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<journal-id journal-id-type="publisher-id">Front. Neurosci.</journal-id>
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<journal-title>Frontiers in Neuroscience</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Neurosci.</abbrev-journal-title>
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<issn pub-type="epub">1662-453X</issn>
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<publisher-name>Frontiers Media S.A.</publisher-name>
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<article-meta>
<article-id pub-id-type="doi">10.3389/fnins.2025.1753071</article-id>
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<article-categories>
<subj-group subj-group-type="heading">
<subject>Original Research</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Neurologists-level interpretable CT-based deep neural network for prediction of hemorrhagic transformation after ischemic stroke</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" equal-contrib="yes">
<name><surname>Zhang</surname> <given-names>Guanyi</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x02020;</sup></xref>
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<contrib contrib-type="author" equal-contrib="yes">
<name><surname>Jin</surname> <given-names>Yanrui</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
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<contrib contrib-type="author">
<name><surname>Wang</surname> <given-names>Mengxing</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
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<contrib contrib-type="author">
<name><surname>Han</surname> <given-names>Xu</given-names></name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
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<contrib contrib-type="author">
<name><surname>Tu</surname> <given-names>Yihui</given-names></name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
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<contrib contrib-type="author">
<name><surname>Li</surname> <given-names>Zixiao</given-names></name>
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<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
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<contrib contrib-type="author" corresp="yes" equal-contrib="yes">
<name><surname>Zhao</surname> <given-names>Xingquan</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="aff" rid="aff6"><sup>6</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x02021;</sup></xref>
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<contrib contrib-type="author" corresp="yes" equal-contrib="yes">
<name><surname>Zhang</surname> <given-names>Qian</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x02020;</sup></xref>
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<aff id="aff1"><label>1</label><institution>Department of Neurology, Beijing Tiantan Hospital, Capital Medical University</institution>, <city>Beijing</city>, <country country="cn">China</country></aff>
<aff id="aff2"><label>2</label><institution>China National Clinical Research Center for Neurological Diseases</institution>, <city>Beijing</city>, <country country="cn">China</country></aff>
<aff id="aff3"><label>3</label><institution>School of Mechanical Engineering, Shanghai Jiao Tong University</institution>, <city>Shanghai</city>, <country country="cn">China</country></aff>
<aff id="aff4"><label>4</label><institution>Department of Neurology, Guangrao People Hospital</institution>, <city>Dongying, Shandong</city>, <country country="cn">China</country></aff>
<aff id="aff5"><label>5</label><institution>Department of Mathematics, Shanghai University</institution>, <city>Shanghai</city>, <country country="cn">China</country></aff>
