref100">100</xref>). Also, the investigation pinpointed genes such as CYP450, glycosyltransferase (GT), and methyltransferase (MT) that showed distinctive occurrence or expression in roots and leaves, potentially contributing to tissue-specific withanolide synthesis. The resulting sequencing for WS highlighted insights into the biosynthetic pathways of secondary plant products that are specific to tissues. Furthermore, it presents opportunities for devising strategies to enhance withanolide biosynthesis through biotechnological interventions (<xref ref-type="bibr" rid="ref100">100</xref>).</p>
</sec>
<sec id="sec17">
<label>4</label>
<title>Role of <italic>Withania somnifera</italic> in modulating RNAs in aging and inflammation</title>
<sec id="sec18">
<label>4.1</label>
<title>Non-coding RNAs in aging and inflammation</title>
<p>There is a scarcity of literature on non-coding RNA in aging and inflammation. MicroRNAs (miRNAs) play major role(s) in progression of many medical complications, including osteoarthritis (OA) (<xref ref-type="bibr" rid="ref101">101</xref>). OA is traditional age-related disorder as the chances of OA increases with age due to sarcopenia and structural loss of bones in increasing age (<xref ref-type="bibr" rid="ref102">102</xref>). Destruction of articular cartilage, limitation of movement, bone inflammation and synovitis are characteristics of OA (<xref ref-type="bibr" rid="ref103">103</xref>). miR-25 modulates the expression of inflammatory markers and is downregulated in OA conditions (<xref ref-type="bibr" rid="ref104">104</xref>). To check the role of Withaferin A in modulation of miR-25, a study was conducted (<xref ref-type="bibr" rid="ref105">105</xref>) to investigate the role of Withaferin A in osteoarthritis using rabbit articular chondrocytes. It was reported that treatment of Withaferin A increased miR-25 expression by inducing the expression of cyclooxygenase 2 (COX2) providing a therapeutic approach in the treatment of OA (<xref ref-type="bibr" rid="ref105">105</xref>). Further, miR-181c-5p is associated with the promotion of NF-&#x03BA;B mediated inflammation by downregulating protein tyrosine phosphatase nonreceptor type 4 (PTPN4) and therefore miR-181c-5p level may serve as a potential therapeutic factor in inflammation (<xref ref-type="bibr" rid="ref106">106</xref>). However, Shuaib et al. elucidated the impact of WS on miR-181c-5p, and it was inferred that Withaferin A potentially upregulated the expression of miR-181c-5p (<xref ref-type="bibr" rid="ref107">107</xref>).</p>
</sec>
<sec id="sec19">
<label>4.2</label>
<title>Messenger RNAs involved in inflammation and aging-associated diseases</title>
<sec id="sec20">
<label>4.2.1</label>
<title>mRNAs involved in inflammation</title>
<p>One of the prevalent features related to aging is inflammation and, in the absence of any kind of open infection, this chronic inflammation is referred to as &#x201C;inflammaging&#x201D; (<xref ref-type="bibr" rid="ref108">108</xref>). It poses a major risk factor in major health degradation and mortality in elderly populations (<xref ref-type="bibr" rid="ref109">109</xref>). Human keratinocytes have a crucial role in inflammation by mediating tumor necrosis factor (TNF)-&#x03B1; and interleukins (IL) (<xref ref-type="bibr" rid="ref110">110</xref>). Many skin diseases that are related to inflammation such as psoriasis, atopic dermatitis and allergic contact dermatitis are highly associated with keratinocytes and cytokines (<xref ref-type="bibr" rid="ref111">111</xref>). Therefore, to study the anti-inflammatory effects of WS in modulation of these cytokines, Sikandan et al. (<xref ref-type="bibr" rid="ref112">112</xref>) demonstrated the effect of Ashwagandha water extract (ASH-WEX) in human keratinocyte (HaCaT) cell line and 6-week-old male C57BL/6&#x2009;J mice. RNA was isolated after the fifth day of treatment from mice skin and RT-qPCR was performed to check the transcriptional regulation of inflammatory cytokines in both HaCaT cells and C57BL/6&#x2009;J mice. It was inferred that ASH-WEX inhibited TNF-&#x03B1;, and interleukins (IL-6, -8, -1&#x03B2;, and -12) while the expression of TGF-&#x03B2;1 was reduced in a dose-proportional manner (<xref ref-type="bibr" rid="ref112">112</xref>). Also, mRNA expression studies performed in mice showed that ASH-WEX treatment inhibited TNF- &#x03B1; expression while it overexpressed TGF-&#x03B2; at mRNA level (<xref ref-type="bibr" rid="ref112">112</xref>). Furthermore, a study was conducted (<xref ref-type="bibr" rid="ref113">113</xref>) to demonstrate the beneficial effects of dry leaf extract of WS on anxiety and neuroinflammation which results from obesity. Using mRNA expression analysis by qRT-PCR, it was observed that WS led to inhibition of IKK&#x03B1;/&#x03B2; which further suppressed NF-&#x03BA;B signaling, and reduced the expression of iNOS, GFAP, IL-1&#x03B2;, TNF-&#x03B1;, PPAR&#x03B3; and MCP-1. Also, WS treatment led to upregulation of Bcl-xL and downregulation of Bad mRNA which further inhibited high fat diet-induced apoptosis in rats (<xref ref-type="bibr" rid="ref113">113</xref>).</p>
<p>Signaling pathways including modulation of RNA by <italic>Withania somnifera</italic> in inflammation are summarized in <xref ref-type="fig" rid="fig5">Figure 5</xref>.</p>
<fig position="float" id="fig5">
<label>Figure 5</label>
<caption>
<p>Signaling pathways implicating <italic>Withania somnifera</italic> in modulation of RNAs in inflammation. (1) TNF&#x03B1;, a tumor suppressive cytokine, binds to TNFR1 releasing SODD and activating TRADD complex which further activates NIK and TAK/TAB1/2/3 complex resulting in NF-&#x03BA;B and MAPK signaling pathway activation that transcribes TNF&#x03B1; mRNA via NF-&#x03BA;B, CREB, C/EBP&#x03B2; and AP-1 signaling. (2) TNF&#x03B1; is inhibited by <italic>Withania somnifera</italic> at transcriptional level which further inhibits inflammation. In addition, IL-6 binds to IL-6R activating JAK/STAT signaling pathway which transcribes IL-6 mRNA. <italic>Withania somnifera</italic> inhibits IL-6 at transcriptional level which, in turn, inhibits JAK/STAT signaling. Moreover, TGF&#x03B2;1, anti-inflammatory cytokine binds to TGF&#x03B2;R1 initiating SMAD signaling leading to transcription of TGF&#x03B2;1 mRNA. <italic>Withania somnifera</italic> induces the expression of TGF&#x03B2;1 resulting in attenuation of inflammation.</p>
</caption>
<graphic xlink:href="fnut-11-1370951-g005.tif"/>
</fig>
</sec>
<sec id="sec21">
<label>4.2.2</label>
<title>mRNAs involved in neurodegeneration</title>
<p>A key neurodegeneration hallmark includes accumulating advanced glycation endproducts (AGE) in the brain (<xref ref-type="bibr" rid="ref114">114</xref>). Similarly, receptors for advanced glycation endproducts (RAGE) are overexpressed in brain (<xref ref-type="bibr" rid="ref115">115</xref>). Gathering of amyloid-beta (A&#x03B2;) is considered as a major indicator of neurogenerative disease (<xref ref-type="bibr" rid="ref116">116</xref>). Two crucial proteins, nuclear factor-&#x03BA;B (NF-&#x03BA;B) and (NLRP3), play significant roles in the neurodegenerative disorders development which include Alzheimer&#x2019;s disease (AD) (<xref ref-type="bibr" rid="ref117">117</xref>). Additionally, epigenetic modulation which includes histone deacetylase 2 (HDAC2) alteration is considered as a pivotal factor in Alzheimer&#x2019;s disease (AD) pathogenesis (<xref ref-type="bibr" rid="ref118">118</xref>). Hence, to investigate the therapeutic role of WS in modulation of these genes in AD, Venkata et al. (<xref ref-type="bibr" rid="ref119">119</xref>) performed gene expression analysis using SH-SY5Y cells overexpressing amyloid precursor protein (SH-APP) cells. The results revealed that treatment with WA decreased NF-&#x03BA;B and IL-1&#x03B2; expression significantly, concluding that both of these genes have crucial roles in NF-&#x03BA;B-mediated neuroinflammation. Additionally, Withaferin A administration in SH-APP cells led to a downregulation of A&#x03B2;, an important mediator in the neuroinflammatory processes implicated in the pathogenesis of AD (<xref ref-type="bibr" rid="ref119">119</xref>).</p>
