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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Nutr.</journal-id>
<journal-title>Frontiers in Nutrition</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Nutr.</abbrev-journal-title>
<issn pub-type="epub">2296-861X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fnut.2021.645398</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Nutrition</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Association Between Dietary Patterns and Plasma Lipid Biomarker and Female Breast Cancer Risk: Comparison of Latent Class Analysis (LCA) and Factor Analysis (FA)</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Cao</surname> <given-names>Shang</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x02020;</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Liu</surname> <given-names>Linchen</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn003"><sup>&#x02020;</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Zhu</surname> <given-names>Qianrang</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Zhu</surname> <given-names>Zheng</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Zhou</surname> <given-names>Jinyi</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1451885/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Wei</surname> <given-names>Pingmin</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn003"><sup>&#x02021;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/999083/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Wu</surname> <given-names>Ming</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
<xref ref-type="author-notes" rid="fn003"><sup>&#x02021;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1073424/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Epidemiology and Health Statistics, Southeast University</institution>, <addr-line>Nanjing</addr-line>, <country>China</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Rheumatology, School of Medicine, Zhongda Hospital, Southeast University</institution>, <addr-line>Nanjing</addr-line>, <country>China</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Chronic Disease Control, Jiangsu Provincial Center for Disease Control and Prevention</institution>, <addr-line>Nanjing</addr-line>, <country>China</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Francesco Sofi, Universit&#x000E0; degli Studi di Firenze, Italy</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Firoozeh Hosseini-Esfahani, Shahid Beheshti University of Medical Sciences, Iran; Emmanouella Magriplis, Agricultural University of Athens, Greece</p></fn>
<corresp id="c001">&#x0002A;Correspondence: Ming Wu <email>mingwu&#x00040;seu.edu.cn</email></corresp>
<fn fn-type="other" id="fn001"><p>This article was submitted to Nutritional Epidemiology, a section of the journal Frontiers in Nutrition</p></fn>
<fn fn-type="equal" id="fn002"><p>&#x02020;These authors share first authorship</p></fn>
<fn fn-type="equal" id="fn003"><p>&#x02021;These authors have contributed equally to this work</p></fn></author-notes>
<pub-date pub-type="epub">
<day>09</day>
<month>12</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>8</volume>
<elocation-id>645398</elocation-id>
<history>
<date date-type="received">
<day>23</day>
<month>12</month>
<year>2020</year>
</date>
<date date-type="accepted">
<day>28</day>
<month>10</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2021 Cao, Liu, Zhu, Zhu, Zhou, Wei and Wu.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Cao, Liu, Zhu, Zhu, Zhou, Wei and Wu</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p><bold>Background:</bold> Diet research focuses on the characteristics of &#x0201C;dietary patterns&#x0201D; regardless of the statistical methods used to derive them. However, the solutions to these methods are both conceptually and statistically different.</p>
<p><bold>Methods:</bold> We compared factor analysis (FA) and latent class analysis (LCA) methods to identify the dietary patterns of participants in the Chinese Wuxi Exposure and Breast Cancer Study, a population-based case-control study that included 818 patients and 935 healthy controls. We examined the association between dietary patterns and plasma lipid markers and the breast cancer risk.</p>
<p><bold>Results:</bold> Factor analysis grouped correlated food items into five factors, while LCA classified the subjects into four mutually exclusive classes. For FA, we found that the <italic>Prudent</italic>-factor was associated with a lower risk of breast cancer [4th vs. 1st quartile: odds ratio (OR) for 0.70, 95% CI = 0.52, 0.95], whereas the <italic>Picky</italic>-factor was associated with a higher risk (4th vs. 1st quartile: OR for 1.35, 95% CI = 1.00, 1.81). For LCA, using the <italic>Prudent</italic>-class as the reference, the <italic>Picky</italic>-class has a positive association with the risk of breast cancer (OR for 1.42, 95% CI = 1.06, 1.90). The multivariate-adjusted model containing all of the factors was better than that containing all of the classes in predicting HDL cholesterol (<italic>p</italic> = 0.04), triacylglycerols (<italic>p</italic> = 0.03), blood glucose (<italic>p</italic> = 0.04), apolipoprotein A1 (<italic>p</italic> = 0.02), and high-sensitivity C-reactive protein (<italic>p</italic> = 0.02), but was weaker than that in predicting the breast cancer risk (<italic>p</italic> = 0.03).</p>
<p><bold>Conclusion:</bold> Factor analysis is useful for understanding which foods are consumed in combination and for studying the associations with biomarkers, while LCA is useful for classifying individuals into mutually exclusive subgroups and compares the disease risk between the groups.</p></abstract>
<kwd-group>
<kwd>dietary patterns</kwd>
<kwd>latent class analysis (LCA)</kwd>
<kwd>factor analysis (FA)</kwd>
<kwd>plasma lipid biomarkers</kwd>
<kwd>breast cancer</kwd>
</kwd-group>
<contract-num rid="cn001">2011/RFA/473</contract-num>
<contract-sponsor id="cn001">World Cancer Research Fund<named-content content-type="fundref-id">10.13039/501100000321</named-content></contract-sponsor>
<counts>
<fig-count count="3"/>
<table-count count="6"/>
<equation-count count="2"/>
<ref-count count="55"/>
<page-count count="12"/>
<word-count count="8575"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>The interest in dietary patterns is well-founded in nutritional epidemiology, in light of the limitation of the traditional single-nutrient approach (<xref ref-type="bibr" rid="B1">1</xref>&#x02013;<xref ref-type="bibr" rid="B6">6</xref>). Dietary patterns can integrate complex interactions of diet exposures and bypass problems generated due to multiple testing and a high correlation among these exposures (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B7">7</xref>). Due to the presence of dietary patterns, a relationship between diet and health outcomes is simplified and robust (<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B8">8</xref>, <xref ref-type="bibr" rid="B9">9</xref>).</p>
<p>Generally, two main ideas are used to derive dietary patterns, <italic>a priori</italic> methods by using a predefined dietary pattern and fitting the data into the indices, namely the diet quality index (DQI) (<xref ref-type="bibr" rid="B10">10</xref>&#x02013;<xref ref-type="bibr" rid="B12">12</xref>), or posterior methods by data-driven reduction techniques to explore dietary patterns, namely factor analysis (FA), principal component analysis (PCA), and cluster analysis (CA) (<xref ref-type="bibr" rid="B12">12</xref>, <xref ref-type="bibr" rid="B13">13</xref>). The dietary patterns derived from &#x0201C;<italic>a priori</italic>&#x0201D; method have a clear explanation in the biological sense, while the &#x0201C;posterior&#x0201D; methods can obtain more information.</p>
<p>In the &#x0201C;posterior&#x0201D; methods, FA simplifies the diet data into dietary patterns based on the correlation between foods. It postulates that the created statistical model can explain this correlation through a limited number of underlying factors, and give factor scores to individuals for all the derived factors (<xref ref-type="bibr" rid="B13">13</xref>, <xref ref-type="bibr" rid="B14">14</xref>). PCA and FA are closely related, the main difference is that FA assumes a certain statistical model for the existing data sets, while PCA does not rely on statistical assumptions and is mainly a mathematical method (<xref ref-type="bibr" rid="B15">15</xref>). CA simplifies the diet data into dietary patterns based on the differences of individuals in the mean dietary intake, and each individual belongs to only one cluster (<xref ref-type="bibr" rid="B13">13</xref>, <xref ref-type="bibr" rid="B16">16</xref>). Recently, a novel CA method, latent class analysis (LCA) originating from psychology (<xref ref-type="bibr" rid="B17">17</xref>, <xref ref-type="bibr" rid="B18">18</xref>), has been used in nutritional epidemiology (<xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B20">20</xref>). LCA is similar to a non-hierarchical clustering analysis, but LCA is a model-based clustering method not a partition optimized based on numerical criteria (<xref ref-type="bibr" rid="B21">21</xref>). Because LCA relaxes the strict assumptions on conditional independence and the same error variance of all outcomes in clustering, it shows a better model fit (<xref ref-type="bibr" rid="B19">19</xref>). The main difference in concepts between FA and LCA is based on &#x0201C;person-centered&#x0201D; or &#x0201C;variable-oriented&#x0201D; [(<xref ref-type="bibr" rid="B22">22</xref>); <xref ref-type="fig" rid="F1">Figure 1</xref>]. FA explains the correlations between many observed variables through few underlying continuous latent variables. LCA classifies participants into mutually exclusive groups, rather than a joint classification of the factors (<xref ref-type="bibr" rid="B23">23</xref>).</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Differences in technical processing between the latent class analysis (LCA) and factor analysis (FA). <bold>(A)</bold> Data structure; <bold>(B)</bold> FA is a variable-oriented data reduction technique; <bold>(C)</bold> LCA is a person-centered classification technique. I, individuals; F, food items.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnut-08-645398-g0001.tif"/>
</fig>
<p>However, most diet studies focus on the characteristics of &#x0201C;dietary patterns,&#x0201D; such as the &#x0201C;<italic>Western</italic>&#x0201D; or &#x0201C;<italic>Prudent</italic>&#x0201D; dietary pattern, and regardless of what statistical methods are used to derive them. The effects are combined based only on the term of dietary pattern in some meta-analyses studies (<xref ref-type="bibr" rid="B24">24</xref>, <xref ref-type="bibr" rid="B25">25</xref>). In fact, these approaches are both conceptually and technically different (<xref ref-type="bibr" rid="B4">4</xref>). When applied indiscriminately to the studies of associations with health outcomes, it may affect the reliability and generality of the results. In addition, the relationship between dietary effects, plasma lipids, and the breast cancer risk is complex, plasma lipids and lipoprotein are influenced by weight and diet and may be related to breast cancer risk factors. For example, the higher mammography density is considered to be a strong risk factor for breast cancer (<xref ref-type="bibr" rid="B26">26</xref>), which is related to increased levels of HDL-C and decreased levels of LDL-C (<xref ref-type="bibr" rid="B27">27</xref>). Some prospective clinical research suggested that high levels of TC and HDL-C increased the incidence of breast cancer (<xref ref-type="bibr" rid="B28">28</xref>&#x02013;<xref ref-type="bibr" rid="B30">30</xref>). However, the conclusion is not consistent. A recent meta-analysis of the association between blood lipid levels and female breast cancer implicated no significant differences in the levels of total cholesterol, low-density lipoprotein cholesterol between cases and controls (<xref ref-type="bibr" rid="B31">31</xref>). Therefore, a direct comparison of methods of deriving dietary patterns is necessary, which would be useful to unravel the obscured relationship between diet, lipid profile levels, and the disease status and in moving the field forward. This study aimed to compare the dietary patterns derived from LCA and FA methods and their relation to plasma lipid biomarkers and female breast cancer risk.</p>
</sec>
<sec sec-type="methods" id="s2">
<title>Methods</title>
<sec>
<title>Study Design and Subjects</title>
<p>Subjects came from a population-based case-control study involving biology, diet, lifestyle, and environmental factors impact on the risk of breast cancer in Asian women. All subjects were adult women and restricted to local residents who have lived in Wuxi for at least 5 years. All newly diagnosed female breast cancers (ICD code: C50) among local residents identified by cancer registries are eligible to be included as cases. Secondary and recurrent cancers will be excluded. Controls were derived from the local area as cases and will be 1:1 individually matched with cases by age (&#x000B1;2 years) and residence. As personal information such as name, address, date of birth, and sex for all residents is available in the local demographic information database, eligible controls are randomly identified from this database. For choosing each control, two additional subjects will be selected as a backup at the same time. When the first control could not be interviewed, an alternative will be enrolled in the study. The selection procedure will be repeated until an eligible subject is interviewed. A total of 1,042 eligible breast cancer cases and 1,042 health controls were identified during the study period. About 818 cases and 935 controls agreed to participate, with a frequency match (cases and controls have the same distributions over age and residence). We excluded 77 cases and 75 controls because of extreme values in total calorie intake (&#x0003C;500 or &#x0003E;5,000 kcal) and 46 cases and 56 controls missing the information on adjusting covariant variables. A total of 695 cases and 804 controls were finally included in this study. This study was conducted according to the guidelines laid down in the Declaration of Helsinki, and all procedures involving human subjects/patients were approved by the Jiangsu Center for Disease Control and Prevention ethical committee. Written informed consent was obtained from all subjects/patients.</p>
</sec>
<sec>
<title>Plasma Lipid Measurements</title>
<p>In the blood samples of all subjects, a series of plasma lipid biomarkers, including LDL cholesterol, HDL cholesterol, total cholesterol, triacylglycerols, blood glucose, apolipoprotein A1, apolipoprotein B, and high-sensitivity C-reactive protein, were measured. Anantecubital venous blood sample was drawn from the study subjects after they had fasted overnight. Blood glucose, concentrations of triacylglycerols, and total cholesterol were measured by using an enzymatic method (GPO-POD method and GHOD-POD method), HDL cholesterol and LDL cholesterol were measured by a homogeneous enzymatic method, apolipoprotein A1, apolipoprotein B, and high-sensitivity C-reactive protein were measured by an immunoturbidimetric method, and all plasma lipid measurements were done using the Roche Chemistry Analyzer (cobas c701).</p>
</sec>
<sec>
<title>Dietary Assessment</title>
<p>The diet was measured by a validated, semi-quantitative food frequency questionnaire (FFQ), which included 149 food items. The 149 food items can be further classified into 18 predefined food groups based on similarities in nutrient profile and culinary usage. A detailed description and reliability verification of the FFQ can be found in the previously published study (<xref ref-type="bibr" rid="B32">32</xref>). Total energy intake is based on the Chinese Food Composition Database (2018, 6th version).</p>
</sec>