<aff id="aff6"><label>6</label><institution>Research Unit of Artificial Intelligence in Cerebrovascular Disease, Chinese Academy of Medical Sciences</institution>, <city>Beijing</city>, <country country="cn">China</country></aff>
<author-notes>
<corresp id="c001"><label>&#x0002A;</label>Correspondence: Xingquan Zhao, <email xlink:href="mailto:zxq@vip.163.com">zxq@vip.163.com</email>; Qian Zhang, <email xlink:href="mailto:gongchangqian@126.com">gongchangqian@126.com</email></corresp>
<fn fn-type="equal" id="fn001"><label>&#x02020;</label><p>These authors share first authorship</p></fn>
<fn fn-type="other" id="fn002"><label>&#x02021;</label><p>ORCID: Xingquan Zhao <uri xlink:href="https://orcid.org/0000-0001-8345-5147">orcid.org/0000-0001-8345-5147</uri>; Qian Zhang <uri xlink:href="https://orcid.org/0000-0003-3982-8270">orcid.org/0000-0003-3982-8270</uri></p></fn>
</author-notes>
<pub-date publication-format="electronic" date-type="pub" iso-8601-date="2026-01-14">
<day>14</day>
<month>01</month>
<year>2026</year>
</pub-date>
<pub-date publication-format="electronic" date-type="collection">
<year>2025</year>
</pub-date>
<volume>19</volume>
<elocation-id>1753071</elocation-id>
<history>
<date date-type="received">
<day>24</day>
<month>11</month>
<year>2025</year>
</date>
<date date-type="rev-recd">
<day>20</day>
<month>12</month>
<year>2025</year>
</date>
<date date-type="accepted">
<day>22</day>
<month>12</month>
<year>2025</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2026 Zhang, Jin, Wang, Han, Tu, Li, Zhao and Zhang.</copyright-statement>
<copyright-year>2026</copyright-year>
<copyright-holder>Zhang, Jin, Wang, Han, Tu, Li, Zhao and Zhang</copyright-holder>
<license>
<ali:license_ref start_date="2026-01-14">https://creativecommons.org/licenses/by/4.0/</ali:license_ref>
<license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License (CC BY)</ext-link>. The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p>
</license>
</permissions>
<abstract>
<sec>
<title>Background</title>
<p>Hemorrhagic transformation (HT) is a severe complication following acute ischemic stroke, associated with neurological deterioration and poor clinical outcomes. Deep learning represents a promising tool for HT prediction.</p></sec>
<sec>
<title>Methods</title>
<p>We conducted a retrospective analysis of 474 acute ischemic stroke cases (231 HT and 243 non-HT) admitted to Beijing Tiantan Hospital from April 2014 to November 2022. We constructed a dataset from this cohort and randomly partitioned it into training and validation sets. Subsequently, we developed a model utilizing convolutional neural networks (CNNs) and residual networks based on computed tomography (CT) scans to predict HT after ischemic stroke.</p></sec>
<sec>
<title>Results</title>
<p>The final dataset consisted of 613 CT scans. The model achieved an F1 score of 78.94% (95% CI, 67.7&#x02013;86.4). The Area Under the Curve (AUC) was 0.842 (95% CI, 75.8&#x02013;92.1), sensitivity was 71.55% (95% CI, 60.6%&#x02212;85.0%), and accuracy was 74.52% (95% CI, 63.9%&#x02212;83.2%).</p></sec>
<sec>
<title>Conclusion</title>
<p>By combining plain CT scans with deep learning methodologies, we developed a clinically applicable model with demonstrable interpretability. Primarily designed to predict HT after acute ischemic stroke, this model demonstrated significant performance advantages in testing compared to both clinical physicians and similar existing models.</p></sec></abstract>
<kwd-group>
<kwd>assisted decision making</kwd>
<kwd>computed tomography</kwd>
<kwd>deep neural network</kwd>
<kwd>hemorrhagic transformation</kwd>
<kwd>prediction</kwd>
<kwd>stroke</kwd>
</kwd-group>
<funding-group>