<p>The memory process can be affected by a range of pathological factors, such as neurodegenerative disorders, stroke, tumors, head injuries, oxygen deficiency, cardiac surgery, nutritional deficiencies, neurological complexities such as depression and anxiety as well as side-effects of different medications and the natural process of aging (<xref ref-type="bibr" rid="ref120">120</xref>). Scopolamine, a cholinergic antagonist, induces amnesia in humans as well as in rat models (<xref ref-type="bibr" rid="ref121">121</xref>). These models have found extensive application in comprehending the molecular, biochemical, and behavioral alterations, serving as valuable tools for identifying potential therapeutic targets in the context of memory impairment (<xref ref-type="bibr" rid="ref121">121</xref>). To evaluate the role of <italic>Withania somnifera</italic> in memory impairment, Konar et al. (<xref ref-type="bibr" rid="ref122">122</xref>) assessed the therapeutic targets using alcoholic extracts of <italic>Withania</italic> leaves (i-Extract) in scopolamine-induced male Swiss albino mice of 12&#x2009;weeks. From RT-PCR analysis, it was reported that scopolamine downregulated the mRNA expression of brain derived neurotropic factor (BDNF) and glial fibrillary acidic protein (GFAP) in mouse cerebrum in proportion to time and dose. Furthermore, it was also observed that i-Extract treatment attenuated the downregulation of scopolamine treatment in proportion to dose suggesting that WS serve as putative therapeutic agents to minimize the progression of neurodegenerative disorders (<xref ref-type="bibr" rid="ref122">122</xref>).</p>
<p>Signaling pathways involving RNA in neurodegeneration and their modulation by <italic>W. somnifera</italic> are summarized in <xref ref-type="fig" rid="fig6">Figure 6</xref>.</p>
<fig position="float" id="fig6">
<label>Figure 6</label>
<caption>
<p>Signaling pathways implicating <italic>Withania somnifera</italic> in modulation of RNAs in neurodegeneration. AGE (advanced glycation endproduct) is made and secreted by microgial cells when activated. This induces RAGE expression in neurons leading to cell death causing neurodegenerative diseases. Also, iNOS is activated by AGE which further enhances apoptosis and degeneration of neuronal cells. AGE, when increased in quantity, augments formation of amyloid-beta (A&#x03B2;), tau protein and amyloid precursor protein (APP). This, in turn, induces tau hyperphosphorylation as well as AGE-A&#x03B2; cross-linking. Further, A&#x03B2; binds to RAGEs to activate ERK1/2 pathway. This leads to phosphorylation of NF-&#x03BA;B and proteasomal degradation of IKB&#x03B1;. This, in turn, enables NF-&#x03BA;B translocation toward nucleus and their gene target is expressed simultaneously. Moreover, IL-1&#x03B2; binds to IL-1R and activates IRAK1/4/MyD88/TRAF6 complex leading to NF-&#x03BA;B signaling via TAK1/TAB. This results in expression of their target genes which contribute to neurodegeneration. <italic>Withania somnifera</italic> inhibits the expression of A&#x03B2; and IL-1&#x03B2; at transcriptional level which leads to further inhibition of the downstream pathways. Thus, it reduces the expression of pro-inflammatory genes. Furthermore, <italic>Withania somnifera</italic> induces the activity of brain-derived neurotropic factor (BDNF) which is inhibited in neurodegeneration. The binding of BDNF to tropomyosin-related kinase receptor type B (TrkB) leads to homodimerization and activation of adaptor protein such as Src homology domain 2 (SH2). Thereafter, SH2 activation leads to the activation of phosphoinositide 3-kinases (PI3K)-AKT, Ras-mitogen-activated kinase (Ras-MAPK) and phospholipase C&#x03B3;1-protein kinase C (PKC) signaling pathway.</p>
</caption>
<graphic xlink:href="fnut-11-1370951-g006.tif"/>
</fig>
</sec>
<sec id="sec22">
<label>4.2.3</label>
<title>mRNAs involved in stress</title>
<p>The aging process is linked to alterations in endoplasmic reticulum (ER) chaperones and expression of folding enzymes (<xref ref-type="bibr" rid="ref123">123</xref>). This leads to proteostasis disruption and elevation of misfolded proteins (<xref ref-type="bibr" rid="ref123">123</xref>). Lowering the level of regulatory unfolded proteins results in ER stress which is linked to the unfolded protein response (<xref ref-type="bibr" rid="ref124">124</xref>). Prolonged endoplasmic reticulum (ER) stress stimulates protein kinase-like ER-resident kinase (PERK), activates transcription factor-6 (ATF-6) and inositol requiring 1 (IRE1) apoptotic signaling (<xref ref-type="bibr" rid="ref125">125</xref>). This leads to overexpression of C/EBP homologous protein (CHOP) expression, a proapoptotic-transcription factor (induced in ER stress), and is activated by p38 MAPK (<xref ref-type="bibr" rid="ref126">126</xref>, <xref ref-type="bibr" rid="ref127">127</xref>). CHOP expression is usually regulated at mRNA level via PERK/eIF-2&#x03B1;/ATF6 pathway, ATF4 and IRE1/XBP1 pathway (<xref ref-type="bibr" rid="ref128">128</xref>). Thus, to investigate the effect of Withaferin A in inducing apoptosis through ER stress, Choi et al. (<xref ref-type="bibr" rid="ref129">129</xref>) conducted mRNA expression study of ER-stress specific X-box binding protein (XBP1) using human renal carcinoma cell line (Caki). Real-time PCR analysis showed that splicing of XBP1 mRNA was initiated following treatment with WA which in turn inactivates CHOP. Eukaryotic initiation factor-2&#x03B1; (EIF-2&#x03B1;) phosphorylation is activated by PERK which takes place during ER stress that leads to translational initiation and protein synthesis (<xref ref-type="bibr" rid="ref130">130</xref>). These results suggest key signaling events implicated in ER-stress mediated apoptosis using WA which may facilitate chemopreventive and chemotherapeutic strategies based on Withaferin A (<xref ref-type="bibr" rid="ref129">129</xref>).</p>
<p>&#x201C;Adaptogens&#x201D; are considered as plant-derived extracts or compounds which help organisms to adapt and survive during stress response (<xref ref-type="bibr" rid="ref131">131</xref>). Activation of the gene that regulates stress response, which in turn postpones aging or ameliorates aging, is an effective way of tackling aging-associated diseases (<xref ref-type="bibr" rid="ref132">132</xref>). Panossian et al. (<xref ref-type="bibr" rid="ref133">133</xref>) studied adaptogens effect in stress and age-related diseases by using dunal root extract of WS in human T98G neuroglia cell line using mRNA expression profiling. It was reported that WS along with other adaptogens plays a major role in altering homeostasis. Also, it was observed that WS extracts downregulated PDE9A gene at transcriptional level. This indicated their potential to modulate transcriptional regulation in preventing aging-related and stress-induced disorders (<xref ref-type="bibr" rid="ref133">133</xref>).</p>
<p>As people get older, the consistency or stability of circadian clock gene expression patterns is understood to potentially change or become less resilient (<xref ref-type="bibr" rid="ref134">134</xref>). The suprachiasmatic nucleus (SCN) serves as the central master pacemaker, orchestrating the regulation of peripheral clocks found in all body tissues (<xref ref-type="bibr" rid="ref135">135</xref>). In aging or in age-related complexities circadian timekeeping systems decrease (<xref ref-type="bibr" rid="ref136">136</xref>). Circadian clocks operate through intricate transcriptional translational feedback loops (<xref ref-type="bibr" rid="ref137">137</xref>). Two supplementary loops which include RORs, NFIL3, DBP and REV-ERBs, collaborate to produce discernible rhythms within a period of 24&#x2009;h (<xref ref-type="bibr" rid="ref138">138</xref>). Kukkemane et al. (<xref ref-type="bibr" rid="ref139">139</xref>) evaluated WS influence on rhythmic alteration and levels on a daily basis with regard to age. They examined the expression of a hydroalcoholic leaf extract of WS using male Wistar rats. Through qRT-PCR analysis, they observed a significant chrono modulatory effect of WS. This effect was evident in the restoration of rhythms and pulses of clock genes namely Sirtuin1 and NRF2 daily. It was concluded that WS may offer therapeutic benefits in mitigating age-related disruptions in the circadian clock. This potential benefit is proposed to operate through two key pathways: SIRT1 modulation and antioxidant effects (<xref ref-type="bibr" rid="ref139">139</xref>).</p>
<p>The regulation of signaling pathways in stress by <italic>Withania somnifera</italic> at RNA level are summarized in <xref ref-type="fig" rid="fig7">Figure 7</xref>.</p>