<sec>
<title>Dietary Pattern Analysis</title>
<p><italic>Latent class analysis</italic>: LCA for dietary pattern derivation is described briefly as follows:</p>
<p>Latent class analysis is a conditional Gaussian finite mixture model [FMM; (<xref ref-type="bibr" rid="B19">19</xref>)]. The identification of dietary patterns can be considered as there are subgroups who are distinguished by their dietary profiles in the population and have different food consumption probability distributions. FMM is particularly suited to the problem of identifying the subgroups that are defined in this manner. In FMM, the overall population probability density is expressed as a finite sum of well-defined component densities, with each density representing a subgroup.</p>
<p>An FMM can be written as</p>
<disp-formula id="E1"><label>(1)</label><mml:math id="M1"><mml:mtable class="eqnarray" columnalign="right center left"><mml:mtr><mml:mtd><mml:mi>f</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mtext>y</mml:mtext></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>|</mml:mo><mml:mi>&#x003B8;</mml:mi></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mstyle displaystyle="true"><mml:msubsup><mml:mrow><mml:mo>&#x02211;</mml:mo></mml:mrow><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mi>K</mml:mi></mml:mrow></mml:msubsup></mml:mstyle><mml:msub><mml:mrow><mml:mi>&#x003C0;</mml:mi></mml:mrow><mml:mrow><mml:mi>k</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mrow><mml:mi>f</mml:mi></mml:mrow><mml:mrow><mml:mi>k</mml:mi></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mtext>y</mml:mtext></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>|</mml:mo><mml:msub><mml:mrow><mml:mi>&#x003B8;</mml:mi></mml:mrow><mml:mrow><mml:mi>k</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
<p>In Equation (1), <italic>y</italic><sub><italic>i</italic></sub> is a vector of observations on <italic>J</italic> feature variables for the <italic>i</italic>th subject, <italic>K</italic> is the chosen number of subgroups, &#x003C0;<sub><italic>k</italic></sub> is the probability of subgroup membership (or mixing proportion) which sums to 1 over subgroups and &#x003B8; is the set of model parameters that are to be estimated. If the feature variables are continuous, it is usually assumed that the <italic>K</italic> probability densities <italic>f</italic><sub>1</sub>,&#x02026;,<italic>f</italic><sub><italic>k</italic></sub> are multivariate normal. The most general solution involves estimating a separate set of means, variances, and covariances for each component density, as well as the mixing proportions.</p>
<p>The details please refer to our previous study (<xref ref-type="bibr" rid="B33">33</xref>). The dietary classes derived from LCA adjusted the energy intake of each subject and were interpreted and named according to the conditional probabilities of food group intake, using controls only. The number of classes was determined by the Bayesian Information Criterion (BIC), Lo&#x02013;Mendel&#x02013;Rubin likelihood ratio (LMR) test, and entropy value (<xref ref-type="bibr" rid="B34">34</xref>, <xref ref-type="bibr" rid="B35">35</xref>). The dietary classes were derived from LCA.</p>
<p>Factor analysis: FA is the most commonly used method to derive dietary patterns, briefly described as follows.</p>
<p>The identification of dietary patterns in FA can be regarded as a problem of few latent variables to explain the correlation between many observed variables, which is achieved by dividing a covariance between the observed variables. These continuous explanatory latent variables are called &#x0201C;factors.&#x0201D;</p>
<p>Assuming that the intake of <italic>n</italic> subjects in <italic>P</italic> dietary variables <italic>X</italic><sub>1</sub>, <italic>X</italic><sub>2</sub>, &#x02026;, <italic>X</italic><sub><italic>P</italic></sub> is measured, where <italic>i</italic> variables can be written as a linear combination based on <italic>m</italic> factors <italic>F</italic><sub>1</sub>, <italic>F</italic><sub>2</sub>, &#x02026;, <italic>F</italic><sub><italic>m</italic></sub>. When <italic>m</italic>&#x0003C; <italic>p</italic>, a FA can be expressed in Equation (2) as</p>
<disp-formula id="E2"><label>(2)</label><mml:math id="M2"><mml:mtable class="eqnarray" columnalign="right center left"><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mi>X</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mrow><mml:mi>a</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mn>1</mml:mn></mml:mrow></mml:msub><mml:msub><mml:mrow><mml:mi>F</mml:mi></mml:mrow><mml:mrow><mml:mn>1</mml:mn></mml:mrow></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:msub><mml:mrow><mml:mi>a</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mn>2</mml:mn></mml:mrow></mml:msub><mml:msub><mml:mrow><mml:mi>F</mml:mi></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:mo>&#x02026;</mml:mo><mml:mo>&#x0002B;</mml:mo><mml:msub><mml:mrow><mml:mi>a</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>m</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mrow><mml:mi>F</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msub><mml:mo>&#x0002B;</mml:mo><mml:msub><mml:mrow><mml:mi>e</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
<p><italic>a</italic><sub><italic>is</italic></sub> is the factor loading of the variable <italic>i</italic>, and <italic>e</italic><sub><italic>i</italic></sub> is the part of the variable <italic>X</italic><sub><italic>i</italic></sub> that cannot be &#x0201C;explained&#x0201D; by the factors.</p>
<p>We first performed an exploratory factor analysis (EFA) on 18 food groups using weighted least squares and derived the factors by orthogonal Varimax rotation. The number of factors left is based on the characteristic root and the variance interpretation. Next, we constructed a confirmatory factor analysis (CFA) model that only included food groups with the loading value &#x02265; 0.25 in EFA, allowing food groups to load on multiple factors. Both EFA and CFA analyses use controls only and adjust each subject&#x00027;s energy intake.</p>
</sec>
<sec>
<title>Statistical Analysis</title>
<p>To compare the characteristics of the dietary patterns derived from LCA and FA, we calculated consumption conditional probabilities and factor loadings for each food group and compared factor scores&#x00027; means (&#x000B1;SD) for each class.</p>
<p>To compare the association between the dietary patterns derived by LCA or FA and plasma lipid biomarkers, we used a multivariate-adjusted linear regression to examine individual associations between each class or each factor with each plasma lipid biomarker. Indicator variables (aka, dummy variables) were created for each class, while the factors remained as continuous variables (<italic>z-</italic>scores). A separate linear regression model was constructed for each individual class or factor for each plasma lipid biomarker (plasma lipid biomarker as an outcome variable). Each dietary pattern (derived by LCA or FA) will be tested in eight separate regression models to examine the associations between a dietary pattern and LDL cholesterol, HDL cholesterol, total cholesterol, triacylglycerols, blood glucose, apolipoprotein A1, apolipoprotein B, and high-sensitivity C-reactive protein, respectively. The multi-regression analysis of each dietary pattern derived by FA or LCA will be performed two times. We will first adjust age (age at diagnosis for cases or enrollment for controls, by years) and BMI (kg/m<sup>2</sup>) and further adjust area (urban and rural), education (ordered as illiterate and primary, middle, and high school, University and above), smoking (no or yes: including smoking and second-hand smoking &#x02265; 3 day/week), moderate physical activity (min/day), oral contraceptive use (no or yes: current use or ever use), hormone replacement therapy (no or yes: current use or ever use), age at menarche (by years), age at first full-term delivery (by years), parity (ordered as 0, 1, 2, or &#x02265;3), family history of breast cancer (no or yes: in a first-degree relative), history of benign breast disease (no or yes: including lactation mastitis, plasma cell mastitis, cyclomastopathy, fibroadenoma of breast, and galactocele), breastfeeding (no or yes), height (in cm), energy intake (kcal/extra-administrative) and menopausal status (premenopausal, postmenopausal, postmenopausal as the absence of menstruation in the past 12 months). To further compare dietary patterns in relation to health outcomes (included plasma lipid biomarkers and breast cancer risk), we built a linear regression model that included all the factors and another linear regression model that included all the classes and then compared them using <italic>Pitman&#x00027;s</italic> test to see which solution better predicted the outcomes.</p>
<p>To examine the association between dietary patterns and the disease risk, we calculated standardized factor scores and Bayesian posterior probability for each subject, so that all the subjects were assigned with a score for each dietary pattern, and all the subjects were assigned with a latent class, based on their FFQ intake. The logistic regression models were used to estimate the odds ratio (OR) and their 95% CIs. For FA, because the factors are not mutually exclusive and the factor scores are continuous variables, we divided the factor score of each dietary pattern into quartiles and examined their association with the breast cancer risk, with a reference of the lowest quartile. For LCA, because the classes are mutually exclusive, we estimate the risk of breast cancer directly for mutually exclusive classes compared with a reference class.</p>
<p>Latent class analysis and FA were conducted using MPLUS (V8.3; Muth&#x000E9;n &#x00026; Muth&#x000E9;n, Los Angeles, CA, USA) (<xref ref-type="bibr" rid="B36">36</xref>), and other statistical analyses were conducted using R version 4.0.2 (The R Project for Statistical Computing, USA; <ext-link ext-link-type="uri" xlink:href="https://www.r-project.org/">https://www.r-project.org/</ext-link>).</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec>
<title>Dietary Derived by LCA</title>
<p>The dietary patterns derived from LCA were described in our previous studies (<xref ref-type="bibr" rid="B33">33</xref>). As described briefly below, latent class models were fitted for two to six classes, and the four classes were chosen. The food consumption conditional probability from the selected food groups for the four classes was presented in <xref ref-type="table" rid="T1">Table 1</xref>. We named the classes as follows: <italic>Prudent, Chinese traditional</italic> (short for <italic>Chinese</italic> below)<italic>, Western</italic>, and <italic>Picky</italic>. The <italic>Prudent</italic> class was characterized by a high probability of consuming healthy foods like cereals, aquatic products, fruits, vegetables, soy foods, and nuts. Compared with the other three classes, women in the <italic>Picky</italic>-class were characterized by higher extreme probabilities of non-consumption of specific foods.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Food consumption level conditional probabilities of dietary pattern classes, latent class analysis (LCA)<xref ref-type="table-fn" rid="TN1"><sup>a</sup></xref><sup>,</sup> <xref ref-type="table-fn" rid="TN2"><sup>b</sup></xref>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th/>
<th valign="top" align="center" colspan="2"><bold>Class 1:</bold></th>
<th valign="top" align="center" colspan="2"><bold>Class 2:</bold></th>
<th valign="top" align="center" colspan="2"><bold>Class 3:</bold></th>
<th valign="top" align="center" colspan="2"><bold>Class 4:</bold></th>
</tr>
<tr>
<th/>
<th valign="top" align="center" colspan="2" style="border-bottom: thin solid #000000;"><italic><bold>Prudent</bold></italic></th>
<th valign="top" align="center" colspan="2" style="border-bottom: thin solid #000000;"><italic><bold>Western</bold></italic></th>
<th valign="top" align="center" colspan="2" style="border-bottom: thin solid #000000;"><italic><bold>Chinese</bold></italic></th>
<th valign="top" align="center" colspan="2" style="border-bottom: thin solid #000000;"><italic><bold>Picky</bold></italic></th>
</tr>
<tr>
<th valign="top" align="left"><bold>Food group</bold></th>
<th valign="top" align="center"><bold>High</bold></th>
<th valign="top" align="center"><bold>No</bold></th>
<th valign="top" align="center"><bold>High</bold></th>
<th valign="top" align="center"><bold>No</bold></th>
<th valign="top" align="center"><bold>High</bold></th>
<th valign="top" align="center"><bold>No</bold></th>
<th valign="top" align="center"><bold>High</bold></th>
<th valign="top" align="center"><bold>No</bold></th>
</tr>
<tr>
<th/>
<th valign="top" align="center"><bold>consumption</bold></th>
<th valign="top" align="center"><bold>consumption</bold></th>
<th valign="top" align="center"><bold>consumption</bold></th>
<th valign="top" align="center"><bold>consumption</bold></th>
<th valign="top" align="center"><bold>consumption</bold></th>
<th valign="top" align="center"><bold>consumption</bold></th>
<th valign="top" align="center"><bold>consumption</bold></th>
<th valign="top" align="center"><bold>consumption</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Rice/Flour</td>
<td valign="top" align="center">0.08</td>
<td valign="top" align="center">0.25</td>
<td valign="top" align="center">0.16</td>
<td valign="top" align="center">0.40</td>
<td valign="top" align="center">0.10</td>
<td valign="top" align="center">0.26</td>
<td valign="top" align="center">0.24</td>
<td valign="top" align="center">0.17</td>
</tr>
<tr>
<td valign="top" align="left">Cereals</td>
<td valign="top" align="center">0.35</td>
<td valign="top" align="center">0.24</td>
<td valign="top" align="center">0.28</td>
<td valign="top" align="center">0.15</td>
<td valign="top" align="center">0.25</td>
<td valign="top" align="center">0.12</td>
<td valign="top" align="center">0.17</td>
<td valign="top" align="center">0.56</td>
</tr>
<tr>
<td valign="top" align="left">Fried food</td>
<td valign="top" align="center">0.13</td>
<td valign="top" align="center">0.24</td>
<td valign="top" align="center">0.46</td>
<td valign="top" align="center">0.12</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.50</td>
<td valign="top" align="center">0.02</td>
<td valign="top" align="center">0.73</td>
</tr>
<tr>
<td valign="top" align="left">Meat</td>
<td valign="top" align="center">0.47</td>
<td valign="top" align="center">0.03</td>
<td valign="top" align="center">0.79</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">0.03</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.15</td>
<td valign="top" align="center">0.10</td>
</tr>
<tr>
<td valign="top" align="left">Poultry</td>
<td valign="top" align="center">0.46</td>
<td valign="top" align="center">0.26</td>
<td valign="top" align="center">0.71</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.29</td>
<td valign="top" align="center">0.05</td>
<td valign="top" align="center">0.23</td>
<td valign="top" align="center">0.36</td>
</tr>
<tr>
<td valign="top" align="left">Aquatics</td>
<td valign="top" align="center">0.56</td>
<td valign="top" align="center">0.02</td>
<td valign="top" align="center">0.55</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.29</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">0.27</td>
<td valign="top" align="center">0.13</td>
</tr>
<tr>
<td valign="top" align="left">Eggs</td>
<td valign="top" align="center">0.05</td>
<td valign="top" align="center">0.25</td>
<td valign="top" align="center">0.22</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">0.06</td>
<td valign="top" align="center">0.03</td>
<td valign="top" align="center">0.07</td>
<td valign="top" align="center">0.36</td>
</tr>
<tr>
<td valign="top" align="left">Milk</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">0.47</td>
<td valign="top" align="center">0.04</td>