  <funding-statement>The author(s) declared that financial support was received for this work and/or its publication. This study was supported by the Noncommunicable Chronic Diseases-National Science and Technology Major Project (2024ZD0522200, 2024ZD0522203), National Science and Technology Major Project (2022ZD0118003, 2022ZD0211800), National Health Commission (W2024SNKT23), and Beijing Scholar (097).</funding-statement>
</funding-group>
<counts>
<fig-count count="3"/>
<table-count count="3"/>
<equation-count count="7"/>
<ref-count count="40"/>
<page-count count="8"/>
<word-count count="4622"/>
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<custom-meta-group>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Translational Neuroscience</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>Stroke is a devastating condition associated with high risks of disability, mortality, and recurrence, posing a significant socioeconomic burden (<xref ref-type="bibr" rid="B22">Liu et al., 2020</xref>). Over the past several decades, the global burden of stroke has continued to rise, driven by population growth, aging demographics, and the increasing prevalence of risk factors (<xref ref-type="bibr" rid="B15">Katan and Luft, 2018</xref>).</p>
<p>Hemorrhagic transformation (HT) after ischemic stroke is defined as the detection of bleeding on a follow-up computed tomography (CT) or magnetic resonance imaging (MRI) scan in patients with no evidence of hemorrhage on the initial post-infarction scan, or hemorrhagic infarction identifable on the initial scan (<xref ref-type="bibr" rid="B7">Chinese Society of Neurology Chinese Stroke Society, 2019</xref>). HT is a critical concern in the management of acute ischemic stroke and represents part of the natural history of cerebral infarction (<xref ref-type="bibr" rid="B25">Moulin et al., 1994</xref>). The clinical incidence of HT ranges from 2.2% to 44.0%, while the pathological incidence can reach up to 70% (<xref ref-type="bibr" rid="B3">Aviv et al., 2009</xref>). Current treatment options for ischemic stroke, including intravenous thrombolysis, endovascular therapy, anticoagulants, and antiplatelets (<xref ref-type="bibr" rid="B23">Mendelson and Prabhakaran, 2021</xref>), carry the risk of increasing the frequency and severity of HT (<xref ref-type="bibr" rid="B25">Moulin et al., 1994</xref>). Consequently, HT contributes significantly to the underutilization of reperfusion therapies and is associated with poor prognosis (<xref ref-type="bibr" rid="B36">Yaghi et al., 2015</xref>). Studies indicate that HT increases the risk of death by 8- to 10-fold (<xref ref-type="bibr" rid="B37">Yen et al., 2016</xref>), with evidence suggesting a higher bleeding propensity in Asian populations compared to Western populations (<xref ref-type="bibr" rid="B26">Shen et al., 2007</xref>; <xref ref-type="bibr" rid="B29">Ueshima and Matsuo, 2002</xref>; <xref ref-type="bibr" rid="B18">Kim et al., 2015</xref>). While symptomatic HT has garnered significant attention, the significance of asymptomatic HT remains controversial (<xref ref-type="bibr" rid="B12">Hacke et al., 2004</xref>; <xref ref-type="bibr" rid="B5">Berger et al., 2001</xref>; <xref ref-type="bibr" rid="B1">Albers et al., 2006</xref>; <xref ref-type="bibr" rid="B24">Molina et al., 2002</xref>; <xref ref-type="bibr" rid="B32">von Kummer, 2002</xref>; <xref ref-type="bibr" rid="B9">Dzialowski et al., 2007</xref>), despite its association with unfavorable long-term cognitive and neurological outcomes (<xref ref-type="bibr" rid="B21">Lei et al., 2014</xref>; <xref ref-type="bibr" rid="B9">Dzialowski et al., 2007</xref>).</p>