<fig position="float" id="fig7">
<label>Figure 7</label>
<caption>
<p>Signaling pathways implicating <italic>Withania somnifera</italic> in modulation of RNAs in ER stress. In ER stress, GRP78 (glucose-regulated protein) attaches to the misfolded proteins present in the endoplasmic reticulum (ER) which releases transmembrane proteins from endoplasmic reticulum (ER) namely inositol-requiring enzyme (IRE1), PRKR-like ER kinase (PERK) and activating transcription factor 6 (ATF6). These three proteins, when activated, initiate UPR signaling cascades. XBP1 mRNA is transcribed into XBP1s after cleaving by IRE1. PERK dimerization leads to phosphorylation of eIF2a that causes inhibition of protein translation. Withaferin A induces the splicing of XBP1 which in turn activates CHOP expression which resulting in inhibition of mitochondrial mediated apoptosis.</p>
</caption>
<graphic xlink:href="fnut-11-1370951-g007.tif"/>
</fig>
</sec>
<sec id="sec23">
<label>4.2.4</label>
<title>mRNAs involved in organ fibrosis</title>
<p>Fibrosis is characterized by endpoint of pathological remodeling which triggers the progression of various chronic disorders and aging-associated organ damage (<xref ref-type="bibr" rid="ref140">140</xref>). Hence, it is important to alleviate the symptoms or inhibit the downstream pathways to prevent fibrosis. To investigate the potential role of Withaferin A as a preventive constituent in fibrosis, a study was conducted by Gu et al. (<xref ref-type="bibr" rid="ref141">141</xref>) using male 8-week-old C57/BL6 mice. Silent information regulator (SIR) protein family exhibits an important role in cell cycle regulation, mitochondrial homeostasis maintenance, caloric restriction and lipid metabolism to regulate glucose levels. Studies have elucidated that SIRT3 deficiency can aggravate liver injury while SIRT3 activation led to alleviate liver fibrosis (<xref ref-type="bibr" rid="ref142">142</xref>). In this study, mRNA expression level of SIRT3 was assessed after treatment of WA in C57/BL6 mice. It was reported that WA led to decrease of liver fibrosis in a SIRT3-dependent manner (<xref ref-type="bibr" rid="ref141">141</xref>).</p>
<p>Aged kidney is susceptible to kidney injury which is indicated by extended inflammation that can increase dysfunction of renal tissue (<xref ref-type="bibr" rid="ref143">143</xref>). NF-&#x03BA;B signaling pathway is a mediator between inflammation and fibrosis in kidney (<xref ref-type="bibr" rid="ref144">144</xref>). Several stimuli can trigger NF-&#x03BA;B activity in the kidney such as TNF (<xref ref-type="bibr" rid="ref145">145</xref>) and angiotensin II (<xref ref-type="bibr" rid="ref146">146</xref>), and both of these are linked to chronic kidney disease. The target genes of NF-&#x03BA;B are long but include CCL2 and CCL5 which are linked to renal fibrosis (<xref ref-type="bibr" rid="ref147">147</xref>). Therefore, to assess the role of WS in regulating these inflammatory genes, Grunz-Borgmann et al. (<xref ref-type="bibr" rid="ref148">148</xref>) studied the expression using hot water soluble extracts of WS in rat kidney NRK-52E cell line. Transcriptomic analysis was performed using real-time PCR by using different doses of WS. It was reported that WS pre-treatment gradually inhibited CCL2 and CCL5 expression NRK-52E cells. Also, pre-treatment with WS reduced the effect of LPS-induced NF-&#x03BA;B activity indicating anti-inflammatory effect of WS and alleviating renal fibrosis (<xref ref-type="bibr" rid="ref148">148</xref>).</p>
<p>Hepatic toxicity has been proved to be aggravated during aging especially by the consumption of acetaminophen (APAP) (<xref ref-type="bibr" rid="ref149">149</xref>). APAP is generally used as an analgesic and antipyretic drug (<xref ref-type="bibr" rid="ref150">150</xref>). However, when used in large concentrations, it causes hepatotoxicity and necrosis in humans (<xref ref-type="bibr" rid="ref151">151</xref>). Devkar et al. (<xref ref-type="bibr" rid="ref152">152</xref>) studied the outcome of withanolide-rich fraction (WRF) in liver protection using male Swiss albino mice. Expression of TNF-&#x03B1;, IL-1&#x03B2;, iNOS and COX-II was assessed at the transcriptional level in APAP-treated mice. It was reported that WRF significantly downregulated TNF-&#x03B1; and IL-1&#x03B2; transcriptionally corelating with the dose level. However, mRNA expression of iNOS and COX-II was reduced at higher dose (200&#x2009;mg/kg) of WRF. Reduced expression of COX-2, iNOS, IL-1&#x03B2;, TNF-&#x03B1; achieved by WRF intervention showed anti-inflammatory and antioxidant properties of WS leading to enhanced liver protection (<xref ref-type="bibr" rid="ref152">152</xref>).</p>
<p>The modulation of RNA in signaling involved in organ fibrosis by <italic>Withania somnifera</italic> is summarized in <xref ref-type="fig" rid="fig8">Figure 8</xref>.</p>
<fig position="float" id="fig8">
<label>Figure 8</label>
<caption>
<p>Signaling pathways implicating <italic>Withania somnifera</italic> in modulation of RNAs in organ fibrosis. TNF-&#x03B1; binds to TNFR and releases SODD leading to activation of TRADD/RIP1/TRAF2/5 complex; the complex activates TAK1/TAB1/2/3 and NIK; TAK1/TAB1/2/3 activates CREB and C/EBP&#x03B2; via p38 and MKK4/7-JNK signaling. NIK activates IKK/NF&#x03BA;B signaling; IL-1 ligand receptor complex activates IRAK1/4/MyD88/TRAF6 complex further activating IKK/NF&#x03BA;B signaling. Moreover, LPS binds to TLR4 activating NF&#x03BA;B via TRAF6 signaling. CREB, C/EBP&#x03B2; and NF&#x03BA;B results in the transcription of IL-1&#x03B2; and TNF-&#x03B1;. WS inhibits the binding of TNF-&#x03B1;, IL-1&#x03B2; and LPS to TNFR, IL-1R and TLR4, respectively, and suppresses inflammation resulting in attenuation of fibrosis.</p>
</caption>
<graphic xlink:href="fnut-11-1370951-g008.tif"/>
</fig>
</sec>
<sec id="sec24">
<label>4.2.5</label>
<title>mRNAs involved in muscle impairment</title>
<p>The decline in mass and function of skeletal muscle typically commences around the age of 40, with muscle mass potentially diminishing at a rate of 1&#x2013;2% annually after reaching 50&#x2009;years of age (<xref ref-type="bibr" rid="ref153">153</xref>). This can lead to escalating complications in health-related outcomes which lead to functional restriction of the body (<xref ref-type="bibr" rid="ref154">154</xref>). During aging, reduced muscle building capacity leads to loss of muscle mass (<xref ref-type="bibr" rid="ref154">154</xref>). It is believed that the loss of muscle due to aging is influenced by apoptosis, however the mechanisms behind it remain unclear (<xref ref-type="bibr" rid="ref153">153</xref>). The Bcl-2 protein family is implicated in apoptotic signaling pathway, consisting of Bax and Bcl-2 proteins, which regulate the process of mitochondria-mediated cell death (<xref ref-type="bibr" rid="ref155">155</xref>). While Bcl-2 helps prevent cell apoptosis, Bax, a protein like Bcl-2, promotes cell death (<xref ref-type="bibr" rid="ref156">156</xref>). To understand the effect of WS on the regulation of apoptotic proteins, Panda et al. (<xref ref-type="bibr" rid="ref153">153</xref>) conducted transcriptomic analysis using hydroalcoholic extracts of WS in male Sprague Dawley rats. Their study revealed that expression of Bax was reduced after the treatment with WS, along with an increase in Bcl-2 expression. It was therefore inferred that WS may offer a therapeutic approach to address muscle weakness and deterioration (<xref ref-type="bibr" rid="ref153">153</xref>).</p>
<p>Signaling pathway modulated by <italic>Withania somnifera</italic> in muscle impairment is depicted in <xref ref-type="fig" rid="fig9">Figure 9</xref>.</p>
<fig position="float" id="fig9">
<label>Figure 9</label>
<caption>
<p>Signaling pathway implicating <italic>Withania somnifera</italic> in modulation of RNAs in muscle impairment. During oxidative stress, the mRNA level of Bax is increased while the mRNA level of Bcl is decreased in mitochondria. This leads to muscular apoptosis. Another pathway which is caspase dependent includes apoptosis due to stimulation of Caspase-3. Further, cytochrome c oozes out of the mitochondria in response to changes in Bax/Bcl-2 ratio. Introduction of WS inhibits Bax expression at transcriptional level which further inhibits apoptosis in muscle.</p>
</caption>
<graphic xlink:href="fnut-11-1370951-g009.tif"/>
</fig>