<td valign="top" align="center">0.26</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">0.38</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">0.85</td>
</tr>
<tr>
<td valign="top" align="left">Fruits</td>
<td valign="top" align="center">0.25</td>
<td valign="top" align="center">0.04</td>
<td valign="top" align="center">0.18</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.30</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">0.14</td>
<td valign="top" align="center">0.32</td>
</tr>
<tr>
<td valign="top" align="left">Vegetables</td>
<td valign="top" align="center">0.26</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">0.27</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.17</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.37</td>
<td valign="top" align="center">0.04</td>
</tr>
<tr>
<td valign="top" align="left">Soy foods</td>
<td valign="top" align="center">0.40</td>
<td valign="top" align="center">0.17</td>
<td valign="top" align="center">0.49</td>
<td valign="top" align="center">0.09</td>
<td valign="top" align="center">0.25</td>
<td valign="top" align="center">0.06</td>
<td valign="top" align="center">0.18</td>
<td valign="top" align="center">0.38</td>
</tr>
<tr>
<td valign="top" align="left">Nuts</td>
<td valign="top" align="center">0.26</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.25</td>
<td valign="top" align="center">0.08</td>
<td valign="top" align="center">0.14</td>
<td valign="top" align="center">0.15</td>
<td valign="top" align="center">0.11</td>
<td valign="top" align="center">0.67</td>
</tr>
<tr>
<td valign="top" align="left">Cakes</td>
<td valign="top" align="center">0.23</td>
<td valign="top" align="center">0.51</td>
<td valign="top" align="center">0.33</td>
<td valign="top" align="center">0.15</td>
<td valign="top" align="center">0.13</td>
<td valign="top" align="center">0.31</td>
<td valign="top" align="center">0.10</td>
<td valign="top" align="center">0.76</td>
</tr>
<tr>
<td valign="top" align="left">SSB</td>
<td valign="top" align="center">0.02</td>
<td valign="top" align="center">0.98</td>
<td valign="top" align="center">0.25</td>
<td valign="top" align="center">0.75</td>
<td valign="top" align="center">0.11</td>
<td valign="top" align="center">0.89</td>
<td valign="top" align="center">0.05</td>
<td valign="top" align="center">0.95</td>
</tr>
<tr>
<td valign="top" align="left">Fresh juice</td>
<td valign="top" align="center">0.06</td>
<td valign="top" align="center">0.94</td>
<td valign="top" align="center">0.27</td>
<td valign="top" align="center">0.73</td>
<td valign="top" align="center">0.11</td>
<td valign="top" align="center">0.89</td>
<td valign="top" align="center">0.02</td>
<td valign="top" align="center">0.98</td>
</tr>
<tr>
<td valign="top" align="left">Soft drink</td>
<td valign="top" align="center">0.06</td>
<td valign="top" align="center">0.94</td>
<td valign="top" align="center">0.47</td>
<td valign="top" align="center">0.53</td>
<td valign="top" align="center">0.18</td>
<td valign="top" align="center">0.82</td>
<td valign="top" align="center">0.07</td>
<td valign="top" align="center">0.93</td>
</tr>
<tr>
<td valign="top" align="left">Pickled foods</td>
<td valign="top" align="center">0.12</td>
<td valign="top" align="center">0.44</td>
<td valign="top" align="center">0.25</td>
<td valign="top" align="center">0.19</td>
<td valign="top" align="center">0.16</td>
<td valign="top" align="center">0.32</td>
<td valign="top" align="center">0.24</td>
<td valign="top" align="center">0.33</td>
</tr>
<tr>
<td valign="top" align="left">Coffee</td>
<td valign="top" align="center">0.08</td>
<td valign="top" align="center">0.92</td>
<td valign="top" align="center">0.26</td>
<td valign="top" align="center">0.74</td>
<td valign="top" align="center">0.08</td>
<td valign="top" align="center">0.92</td>
<td valign="top" align="center">0.02</td>
<td valign="top" align="center">0.99</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TN1">
<label>a</label>
<p><italic>Classes were derived using LCA on 18 food groups based on 804 controls</italic>.</p></fn>
<fn id="TN2">
<label>b</label>
<p><italic>Conditional probabilities of food group consumption were categorized into four levels: tertiles of non-zero consumption and no consumption (calculated from controls). Because there were &#x0003C;20% of women consumed sugar strengthened beverage (SSB), fresh juice, soft drink, or coffee, we set the consumption of these foods as binary variables (consumed or no). While rice/flour was consumed almost ubiquitously, there were only tertiles of consumption and no non-consumption category</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec>
<title>Dietary Derived by FA</title>
<p>According to the scree plot and characteristic root from EFA (the first six eigen values were 2.57, 1.66, 1.44, 1.29, 1.18, and 1.01), we extracted five factors, which explain &#x0007E;45.21% of the total variance. Factor 1 with a high factor loading in cereals, aquatics, milk, fruits, soy foods, nuts, cakes, and fresh juice, named as <italic>Prudent</italic>-factor; Factor 2 with a high factor loading in cakes, sugar strengthened beverage (SSB), fresh juice, soft drinks, pickled foods, and coffee, named as <italic>Sugar</italic>-factor. Factor 3 with a high factor loading in fried foods and red meat, named as <italic>Western</italic>-factor; Factor 4 with a high factor loading in poultry, eggs, and soy foods, named as <italic>Chinese traditional</italic>-factor (short for <italic>Chinese</italic>); Factor 5 with a high factor loading in vegetables, soy foods, and pickled foods, named as <italic>Picky</italic>-factor.</p>
<p>The CFA model only included food groups with loading &#x02265;0.25 in EFA. The factor loadings from EFA and CFA were almost similar except for coffee for <italic>Picky</italic>-factor and fresh juice for <italic>Sugar</italic>-factor (<xref ref-type="table" rid="T2">Table 2</xref>). Therefore, we kept the names given from EFA for the dietary patterns assessed by CFA. After excluding food groups with the factor loading &#x0003C;0.25, the model was more concise and the goodness of fit did not decrease (results not shown). We examined the overall correlations among the five factors and found a significant difference (<italic>p</italic> &#x0003C; 0.001) compared to the hypothesis of being zero (for details see <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 1</xref>).</p>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>Selected exploratory and confirmatory factor loadings for the five-factor model, factor analysis (FA)<xref ref-type="table-fn" rid="TN3"><sup>a</sup></xref>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th/>
<th valign="top" align="center" colspan="5" style="border-bottom: thin solid #000000;"><bold>EFA</bold></th>
<th valign="top" align="center" colspan="5" style="border-bottom: thin solid #000000;"><bold>CFA<xref ref-type="table-fn" rid="TN4"><sup>b</sup></xref></bold></th>
</tr>
<tr>
<th valign="top" align="left"><bold>Food group</bold></th>
<th valign="top" align="center"><bold>Factor 1:</bold></th>
<th valign="top" align="center"><bold>Factor 2:</bold></th>
<th valign="top" align="center"><bold>Factor 3:</bold></th>
<th valign="top" align="center"><bold>Factor 4:</bold></th>
<th valign="top" align="center"><bold>Factor 5:</bold></th>
<th valign="top" align="center"><bold>Factor 1:</bold></th>
<th valign="top" align="center"><bold>Factor 2:</bold></th>
<th valign="top" align="center"><bold>Factor 3:</bold></th>
<th valign="top" align="center"><bold>Factor 4:</bold></th>
<th valign="top" align="center"><bold>Factor 5:</bold></th>
</tr>
<tr>
<th/>
<th valign="top" align="center"><bold><italic>Prudent</italic></bold></th>
<th valign="top" align="center"><bold><italic>Sugar</italic></bold></th>
<th valign="top" align="center"><bold><italic>Western</italic></bold></th>
<th valign="top" align="center"><bold><italic>Chinese</italic></bold></th>
<th valign="top" align="center"><bold><italic>Picky</italic></bold></th>
<th valign="top" align="center"><bold><italic>Prudent</italic></bold></th>
<th valign="top" align="center"><bold><italic>Sugar</italic></bold></th>
<th valign="top" align="center"><bold><italic>Western</italic></bold></th>
<th valign="top" align="center"><bold><italic>Chinese</italic></bold></th>
<th valign="top" align="center"><bold><italic>Picky</italic></bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Rice/Flour</td>
<td valign="top" align="center">&#x02212;0.12</td>
<td valign="top" align="center">&#x02212;0.02</td>
<td valign="top" align="center">&#x02212;0.02</td>
<td valign="top" align="center">0.03</td>
<td valign="top" align="center">0.46</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">0.54</td>
</tr>
<tr>
<td valign="top" align="left">Cereals</td>
<td valign="top" align="center">0.45</td>
<td valign="top" align="center">&#x02212;0.11</td>
<td valign="top" align="center">&#x02212;0.06</td>
<td valign="top" align="center">0.07</td>
<td valign="top" align="center">0.07</td>
<td valign="top" align="center">0.35</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Fried food</td>
<td valign="top" align="center">0.10</td>
<td valign="top" align="center">0.17</td>
<td valign="top" align="center">0.78</td>
<td valign="top" align="center">0.03</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">0.78</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Meat</td>
<td valign="top" align="center">0.03</td>
<td valign="top" align="center">0.04</td>
<td valign="top" align="center">0.88</td>
<td valign="top" align="center">0.24</td>
<td valign="top" align="center">0.05</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">0.89</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Poultry</td>
<td valign="top" align="center">0.08</td>
<td valign="top" align="center">0.04</td>
<td valign="top" align="center">0.10</td>
<td valign="top" align="center">0.92</td>
<td valign="top" align="center">&#x02212;0.18</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">0.61</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Aquatics</td>
<td valign="top" align="center">0.24</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">0.10</td>
<td valign="top" align="center">0.13</td>
<td valign="top" align="center">&#x02212;0.01</td>
<td valign="top" align="center">0.30</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Eggs</td>
<td valign="top" align="center">0.20</td>
<td valign="top" align="center">0.15</td>
<td valign="top" align="center">0.12</td>
<td valign="top" align="center">0.41</td>
<td valign="top" align="center">0.08</td>
<td/>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">0.64</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Milk</td>
<td valign="top" align="center">0.48</td>
<td valign="top" align="center">0.10</td>
<td valign="top" align="center">0.03</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">&#x02212;0.23</td>
<td valign="top" align="center">0.49</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Fruits</td>
<td valign="top" align="center">0.48</td>
<td valign="top" align="center">&#x02212;0.08</td>
<td valign="top" align="center">&#x02212;0.02</td>
<td valign="top" align="center">0.07</td>
<td valign="top" align="center">&#x02212;0.16</td>
<td valign="top" align="center">0.43</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Vegetables</td>
<td valign="top" align="center">0.02</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">0.04</td>
<td valign="top" align="center">&#x02212;0.07</td>
<td valign="top" align="center">0.41</td>
<td/>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">0.35</td>
</tr>
<tr>
<td valign="top" align="left">Soy foods</td>
<td valign="top" align="center">0.32</td>
<td valign="top" align="center">0.13</td>
<td valign="top" align="center">0.09</td>
<td valign="top" align="center">0.26</td>
<td valign="top" align="center">0.25</td>
<td valign="top" align="center">0.33</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">0.29</td>
<td valign="top" align="center">0.30</td>
</tr>
<tr>
<td valign="top" align="left">Nuts</td>
<td valign="top" align="center">0.50</td>
<td valign="top" align="center">0.15</td>
<td valign="top" align="center">0.11</td>
<td valign="top" align="center">0.05</td>
<td valign="top" align="center">0.08</td>
<td valign="top" align="center">0.55</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Cakes</td>
<td valign="top" align="center">0.42</td>
<td valign="top" align="center">0.32</td>
<td valign="top" align="center">0.14</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">&#x02212;0.02</td>
<td valign="top" align="center">0.43</td>
<td valign="top" align="center">0.25</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">SSB</td>
<td valign="top" align="center">0.04</td>
<td valign="top" align="center">0.76</td>
<td valign="top" align="center">0.08</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">0.06</td>
<td/>
<td valign="top" align="center">0.72</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Fresh juice</td>
<td valign="top" align="center">0.48</td>
<td valign="top" align="center">0.31</td>
<td valign="top" align="center">&#x02212;0.04</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">&#x02212;0.20</td>
<td valign="top" align="center">0.56</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Soft drink</td>
<td valign="top" align="center">0.11</td>
<td valign="top" align="center">0.79</td>
<td valign="top" align="center">0.04</td>
<td valign="top" align="center">0.14</td>
<td valign="top" align="center">&#x02212;0.04</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">0.86</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
<tr>
<td valign="top" align="left">Pickled foods</td>
<td valign="top" align="center">&#x02212;0.09</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.04</td>
<td valign="top" align="center">0.12</td>
<td valign="top" align="center">0.24</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">0.27</td>
</tr>
<tr>
<td valign="top" align="left">Coffee</td>
<td valign="top" align="center">0.33</td>
<td valign="top" align="center">0.45</td>
<td valign="top" align="center">0.17</td>
<td valign="top" align="center">0.01</td>
<td valign="top" align="center">&#x02212;0.26</td>
<td valign="top" align="center">0.37</td>
<td valign="top" align="center">0.36</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">&#x02013;</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TN3">
<label>a</label>
<p><italic>Factors were derived using FA on 18 food groups based on 804 controls</italic>.</p></fn>
<fn id="TN4">
<label>b</label>
<p><italic>Food groups with factor loading &#x0003C;0.25 are excluded for simplicity</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec>
<title>Comparison Between LCA and FA</title>
<p>Latent class analysis and FA methods identified similar dietary patterns based on the same data sets, which have similar diet characteristics from the conditional probabilities of LCA and factor loadings of FA (<xref ref-type="table" rid="T1">Tables 1</xref>, <xref ref-type="table" rid="T2">2</xref>). Latent classes derived from LCA have higher factor scores on corresponding latent factors, as shown in <xref ref-type="fig" rid="F2">Figure 2</xref>. Besides, the <italic>Western</italic>-class also had the highest factor score for <italic>Sugar</italic>-factor. The <italic>Picky</italic>-class had the lowest factor score for <italic>Prudent</italic>-factor and also had the factor score less than zero for <italic>Western</italic>-factor, <italic>Chinese</italic>-factor, <italic>Prudent</italic>-factor, and <italic>Sugar</italic>-factor. Although the <italic>Prudent</italic>-class had higher means for the <italic>Prudent</italic>-factor score, the factor score between the <italic>Chinese</italic>-class and <italic>Western</italic>-class was not significantly different (results not shown).</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Factor scores&#x00027; means by latent class, four classes on five factor scores.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnut-08-645398-g0002.tif"/>