<p>Neuroimaging remains the principal method for predicting HT. Numerous studies have attempted to predict HT using non-contrast imaging signs, such as the hyperdense artery sign (<xref ref-type="bibr" rid="B28">Strbian et al., 2012</xref>), leukoaraiosis (<xref ref-type="bibr" rid="B33">Whiteley et al., 2012</xref>), collateral circulation (<xref ref-type="bibr" rid="B4">Bang et al., 2011</xref>), and hyperintense acute injury markers (<xref ref-type="bibr" rid="B17">Kidwell et al., 2008</xref>). Traditionally, logistic regression was the standard for analyzing prognostic data (<xref ref-type="bibr" rid="B2">Asadi et al., 2014</xref>). However, the emergence of machine learning and deep learning algorithms has demonstrated superior potential in outcome prediction and clinical decision support (<xref ref-type="bibr" rid="B39">Zihni et al., 2020</xref>; <xref ref-type="bibr" rid="B16">Khera et al., 2021</xref>). For instance, James et al. successfully employed support vector machines (SVM) to predict symptomatic HT following thrombolysis (<xref ref-type="bibr" rid="B14">James et al., 2018</xref>).</p>
<p>CT is an efficient, widely available diagnostic tool and serves as the primary imaging modality for acute ischemic stroke (<xref ref-type="bibr" rid="B31">Vilela and Rowley, 2017</xref>). In many resource-limited settings, non-contrast CT (NCCT) is often the sole imaging option available for initial evaluation. Given the variability in onset-to-visit times, we conducted a retrospective study using NCCT images obtained at various time points. Our study aims to present a novel deep-learning approach for predicting post-stroke HT using NCCT. This tool is intended to assist emergency neurologists in making informed medication decisions for high-risk patients.</p></sec>
<sec id="s2">
<title>Methods</title>
<p><xref ref-type="fig" rid="F1">Figure 1</xref> describes this prediction system in detail. The prediction system consists convolutional neural network (CNN) and Residual blocks, which are used to describe the deep characteristics of CT.</p>
<fig position="float" id="F1">
<label>Figure 1</label>
<caption><p>Method framework. A complete set of CT is given by the data preprocessing method. The model enables automatic prediction of HT and automatic selection of areas of interest useful for diagnosis.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnins-19-1753071-g0001.tif">
<alt-text content-type="machine-generated">Diagram showing a three-step process for medical imaging analysis. Step 1 features a CT scanner and image slices. Step 2 involves a feature extractor and classifier for HT prediction. Step 3 includes a medical professional, a checklist with &#x0201C;No HT&#x0201D; checked, and two brain images displaying CT and processed data.</alt-text>
</graphic>
</fig>
<sec>
<title>Dataset and partition</title>
<p>We retrospectively analyzed 474 patients with ischemic stroke admitted to Beijing Tiantan Hospital between April 2014 and November 2022, collecting both demographic and imaging data. HT was defined as the absence of bleeding on the initial CT/MRI scan, followed by the detection of bleeding on a subsequent scan. Patients were included only if their initial scan showed no evidence of HT and they underwent serial imaging during hospitalization.</p>
<p>Screening was based on clinical and imaging diagnoses reviewed by researchers; discrepancies were adjudicated by a three-expert committee. To reflect clinical reality, multiple images from the same patient (prior to HT onset) were incorporated. We included non-HT patients in a nearly 1:1 ratio, matched by age and gender. The dataset was randomly partitioned into a training set and a test set at a 9:1 ratio. Additionally, eight specialized neurologists were enlisted to evaluate the imaging data in the validation set. Blinded to clinical information and relying solely on NCCT images (conditions identical to the model), the clinicians predicted the probability of HT based on their experience. These predictions were subsequently compared with the model&#x00027;s output.</p>