</sec>
<sec id="sec25">
<label>4.2.6</label>
<title>Miscellaneous mRNAs in aging</title>
<p>Telomerase shortening is considered as the main factor which escalates the rate of aging and promotes degeneration processes (<xref ref-type="bibr" rid="ref157">157</xref>). Telomere is progressively shortened with each DNA replication, which leads to appearance of critically short telomeres (<xref ref-type="bibr" rid="ref158">158</xref>). Low telomerase activity is targeted by both exogenous and endogenous factors which lead to DNA damage and low maintenance of cell function (<xref ref-type="bibr" rid="ref159">159</xref>). Withanolide, an active constituent of WS indicated 29.7% extension in the lifespan of <italic>C.elegans</italic> via regulation of insulin/IGF-1 signaling pathway (<xref ref-type="bibr" rid="ref160">160</xref>, <xref ref-type="bibr" rid="ref161">161</xref>).</p>
<p>Cellular senescence refers to cell-cycle suspension and secretion of inflammatory mediators which leads to aging and complications associated with aging (<xref ref-type="bibr" rid="ref162">162</xref>). Obesity is an important comorbidity with increase in burden of senescent cell as well as neuropsychiatric disorders such as anxiety and depression (<xref ref-type="bibr" rid="ref163">163</xref>). Withaferin A aids in alleviating several metabolic disorders. Therefore, to evaluate the protective effect of Withaferin A in conditions such as obesity, Abu Bakar et al. (<xref ref-type="bibr" rid="ref164">164</xref>) performed a study using HFD-induced obese mice. They treated the mice with Withaferin A for 12&#x2009;weeks. Pro-inflammatory cytokines were reduced following WA treatment. Additionally, using transcriptional analysis by real-time PCR, expression of all genes involved in inflammation such as TLR4, CCR2, NF-&#x03BA;B, COX2, TNF-&#x03B1;, IL-1&#x03B2; and CCL2/3 were downregulated following WA treatment. Also, WA downregulated the mRNA expression of main regulators of lipid metabolism (PPAR&#x03B1; and &#x03B3;, CD36, FAS and CPT1). These results suggested that WA treatment can help in regulating lipid and glucose metabolism in liver at the transcriptional level and provide a therapeutic response for WA in obesity (<xref ref-type="bibr" rid="ref164">164</xref>).</p>
<p>Changes in vascular extracellular matrix in aging appear as one the major facets of dysregulated angiogenesis (<xref ref-type="bibr" rid="ref165">165</xref>). In the process of angiogenesis, endothelial cells lead to the formation of new vasculature (<xref ref-type="bibr" rid="ref166">166</xref>). Additionally, it is implicated in the progression of tumor cells and metastasis (<xref ref-type="bibr" rid="ref167">167</xref>). The uniform release of VEGF, bFGF, PDGF and TGF lead to the activation of angiogenesis (<xref ref-type="bibr" rid="ref168">168</xref>). Transcriptional as well as post-transcriptional mechanisms tightly regulate the expression level of VEGF mRNA (<xref ref-type="bibr" rid="ref169">169</xref>). Recent research has unveiled the role of signaling pathways and genetic components governing this expression. The activation of the transcription factor Sp1 precedes VEGF promoter activity, showing that VEGF overexpression is regulated by Sp1 activation (<xref ref-type="bibr" rid="ref170">170</xref>). This overexpression leads to angiogenesis and cancer progression (<xref ref-type="bibr" rid="ref171">171</xref>). Sp1 has been evaluated as a crucial factor in tumor angiogenesis and aids in the pathogenesis of pancreatic adenocarcinoma (<xref ref-type="bibr" rid="ref172">172</xref>). Santhekadur et al. (<xref ref-type="bibr" rid="ref170">170</xref>) performed an experiment to explore the antiangiogenic effects elicited by WS, which resulted in a reduction in ascites fluid and VEGF expression, regulated by the Sp1 transcription factor, using Ehrlich ascites tumor (EAT) cells-bearing mice. Nuclear extracts were obtained from both untreated and withaferin A-treated EAT cells, and the binding activity of Sp1-DNA was studied using Electrophoretic Mobility Shift Assay (EMSA) with Sp1 oligonucleotides. The findings showed that Sp1 binding to VEGF gene promoter region was inhibited by withaferin A (<xref ref-type="bibr" rid="ref170">170</xref>). Further, a study was carried out by Sajida and Prabhu (<xref ref-type="bibr" rid="ref173">173</xref>) to analyze the activity of root extracts of WS using A549 human lung carcinoma cell line via inhibition mechanisms including antioxidant, autophagy and angiogenic inhibition. The expressions of VEGF, angiogenin and MMP-2 were assessed at the transcriptional level using qRT-PCR. It was reported that angiotensin and VEGF gene expression was significantly downregulated in WS extract-treated cells but there was a lower effect on MMP-2 expression (<xref ref-type="bibr" rid="ref173">173</xref>).</p>
<p>The signaling pathways involving <italic>Withania somnifera</italic> in modulating RNAs in above-mentioned cellular events are illustrated in <xref ref-type="fig" rid="fig10">Figure 10</xref>. In addition, RNAs modulated by <italic>Withania somnifera</italic> are represented in <xref ref-type="table" rid="tab1">Table 1</xref> and summarized in <xref ref-type="fig" rid="fig11">Figure 11</xref>.</p>
<fig position="float" id="fig10">
<label>Figure 10</label>
<caption>
<p>Signaling pathways implicating <italic>Withania somnifera</italic> in modulation of RNAs in other complications. Growth factor (GF) and receptor tyrosine kinase (RTK) binding leads to its phosphorylation which further initiates PI3K/AKT/SP1 signaling; RAS/RAF activates SP1 via MAP3K; both the events lead to transcription of VEGF resulting in angiogenesis. Withaferin A inhibits SP1 suppressing VEGF expression which results in the prevention of angiogenesis and oncogenic potential.</p>
</caption>
<graphic xlink:href="fnut-11-1370951-g010.tif"/>
</fig>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Modulation of RNAs by <italic>Withania somnifera</italic> in aging.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Sr.no</th>
<th align="left" valign="top">Disease phenotype</th>
<th align="left" valign="top">Biological matrix</th>
<th align="left" valign="top">RNA</th>
<th align="left" valign="top">Modulation</th>
<th align="left" valign="top"><italic>Withania somnifera</italic> source</th>
<th align="left" valign="top">Doses used</th>
<th align="center" valign="top">Toxicity or adverse events</th>
<th align="center" valign="top">Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">1.</td>
<td align="left" valign="top">Stress and aging-related disorders</td>
<td align="left" valign="top">T98G neuroglia cells</td>
<td align="left" valign="top">PDE9A, PDE9S</td>
<td align="left" valign="top"><italic>Withania</italic> extract downregulated PDE9A gene</td>
<td align="left" valign="top">WS root extract 5&#x2009;mg/mL (KSM-66)</td>
<td align="left" valign="top">5&#x2009;mg/L and 1.5&#x2009;mg/L</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref133">133</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">2.</td>
<td align="left" valign="top">Aging-related disorders which include inflammatory conditions, Alzheimer&#x2019;s disease</td>
<td align="left" valign="top">T98G neuroglia cells</td>
<td align="left" valign="top">ALOX12, ALOX5AP, PTGER3, LTC4S, DPEP2, PLA2G16, PLA2G5, PLB1,<break/>PTGIS, PTGS2, PTGER2, PLA2G7, PTGFR, TBXA2R</td>
<td align="left" valign="top"><italic>WS</italic> downregulated ALOX12, LTCS4, DPEP2 and ALOX5AP expression</td>
<td align="left" valign="top">WS roots, withanolide 5.5%</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref174">174</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">3.</td>
<td align="left" valign="top">Obesity</td>
<td align="left" valign="top">Male C57BL/6&#x2009;J mice</td>
<td align="left" valign="top">mRNA expression of PPAR&#x03B3;, CD36, FAS, LXR&#x03B1;, SREB P-1c, PPAR&#x03B1;, CPT1, and ACC</td>
<td align="left" valign="top">WA downregulated the expression of PPAR&#x03B1;, CS36, CPT1, PPAR&#x03B3; and FAS at transcriptional level</td>
<td align="left" valign="top">Withaferin A (WA) purity &#x2265;95%</td>
<td align="left" valign="top">1.25&#x2009;mg/kg/day</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref164">164</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">4.</td>
<td align="left" valign="top">Liver Fibrosis</td>
<td align="left" valign="top">C57/BL6 mice</td>