</fig>
</sec>
<sec>
<title>Dietary Patterns and Plasma Lipid Biomarkers</title>
<p>In the multivariate-adjusted regression models for the classes derived by LCA, individuals in the <italic>Western</italic>-class had higher total cholesterol (&#x003B2; = 0.23; <italic>p</italic> &#x0003C; 0.01), triacylglycerols (&#x003B2; = 0.28; <italic>p</italic> &#x0003C; 0.01), blood glucose (&#x003B2; = 0.29; <italic>p</italic> &#x0003C; 0.01), and apolipoprotein B (&#x003B2; = 0.08; <italic>p</italic> &#x0003C; 0.01) than those who are not in the <italic>Western</italic>-class. Individuals in the <italic>Picky</italic>-class had higher triacylglycerols (&#x003B2; = 0.23; <italic>p</italic> &#x0003C; 0.01) and blood glucose (&#x003B2; = 0.29; <italic>p</italic> &#x0003C; 0.01) than those who are not in the <italic>Picky</italic>-class (<xref ref-type="table" rid="T3">Table 3</xref>).</p>
<table-wrap position="float" id="T3">
<label>Table 3</label>
<caption><p>Association between dietary patterns (classes) and plasma lipid biomarkers, regression coefficients (&#x003B2;)<xref ref-type="table-fn" rid="TN5"><sup>a</sup></xref>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Dietary pattern<xref ref-type="table-fn" rid="TN9"><sup>e</sup></xref></bold></th>
<th valign="top" align="center"><bold>LDL cholesterol</bold></th>
<th valign="top" align="center"><bold>HDL cholesterol</bold></th>
<th valign="top" align="center"><bold>Total cholesterol</bold></th>
<th valign="top" align="center"><bold>Triacylglycerols</bold></th>
<th valign="top" align="center"><bold>Blood glucose</bold></th>
<th valign="top" align="center"><bold>Apolipoprotein A1</bold></th>
<th valign="top" align="center"><bold>Apolipoprotein B</bold></th>
<th valign="top" align="center"><bold>High-sensitivity C-reactive Protein</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" colspan="9"><bold>Class 1:</bold> <italic><bold>Prudent</bold></italic></td>
</tr>
<tr>
<td valign="top" align="left">Adjusted for age and BMI</td>
<td valign="top" align="left">&#x02212;0.01 (0.07)</td>
<td valign="top" align="left">0.02 (0.03)</td>
<td valign="top" align="left">&#x02212;0.05 (0.08)</td>
<td valign="top" align="center">&#x02212;0.07 (0.07)</td>
<td valign="top" align="left">&#x02212;0.11 (0.10)</td>
<td valign="top" align="left">&#x02212;0.00 (0.02)</td>
<td valign="top" align="left">&#x02212;0.02 (0.02)</td>
<td valign="top" align="left">&#x02212;0.03 (0.13)</td>
</tr>
<tr>
<td valign="top" align="left">Multivariate adjusted<xref ref-type="table-fn" rid="TN8"><sup>d</sup></xref></td>
<td valign="top" align="left">&#x02212;0.01 (0.07)</td>
<td valign="top" align="left">0.02 (0.03)</td>
<td valign="top" align="left">&#x02212;0.04 (0.08)</td>
<td valign="top" align="center">&#x02212;0.08 (0.07)</td>
<td valign="top" align="left">&#x02212;0.11 (0.10)</td>
<td valign="top" align="left">&#x02212;0.00 (0.02)</td>
<td valign="top" align="left">&#x02212;0.02 (0.02)</td>
<td valign="top" align="left">&#x02212;0.04 (0.14)</td>
</tr>
<tr>
<td valign="top" align="left" colspan="9"><bold>Class 2:</bold> <italic><bold>Western</bold></italic></td>
</tr>
<tr>
<td valign="top" align="left">Adjusted for age and BMI</td>
<td valign="top" align="left">0.15 (0.09)</td>
<td valign="top" align="left">&#x02212;0.03 (0.04)</td>
<td valign="top" align="left">0.22 (0.10)<xref ref-type="table-fn" rid="TN6"><sup>b</sup></xref></td>
<td valign="top" align="center">0.27 (0.09)<xref ref-type="table-fn" rid="TN7"><sup>c</sup></xref></td>
<td valign="top" align="left">0.26 (0.13)<xref ref-type="table-fn" rid="TN6"><sup>b</sup></xref></td>
<td valign="top" align="left">0.03 (0.02)</td>
<td valign="top" align="left">0.07 (0.03)<xref ref-type="table-fn" rid="TN7"><sup>c</sup></xref></td>
<td valign="top" align="left">0.03 (0.17)</td>
</tr>
<tr>
<td valign="top" align="left">Multivariate adjusted<xref ref-type="table-fn" rid="TN8"><sup>d</sup></xref></td>
<td valign="top" align="left">0.17 (0.09)</td>
<td valign="top" align="left">&#x02212;0.03 (0.04)</td>
<td valign="top" align="left">0.23 (0.10)<xref ref-type="table-fn" rid="TN6"><sup>b</sup></xref></td>
<td valign="top" align="center">0.28 (0.09)<xref ref-type="table-fn" rid="TN7"><sup>c</sup></xref></td>
<td valign="top" align="left">0.29 (0.13)<xref ref-type="table-fn" rid="TN6"><sup>b</sup></xref></td>
<td valign="top" align="left">0.03 (0.02)</td>
<td valign="top" align="left">0.08 (0.03)<xref ref-type="table-fn" rid="TN7"><sup>c</sup></xref></td>
<td valign="top" align="left">0.03 (0.17)</td>
</tr>
<tr>
<td valign="top" align="left" colspan="9"><bold>Class 3:</bold> <italic><bold>Chinese</bold></italic></td>
</tr>
<tr>
<td valign="top" align="left">Adjusted for age and BMI</td>
<td valign="top" align="left">0.06 (0.07)</td>
<td valign="top" align="left">0.03 (0.03)</td>
<td valign="top" align="left">0.04 (0.07)</td>
<td valign="top" align="center">&#x02212;0.10 (0.07)</td>
<td valign="top" align="left">&#x02212;0.17 (0.10)</td>
<td valign="top" align="left">0.01 (0.02)</td>
<td valign="top" align="left">0.01 (0.02)</td>
<td valign="top" align="left">0.01 (0.13)</td>
</tr>
<tr>
<td valign="top" align="left">Multivariate adjusted<xref ref-type="table-fn" rid="TN8"><sup>d</sup></xref></td>
<td valign="top" align="left">0.06 (0.07)</td>
<td valign="top" align="left">0.03 (0.03)</td>
<td valign="top" align="left">0.04 (0.07)</td>
<td valign="top" align="center">&#x02212;0.10 (0.07)</td>
<td valign="top" align="left">&#x02212;0.16 (0.10)</td>
<td valign="top" align="left">0.02 (0.02)</td>
<td valign="top" align="left">0.01 (0.02)</td>
<td valign="top" align="left">0.01 (0.13)</td>
</tr>
<tr>
<td valign="top" align="left" colspan="9"><bold>Class 4:</bold> <italic><bold>Picky</bold></italic></td>
</tr>
<tr>
<td valign="top" align="left">Adjusted for age and BMI</td>
<td valign="top" align="left">0.03 (0.08)</td>
<td valign="top" align="left">&#x02212;0.04 (0.03)</td>
<td valign="top" align="left">0.06 (0.08)</td>
<td valign="top" align="center">0.23 (0.07)<xref ref-type="table-fn" rid="TN7"><sup>c</sup></xref></td>
<td valign="top" align="left">0.27 (0.11)<xref ref-type="table-fn" rid="TN6"><sup>b</sup></xref></td>
<td valign="top" align="left">0.00 (0.02)</td>
<td valign="top" align="left">0.02 (0.02)</td>
<td valign="top" align="left">0.05 (0.15)</td>
</tr>
<tr>
<td valign="top" align="left">Multivariate adjusted<xref ref-type="table-fn" rid="TN8"><sup>d</sup></xref></td>
<td valign="top" align="left">0.04 (0.08)</td>
<td valign="top" align="left">&#x02212;0.03 (0.03)</td>
<td valign="top" align="left">0.07 (0.08)</td>
<td valign="top" align="center">0.23 (0.07)<xref ref-type="table-fn" rid="TN7"><sup>c</sup></xref></td>
<td valign="top" align="left">0.29 (0.11)<xref ref-type="table-fn" rid="TN6"><sup>b</sup></xref></td>
<td valign="top" align="left">0.00 (0.02)</td>
<td valign="top" align="left">0.02 (0.02)</td>
<td valign="top" align="left">0.06 (0.15)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TN5">
<label>a</label>
<p><italic>SE in parentheses</italic>.</p></fn>
<fn id="TN6">
<label>b</label>
<p><italic>p &#x0003C; 0.05</italic>.</p></fn>
<fn id="TN7">
<label>c</label>
<p><italic>p &#x0003C; 0.01</italic>.</p></fn>
<fn id="TN8">
<label>d</label>
<p><italic>Multivariate models were adjusted for age, BMI, area, education, smoking, age at menarche, age at first full&#x02013;term delivery, parity, age at menopause, parity, family history of breast cancer, history of benign breast disease, use of HRT, use of oral contraceptives, breastfeeding, moderate physical activity, height, body mass index, total energy intake, and menopausal status</italic>.</p></fn>
<fn id="TN9">
<label>e</label>
<p><italic>Association between dietary patterns (classes) and plasma lipid biomarkers based on 804 controls</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
<p>In multivariate-adjusted regression models for the factors derived by FA, the <italic>Prudent</italic>-factor was inversely related to triacylglycerols (&#x003B2; = &#x02212;0.12; <italic>p</italic> &#x0003C; 0.01), blood glucose (&#x003B2; = &#x02212;0.13; <italic>p</italic> &#x0003C; 0.01), apolipoprotein B (&#x003B2; = &#x02212;0.02; <italic>p</italic> &#x0003C; 0.01), and high-sensitivity C-reactive protein (&#x003B2; = &#x02212;0.13; <italic>p</italic> &#x0003C; 0.01), whereas the <italic>Picky</italic>-factor was directly associated with triacylglycerols (&#x003B2; = 0.07; <italic>p</italic> &#x0003C; 0.05), apolipoprotein A1(&#x003B2; = 0.02; <italic>p</italic> &#x0003C; 0.05), and high-sensitivity C-reactive protein (&#x003B2; = 0.14; <italic>p</italic> &#x0003C; 0.05). Individuals in the <italic>Sugar</italic>-factor had higher LDL cholesterol (&#x003B2; = 0.09; <italic>p</italic> &#x0003C; 0.01), total cholesterol (&#x003B2; = 0.10; <italic>p</italic> &#x0003C; 0.01), triacylglycerols (&#x003B2; = 0.06; <italic>p</italic> &#x0003C; 0.01), blood glucose (&#x003B2; = 0.15; <italic>p</italic> &#x0003C; 0.01), and apolipoprotein B (&#x003B2; = 0.03; <italic>p</italic> &#x0003C; 0.01; <xref ref-type="table" rid="T4">Table 4</xref>). Because the factors are continuous variables (<italic>z-</italic>scores), &#x003B2; here means 1 mg/dl for a 1-unit increase in <italic>z-</italic>score.</p>
<table-wrap position="float" id="T4">
<label>Table 4</label>
<caption><p>Association between dietary patterns (factors) and plasma lipid biomarkers, regression coefficients (&#x003B2;)<xref ref-type="table-fn" rid="TN10"><sup>a</sup></xref>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Dietary pattern<xref ref-type="table-fn" rid="TN14"><sup>e</sup></xref></bold></th>
<th valign="top" align="center"><bold>LDL cholesterol</bold></th>
<th valign="top" align="center"><bold>HDL cholesterol</bold></th>
<th valign="top" align="center"><bold>Total cholesterol</bold></th>
<th valign="top" align="center"><bold>Triacylglycerols</bold></th>
<th valign="top" align="center"><bold>Blood glucose</bold></th>
<th valign="top" align="center"><bold>Apolipoprotein A1</bold></th>
<th valign="top" align="center"><bold>Apolipoprotein B</bold></th>
<th valign="top" align="center"><bold>High-sensitivity C-reactive Protein</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" colspan="9"><bold>Factor 1:</bold> <italic><bold>Prudent</bold></italic></td>
</tr>
<tr>
<td valign="top" align="left">Adjusted for age and BMI</td>
<td valign="top" align="center">&#x02212;0.04 (0.03)</td>
<td valign="top" align="center">0.03 (0.01)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
<td valign="top" align="center">&#x02212;0.03 (0.03)</td>
<td valign="top" align="center">&#x02212;0.12 (0.03)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">&#x02212;0.13 (0.05)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">0.00 (0.01)</td>
<td valign="top" align="center">&#x02212;0.02 (0.01)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
<td valign="top" align="center">&#x02212;0.13 (0.06)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
</tr>
<tr>
<td valign="top" align="left">Multivariate adjusted<xref ref-type="table-fn" rid="TN13"><sup>d</sup></xref></td>
<td valign="top" align="center">&#x02212;0.04 (0.03)</td>
<td valign="top" align="center">0.02 (0.01)</td>
<td valign="top" align="center">&#x02212;0.03 (0.03)</td>
<td valign="top" align="center">&#x02212;0.12 (0.03)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">&#x02212;0.13 (0.05)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">0.00 (0.01)</td>
<td valign="top" align="center">&#x02212;0.02 (0.01)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
<td valign="top" align="center">&#x02212;0.13 (0.06)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
</tr>
<tr>
<td valign="top" align="left" colspan="9"><bold>Factor 2:</bold> <italic><bold>Sugar</bold></italic></td>
</tr>
<tr>
<td valign="top" align="left">Adjusted for age and BMI</td>
<td valign="top" align="center">0.09 (0.03)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">&#x02212;0.02 (0.01)</td>
<td valign="top" align="center">0.10 (0.03)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">0.06 (0.03)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
<td valign="top" align="center">0.15 (0.05)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">0.01 (0.01)</td>
<td valign="top" align="center">0.03 (0.01)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">0.04 (0.06)</td>
</tr>
<tr>
<td valign="top" align="left">Multivariate adjusted<xref ref-type="table-fn" rid="TN13"><sup>d</sup></xref></td>
<td valign="top" align="center">0.09 (0.03)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">&#x02212;0.02 (0.01)</td>
<td valign="top" align="center">0.10 (0.03)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">0.06 (0.03)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
<td valign="top" align="center">0.15 (0.05)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">0.01 (0.01)</td>
<td valign="top" align="center">0.03 (0.01)<xref ref-type="table-fn" rid="TN12"><sup>c</sup></xref></td>
<td valign="top" align="center">0.02 (0.06)</td>
</tr>
<tr>
<td valign="top" align="left" colspan="9"><bold>Factor 3:</bold> <italic><bold>Western</bold></italic></td>
</tr>
<tr>
<td valign="top" align="left">Adjusted for age and BMI</td>
<td valign="top" align="center">&#x02212;0.03 (0.03)</td>
<td valign="top" align="center">&#x02212;0.01 (0.01)</td>
<td valign="top" align="center">0.00 (0.03)</td>
<td valign="top" align="center">0.05 (0.05)</td>
<td valign="top" align="center">&#x02212;0.01 (0.01)</td>
<td valign="top" align="center">&#x02212;0.01 (0.01)</td>
<td valign="top" align="center">0.05 (0.06)</td>
<td valign="top" align="center">0.05 (0.06)</td>
</tr>
<tr>
<td valign="top" align="left">Multivariate adjusted<xref ref-type="table-fn" rid="TN13"><sup>d</sup></xref></td>
<td valign="top" align="center">&#x02212;0.03 (0.03)</td>
<td valign="top" align="center">&#x02212;0.01 (0.01)</td>
<td valign="top" align="center">&#x02212;0.04 (0.03)</td>
<td valign="top" align="center">0.00 (0.03)</td>
<td valign="top" align="center">0.04 (0.05)</td>
<td valign="top" align="center">&#x02212;0.01 (0.01)</td>
<td valign="top" align="center">&#x02212;0.01 (0.01)</td>
<td valign="top" align="center">0.05 (0.06)</td>
</tr>
<tr>
<td valign="top" align="left" colspan="9"><bold>Factor 4:</bold> <italic><bold>Chinese</bold></italic></td>
</tr>
<tr>
<td valign="top" align="left">Adjusted for age and BMI</td>
<td valign="top" align="center">0.03 (0.03)</td>
<td valign="top" align="center">0.02 (0.01)</td>
<td valign="top" align="center">0.03 (0.04)</td>
<td valign="top" align="center">&#x02212;0.05 (0.03)</td>
<td valign="top" align="center">&#x02212;0.00 (0.05)</td>
<td valign="top" align="center">0.02 (0.01)</td>
<td valign="top" align="center">0.01 (0.01)</td>
<td valign="top" align="center">&#x02212;0.06 (0.06)</td>
</tr>
<tr>
<td valign="top" align="left">Multivariate adjusted<xref ref-type="table-fn" rid="TN13"><sup>d</sup></xref></td>
<td valign="top" align="center">0.02 (0.03)</td>
<td valign="top" align="center">0.02 (0.01)</td>
<td valign="top" align="center">0.02 (0.04)</td>
<td valign="top" align="center">&#x02212;0.05 (0.03)</td>
<td valign="top" align="center">&#x02212;0.01 (0.05)</td>
<td valign="top" align="center">0.02 (0.01)</td>
<td valign="top" align="center">0.00 (0.00)</td>
<td valign="top" align="center">&#x02212;0.06 (0.06)</td>
</tr>
<tr>
<td valign="top" align="left" colspan="9"><bold>Factor 5:</bold> <italic><bold>Picky</bold></italic></td>
</tr>
<tr>
<td valign="top" align="left">Adjusted for age and BMI</td>
<td valign="top" align="center">&#x02212;0.01 (0.03)</td>
<td valign="top" align="center">0.01 (0.01)</td>
<td valign="top" align="center">0.02 (0.03)</td>
<td valign="top" align="center">0.07 (0.03)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
<td valign="top" align="center">&#x02212;0.01 (0.04)</td>
<td valign="top" align="center">0.02 (0.01)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