</sec>
<sec>
<title>Data pre-processing</title>
<p>CT data were collected with a fixed layer thickness of 5 mm. However, due to individual and machine variations, the number of layers differed. We cropped the CT images to maintain a standardized frame count dimension of 28 for each input (<xref ref-type="supplementary-material" rid="SM1">Supplementary figure1</xref>).</p>
</sec>
<sec>
<title>CNN and residual block</title>
<p>CNN is presented and further explored by <xref ref-type="bibr" rid="B10">Fukushima (1980)</xref> and <xref ref-type="bibr" rid="B20">Lecun et al. (1998)</xref>. Due to the strong representative capability, CNN has been applied in different fields, such as mechanical metamaterial design (<xref ref-type="bibr" rid="B6">Bonfanti et al., 2020</xref>), biomedical application (<xref ref-type="bibr" rid="B19">Kusumoto et al., 2021</xref>; <xref ref-type="bibr" rid="B11">Green et al., 2022</xref>), and all-cause mortality prediction (<xref ref-type="bibr" rid="B30">Ulloa Cerna et al., 2021</xref>). However, some researchers (<xref ref-type="bibr" rid="B13">He et al., 2016</xref>) found an idea that the increasing of CNN layers cannot continuously improve the model performance but decrease the model performance. Thus, inspired by the insight of the article (<xref ref-type="bibr" rid="B13">He et al., 2016</xref>), we design different residual blocks for extracting deep features. The details of residual learning process are listed in the <xref ref-type="disp-formula" rid="EQ1">Equations 1</xref>, <xref ref-type="disp-formula" rid="EQ2">2</xref>.</p>
<disp-formula id="EQ1"><mml:math id="M1"><mml:mtable class="eqnarray" columnalign="left"><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mi>Y</mml:mi></mml:mrow><mml:mrow><mml:mi>L</mml:mi><mml:mo>,</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mi>F</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>X</mml:mi></mml:mrow><mml:mrow><mml:mi>L</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mrow><mml:mi>W</mml:mi></mml:mrow><mml:mrow><mml:mi>L</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mrow><mml:mi>b</mml:mi></mml:mrow><mml:mrow><mml:mi>L</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>&#x0002B;</mml:mo><mml:msub><mml:mrow><mml:mi>X</mml:mi></mml:mrow><mml:mrow><mml:mi>L</mml:mi></mml:mrow></mml:msub></mml:mtd></mml:mtr></mml:mtable></mml:math><label>(1)</label></disp-formula>
<disp-formula id="EQ2"><mml:math id="M2"><mml:mtable class="eqnarray" columnalign="left"><mml:mtr><mml:mtd><mml:msub><mml:mrow><mml:mi>Y</mml:mi></mml:mrow><mml:mrow><mml:mi>L</mml:mi><mml:mo>,</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mi>F</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mi>X</mml:mi></mml:mrow><mml:mrow><mml:mi>L</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mrow><mml:mi>W</mml:mi></mml:mrow><mml:mrow><mml:mi>L</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mrow><mml:mi>b</mml:mi></mml:mrow><mml:mrow><mml:mi>L</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>&#x0002B;</mml:mo><mml:msub><mml:mrow><mml:mi>H</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo></mml:mrow><mml:mi>X</mml:mi></mml:mrow><mml:mrow><mml:mi>L</mml:mi></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math><label>(2)</label></disp-formula>
<p>Where X represents input vectors, F(.) means the nonlinear mapping function and H(.) represents the linear shortcut function.</p>