<td align="left" valign="top">mRNA expression of SIRT1 to SIRT7</td>
<td align="left" valign="top">WA inhibited SIRT3</td>
<td align="left" valign="top">Withaferin A of purity &#x2265;99%</td>
<td align="left" valign="top">CCl4&#x2009;+&#x2009;WA 2.5&#x2009;mg/kg and 10&#x2009;mg/kg</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref141">141</xref>)</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">5.</td>
<td align="left" valign="top" rowspan="2">Psoriasis, allergic contact dermatitis and atopic dermatitis</td>
<td align="left" valign="top">Human keratinocyte cell line HaCaT</td>
<td align="left" valign="top" rowspan="2">IL-6, IL-8, IL-12 TGF-&#x03B2; and TNF-&#x03B1; mRNA</td>
<td align="left" valign="top" rowspan="2">ASH-WEX inhibited expression of IL-6, IL-8, IL-12 and TNF-&#x03B1;.<break/>ASH-WEX increases TGF-&#x03B2; expression</td>
<td align="left" valign="top" rowspan="2">Water extract of Ashwagandha roots</td>
<td align="left" valign="top">0.25 and 1.5&#x2009;mg/mL</td>
<td align="center" valign="top" rowspan="2">&#x2013;</td>
<td align="center" valign="top" rowspan="2">(<xref ref-type="bibr" rid="ref112">112</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">7-week-old male C57BL/6&#x2009;J mice</td>
<td align="left" valign="top">10&#x2009;mg/mL</td>
</tr>
<tr>
<td align="left" valign="top">6.</td>
<td align="left" valign="top">Anticancer effect through ER stress</td>
<td align="left" valign="top">Renal carcinoma cell line (Caki)</td>
<td align="left" valign="top">X-box binding protein (XBP1)</td>
<td align="left" valign="top">WA induces XBP1 splicing which results in CHOP inactivation.</td>
<td align="left" valign="top">Withaferin A purchased from Biomol</td>
<td align="left" valign="top">2, 4, 6&#x2009;&#x03BC;M for 5&#x2009;h</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref129">129</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">7.</td>
<td align="left" valign="top">Hepatic toxicity</td>
<td align="left" valign="top">Male Swiss albino mice</td>
<td align="left" valign="top">TNF-&#x03B1;, COX-II, iNOS and IL-1&#x03B2;</td>
<td align="left" valign="top">WRF decreased <italic>TNF-&#x03B1;</italic> and <italic>IL-1&#x03B2;</italic> expression</td>
<td align="left" valign="top">Withaferin-rich fraction isolated from <italic>Withania somnifera</italic> roots</td>
<td align="left" valign="top">50, 100 and 200&#x2009;mg/kg</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref152">152</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">8.</td>
<td align="left" valign="top">Osteoarthritis</td>
<td align="left" valign="top">Rabbit articular chondrocytes</td>
<td align="left" valign="top">COX-II</td>
<td align="left" valign="top">WA increased the expression of miR-25 by inducing COX-2</td>
<td align="left" valign="top">Withaferin A (Calbiochem)</td>
<td align="left" valign="top">3&#x2009;&#x03BC;M WA</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref105">105</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">9.</td>
<td align="left" valign="top">Alzheimer&#x2019;s Disease</td>
<td align="left" valign="top">SH-APP cells</td>
<td align="left" valign="top">NF-&#x03BA;B, IL-1&#x03B2;, IL-6, A&#x03B2;</td>
<td align="left" valign="top">WA downregulated NF-&#x03BA;B, IL-1&#x03B2; and A&#x03B2; expression<break/>WA upregulated IL-6 expression</td>
<td align="left" valign="top">Withaferin A (Sigma<break/>Aldrich)</td>
<td align="left" valign="top">1&#x2009;&#x03BC;M WA</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref119">119</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">10.</td>
<td align="left" valign="top">Renal Fibrosis</td>
<td align="left" valign="top">Rat kidney NRK-52E cell line</td>
<td align="left" valign="top">NF-&#x03BA;B, CCL2, CCL5</td>
<td align="left" valign="top"><italic>Withania somnifera</italic> downregulated the expression of NF-&#x03BA;B, CCL2 and CCL5</td>
<td align="left" valign="top">Water soluble extracts of Ashwagandha (Now Foods,<break/>Bloomingdale, IL, USA)</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref148">148</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">11.</td>
<td align="left" valign="top">Memory impairment</td>
<td align="left" valign="top">Swiss male albino mice</td>
<td align="left" valign="top">BDNF and GFAP</td>
<td align="left" valign="top"><italic>Withania somnifera</italic> downregulates the effect of scopolamine hence increasing BDNF and GFAP expression</td>
<td align="left" valign="top">Alcoholic extract of WS leaves</td>
<td align="left" valign="top">100, 200 and 300&#x2009;mg per kg</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref122">122</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">12.</td>
<td align="left" valign="top">Lung adenocarcinoma</td>
<td align="left" valign="top">A549 human lung adenocarcinoma cell line</td>
<td align="left" valign="top">VEGF, angiogenin and MMP-2</td>
<td align="left" valign="top"><italic>Withania somnifera</italic> significantly downregulates the expression of VEGF, angiogenin and had lower effect on MMP-2</td>
<td align="left" valign="top">Ethanolic extracts of <italic>Withania somnifera</italic></td>
<td align="left" valign="top">12.5, 25, 50, 100 and 200&#x2009;&#x03BC;g/mL</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref173">173</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">13.</td>
<td align="left" valign="top">Circadian rhythms</td>
<td align="left" valign="top">Male Swiss Wistar rats</td>
<td align="left" valign="top">SIRT1, NRF2 and <italic>rRev-erba</italic></td>
<td align="left" valign="top"><italic>Withania somnifera</italic> restored the expression of SIRT1 and NRF2</td>
<td align="left" valign="top">Hydro-alcoholic leaf extract of <italic>Withania somnifera</italic></td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref139">139</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">14.</td>
<td align="left" valign="top">Muscle strength</td>
<td align="left" valign="top">Male Sprague Dawley rats</td>
<td align="left" valign="top">Bax and Bcl-2</td>
<td align="left" valign="top"><italic>Withania somnifera</italic> significantly decreases Bax expression and significantly increases Bcl-2 expression</td>
<td align="left" valign="top">Hydro-alcoholic extract of Ashwagandha</td>
<td align="left" valign="top">500&#x2009;mg/kg</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref153">153</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">15.</td>
<td align="left" valign="top">Telomere strength</td>
<td align="left" valign="top"><italic>C. elegans</italic></td>
<td align="left" valign="top">IIS (insulin/IGF-1) cascade</td>
<td align="left" valign="top">WA upregulated <italic>skn-1</italic> and <italic>gst-4 (a major components of IIS)</italic></td>
<td align="left" valign="top">Withanolide A (Natural Remedies)</td>
<td align="left" valign="top">5&#x2009;&#x03BC;M</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref161">161</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">16.</td>
<td align="left" valign="top">CVD</td>
<td align="left" valign="top">Human umbilical vein endothelial cells (HUVECs).</td>
<td align="left" valign="top">lncRNA H19</td>
<td align="left" valign="top"><italic>Withania somnifera</italic> increases the effect of H19</td>
<td align="left" valign="top">&#x2013;</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref175">175</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">17.</td>
<td align="left" valign="top">Anti-angiogenic effect</td>
<td align="left" valign="top">Ehrlich ascites tumor (EAT) cells bearing mice</td>
<td align="left" valign="top">Sp-1</td>
<td align="left" valign="top"><italic>Withania somnifera</italic> inhibits the effect of Sp-1</td>
<td align="left" valign="top">Withaferin A</td>
<td align="left" valign="top">7&#x2009;mg/kg/day/mouse</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref170">170</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">18.</td>
<td align="left" valign="top">Anxiety and neuroinflammation</td>
<td align="left" valign="top">Wistar albino mice</td>
<td align="left" valign="top">PPAR&#x03B3;, iNOS, MCP-1, TNF-&#x03B1;, IL-1&#x03B2;, IL-6, Bax and Bcl-2</td>
<td align="left" valign="top">WS downregulated MCP-1, IL-6, TNF-&#x03B1;, IL-1&#x03B2;, iNOS, PPAR&#x03B3;, Bax and Bcl-2</td>
<td align="left" valign="top">Leaf powder extract of WS</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref113">113</xref>)</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig position="float" id="fig11">