<td valign="top" align="center">0.00 (0.01)</td>
<td valign="top" align="center">0.14 (0.06)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
</tr>
<tr>
<td valign="top" align="left">Multivariate adjusted<xref ref-type="table-fn" rid="TN13"><sup>d</sup></xref></td>
<td valign="top" align="center">&#x02212;0.01 (0.03)</td>
<td valign="top" align="center">0.01 (0.01)</td>
<td valign="top" align="center">0.02 (0.03)</td>
<td valign="top" align="center">0.07 (0.03)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
<td valign="top" align="center">&#x02212;0.01 (0.04)</td>
<td valign="top" align="center">0.02 (0.01)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
<td valign="top" align="center">0.00 (0.01)</td>
<td valign="top" align="center">0.14 (0.06)<xref ref-type="table-fn" rid="TN11"><sup>b</sup></xref></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TN10">
<label>a</label>
<p><italic>SE in parentheses</italic>.</p></fn>
<fn id="TN11">
<label>b</label>
<p><italic>p &#x0003C; 0.05</italic>.</p></fn>
<fn id="TN12">
<label>c</label>
<p><italic>p &#x0003C; 0.01</italic>.</p></fn>
<fn id="TN13">
<label>d</label>
<p><italic>Multivariate models were adjusted for age, BMI, area, education, smoking, age at menarche, age at first full-term delivery, parity, age at menopause, parity, family history of breast cancer, history of benign breast disease, use of HRT, use of oral contraceptives, breastfeeding, moderate physical activity, height, body mass index, total energy intake, and menopausal status</italic>.</p></fn>
<fn id="TN14">
<label>e</label>
<p><italic>Association between dietary patterns (factors) and plasma lipid biomarkers based on 804 controls</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
<p>From the <italic>Pitman&#x00027;s</italic> test results, we found that the model containing all of the factors was slightly better than the model containing all of the classes in predicting HDL cholesterol (<italic>p</italic> = 0.04), triacylglycerols (<italic>p</italic> = 0.03), blood glucose (<italic>p</italic> = 0.04), apolipoprotein A1 (<italic>p</italic> = 0.02), high-sensitivity C-reactive protein (<italic>p</italic> = 0.02), but was weaker than that in predicting the breast cancer risk (<italic>p</italic> = 0.03; <xref ref-type="table" rid="T5">Table 5</xref>).</p>
<table-wrap position="float" id="T5">
<label>Table 5</label>
<caption><p>The proportion of variability explained (<italic>R</italic><sup>2</sup>) by regression models containing all classes or all factors in predicting plasma lipid biomarkers and <italic>Pitman&#x00027;s</italic> test.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Dietary pattern<xref ref-type="table-fn" rid="TN15"><sup>a</sup></xref></bold></th>
<th valign="top" align="center"><bold>LDL cholesterol</bold></th>
<th valign="top" align="center"><bold>HDL cholesterol</bold></th>
<th valign="top" align="center"><bold>Total cholesterol</bold></th>
<th valign="top" align="center"><bold>Triacylglycerols</bold></th>
<th valign="top" align="center"><bold>Blood glucose</bold></th>
<th valign="top" align="center"><bold>Apolipoprotein A1</bold></th>
<th valign="top" align="center"><bold>Apolipoprotein B</bold></th>
<th valign="top" align="center"><bold>High-sensitivity C-reactive Protein</bold></th>
<th valign="top" align="center"><bold>Breast cancer</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" colspan="10"><bold>Model 1: all classes</bold></td>
</tr>
<tr>
<td valign="top" align="left">Classes only<xref ref-type="table-fn" rid="TN16"><sup>b</sup></xref></td>
<td valign="top" align="center">0.005</td>
<td valign="top" align="center">0.003</td>
<td valign="top" align="center">0.007</td>
<td valign="top" align="center">0.023</td>
<td valign="top" align="center">0.014</td>
<td valign="top" align="center">0.002</td>
<td valign="top" align="center">0.011</td>
<td valign="top" align="center">0.000</td>
<td valign="top" align="center">0.005</td>
</tr>
<tr>
<td valign="top" align="left">Adjusted for age and BMI</td>
<td valign="top" align="center">0.014</td>
<td valign="top" align="center">0.005</td>
<td valign="top" align="center">0.018</td>
<td valign="top" align="center">0.023</td>
<td valign="top" align="center">0.017</td>
<td valign="top" align="center">0.005</td>
<td valign="top" align="center">0.016</td>
<td valign="top" align="center">0.001</td>
<td valign="top" align="center">0.009</td>
</tr>
<tr>
<td valign="top" align="left">Multivariate adjusted<xref ref-type="table-fn" rid="TN17"><sup>c</sup></xref></td>
<td valign="top" align="center">0.112</td>
<td valign="top" align="center">0.023</td>
<td valign="top" align="center">0.141</td>
<td valign="top" align="center">0.091</td>
<td valign="top" align="center">0.055</td>
<td valign="top" align="center">0.039</td>
<td valign="top" align="center">0.131</td>
<td valign="top" align="center">0.021</td>
<td valign="top" align="center">0.023</td>
</tr>
<tr>
<td valign="top" align="left" colspan="10"><bold>Model 2: all factors</bold></td>
</tr>
<tr>
<td valign="top" align="left">Factors only</td>
<td valign="top" align="center">0.014</td>
<td valign="top" align="center">0.011</td>
<td valign="top" align="center">0.021</td>
<td valign="top" align="center">0.069</td>
<td valign="top" align="center">0.024</td>
<td valign="top" align="center">0.012</td>
<td valign="top" align="center">0.020</td>
<td valign="top" align="center">0.015</td>
<td valign="top" align="center">0.008</td>
</tr>
<tr>
<td valign="top" align="left">Adjusted for age and BMI</td>
<td valign="top" align="center">0.024</td>
<td valign="top" align="center">0.012</td>
<td valign="top" align="center">0.024</td>
<td valign="top" align="center">0.034</td>
<td valign="top" align="center">0.027</td>
<td valign="top" align="center">0.015</td>
<td valign="top" align="center">0.026</td>
<td valign="top" align="center">0.017</td>
<td valign="top" align="center">0.011</td>
</tr>
<tr>
<td valign="top" align="left">Multivariate adjusted<xref ref-type="table-fn" rid="TN17"><sup>c</sup></xref></td>
<td valign="top" align="center">0.114</td>
<td valign="top" align="center">0.031</td>
<td valign="top" align="center">0.141</td>
<td valign="top" align="center">0.099</td>
<td valign="top" align="center">0.063</td>
<td valign="top" align="center">0.049</td>
<td valign="top" align="center">0.131</td>
<td valign="top" align="center">0.031</td>
<td valign="top" align="center">0.014</td>
</tr>
<tr>
<td valign="top" align="left"><italic>P</italic>-value for Pitman&#x00027;s test</td>
<td valign="top" align="center">0.42</td>
<td valign="top" align="center">0.04</td>
<td valign="top" align="center">1.00</td>
<td valign="top" align="center">0.03</td>
<td valign="top" align="center">0.04</td>
<td valign="top" align="center">0.02</td>
<td valign="top" align="center">1.00</td>
<td valign="top" align="center">0.02</td>
<td valign="top" align="center">0.03</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TN15">
<label>a</label>
<p><italic>Association between dietary patterns (classes) and plasma lipid biomarkers and the breast cancer risk based on all subjects (695 cases, 804 controls)</italic>.</p></fn>
<fn id="TN16">
<label>b</label>
<p><italic>Because the classes are categorical variables, regression models contain only three classes because one class as the reference</italic>.</p></fn>
<fn id="TN17">
<label>c</label>
<p><italic>Multivariate models were adjusted for age, BMI, area, education, smoking, age at menarche, age at first full-term delivery, parity, age at menopause, parity, family history of breast cancer, history of benign breast disease, use of HRT, use of oral contraceptives, breastfeeding, moderate physical activity, height, body mass index, total energy intake, and menopausal status</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec>
<title>Dietary Patterns and Health Outcomes</title>
<p>For FA, the <italic>Prudent</italic>-factor was associated with a lower breast cancer risk (4th vs. 1st quartile: OR for 0.70, 95% CI: 0.52&#x02013;0.95, <italic>p</italic>-trend = 0.0029), while the <italic>Picky</italic>-factor was associated with a higher breast cancer risk (4th vs. 1st quartile: OR for 1.35, 95% CI: 1.00&#x02013;1.81, <italic>p</italic>-trend = 0.1220; <xref ref-type="table" rid="T6">Table 6</xref>). For LCA, we found that the <italic>Prudent</italic>-class was similar to the Mediterranean pattern in terms of the correlation with food intake. Using the <italic>Prudent</italic>-class as the reference, we found that individuals belonging to the <italic>Picky</italic>-class have a significant higher breast cancer risk (OR for 1.42, 95% CI = 1.06, 1.90) (<xref ref-type="table" rid="T6">Table 6</xref>).</p>
<table-wrap position="float" id="T6">
<label>Table 6</label>
<caption><p>Associations between the dietary patterns derived by FA and LCA and health outcome (breast cancer)<xref ref-type="table-fn" rid="TN18"><sup>a</sup></xref>, adjusted OR and 95% CI<xref ref-type="table-fn" rid="TN19"><sup>b</sup></xref>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Factor analysis</bold></th>
<th valign="top" align="center"><bold>Factor 1:</bold></th>
<th valign="top" align="center"><bold>Factor 2:</bold></th>
<th valign="top" align="center"><bold>Factor 3:</bold></th>
<th valign="top" align="center"><bold>Factor 4:</bold></th>
<th valign="top" align="center"><bold>Factor 5:</bold></th>
</tr>
<tr>
<th/>
<th valign="top" align="center"><bold><italic>Prudent</italic></bold></th>
<th valign="top" align="center"><bold><italic>Sugar</italic></bold></th>
<th valign="top" align="center"><bold><italic>Western</italic></bold></th>
<th valign="top" align="center"><bold><italic>Chinese</italic></bold></th>
<th valign="top" align="center"><bold><italic>Picky</italic></bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Quartile 1</td>
<td valign="top" align="center">1.00 (reference)</td>
<td valign="top" align="center">1.00 (reference)</td>
<td valign="top" align="center">1.00 (reference)</td>
<td valign="top" align="center">1.00 (reference)</td>
<td valign="top" align="center">1.00 (reference)</td>
</tr>
<tr>
<td valign="top" align="left">Quartile 2</td>
<td valign="top" align="center">1.12 (0.83, 1.50)</td>
<td valign="top" align="center">1.03 (0.77, 1.39)</td>
<td valign="top" align="center">0.81 (0.60, 1.09)</td>
<td valign="top" align="center">1.15 (0.80, 1.66)</td>
<td valign="top" align="center">1.39 (1.03, 1.86)</td>
</tr>
<tr>
<td valign="top" align="left">Quartile 3</td>
<td valign="top" align="center">0.77 (0.57, 1.03)</td>
<td valign="top" align="center">1.05 (0.78, 1.42)</td>
<td valign="top" align="center">1.05 (0.78, 1.42)</td>
<td valign="top" align="center">0.94 (0.63, 1.40)</td>
<td valign="top" align="center">1.19 (0.88, 1.60)</td>
</tr>
<tr>
<td valign="top" align="left">Quartile 4</td>
<td valign="top" align="center">0.70 (0.52, 0.95)</td>
<td valign="top" align="center">1.06 (0.79, 1.43)</td>
<td valign="top" align="center">0.95 (0.70, 1.28)</td>
<td valign="top" align="center">0.71 (0.46, 1.09)</td>
<td valign="top" align="center">1.35 (1.00, 1.81)</td>
</tr>
<tr>
<td valign="top" align="left"><italic>P</italic> for trend</td>
<td valign="top" align="center">0.0029</td>
<td valign="top" align="center">0.6832</td>
<td valign="top" align="center">0.8270</td>
<td valign="top" align="center">0.0940</td>
<td valign="top" align="center">0.1220</td>
</tr> <tr style="border-top: thin solid #000000;">
<td valign="top" align="left"><bold>Latent class analysis</bold></td>
<td valign="top" align="center"><bold>Class 1:</bold></td>
<td valign="top" align="center"><bold>&#x02013;</bold></td>
<td valign="top" align="center"><bold>Class 2:</bold></td>
<td valign="top" align="center"><bold>Class 3:</bold></td>
<td valign="top" align="center"><bold>Class 4:</bold></td>
</tr>
<tr style="border-bottom: thin solid #000000;">
<td/>
<td valign="top" align="center"><italic><bold>Prudent</bold></italic></td>
<td valign="top" align="center"><bold>&#x02013;</bold></td>
<td valign="top" align="center"><italic><bold>Western</bold></italic></td>
<td valign="top" align="center"><italic><bold>Chinese</bold></italic></td>
<td valign="top" align="center"><italic><bold>Picky</bold></italic></td>
</tr> <tr>
<td/>
<td valign="top" align="center">1.00 (reference)</td>
<td valign="top" align="center">&#x02013;</td>
<td valign="top" align="center">0.76 (0.53, 1.09)</td>
<td valign="top" align="center">0.86 (0.65, 1.14)</td>
<td valign="top" align="center">1.42 (1.06, 1.90)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TN18">
<label>a</label>
<p><italic>Association between dietary patterns (classes) and plasma lipid biomarkers and the breast cancer risk based on all subjects (695 cases, 804 controls)</italic>.</p></fn>
<fn id="TN19">
<label>b</label>
<p><italic>Adjusted for or age, BMI, area, education, smoking, age at menarche, age at first full-term delivery, parity, age at menopause, parity, family history of breast cancer, history of benign breast disease, use of HRT, use of oral contraceptives, breastfeeding, moderate physical activity, height, body mass index, total energy intake, and menopausal status</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>Nutritional studies have historically been focusing on specific nutrients or foods in isolation and oversimplified the complexity of foods (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B6">6</xref>). A high degree of intercorrelation among various nutrients and foods makes it difficult to attribute effects to a single independent component, and the interpretation and application of results were limited (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B5">5</xref>). Now, in nutrition epidemiology, the concept of food synergy has been convinced that nutrients exist in a purposeful biological sense in food. The dietary patterns that inherently account for interactions among nutrients and estimate overall dietary effects may provide a more robust approach for determining associations between diet and health outcomes (<xref ref-type="bibr" rid="B8">8</xref>, <xref ref-type="bibr" rid="B9">9</xref>).</p>
<p>Although various methods have been developed to derive dietary patterns, there are still many challenges in an accurate identification of dietary patterns (<xref ref-type="bibr" rid="B37">37</xref>). Different statistical methods use different concepts and techniques to reduce the complex multidimensional nutritional data down to meaningfully observed dietary patterns. For example, the most commonly used FA method is &#x0201C;variance-oriented,&#x0201D; which is achieved by partitioning variances among variables and explaining the correlations between many observed variables through few underlying continuous latent variables. In contrast, LCA is a &#x0201C;person-oriented&#x0201D; approach, which models the distinct configurations of heterogeneity within a sample and divides the sample into mutually exclusive subgroups with different dietary structures (<xref ref-type="bibr" rid="B38">38</xref>, <xref ref-type="bibr" rid="B39">39</xref>). When applying the dietary patterns derived from different methods indiscriminately to studies, it may affect the reliability and generalizability of the results.</p>
<p>The results of this study show that the dietary patterns derived from the different methods are both formally and biologically different. The FA approach summarizes five factors (&#x0201C;<italic>Prudent</italic>,&#x0201D; &#x0201C;<italic>Western</italic>,&#x0201D; &#x0201C;<italic>Chinese traditional</italic>,&#x0201D; &#x0201C;<italic>Picky</italic>,&#x0201D; and &#x0201C;<italic>Sugar</italic>&#x0201D;) based on the correlation of food group intake, LCA approach derives four classes (&#x0201C;<italic>Prudent</italic>,&#x0201D; &#x0201C;<italic>Western</italic>,&#x0201D; &#x0201C;<italic>Chinese traditional</italic>,&#x0201D; and &#x0201C;<italic>Picky</italic>&#x0201D;) based on the differences in a dietary structure of the study population. Despite on the basis of characteristics of the conditional probability of LCA and factor loading of FA as well as the factor scores of the latent class on the corresponding factors, the same-named dietary patterns are similar in diet characteristics. However, the FA method identified a typical food combination from a strong preference for sweet foods, while the LCA method did not derive the &#x0201C;pure&#x0201D; <italic>Sugar</italic>-class. On another side, the characteristics of the <italic>Picky</italic> pattern were high extreme probabilities of non-consumption on specific foods, which was only reflected in the LCA result.</p>