<p><xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 2</xref> shows the designed different residual blocks. Residual block1 is used to process the input whose dimension is consistent with the output dimension. Additionally, Residual block2 is used to process the input whose dimension is inconsistent with the output dimension. To sum up, we apply CNNs and residual blocks for extracting deep characteristic of CT information for modeling HT prediction system.</p>
</sec>
<sec>
<title>The architecture</title>
<p><xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 3</xref> lists the architecture of the proposed CTNet, which includes CNN layer, residual blocks and HT predictor.</p>
<p>In CT data, the forms and positions of lesions in each layer of images are different, and subtle changes will affect the final prediction results. In this paper, CNN and residual blocks are used to automatically extract complex deep features and realize end-to-end recognition of CT image to HT prediction results. The pre-processed CT data is directly input into the CNN layer to extract the shallow layer information and increase the dimension of features. Then, two kinds of residual blocks designed in this paper are stacked in sequence to continuously extract deep features and ensure that model performance does not degrade. Finally, HT predictor is used to further process the deep features and get the prediction results.</p>
</sec>
<sec>
<title>Statistical approach</title>
<p>All statistical analyses were performed using Python (V3.8). We compared accuracy, sensitivity, positive predictive value (PPV), specificity, F1 score and Area Under the Curve (AUC) between the model and the eight neurology specialists. The calculation methods for the model evaluation metrics are as follows:</p>
<disp-formula id="EQ3"><mml:math id="M3"><mml:mtable class="eqnarray" columnalign="left"><mml:mtr><mml:mtd><mml:mi>A</mml:mi><mml:mi>c</mml:mi><mml:mi>c</mml:mi><mml:mi>u</mml:mi><mml:mi>r</mml:mi><mml:mi>a</mml:mi><mml:mi>c</mml:mi><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mi>T</mml:mi><mml:mi>P</mml:mi><mml:mo>&#x0002B;</mml:mo><mml:mi>T</mml:mi><mml:mi>N</mml:mi></mml:mrow><mml:mrow><mml:mi>T</mml:mi><mml:mi>P</mml:mi><mml:mo>&#x0002B;</mml:mo><mml:mi>T</mml:mi><mml:mi>N</mml:mi><mml:mo>&#x0002B;</mml:mo><mml:mi>F</mml:mi><mml:mi>P</mml:mi><mml:mo>&#x0002B;</mml:mo><mml:mi>F</mml:mi><mml:mi>N</mml:mi></mml:mrow></mml:mfrac></mml:mtd></mml:mtr></mml:mtable></mml:math><label>(3)</label></disp-formula>
<disp-formula id="EQ4"><mml:math id="M4"><mml:mtable class="eqnarray" columnalign="left"><mml:mtr><mml:mtd><mml:mi>S</mml:mi><mml:mi>e</mml:mi><mml:mi>n</mml:mi><mml:mi>s</mml:mi><mml:mi>i</mml:mi><mml:mi>t</mml:mi><mml:mi>i</mml:mi><mml:mi>v</mml:mi><mml:mi>i</mml:mi><mml:mi>t</mml:mi><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mi>T</mml:mi><mml:mi>P</mml:mi></mml:mrow><mml:mrow><mml:mi>T</mml:mi><mml:mi>P</mml:mi><mml:mo>&#x0002B;</mml:mo><mml:mi>F</mml:mi><mml:mi>N</mml:mi></mml:mrow></mml:mfrac></mml:mtd></mml:mtr></mml:mtable></mml:math><label>(4)</label></disp-formula>
<disp-formula id="EQ5"><mml:math id="M5"><mml:mtable class="eqnarray" columnalign="left"><mml:mtr><mml:mtd><mml:mi>P</mml:mi><mml:mi>P</mml:mi><mml:mi>V</mml:mi><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mi>T</mml:mi><mml:mi>P</mml:mi></mml:mrow><mml:mrow><mml:mi>T</mml:mi><mml:mi>P</mml:mi><mml:mo>&#x0002B;</mml:mo><mml:mi>F</mml:mi><mml:mi>P</mml:mi></mml:mrow></mml:mfrac></mml:mtd></mml:mtr></mml:mtable></mml:math><label>(5)</label></disp-formula>
<disp-formula id="EQ6"><mml:math id="M6"><mml:mtable class="eqnarray" columnalign="left"><mml:mtr><mml:mtd><mml:mi>S</mml:mi><mml:mi>p</mml:mi><mml:mi>e</mml:mi><mml:mi>c</mml:mi><mml:mi>i</mml:mi><mml:mi>f</mml:mi><mml:mi>i</mml:mi><mml:mi>c</mml:mi><mml:mi>i</mml:mi><mml:mi>t</mml:mi><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mi>T</mml:mi><mml:mi>N</mml:mi></mml:mrow><mml:mrow><mml:mi>T</mml:mi><mml:mi>N</mml:mi><mml:mo>&#x0002B;</mml:mo><mml:mi>F</mml:mi><mml:mi>P</mml:mi></mml:mrow></mml:mfrac></mml:mtd></mml:mtr></mml:mtable></mml:math><label>(6)</label></disp-formula>