<label>Figure 11</label>
<caption>
<p>Genes modulated by <italic>Withania somnifera</italic>.</p>
</caption>
<graphic xlink:href="fnut-11-1370951-g011.tif"/>
</fig>
</sec>
</sec>
</sec>
<sec id="sec26">
<label>5</label>
<title>Sequencing studies with <italic>Withania somnifera</italic> in aging/inflammation</title>
<p>Panossian et al. (<xref ref-type="bibr" rid="ref133">133</xref>) studied the expression of various plant-based adaptogens using mRNA sequencing to infer the role of plant extracts in alleviating complications that are concomitant with aging and stress. They performed RNA-seq to assess changes in gene expressions in adaptogen-treated T98G human neuroglia cells. The functional relevance of dysregulated genes to adaptive stress signaling was analyzed. Seventy-five genes were found to encode various biological components, which includes enzymes used in metabolism; neurohormones such as CRH, UCN, GNRH1; GPCR and transmembrane receptors like PLXNA4, GPR19, TLR9, PRLR, GPR158, GP1BA, VIPR2, CHRNE; transmembrane channels; protein kinases including FLT1, ROS1, MAPK10, MERTK, TTN, MAPK13, PRKCH; ligand-dependent nuclear receptor RORA; phosphatases namely PTPRD, PTPRR; transcription regulators such as ZNF467, FOS, SCX, ZFPM2, ZNF396, STAT5A, FOXO6; peptidases such as TLL1, PAPPA2; and various other proteins (<xref ref-type="bibr" rid="ref133">133</xref>). These findings indicated that adaptogens might impact multiple adaptive stress-response signals, including those related to cyclic AMP, MAPK, NRF2 oxidative stress, glucocorticoid receptor (GR or NR3C1), maturation of neurons as well as CREB pathway which occurs in neurons and synapses, corticotropin releasing hormone, AMPK, melatonin, endothelial nitric oxide synthase, nutrient sensing in enteroendocrine cells mediated by GPCR, G&#x03B1;s, GP6, opioid, renin-angiotensin and conditions such as neuropathic pain, and neuroinflammation. These results suggested that adaptogens provide a diverse biological function, eliciting numerous effects in regulating cellular metabolism and maintaining homeostasis at the transcriptional level (<xref ref-type="bibr" rid="ref133">133</xref>).</p>
<p>Moreover, another study by Panossian et al. (<xref ref-type="bibr" rid="ref174">174</xref>) elucidated anti-inflammatory properties of WS using T98G human neuroglia cell line using mRNA sequencing. A total of 14 genes which were included in eicosanoids pathway were altered by WS extracts. This includes arachidonate 5-lipoxygenase activating protein (ALOX5AP), GPCR such as PTGFR, TBXA2R, PTGER2, PTGER3, and several enzymes. It was inferred that downregulation of ALOX12 expression plays a key role in neurotoxicity. In addition, WS downregulated ALOX5AP, leukotriene C4 synthase (LTC4S) and DPEP2 genes involved in biosynthesis of leukotrienes pathway resulting in its inhibition. This, in turn, inhibited neuroinflammation and neurodegeneration leading to the suppression of Alzheimer&#x2019;s disease complications. Also, PTGER3 expression was increased by WS which aids in ulcer prevention in the duodenum and small intestine. Moreover, EP3 receptor genes are upregulated in breast cancer patients. Therefore, suppression of PTGR3 can be used in treating breast cancer. Combination of <italic>Rhodiola</italic> and <italic>Withania</italic> inhibited LTC4 signaling by downregulation of LTC4S and upregulation of PTGER3 at genetic level which may serve as a promising approach in treating allergic asthma (<xref ref-type="bibr" rid="ref174">174</xref>).</p>
</sec>
<sec id="sec27">
<label>6</label>
<title>Clinical trials including RNA markers in aging and inflammation</title>
<p>Several trials have been performed in various parts of the world to study the effects of RNA markers (which include mRNAs and non-coding RNAs) on various aging and inflammation-related conditions such as CVD, neuroinflammatory and neurodegenerative complications, as well as complications related to metabolism in humans. Clinical trials data have been extracted from <ext-link xlink:href="http://ClinicalTrials.gov" ext-link-type="uri">ClinicalTrials.gov</ext-link> (<xref ref-type="bibr" rid="ref176">176</xref>), EU Clinical Trials Register (<xref ref-type="bibr" rid="ref177">177</xref>) and Brazilian Registry of Clinical Trials (ReBEC) (<xref ref-type="bibr" rid="ref178">178</xref>). These trials aim to evaluate the RNA-based interventions, as well as to identify biomarkers of response and resistance. These results may provide new understanding about aging and inflammation and insights into their mechanisms at the molecular level. This will pave the way for the advancement of novel therapeutic and preventive strategies in aging-related diseases. Clinical trials including RNA markers in aging and inflammation are summarized in <xref ref-type="table" rid="tab2">Tables 2</xref>, <xref ref-type="table" rid="tab3">3</xref>.</p>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption>
<p>Clinical trials including RNA studies in aging and inflammation.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Registry ID</th>
<th align="left" valign="top">Trial status</th>
<th align="left" valign="top">Trial phase</th>
<th align="center" valign="top">Participants (<italic>n</italic>)</th>
<th align="left" valign="top">Medical complications</th>
<th align="left" valign="top">Objective of the trial</th>
<th align="left" valign="top">Dose used</th>
<th align="center" valign="top">References</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">NCT02432287</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">Phase 4</td>
<td align="center" valign="top">16</td>
<td align="left" valign="top">Aging</td>
<td align="left" valign="top">To assess gene expression pattern in older individuals with glucose intolerance back to a profile similar to that of young, healthy subjects</td>
<td align="left" valign="top">1700&#x2009;mg/day</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref179">179</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT01480037</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">38</td>
<td align="left" valign="top">Aging; without mention of psychosis</td>
<td align="left" valign="top">To determine the gene expression in association with oxidative stress in the peripheral blood of the three observed groups, we&#x2019;ll be utilizing the Superarray&#x2014;RT2 Profiler&#x2122; PCR Array System</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref180">180</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT03300388</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">85</td>
<td align="left" valign="top">Obesity, Aging and Inflammation</td>
<td align="left" valign="top">To analyze the RNA and miRNA expression in adipose tissue</td>
<td align="left" valign="top">1.650&#x2009;mg/day of DHA</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref181">181</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT05235958</td>
<td align="left" valign="top">Enrolling</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">43</td>
<td align="left" valign="top">Cardiovascular risk, sedentary lifestyle and endothelial function</td>
<td align="left" valign="top">To measure various micro-RNAs that play pivotal roles in regulating endothelial function within the macrovascular circulation</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref182">182</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT03104075</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">Phase 4</td>
<td align="center" valign="top">40</td>
<td align="left" valign="top">Pneumonia and aging</td>
<td align="left" valign="top">To assess quantitative analysis using RNA-seq and ATAC-seq methods to elucidate the epigenetic makeup of immune cells concerning their reaction to the vaccine</td>
<td align="left" valign="top">Prevnar 13 and Pneumovax 23 (Pneumococcal vaccine) 0.5&#x2009;mL dose</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref183">183</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT03056105</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">66</td>
<td align="left" valign="top">Aging</td>
<td align="left" valign="top">To assess expression of telomere regulated- and inflammation-related genes</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref184">184</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT03289832</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">25</td>