<p>Through examining the associations between dietary patterns and plasma lipid biomarkers, we found that the <italic>Prudent</italic>-dietary pattern characteristic of cereal, aquatics, fruits, soy foods, and nuts in case of its derivation by LCA or FA was inversely associated with triacylglycerols, blood glucose, and apolipoprotein B. While the <italic>Picky</italic> pattern was associated with triacylglycerols and blood glucose when derived by LCA and was associated with triacylglycerols, apolipoprotein A1, and high-sensitivity C-reactive protein when derived by FA. <italic>Chinese traditional</italic> and <italic>Western</italic> patterns were not significantly associated with any of the plasma lipid biomarkers regardless of using the LCA or FA method. Although the coefficients of pattern-plasma lipid biomarker regression from LCA and FA cannot be compared directly because the dietary patterns (classes) derived by LCA were treated as indicator variables and are dichotomous, whereas the dietary patterns (factors) derived by FA were treated as continuous variables (<italic>z-</italic>scores), the associations between dietary patterns and biomarkers were in a similar direction for both LCA and FA methods. When we compared a model containing all the classes with a model containing all the factors, we found that FA is slightly better than LCA in predicting some plasma lipid biomarkers (HDL cholesterol, triacylglycerols, blood glucose, apolipoprotein A1, and high-sensitivity C-reactive protein), while LCA is better than FA in predicting the breast cancer risk. Furthermore, we examined the dietary patterns-health outcome associations. Because the factors derived by FA are not mutually exclusive, an individual&#x00027;s dietary pattern can only be inferred by her factor score of the derived factors (<xref ref-type="bibr" rid="B40">40</xref>). We found that women with the highest quartile score of the <italic>Prudent</italic>-factor decreased 30% risk compared to women with the lowest quartile, and with robust linearity (<italic>p</italic>-trend = 0.0029). While women who follow a <italic>Picky</italic>-factor increase 35% risk of breast cancer, but there is insufficient evidence for considerable linearity (<italic>p</italic>-trend = 0.1220). In contrast, LCA classifies participants into mutually exclusive groups, the disease risk can be directly compared between groups, but need to select a reference first. We used the <italic>Prudent</italic>-class as the reference, which was similar to the recognized healthy dietary pattern (Mediterranean diet, <xref ref-type="fig" rid="F3">Figure 3</xref>) and found that individuals belonging to the <italic>Picky</italic>-class have a 42% higher risk of breast cancer than those belonging to the <italic>Prudent</italic>-class.</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Correlations between food consumption and the dietary pattern, based on the posterior LCA method and the prior diet quality index (DQI) method. Compared with the data-driven &#x0201C;posterior&#x0201D; method, the &#x0201C;<italic>a priori</italic>&#x0201D; method has a clearer biological meaning under a certain diet pattern. This study found that in terms of its relevance to the specific food group, the <italic>Prudent</italic>-dietary pattern from LCA is similar to the Mediterranean dietary pattern.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnut-08-645398-g0003.tif"/>
</fig>
<p>The difference between the dietary patterns derived from LCA and FA methods can be explained by their concept and technology. FA summaries dietary patterns based on the correlation between foods intake. The methodological characteristics of FA may explain why the dietary patterns derived by FA are more closely related to plasma lipid biomarkers than those derived by LCA, and the synergy produced by highly correlated foods strengthens the relationship between dietary patterns and plasma lipid biomarkers (<xref ref-type="fig" rid="F1">Figure 1</xref>). However, we cannot make a direct comparison of the risk of disease between individuals using the FA approach (<xref ref-type="bibr" rid="B40">40</xref>), which needs mutually exclusive subgroups and a chosen reference group. The challenge is that when the number of factors is more than 2, the number of derived cells from the cross-tabulation of the quantiles of all factor scores might be too large, which needs strong subjective decisions to collapse them into mutually exclusive groups (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B41">41</xref>). In contrast, LCA is well-suited to an issue of identifying the heterogeneity embedded in the sample and classifying the sample into mutually exclusive subgroups. Because LCA is based on the FMM, which postulates that there are subgroups with different dietary structures, and these subgroups should have different food consumption probability distributions (<xref ref-type="fig" rid="F1">Figure 1</xref>) (<xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B42">42</xref>, <xref ref-type="bibr" rid="B43">43</xref>). Through FMM, the distribution is heterogeneous across the overall sample but homogeneous within subgroups, which maximize the differences of the dietary patterns derived by LCA in the food consumption probability (<xref ref-type="bibr" rid="B44">44</xref>). The characteristics of LCA make it easier to compare the health outcome between the individuals because an individual belongs to only one class and the health outcome is also specific to individuals within each class.</p>
<p>Most previous research on dietary patterns and the breast cancer risk was conducted by the FA method in Western populations. An inverse association with the <italic>Prudent</italic>-dietary pattern and a positive correlation with the <italic>Western</italic>-dietary pattern of the breast cancer risk have been found in most studies (<xref ref-type="bibr" rid="B45">45</xref>&#x02013;<xref ref-type="bibr" rid="B47">47</xref>). However, the results were not consistent. Although there were a few studies on dietary patterns and the breast cancer risk in Asian women, conflicting results were also noted (<xref ref-type="bibr" rid="B48">48</xref>&#x02013;<xref ref-type="bibr" rid="B52">52</xref>). In this study, based on LCA results, there is no significant difference between breast cancer and the <italic>Prudent-</italic>class, <italic>Western</italic>-class, or <italic>Chinese traditional</italic>-class. What deserves attention is the <italic>Picky</italic>-class, which is similar to the &#x0201C;<italic>Salty</italic>-pattern&#x0201D; in a previous study (<xref ref-type="bibr" rid="B53">53</xref>), women in the <italic>Picky</italic>-class were characterized by higher extreme probabilities of non-consumption on specific foods, the highest probabilities in consumption of pickled foods, and the lowest probabilities in consumption of cereals, soy foods, and nuts. The risk of the <italic>Picky</italic>-class may come from an imbalance diet that could lead to the loss of certain vital nutrients and a high consumption of pickled foods that are prone to inflammation (<xref ref-type="bibr" rid="B33">33</xref>).</p>
<p>The strength of this study included the study design that allows us to compare the predictability and comparability of biomarkers and the disease risk between the dietary patterns derived from different posterior methods, and this study provides evidence that the dietary patterns derived from posterior methods are biologically meaningful and demonstrates the role of dietary patterns in the disease risk. A understanding of the derivation of dietary patterns will advance the application of dietary patterns in nutrition research. The results of this study indicated that the dietary pattern derived from the FA is suitable for analyzing the synergistic effect of food effects on biomarkers, while the dietary patterns derived from LCA were used to compare the disease risk among people with a different diet structure. The limitation of the study is that both LCA and FA methods are highly data-driven, and a cross-validation with other independent samples in the future is required (<xref ref-type="bibr" rid="B54">54</xref>, <xref ref-type="bibr" rid="B55">55</xref>). The next work is to compare the dietary patterns derived by FA and LAC concerning other biomarkers and health outcomes for a better understanding of the utility of these methods in nutritional epidemiology research.</p>
</sec>
<sec sec-type="conclusions" id="s5">
<title>Conclusion</title>
<p>In conclusion, FA is suitable for an understanding of the correlations between dietary intake and analyzing the synergistic effect of food intake; LCA divides people into mutually exclusive subgroups with different diet structures, which is conducive to compare the disease risk between the groups. We recommend the use of flexible modeling approaches capable of being adapted to specific research.</p>
</sec>
<sec sec-type="data-availability" id="s6">
<title>Data Availability Statement</title>
<p>The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request.</p>
</sec>
<sec id="s7">
<title>Ethics Statement</title>
<p>This study was conducted according to the guidelines laid down in the Declaration of Helsinki and all procedures involving human subjects/patients were approved by the Jiangsu Center for Disease Control and Prevention Ethical Committee. The subjects/patients provided their written informed consent to participate in this study.</p>
</sec>
<sec id="s8">
<title>Author Contributions</title>
<p>All authors contributed to the preparation of the manuscript. MW, SC, and PMW: designed and conducted the study. QRZ, ZZ, and JYZ: developed diet indices and data collection. SC and LCL: performed the statistical analyses and drafted the manuscript. PMW and MW: interpreted the data, critically revised the manuscript, and had full responsibility for the analyses and interpretation of the data.</p>
</sec>
<sec sec-type="funding-information" id="s9">
<title>Funding</title>
<p>This study was supported by World Cancer Research Fund (2011/RFA/473).</p>
</sec>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x00027;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack><p>We are grateful to all study participants for their contributions. We thank the entire data collection team. Breast cancer cases and healthy controls in this study were collected by the Wuxi Center for Disease Control and Prevention, Jiangsu Provincial Center for Disease Control and Prevention.</p>
</ack><sec sec-type="supplementary-material" id="s11">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fnut.2021.645398/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fnut.2021.645398/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Image_1.pdf" id="SM1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<label>1.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hu</surname> <given-names>FB</given-names></name></person-group>. <article-title>Dietary pattern analysis: a new direction in nutritional epidemiology</article-title>. <source>Curr Opin Lipidol.</source> (<year>2002</year>) <volume>13</volume>:<fpage>3</fpage>&#x02013;<lpage>9</lpage>. <pub-id pub-id-type="doi">10.1097/00041433-200202000-00002</pub-id><pub-id pub-id-type="pmid">11790957</pub-id></citation></ref>
<ref id="B2">
<label>2.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kant</surname> <given-names>AK</given-names></name></person-group>. <article-title>Dietary patterns and health outcomes</article-title>. <source>J Am Diet Assoc.</source> (<year>2004</year>) <volume>104</volume>:<fpage>615</fpage>&#x02013;<lpage>35</lpage>. <pub-id pub-id-type="doi">10.1016/j.jada.2004.01.010</pub-id><pub-id pub-id-type="pmid">15054348</pub-id></citation></ref>
<ref id="B3">
<label>3.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Michels</surname> <given-names>KB</given-names></name> <name><surname>Mohllajee</surname> <given-names>AP</given-names></name> <name><surname>Roset-Bahmanyar</surname> <given-names>E</given-names></name> <name><surname>Beehler</surname> <given-names>GP</given-names></name> <name><surname>Moysich</surname> <given-names>KB</given-names></name></person-group>. <article-title>Diet and breast cancer: a review of the prospective observational studies</article-title>. <source>Cancer.</source> (<year>2007</year>) <volume>109</volume>:<fpage>2712</fpage>&#x02013;<lpage>49</lpage>. <pub-id pub-id-type="doi">10.1002/cncr.22654</pub-id><pub-id pub-id-type="pmid">17503428</pub-id></citation></ref>
<ref id="B4">
<label>4.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Moeller</surname> <given-names>SM</given-names></name> <name><surname>Reedy</surname> <given-names>J</given-names></name> <name><surname>Millen</surname> <given-names>AE</given-names></name> <name><surname>Dixon</surname> <given-names>LB</given-names></name> <name><surname>Newby</surname> <given-names>PK</given-names></name> <name><surname>Tucker</surname> <given-names>KL</given-names></name> <etal/></person-group>. <article-title>Dietary patterns: challenges and opportunities in dietary patterns research an Experimental Biology workshop, April 1, 2006</article-title>. <source>J Am Diet Assoc.</source> (<year>2007</year>) <volume>107</volume>:<fpage>1233</fpage>&#x02013;<lpage>9</lpage>. <pub-id pub-id-type="doi">10.1016/j.jada.2007.03.014</pub-id><pub-id pub-id-type="pmid">17604756</pub-id></citation></ref>
<ref id="B5">
<label>5.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tapsell</surname> <given-names>LC</given-names></name></person-group>. <article-title>Foods and food components in the Mediterranean diet: supporting overall effects</article-title>. <source>BMC Med.</source> (<year>2014</year>) <volume>12</volume>:<fpage>100</fpage>. <pub-id pub-id-type="doi">10.1186/1741-7015-12-100</pub-id><pub-id pub-id-type="pmid">24935157</pub-id></citation></ref>
<ref id="B6">
<label>6.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kerr</surname> <given-names>J</given-names></name> <name><surname>Anderson</surname> <given-names>C</given-names></name> <name><surname>Lippman</surname> <given-names>SM</given-names></name></person-group>. <article-title>Physical activity, sedentary behaviour, diet, and cancer: an update and emerging new evidence</article-title>. <source>Lancet Oncol.</source> (<year>2017</year>) <volume>18</volume>:<fpage>e457</fpage>&#x02013;<lpage>71</lpage>. <pub-id pub-id-type="doi">10.1016/S1470-2045(17)30411-4</pub-id><pub-id pub-id-type="pmid">28759385</pub-id></citation></ref>
<ref id="B7">
<label>7.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Costacou</surname> <given-names>T</given-names></name> <name><surname>Bamia</surname> <given-names>C</given-names></name> <name><surname>Ferrari</surname> <given-names>P</given-names></name> <name><surname>Riboli</surname> <given-names>E</given-names></name> <name><surname>Trichopoulos</surname> <given-names>D</given-names></name> <name><surname>Trichopoulou</surname> <given-names>AJE</given-names></name> <etal/></person-group>. <article-title>Tracing the Mediterranean diet through principal components and cluster analyses in the Greek population</article-title>. <source>Eur J Clin Nutr.</source> (<year>2003</year>) <volume>57</volume>:<fpage>1378</fpage>&#x02013;<lpage>85</lpage>. <pub-id pub-id-type="doi">10.1038/sj.ejcn.1601699</pub-id><pub-id pub-id-type="pmid">14576750</pub-id></citation></ref>
<ref id="B8">