<disp-formula id="EQ7"><mml:math id="M7"><mml:mtable class="eqnarray" columnalign="left"><mml:mtr><mml:mtd><mml:mi>F</mml:mi><mml:mn>1</mml:mn><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mn>2</mml:mn><mml:mo>&#x000D7;</mml:mo><mml:mi>S</mml:mi><mml:mi>e</mml:mi><mml:mi>n</mml:mi><mml:mo>&#x000D7;</mml:mo><mml:mi>P</mml:mi><mml:mi>P</mml:mi><mml:mi>V</mml:mi></mml:mrow><mml:mrow><mml:mi>S</mml:mi><mml:mi>e</mml:mi><mml:mi>n</mml:mi><mml:mo>&#x0002B;</mml:mo><mml:mi>P</mml:mi><mml:mi>P</mml:mi><mml:mi>V</mml:mi></mml:mrow></mml:mfrac></mml:mtd></mml:mtr></mml:mtable></mml:math><label>(7)</label></disp-formula></sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<p><xref ref-type="table" rid="T1">Table 1</xref> lists the details of the dataset. The cohort included 474 patients [mean age 62.45 &#x000B1; 11.85 years; 123 (25.95%) females]. Treatment modalities included thrombolysis (101, 21.31%), antiplatelet therapy (314, 66.24%), and anticoagulation (12, 2.53%). The dataset contained 611 CT images acquired at various time points, comprising 243 patients in the HT group and 231 in the non-HT group. The training set included 437 patients (548 images), while the test set included 61 patients (61 images).</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Baseline of dataset.</p></caption>
<table frame="box" rules="all">
<thead>
<tr>
<th valign="top" align="left"><bold>Characteristic</bold></th>
<th valign="top" align="center"><bold>Total set (<italic>n =</italic> 474)</bold></th>
<th valign="top" align="center"><bold>Training set (<italic>n =</italic> 437)</bold></th>
<th valign="top" align="center"><bold>Test set (<italic>n =</italic> 61)</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Age, years</td>
<td valign="top" align="center">62.45 &#x000B1; 11.85</td>
<td valign="top" align="center">62.47 &#x000B1; 11.70</td>
<td valign="top" align="center">63.33 &#x000B1; 13.13</td>
</tr>
<tr>
<td valign="top" align="left" colspan="4"><bold>Sex (</bold><italic><bold>N</bold></italic><bold>, %)</bold></td>
</tr>
<tr>
<td valign="top" align="left">Male</td>
<td valign="top" align="center">351 (74.05)</td>
<td valign="top" align="center">323 (73.91)</td>
<td valign="top" align="center">47 (77.05)</td>
</tr>
<tr>
<td valign="top" align="left">Female</td>
<td valign="top" align="center">123 (25.95)</td>
<td valign="top" align="center">114 (26.09)</td>
<td valign="top" align="center">14 (22.95)</td>
</tr>
<tr>
<td valign="top" align="left" colspan="4"><bold>Treatment (</bold><italic><bold>N</bold></italic><bold>, %)</bold></td>
</tr>
<tr>
<td valign="top" align="left">Antiplatelet agent</td>
<td valign="top" align="center">314 (66.24)</td>
<td valign="top" align="center">288 (65.9)</td>
<td valign="top" align="center">44 (72.14)</td>
</tr>
<tr>
<td valign="top" align="left">Anticoagulant agent</td>
<td valign="top" align="center">12 (2.53)</td>
<td valign="top" align="center">12 (2.75)</td>
<td valign="top" align="center">0 (0.00)</td>
</tr>
<tr>
<td valign="top" align="left">Thrombolytic agent</td>
<td valign="top" align="center">101 (21.31)</td>
<td valign="top" align="center">94 (21.51)</td>
<td valign="top" align="center">9 (14.75)</td>
</tr>
<tr>
<td valign="top" align="left">Not using the above drugs</td>
<td valign="top" align="center">41 (8.65)</td>
<td valign="top" align="center">37 (8.47)</td>
<td valign="top" align="center">8 (13.11)</td>
</tr>
<tr>
<td valign="top" align="left">Treatment not available</td>
<td valign="top" align="center">6 (1.27)</td>