<td align="left" valign="top">Healthy adults</td>
<td align="left" valign="top">To assess modulation in tissue-based RNA biomarkers of inflammation and alteration of aging-related RNA markers</td>
<td align="left" valign="top">Crucera-SGS<sup>&#x00AE;</sup> (450&#x2009;mg/day) and Meriva 500-SF<sup>&#x00AE;</sup> (1,000&#x2009;mg/day)</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref185">185</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT01508091</td>
<td align="left" valign="top">Unknown</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">48</td>
<td align="left" valign="top">Obesity</td>
<td align="left" valign="top">To measure UCP3 mRNA expression in vastus lateralis</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref186">186</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT05062707</td>
<td align="left" valign="top">Recruiting</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">120</td>
<td align="left" valign="top">Cancer</td>
<td align="left" valign="top">To assess early aging- and senescence- related markers</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref187">187</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT03464500</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">90</td>
<td align="left" valign="top">Muscle function, mitochondrial function, overweight, healthy aging</td>
<td align="left" valign="top">To assess change in the gut microbial diversity via 16&#x2009;s RNA sequencing performed on faecal samples.</td>
<td align="left" valign="top">Mitopure 500&#x2009;mg and Mitopure 1,000&#x2009;mg</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref188">188</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT02132091</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">37</td>
<td align="left" valign="top">Aging, metabolism</td>
<td align="left" valign="top">To assess effect of intermittent fasting on aging- and oxidative stress- related markers</td>
<td align="left" valign="top">One gram of Vit. C and 400&#x2009;IU of Vit. E</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref189">189</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT04079218</td>
<td align="left" valign="top">Active, not recruiting</td>
<td align="left" valign="top">Phase 4</td>
<td align="center" valign="top">51</td>
<td align="left" valign="top">Aging, HIV infection, Vaginal atrophy, Menopause, Premature aging, Dysbiosis</td>
<td align="left" valign="top">To determine the effect of HIV on genital tract of aged women and to study the effect of drug efficacy in postmenopausal women suffering from HIV</td>
<td align="left" valign="top">Estradiol tablet (10&#x2009;&#x03BC;g), intravaginally everyday (2&#x2009;weeks)</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref190">190</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT05895591</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">33</td>
<td align="left" valign="top">Anti-aging</td>
<td align="left" valign="top">To assess clinical efficacy of anti-aging cream.</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref191">191</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT04199195</td>
<td align="left" valign="top">Enrolling by invitation</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">360</td>
<td align="left" valign="top">Aging</td>
<td align="left" valign="top">To study the function of gut microbiome during aging to provide insights for improving the lifestyle of elderly</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref192">192</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT05593939</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">Phase 2</td>
<td align="center" valign="top">80</td>
<td align="left" valign="top">Aging</td>
<td align="left" valign="top">To assess and measure the slow aging inn humans by using various interventions</td>
<td align="left" valign="top">Nicotinamide riboside tablets 1&#x2009;g in morning and 1&#x2009;g in evening</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref193">193</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT04945265</td>
<td align="left" valign="top">Not yet recruiting</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">500</td>
<td align="left" valign="top">Female infertility</td>
<td align="left" valign="top">To provide insights into granulosa cell function which is the root cause of fertility</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref194">194</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT06096532</td>
<td align="left" valign="top">Not yet recruiting</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">24</td>
<td align="left" valign="top">Healthy, Aging</td>
<td align="left" valign="top">To investigate the adipose tissue flow in elderly</td>
<td align="left" valign="top">Oral glucose 75 gm</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref195">195</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT02953093</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">Phase 2</td>
<td align="center" valign="top">10</td>
<td align="left" valign="top">Aging</td>
<td align="left" valign="top">To assess changes in gene transcription of fat and muscle tissue with acarbose treatment</td>
<td align="left" valign="top">Acarbose</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref196">196</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT04156048</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">110</td>
<td align="left" valign="top">Intrinsic Aging of Skin</td>
<td align="left" valign="top">To discover function of retinol on skin in aged individuals</td>
<td align="left" valign="top">Retinol</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref197">197</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT01333644</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">270</td>
<td align="left" valign="top">HIV infection, Cardiovascular disease, Inflammation</td>
<td align="left" valign="top">To study the role of inflammation and aging in HIV-associated cardiovascular complications</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref198">198</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT05190432</td>
<td align="left" valign="top">Active, not recruiting</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">90</td>
<td align="left" valign="top">Antioxidative stress, Cold, Influenza, Aging, Inflammation</td>
<td align="left" valign="top">To study the effect of Taxifolin and Ergothioneine on immune systems in healthy population</td>
<td align="left" valign="top">Taxifolin 250&#x2009;mg/day and Ergothioneine 80&#x2009;mg/day</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref199">199</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT05053282</td>
<td align="left" valign="top">Unknown status</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">60</td>
<td align="left" valign="top">Aging</td>
<td align="left" valign="top">To assess the role of endurance exercise on regulation of circadian rhythm and physiology in aged individuals</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref200">200</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT06091969</td>
<td align="left" valign="top">Not yet recruiting</td>
<td align="left" valign="top">Phase 2</td>
<td align="center" valign="top">64</td>
<td align="left" valign="top">Male fertility</td>
<td align="left" valign="top">To study nutraceutical supplementation for male subfertility</td>
<td align="left" valign="top">Fertility enhancer, FE daily for 3&#x2009;months</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref201">201</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT05008770</td>
<td align="left" valign="top">Recruiting</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">110</td>
<td align="left" valign="top">Sarcopenia</td>
<td align="left" valign="top">To evaluate musculoskeletal complications in aged individuals as a result of sarcopenia</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref202">202</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT05798637</td>
<td align="left" valign="top">Recruiting</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">200</td>
<td align="left" valign="top">Coronary artery disease (CAD), T2DM and AD</td>