<label>8.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gleason</surname> <given-names>PM</given-names></name> <name><surname>Boushey</surname> <given-names>CJ</given-names></name> <name><surname>Harris</surname> <given-names>JE</given-names></name> <name><surname>Zoellner</surname> <given-names>J</given-names></name></person-group>. <article-title>Publishing nutrition research: a review of multivariate techniques&#x02013;part 3: data reduction methods</article-title>. <source>J Acad Nutr Diet.</source> (<year>2015</year>) <volume>115</volume>:<fpage>1072</fpage>&#x02013;<lpage>82</lpage>. <pub-id pub-id-type="doi">10.1016/j.jand.2015.03.011</pub-id><pub-id pub-id-type="pmid">25935571</pub-id></citation></ref>
<ref id="B9">
<label>9.</label>
<citation citation-type="book"><person-group person-group-type="author"><name><surname>Castello</surname> <given-names>A</given-names></name> <name><surname>Buijsse</surname> <given-names>B</given-names></name> <name><surname>Martin</surname> <given-names>M</given-names></name> <name><surname>Ruiz</surname> <given-names>A</given-names></name> <name><surname>Casas</surname> <given-names>AM</given-names></name> <name><surname>Baena-Canada</surname> <given-names>JM</given-names></name> <etal/></person-group>. <article-title>Evaluating the applicability of data-driven dietary patterns to independent samples with a focus on measurement tools for pattern similarity</article-title>. <source>J Acad Nutr Diet.</source> (<year>2016</year>) <volume>116</volume>:<fpage>1914</fpage>&#x02013;<lpage>24</lpage> e1916. <pub-id pub-id-type="doi">10.1016/j.jand.2016.05.008</pub-id><pub-id pub-id-type="pmid">27373727</pub-id></citation></ref>
<ref id="B10">
<label>10.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kant</surname> <given-names>AK</given-names></name></person-group>. <article-title>Indexes of overall diet quality: a review</article-title>. <source>J Am Diet Assoc.</source> (<year>1996</year>) <volume>96</volume>:<fpage>785</fpage>&#x02013;<lpage>91</lpage>. <pub-id pub-id-type="doi">10.1016/S0002-8223(96)00217-9</pub-id><pub-id pub-id-type="pmid">8683010</pub-id></citation></ref>
<ref id="B11">
<label>11.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Trichopoulos</surname> <given-names>D</given-names></name> <name><surname>Lagiou</surname> <given-names>PJB</given-names></name></person-group>. <article-title>Dietary patterns and mortality</article-title>. <source>Br J Nutr</source>. (<year>2001</year>) <volume>85</volume>:<fpage>133</fpage>&#x02013;<lpage>4</lpage>. <pub-id pub-id-type="doi">10.1079/BJN2000282</pub-id><pub-id pub-id-type="pmid">11242479</pub-id></citation></ref>
<ref id="B12">
<label>12.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ocke</surname> <given-names>MC</given-names></name></person-group>. <article-title>Evaluation of methodologies for assessing the overall diet: dietary quality scores and dietary pattern analysis</article-title>. <source>Proc Nutr Soc.</source> (<year>2013</year>) <volume>72</volume>:<fpage>191</fpage>&#x02013;<lpage>9</lpage>. <pub-id pub-id-type="doi">10.1017/S0029665113000013</pub-id><pub-id pub-id-type="pmid">23360896</pub-id></citation></ref>
<ref id="B13">
<label>13.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Newby</surname> <given-names>PK</given-names></name> <name><surname>Tucker</surname> <given-names>KL</given-names></name></person-group>. <article-title>Empirically derived eating patterns using factor or cluster analysis: a review</article-title>. <source>Nutr Rev.</source> (<year>2004</year>) <volume>62</volume>:<fpage>177</fpage>&#x02013;<lpage>203</lpage>. <pub-id pub-id-type="doi">10.1111/j.1753-4887.2004.tb00040.x</pub-id><pub-id pub-id-type="pmid">15212319</pub-id></citation></ref>
<ref id="B14">
<label>14.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Newby</surname> <given-names>PK</given-names></name> <name><surname>Muller</surname> <given-names>D</given-names></name> <name><surname>Tucker</surname> <given-names>KL</given-names></name></person-group>. <article-title>Associations of empirically derived eating patterns with plasma lipid biomarkers: a comparison of factor and cluster analysis methods</article-title>. <source>Am J Clin Nutr.</source> (<year>2004</year>) <volume>80</volume>:<fpage>759</fpage>&#x02013;<lpage>767</lpage>. <pub-id pub-id-type="doi">10.1093/ajcn/80.3.759</pub-id><pub-id pub-id-type="pmid">15321819</pub-id></citation></ref>
<ref id="B15">
<label>15.</label>
<citation citation-type="book"><person-group person-group-type="author"><name><surname>Chatfied</surname> <given-names>C</given-names></name> <name><surname>Collins</surname> <given-names>A</given-names></name></person-group>. <source>Introduction to Multivariate Analysis</source>. <publisher-loc>Boca Raton</publisher-loc>: <publisher-name>Routledge</publisher-name> (<year>2018</year>).</citation>
</ref>
<ref id="B16">
<label>16.</label>
<citation citation-type="book"><person-group person-group-type="author"><name><surname>Everitt</surname> <given-names>BS</given-names></name> <name><surname>Landau</surname> <given-names>S</given-names></name> <name><surname>Leese</surname> <given-names>M</given-names></name> <name><surname>Stahl</surname> <given-names>D</given-names></name></person-group>. <source>Cluster Analysis 5th ed.</source> <publisher-loc>London</publisher-loc>: <publisher-name>Wiley</publisher-name> (<year>2011</year>). <pub-id pub-id-type="doi">10.1002/9780470977811</pub-id><pub-id pub-id-type="pmid">25855820</pub-id></citation></ref>
<ref id="B17">
<label>17.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Berlin</surname> <given-names>KS</given-names></name> <name><surname>Parra</surname> <given-names>GR</given-names></name> <name><surname>Williams</surname> <given-names>NA</given-names></name></person-group>. <article-title>An introduction to latent variable mixture modeling (part 2): longitudinal latent class growth analysis and growth mixture models</article-title>. <source>J Pediatr Psychol.</source> (<year>2014</year>) <volume>39</volume>:<fpage>188</fpage>&#x02013;<lpage>203</lpage>. <pub-id pub-id-type="doi">10.1093/jpepsy/jst085</pub-id><pub-id pub-id-type="pmid">24277770</pub-id></citation></ref>
<ref id="B18">
<label>18.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Berlin</surname> <given-names>KS</given-names></name> <name><surname>Williams</surname> <given-names>NA</given-names></name> <name><surname>Parra</surname> <given-names>GR</given-names></name></person-group>. <article-title>An introduction to latent variable mixture modeling (part 1): overview and cross-sectional latent class and latent profile analyses</article-title>. <source>J Pediatr Psychol.</source> (<year>2014</year>) <volume>39</volume>:<fpage>174</fpage>&#x02013;<lpage>87</lpage>. <pub-id pub-id-type="doi">10.1093/jpepsy/jst084</pub-id><pub-id pub-id-type="pmid">24277769</pub-id></citation></ref>
<ref id="B19">
<label>19.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fahey</surname> <given-names>MT</given-names></name> <name><surname>Thane</surname> <given-names>CW</given-names></name> <name><surname>Bramwell</surname> <given-names>GD</given-names></name> <name><surname>Coward</surname> <given-names>WA</given-names></name></person-group>. <article-title>Conditional gaussian mixture modelling for dietary pattern analysis</article-title>. <source>J R Statist Soc.</source> (<year>2007</year>) <volume>170</volume>:<fpage>149</fpage>&#x02013;<lpage>66</lpage>. <pub-id pub-id-type="doi">10.1111/j.1467-985X.2006.00452.x</pub-id></citation>
</ref>
<ref id="B20">
<label>20.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rabe-Hesketh</surname> <given-names>S</given-names></name> <name><surname>Skrondal</surname> <given-names>A</given-names></name></person-group>. <article-title>Classical latent variable models for medical research</article-title>. <source>Stat Methods Med Res.</source> (<year>2008</year>) <volume>17</volume>:<fpage>5</fpage>&#x02013;<lpage>32</lpage>. <pub-id pub-id-type="doi">10.1177/0962280207081236</pub-id><pub-id pub-id-type="pmid">17855748</pub-id></citation></ref>
<ref id="B21">
<label>21.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sotres-Alvarez</surname> <given-names>D</given-names></name> <name><surname>Herring</surname> <given-names>AH</given-names></name> <name><surname>Siega-Riz</surname> <given-names>A</given-names></name></person-group>. <article-title>Latent class analysis is useful to classify pregnant women into dietary patterns</article-title>. <source>J Nutr.</source> (<year>2010</year>) <volume>140</volume>:<fpage>2253</fpage>&#x02013;<lpage>9</lpage>. <pub-id pub-id-type="doi">10.3945/jn.110.124909</pub-id><pub-id pub-id-type="pmid">20962151</pub-id></citation></ref>
<ref id="B22">
<label>22.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>de Vos</surname> <given-names>S</given-names></name> <name><surname>Wardenaar</surname> <given-names>KJ</given-names></name> <name><surname>Bos</surname> <given-names>EH</given-names></name> <name><surname>Wit</surname> <given-names>EC</given-names></name> <name><surname>de Jonge</surname> <given-names>PJB</given-names></name></person-group>. <article-title>Decomposing the heterogeneity of depression at the person-, symptom-, and time-level: latent variable models versus multimode principal component analysis</article-title>. <source>BMC Med Res Methodol.</source> (<year>2015</year>) <volume>15</volume>:<fpage>88</fpage>. <pub-id pub-id-type="doi">10.1186/s12874-015-0080-4</pub-id><pub-id pub-id-type="pmid">26471992</pub-id></citation></ref>
<ref id="B23">
<label>23.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wardenaar</surname> <given-names>KJ</given-names></name> <name><surname>de</surname> <given-names>Jonge</given-names></name></person-group>. P. Diagnostic heterogeneity in psychiatry: towards an empirical solution. <source>BMC Med.</source> (<year>2013</year>) <volume>11</volume>:<fpage>201</fpage>. <pub-id pub-id-type="doi">10.1186/1741-7015-11-201</pub-id><pub-id pub-id-type="pmid">24228940</pub-id></citation></ref>
<ref id="B24">
<label>24.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fabiani</surname> <given-names>R</given-names></name> <name><surname>Minelli</surname> <given-names>L</given-names></name> <name><surname>Bertarelli</surname> <given-names>G</given-names></name> <name><surname>Bacci</surname> <given-names>S</given-names></name></person-group>. <article-title>A western dietary pattern increases prostate cancer risk: a systematic review and meta-analysis</article-title>. <source>Nutrients.</source> (<year>2016</year>) <volume>8</volume>:<fpage>626</fpage>. <pub-id pub-id-type="doi">10.3390/nu8100626</pub-id><pub-id pub-id-type="pmid">27754328</pub-id></citation></ref>
<ref id="B25">
<label>25.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sun</surname> <given-names>Y</given-names></name> <name><surname>Li</surname> <given-names>Z</given-names></name> <name><surname>Li</surname> <given-names>J</given-names></name> <name><surname>Li</surname> <given-names>Z</given-names></name> <name><surname>Han</surname> <given-names>J</given-names></name></person-group>. <article-title>A healthy dietary pattern reduces lung cancer risk: A systematic review and meta-analysis</article-title>. <source>Nutrients.</source> (<year>2016</year>) <volume>8</volume>:<fpage>134</fpage>. <pub-id pub-id-type="doi">10.3390/nu8030134</pub-id><pub-id pub-id-type="pmid">26959051</pub-id></citation></ref>
<ref id="B26">
<label>26.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Boyd</surname> <given-names>NF</given-names></name> <name><surname>Guo</surname> <given-names>H</given-names></name> <name><surname>Martin</surname> <given-names>LJ</given-names></name> <name><surname>Sun</surname> <given-names>L</given-names></name> <name><surname>Stone</surname> <given-names>J</given-names></name> <name><surname>Fishell</surname> <given-names>E</given-names></name> <etal/></person-group>. <article-title>Mammographic density and the risk and detection of breast cancer</article-title>. <source>New Engl J Med.</source> (<year>2007</year>) <volume>356</volume>:<fpage>227</fpage>&#x02013;<lpage>36</lpage>. <pub-id pub-id-type="doi">10.1056/NEJMoa062790</pub-id><pub-id pub-id-type="pmid">27316945</pub-id></citation></ref>
<ref id="B27">
<label>27.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Boyd</surname> <given-names>NF</given-names></name> <name><surname>Connelly</surname> <given-names>P</given-names></name> <name><surname>Byng</surname> <given-names>J</given-names></name> <name><surname>Yaffe</surname> <given-names>M</given-names></name> <name><surname>Draper</surname> <given-names>H</given-names></name> <name><surname>Little</surname> <given-names>L</given-names></name> <etal/></person-group>. <article-title>Plasma lipids, lipoproteins, mammographic densities</article-title>. <source>Cancer Epidemiol Prevent Biomark.</source> (<year>1995</year>) <volume>4</volume>:<fpage>727</fpage>&#x02013;<lpage>33</lpage>.<pub-id pub-id-type="pmid">8672989</pub-id></citation></ref>
<ref id="B28">
<label>28.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Boyd</surname> <given-names>N</given-names></name> <name><surname>McGuire</surname> <given-names>V</given-names></name></person-group>. <article-title>Evidence of association between plasma high-density lipoprotein cholesterol and risk factors for breast cancer</article-title>. <source>J Natl Cancer Inst.</source> (<year>1990</year>) <volume>82</volume>:<fpage>460</fpage>&#x02013;<lpage>8</lpage>. <pub-id pub-id-type="doi">10.1093/jnci/82.6.460</pub-id><pub-id pub-id-type="pmid">2313717</pub-id></citation></ref>
<ref id="B29">
<label>29.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kaye</surname> <given-names>J</given-names></name> <name><surname>Meier</surname> <given-names>C</given-names></name> <name><surname>Walker</surname> <given-names>A</given-names></name> <name><surname>Jick</surname> <given-names>H</given-names></name></person-group>. <article-title>Statin use, hyperlipidaemia, and the risk of breast cancer</article-title>. <source>Br J Cancer.</source> (<year>2002</year>) <volume>86</volume>:<fpage>1436</fpage>&#x02013;<lpage>9</lpage>. <pub-id pub-id-type="doi">10.1038/sj.bjc.6600267</pub-id><pub-id pub-id-type="pmid">11986777</pub-id></citation></ref>
<ref id="B30">
<label>30.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kitahara</surname> <given-names>CM</given-names></name> <name><surname>De Gonz&#x000E1;lez</surname> <given-names>AB</given-names></name> <name><surname>Freedman</surname> <given-names>ND</given-names></name> <name><surname>Huxley</surname> <given-names>R</given-names></name> <name><surname>Mok</surname> <given-names>Y</given-names></name> <name><surname>Jee</surname> <given-names>SH</given-names></name> <etal/></person-group>. <article-title>Total cholesterol and cancer risk in a large prospective study in Korea</article-title>. <source>J Clin Oncol.</source> (<year>2011</year>) <volume>29</volume>:<fpage>1592</fpage>. <pub-id pub-id-type="doi">10.1200/JCO.2010.31.5200</pub-id><pub-id pub-id-type="pmid">21422422</pub-id></citation></ref>
<ref id="B31">
<label>31.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhao</surname> <given-names>Y</given-names></name> <name><surname>Wang</surname> <given-names>H</given-names></name> <name><surname>Pan</surname> <given-names>Y</given-names></name> <name><surname>Li</surname> <given-names>N</given-names></name> <name><surname>Bian</surname> <given-names>C</given-names></name></person-group>. <article-title>Association of lipid profile levels in premenopausal and postmenopausal women with breast cancer: a meta-analysis</article-title>. <source>Int J Clin Exp Med.</source> (<year>2016</year>) <volume>9</volume>:<fpage>552</fpage>&#x02013;<lpage>63</lpage>.</citation>
</ref>
<ref id="B32">