<td align="left" valign="top">To evaluate frailty associated inflammation in aged individuals and to study the role of blood platelets</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref203">203</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT06082362</td>
<td align="left" valign="top">Recruiting</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">350</td>
<td align="left" valign="top">Male Infertility</td>
<td align="left" valign="top">To personalized key markers of chronic inflammation and early aging in infertile men</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref204">204</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">NCT04691986</td>
<td align="left" valign="top">Recruiting</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">144</td>
<td align="left" valign="top">Sarcopenia, NAD contraception, Muscle quantity and NAD+ content</td>
<td align="left" valign="top">To study the aftermath of NR (nictotinamide roboside) on functional ability and physiology of muscle tissue in elderly</td>
<td align="left" valign="top">NR supplementation at 1,000&#x2009;mg/day</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref205">205</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>Adapted from <ext-link xlink:href="http://www.clinicaltrials.gov" ext-link-type="uri">www.clinicaltrials.gov</ext-link> (<xref ref-type="bibr" rid="ref176">176</xref>).</p>
</table-wrap-foot>
</table-wrap>
<table-wrap position="float" id="tab3">
<label>Table 3</label>
<caption>
<p>Clinical trials including RNA studies in aging and inflammation.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Clinical Trial Registry</th>
<th align="left" valign="top">Registry ID</th>
<th align="left" valign="top">Trial status</th>
<th align="left" valign="top">Trial phase</th>
<th align="center" valign="top">Participants (<italic>n</italic>)</th>
<th align="left" valign="top">Medical complications</th>
<th align="left" valign="top">Objective of the trial</th>
<th align="left" valign="top">Dose used</th>
<th align="center" valign="top">References</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Europe</td>
<td align="left" valign="top">2021&#x2013;001654-65</td>
<td align="left" valign="top">Ongoing</td>
<td align="left" valign="top">Phase 2</td>
<td align="center" valign="top">&#x2013;</td>
<td align="left" valign="top">Chronic obstructive pulmonary disease (COPD)</td>
<td align="left" valign="top">To study the of course of action of drug itepekimab on airway-related inflammation treated with COPD</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref177">177</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Europe</td>
<td align="left" valign="top">2015&#x2013;002682-30</td>
<td align="left" valign="top">Completed</td>
<td align="left" valign="top">Phase 4</td>
<td align="center" valign="top">&#x2013;</td>
<td align="left" valign="top">Aging-related inflammation in HIV patients</td>
<td align="left" valign="top">To investigate the difference in IL-6 marker in patients treated with protease inhibitor and raltegravir which is used with or without the use of statins</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref206">206</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Brazil</td>
<td align="left" valign="top">U1111-1218&#x2013;7442</td>
<td align="left" valign="top">Recruitment completed</td>
<td align="left" valign="top">Phase 2</td>
<td align="center" valign="top">120</td>
<td align="left" valign="top">Gingivitis</td>
<td align="left" valign="top">To study the effectiveness of a long-term medication for gingival inflammation therapy</td>
<td align="left" valign="top">&#x2013;</td>
<td align="center" valign="top">(<xref ref-type="bibr" rid="ref207">207</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>Adapted from European Clinical Trial Registry (<xref ref-type="bibr" rid="ref177">177</xref>) and Brazilian Registry of Clinical Trials (<xref ref-type="bibr" rid="ref178">178</xref>).</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="sec28">
<label>7</label>
<title>Conclusion and future perspectives</title>
<p>Management of aging is difficult due to its progressive and irreversible nature, as well as the comorbidities associated with aging. However, the quality of biological aging can be improvised by recent advancements including intervention with nutraceuticals that can modulate the transcriptional activity of different genes implicated in aging and age-related complications. We have discussed the role(s) of <italic>Withania somnifera</italic> in modulating RNAs and alleviating the aging-associated comorbidities. Interestingly, Mart&#x00ED;nez-M&#x00E1;rmol et al. (<xref ref-type="bibr" rid="ref208">208</xref>) revealed that in brain organoids, long COVID prompted fusion among neurons and between neurons and glial cells. This fusion was attributed to a viral fusogen induced by the infection, driven by S-protein expression of SARS-CoV-2. These findings reveal how the nervous system is impacted by COVID-19 virus, potentially causing various neuropathologies. This indicates a potentially beneficial role for WS in long COVID management. However, the specific involvement of WS in the development of neuropathologies resulting from SARS-CoV-2 infection remains to be fully understood.</p>
<p>With the advent of new high-throughput &#x2018;omics&#x2019; technologies and updation of the reference human genome, we are now better placed to investigate aging at the transcriptional level. Indeed, the field of RNA biology has grown tremendously with the development of antisense oligonucleotides (<xref ref-type="bibr" rid="ref209">209</xref>, <xref ref-type="bibr" rid="ref210">210</xref>), aptamers (<xref ref-type="bibr" rid="ref211">211</xref>), RNA vaccines (<xref ref-type="bibr" rid="ref212">212</xref>), siRNAs (<xref ref-type="bibr" rid="ref213">213</xref>, <xref ref-type="bibr" rid="ref214">214</xref>) and CRISPR/Cas9 gene editing (<xref ref-type="bibr" rid="ref215">215</xref>). Further, the platforms used for RNA delivery are also expanding with nanocarriers (<xref ref-type="bibr" rid="ref216">216</xref>), lipid nanoparticles (<xref ref-type="bibr" rid="ref217">217</xref>) and exosomes (<xref ref-type="bibr" rid="ref218">218</xref>) being evaluated as novel drug delivery systems. Future avenues of research will likely include a deeper understanding of <italic>Withania</italic> effects on the transcriptome by the use of next-generation sequencing followed by formulation of <italic>Withania</italic> in a suitable dosage form to modulate the genome. In this review, we summarize the promising effects of <italic>Withania</italic> in ameliorating age-related molecular changes by encompassing both <italic>in vitro</italic> and <italic>in vivo</italic> studies. We have also summarized clinical trials studying modulation of RNAs in aging to provide current insights into possible interventions for aging-related complications. Moreover, we delineate key signaling pathways regulated by <italic>Withania</italic> compounds and key aging biomarkers in the aging/inflammation process. Taken together, given the modulation of key RNA markers in aging and inflammation pathways, there is tremendous potential for harnessing the beneficial effects of <italic>Withania</italic> for achieving healthy aging.</p>
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<sec sec-type="author-contributions" id="sec29">
<title>Author contributions</title>
<p>PS: Writing &#x2013; original draft. SA: Writing &#x2013; original draft. DMa: Writing &#x2013; original draft. SS: Writing &#x2013; original draft. DMe: Writing &#x2013; review &#x0026; editing. SN: Supervision, Conceptualization, Project administration, Writing &#x2013; review &#x0026; editing.</p>
</sec>
</body>
<back>
<sec sec-type="funding-information" id="sec30">
<title>Funding</title>
<p>The author(s) declare that no financial support was received for the research, authorship, and/or publication of this article.</p>
</sec>
<ack>
<p>The authors thank PhytoVeda Pvt. Ltd. for the support and Viridis Biopharma Pvt. Ltd. for electronic access to scientific databases.</p>
</ack>
<sec sec-type="COI-statement" id="sec31">
<title>Conflict of interest</title>
<p>PS, SA, DMa, SS, DMe, and SN were employed by PhytoVeda Pvt. Ltd. and Viridis Biopharma Pvt. Ltd., Mumbai, India.</p>
<p>The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.</p>
</sec>
<sec id="sec100" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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