<label>32.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhao</surname> <given-names>W</given-names></name> <name><surname>Hasegawa</surname> <given-names>K</given-names></name> <name><surname>Chen</surname> <given-names>J</given-names></name></person-group>. <article-title>The use of food-frequency questionnaires for various purposes in China</article-title>. <source>Public Health Nutr.</source> (<year>2002</year>) <volume>5</volume>:<fpage>829</fpage>&#x02013;<lpage>33</lpage>. <pub-id pub-id-type="doi">10.1079/PHN2002374</pub-id><pub-id pub-id-type="pmid">12638592</pub-id></citation></ref>
<ref id="B33">
<label>33.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cao</surname> <given-names>S</given-names></name> <name><surname>Lu</surname> <given-names>S</given-names></name> <name><surname>Zhou</surname> <given-names>J</given-names></name> <name><surname>Zhu</surname> <given-names>Z</given-names></name> <name><surname>Li</surname> <given-names>W</given-names></name> <name><surname>Su</surname> <given-names>J</given-names></name> <etal/></person-group>. <article-title>Association between dietary patterns and risk of breast cancer in Chinese female population: a latent class analysis</article-title>. <source>Public Health Nutr</source>. (<year>2020</year>) <volume>24</volume>:<fpage>4918</fpage>&#x02013;<lpage>28</lpage>. <pub-id pub-id-type="doi">10.1017/S1368980020004826</pub-id><pub-id pub-id-type="pmid">33256868</pub-id></citation></ref>
<ref id="B34">
<label>34.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tibshirani</surname> <given-names>R</given-names></name> <name><surname>Walther</surname> <given-names>G</given-names></name> <name><surname>Hastie</surname> <given-names>T</given-names></name></person-group>. <article-title>Estimating the number of clusters in a data set via the gap statistic</article-title>. <source>J R Statist Soc B.</source> (<year>2001</year>) <volume>63</volume>:<fpage>411</fpage>&#x02013;<lpage>23</lpage>. <pub-id pub-id-type="doi">10.1111/1467-9868.00293</pub-id></citation>
</ref>
<ref id="B35">
<label>35.</label>
<citation citation-type="book"><person-group person-group-type="author"><name><surname>Geiser</surname> <given-names>C</given-names></name></person-group>. <source>Data Analysis With Mplus</source>. <publisher-loc>New York</publisher-loc>: <publisher-name>Guilford</publisher-name> (<year>2012</year>).</citation>
</ref>
<ref id="B36">
<label>36.</label>
<citation citation-type="book"><person-group person-group-type="author"><name><surname>Muthen</surname> <given-names>LK</given-names></name> <name><surname>Muthen</surname> <given-names>BO</given-names></name></person-group>. <source>The comprehensive modeling program for applied researchers user guide.</source> <publisher-loc>Los Angeles</publisher-loc>: <publisher-name>Muth&#x000E9;n &#x00026; Muth&#x000E9;n</publisher-name> (<year>2003</year>).</citation>
</ref>
<ref id="B37">
<label>37.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Edefonti</surname> <given-names>V</given-names></name> <name><surname>Randi</surname> <given-names>G</given-names></name> <name><surname>La Vecchia</surname> <given-names>C</given-names></name> <name><surname>Ferraroni</surname> <given-names>M</given-names></name> <name><surname>Decarli</surname> <given-names>A</given-names></name></person-group>. <article-title>Dietary patterns and breast cancer: a review with focus on methodological issues</article-title>. <source>J Nutr Rev.</source> (<year>2009</year>) <volume>67</volume>:<fpage>297</fpage>&#x02013;<lpage>314</lpage>. <pub-id pub-id-type="doi">10.1111/j.1753-4887.2009.00203.x</pub-id><pub-id pub-id-type="pmid">19519672</pub-id></citation></ref>
<ref id="B38">
<label>38.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>von Eye</surname> <given-names>A</given-names></name> <name><surname>Bergman</surname> <given-names>LR</given-names></name></person-group>. <article-title>Research strategies in developmental psychopathology: Dimensional identity and the person-oriented approach</article-title>. <source>J Dev Psychopathol.</source> (<year>2003</year>) <volume>15</volume>:<fpage>553</fpage>&#x02013;<lpage>80</lpage>. <pub-id pub-id-type="doi">10.1017/S0954579403000294</pub-id><pub-id pub-id-type="pmid">14582932</pub-id></citation></ref>
<ref id="B39">
<label>39.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nurius</surname> <given-names>PS</given-names></name> <name><surname>Macy</surname> <given-names>RJ</given-names></name></person-group>. <article-title>Heterogeneity among violence-exposed women: applying person-oriented research methods</article-title>. <source>J Interpers Viol.</source> (<year>2008</year>) <volume>23</volume>:<fpage>389</fpage>&#x02013;<lpage>415</lpage>. <pub-id pub-id-type="doi">10.1177/0886260507312297</pub-id><pub-id pub-id-type="pmid">18245574</pub-id></citation></ref>
<ref id="B40">
<label>40.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Newby</surname> <given-names>PK</given-names></name> <name><surname>Muller</surname> <given-names>D</given-names></name> <name><surname>Hallfrisch</surname> <given-names>J</given-names></name> <name><surname>Andres</surname> <given-names>R</given-names></name> <name><surname>Tucker</surname> <given-names>KL</given-names></name></person-group>. <article-title>Food patterns measured by factor analysis and anthropometric changes in adults</article-title>. <source>Am J Clin Nutr.</source> (<year>2004</year>) <volume>80</volume>:<fpage>504</fpage>&#x02013;<lpage>13</lpage>. <pub-id pub-id-type="doi">10.1093/ajcn/80.2.504</pub-id><pub-id pub-id-type="pmid">15277177</pub-id></citation></ref>
<ref id="B41">
<label>41.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Knudsen</surname> <given-names>VK</given-names></name> <name><surname>Orozova-Bekkevold</surname> <given-names>IM</given-names></name> <name><surname>Mikkelsen</surname> <given-names>TB</given-names></name> <name><surname>Wolff</surname> <given-names>S</given-names></name> <name><surname>Olsen</surname> <given-names>SF</given-names></name></person-group>. <article-title>Major dietary patterns in pregnancy and fetal growth</article-title>. <source>Eur J Clin Nutr.</source> (<year>2008</year>) <volume>62</volume>:<fpage>463</fpage>&#x02013;<lpage>70</lpage>. <pub-id pub-id-type="doi">10.1038/sj.ejcn.1602745</pub-id><pub-id pub-id-type="pmid">17392696</pub-id></citation></ref>
<ref id="B42">
<label>42.</label>
<citation citation-type="book"><person-group person-group-type="author"><name><surname>McLachlan</surname> <given-names>GJ</given-names></name> <name><surname>Peel</surname> <given-names>D</given-names></name></person-group>. <source>Finite Mixture Models</source>. <publisher-loc>New York</publisher-loc>: <publisher-name>John Wiley &#x00026; Sons</publisher-name> (<year>2000</year>).</citation>
</ref>
<ref id="B43">
<label>43.</label>
<citation citation-type="book"><person-group person-group-type="author"><name><surname>Everitt</surname> <given-names>BS</given-names></name></person-group>. <source>Finite Mixture Distributions</source>. <publisher-loc>Wiley StatsRef</publisher-loc>: <publisher-name>Statistics Reference Online</publisher-name> (<year>2014</year>).</citation>
</ref>
<ref id="B44">
<label>44.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rosato</surname> <given-names>NS</given-names></name> <name><surname>Baer</surname> <given-names>JC</given-names></name></person-group>. <article-title>Latent class analysis: a method for capturing heterogeneity</article-title>. <source>Soc Work Res.</source> (<year>2012</year>) <volume>36</volume>:<fpage>61</fpage>&#x02013;<lpage>9</lpage>. <pub-id pub-id-type="doi">10.1093/swr/svs006</pub-id></citation>
</ref>
<ref id="B45">
<label>45.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brennan</surname> <given-names>SF</given-names></name> <name><surname>Cantwell</surname> <given-names>MM</given-names></name> <name><surname>Cardwell</surname> <given-names>CR</given-names></name> <name><surname>Velentzis</surname> <given-names>LS</given-names></name> <name><surname>Woodside</surname> <given-names>JV</given-names></name></person-group>. <article-title>Dietary patterns and breast cancer risk: a systematic review and meta-analysis</article-title>. <source>Am J Clin Nutr.</source> (<year>2010</year>) <volume>91</volume>:<fpage>1294</fpage>&#x02013;<lpage>302</lpage>. <pub-id pub-id-type="doi">10.3945/ajcn.2009.28796</pub-id><pub-id pub-id-type="pmid">30696460</pub-id></citation></ref>
<ref id="B46">
<label>46.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Albuquerque</surname> <given-names>RC</given-names></name> <name><surname>Baltar</surname> <given-names>VT</given-names></name> <name><surname>Marchioni</surname> <given-names>DM</given-names></name></person-group>. <article-title>Breast cancer and dietary patterns: a systematic review</article-title>. <source>Nutr Rev.</source> (<year>2014</year>) <volume>72</volume>:<fpage>1</fpage>&#x02013;<lpage>17</lpage>. <pub-id pub-id-type="doi">10.1111/nure.12083</pub-id><pub-id pub-id-type="pmid">24330083</pub-id></citation></ref>
<ref id="B47">
<label>47.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dandamudi</surname> <given-names>A</given-names></name> <name><surname>Tommie</surname> <given-names>J</given-names></name> <name><surname>Nommsen-Rivers</surname> <given-names>L</given-names></name> <name><surname>Couch</surname> <given-names>S</given-names></name></person-group>. <article-title>Dietary patterns and breast cancer risk: a systematic review</article-title>. <source>Anticancer Res.</source> (<year>2018</year>) <volume>38</volume>:<fpage>3209</fpage>&#x02013;<lpage>22</lpage>. <pub-id pub-id-type="doi">10.21873/anticanres.12586</pub-id><pub-id pub-id-type="pmid">30696460</pub-id></citation></ref>
<ref id="B48">
<label>48.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cui</surname> <given-names>X</given-names></name> <name><surname>Dai</surname> <given-names>Q</given-names></name> <name><surname>Tseng</surname> <given-names>M</given-names></name> <name><surname>Shu</surname> <given-names>XO</given-names></name> <name><surname>Gao</surname> <given-names>YT</given-names></name> <name><surname>Zheng</surname> <given-names>W</given-names></name></person-group>. <article-title>Dietary patterns and breast cancer risk in the shanghai breast cancer study</article-title>. <source>Cancer Epidemiol Prevent Biomark.</source> (<year>2007</year>) <volume>16</volume>:<fpage>1443</fpage>&#x02013;<lpage>8</lpage>. <pub-id pub-id-type="doi">10.1158/1055-9965.EPI-07-0059</pub-id><pub-id pub-id-type="pmid">17623805</pub-id></citation></ref>
<ref id="B49">
<label>49.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Butler</surname> <given-names>LM</given-names></name> <name><surname>Wu</surname> <given-names>AH</given-names></name> <name><surname>Wang</surname> <given-names>R</given-names></name> <name><surname>Koh</surname> <given-names>WP</given-names></name> <name><surname>Yuan</surname> <given-names>JM</given-names></name> <name><surname>Yu</surname> <given-names>MC</given-names></name></person-group>. <article-title>A vegetable-fruit-soy dietary pattern protects against breast cancer among postmenopausal Singapore Chinese women</article-title>. <source>Am J Clin Nutr.</source> (<year>2010</year>) <volume>91</volume>:<fpage>1013</fpage>&#x02013;<lpage>9</lpage>. <pub-id pub-id-type="doi">10.3945/ajcn.2009.28572</pub-id><pub-id pub-id-type="pmid">20181808</pub-id></citation></ref>
<ref id="B50">
<label>50.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname> <given-names>CX</given-names></name> <name><surname>Ho</surname> <given-names>SC</given-names></name> <name><surname>Fu</surname> <given-names>JH</given-names></name> <name><surname>Cheng</surname> <given-names>SZ</given-names></name> <name><surname>Chen</surname> <given-names>YM</given-names></name> <name><surname>Lin</surname> <given-names>FY</given-names></name></person-group>. <article-title>Dietary patterns and breast cancer risk among Chinese women</article-title>. <source>Cancer Causes Contl.</source> (<year>2011</year>) <volume>22</volume>:<fpage>115</fpage>&#x02013;<lpage>24</lpage>. <pub-id pub-id-type="doi">10.1007/s10552-010-9681-8</pub-id><pub-id pub-id-type="pmid">21080051</pub-id></citation></ref>
<ref id="B51">
<label>51.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Shin</surname> <given-names>S</given-names></name> <name><surname>Saito</surname> <given-names>E</given-names></name> <name><surname>Inoue</surname> <given-names>M</given-names></name> <name><surname>Sawada</surname> <given-names>N</given-names></name> <name><surname>Ishihara</surname> <given-names>J</given-names></name> <name><surname>Takachi</surname> <given-names>R</given-names></name> <etal/></person-group>. <article-title>Dietary pattern and breast cancer risk in Japanese women: the Japan Public Health Center-based Prospective Study (JPHC Study)</article-title>. <source>Br J Nutr.</source> (<year>2016</year>) <volume>115</volume>:<fpage>1769</fpage>&#x02013;<lpage>79</lpage>. <pub-id pub-id-type="doi">10.1017/S0007114516000684</pub-id><pub-id pub-id-type="pmid">26997498</pub-id></citation></ref>
<ref id="B52">
<label>52.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kojima</surname> <given-names>R</given-names></name> <name><surname>Okada</surname> <given-names>E</given-names></name> <name><surname>Ukawa</surname> <given-names>S</given-names></name> <name><surname>Mori</surname> <given-names>M</given-names></name> <name><surname>Wakai</surname> <given-names>K</given-names></name> <name><surname>Date</surname> <given-names>C</given-names></name> <etal/></person-group>. <article-title>Dietary patterns and breast cancer risk in a prospective Japanese study</article-title>. <source>Breast cancer.</source> (<year>2017</year>) <volume>24</volume>:<fpage>152</fpage>&#x02013;<lpage>60</lpage>. <pub-id pub-id-type="doi">10.1007/s12282-016-0689-0</pub-id><pub-id pub-id-type="pmid">26993124</pub-id></citation></ref>
<ref id="B53">
<label>53.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lu</surname> <given-names>S</given-names></name> <name><surname>Qian</surname> <given-names>Y</given-names></name> <name><surname>Huang</surname> <given-names>X</given-names></name> <name><surname>Yu</surname> <given-names>H</given-names></name> <name><surname>Yang</surname> <given-names>J</given-names></name> <name><surname>Han</surname> <given-names>R</given-names></name> <etal/></person-group>. <article-title>The association of dietary pattern and breast cancer in Jiangsu, China: A population-based case-control study</article-title>. <source>PLoS ONE.</source> (<year>2017</year>) <volume>12</volume>:<fpage>e0184453</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0184453</pub-id><pub-id pub-id-type="pmid">28898273</pub-id></citation></ref>
<ref id="B54">
<label>54.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bauer</surname> <given-names>DJ</given-names></name> <name><surname>Curran</surname> <given-names>PJ</given-names></name></person-group>. <article-title>Overextraction of latent trajectory classes: much ado about nothing? Reply to Rindskopf (2003), Muth&#x000E9;n (2003), and Cudeck and Henly (2003)</article-title>. <source>Psychol Methods.</source> (<year>2003</year>) <volume>8</volume>:<fpage>384</fpage>&#x02013;<lpage>93</lpage>. <pub-id pub-id-type="doi">10.1037/1082-989X.8.3.384</pub-id></citation>
</ref>
<ref id="B55">
<label>55.</label>
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>van de Schoot</surname> <given-names>R</given-names></name> <name><surname>Sijbrandij</surname> <given-names>M</given-names></name> <name><surname>Winter</surname> <given-names>SD</given-names></name> <name><surname>Depaoli</surname> <given-names>S</given-names></name> <name><surname>Vermunt</surname> <given-names>JK</given-names></name></person-group>. <article-title>The GRoLTS-checklist: guidelines for reporting on latent trajectory studies</article-title>. <source>Struct Eq Model.</source> (<year>2017</year>) <volume>24</volume>:<fpage>451</fpage>&#x02013;<lpage>67</lpage>. <pub-id pub-id-type="doi">10.1080/10705511.2016.1247646</pub-id></citation>
</ref>
</ref-list> 
</back>
</article>