<td valign="top" align="center">6 (1.37)</td>
<td valign="top" align="center">0 (0.00)</td>
</tr></tbody>
</table>
<table-wrap-foot>
<p><italic>N</italic> is the value after removing duplicates. Train set (<italic>n</italic> = 437) &#x0002B; Test set (<italic>n</italic> = 61) &#x02260; Total set (<italic>n</italic> = 474).</p>
</table-wrap-foot>
</table-wrap>
<sec>
<title>Testing and performance evaluation</title>
<p>We compared the performance of the deep learning model against neurology specialists on the test dataset. The results demonstrated that the deep learning model outperformed specialists across multiple metrics (<xref ref-type="table" rid="T2">Table 2</xref>). Specifically, the model achieved an F1 score of 78.94 (95% CI, 67.7&#x02013;86.4), surpassing the specialists, whose scores ranged from 43.92 to 66.26 (mean: 59.37). <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 4</xref> presents the ROC curves. The model achieved an AUC of 0.842 (95% CI, 0.758&#x02013;0.921), sensitivity of 71.55% (95% CI, 60.6&#x02013;85.0%), and accuracy of 74.52% (95% CI, 63.9&#x02013;83.2%). In contrast, specialist performance yielded a mean AUC of 0.677 (range: 0.630&#x02013;0.751), mean sensitivity of 45.48%, and mean accuracy of 60.41%. The consistency rate among specialists ranged from 0.61 to 0.87, while their agreement with the model ranged from 0.51 to 0.59. Detailed prediction results are presented in the confusion matrices (<xref ref-type="fig" rid="F2">Figure 2</xref>).</p>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>Comparison results of CTNet and clinicians (95% CI).</p></caption>
<table frame="box" rules="all">
<thead>
<tr>
<th valign="top" align="left"><bold>Evaluator</bold></th>
<th valign="top" align="center"><bold>Accuracy</bold></th>
<th valign="top" align="center"><bold>Sensitivity</bold></th>
<th valign="top" align="center"><bold>PPV</bold></th>
<th valign="top" align="center"><bold>Specificity</bold></th>
<th valign="top" align="center"><bold>F1</bold></th>
<th valign="top" align="center"><bold>AUC</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">CTNet</td>
<td valign="top" align="center"><bold>74.52 (63.9&#x02013;83.2)</bold></td>
<td valign="top" align="center"><bold>71.55 (60.6&#x02013;85.0)</bold></td>
<td valign="top" align="center">87.48 (79.5&#x02013;96.7)</td>
<td valign="top" align="center">80.29 (63.0&#x02013;94.2)</td>
<td valign="top" align="center"><bold>78.94 (67.7&#x02013;86.4)</bold></td>
<td valign="top" align="center"><bold>84.2 (75.8&#x02013;92.1)</bold></td>
</tr>
<tr>
<td valign="top" align="left">Clinician 1</td>
<td valign="top" align="center">64.00 (52.5&#x02013;73.8)</td>
<td valign="top" align="center">48.90 (30.6&#x02013;61.9)</td>
<td valign="top" align="center">91.87 (80.6&#x02013;100.0)</td>
<td valign="top" align="center">90.29 (77.3&#x02013;100.0)</td>
<td valign="top" align="center">65.22 (54.2&#x02013;74.5)</td>
<td valign="top" align="center">71.10 (60.1&#x02013;84.0)</td>
</tr>
<tr>
<td valign="top" align="left">Clinician 2</td>
<td valign="top" align="center">60.85 (47.5&#x02013;71.8)</td>
<td valign="top" align="center">56.80 (42.5&#x02013;71.9)</td>
<td valign="top" align="center">82.41 (72.7&#x02013;92.7)</td>
<td valign="top" align="center">78.00 (58.2&#x02013;90.5)</td>
<td valign="top" align="center">66.10 (54.1&#x02013;79.9)</td>
<td valign="top" align="center">65.98 (57.0&#x02013;79.4)</td>
</tr>
<tr>
<td valign="top" align="left">Clinician 3</td>
<td valign="top" align="center">56.89 (49.5&#x02013;63.9)</td>
<td valign="top" align="center">44.30 (23.6&#x02013;62.5)</td>
<td valign="top" align="center">89.64 (78.7&#x02013;100.0)</td>
<td valign="top" align="center">92.57 (85.7&#x02013;100.0)</td>
<td valign="top" align="center">56.26 (42.0&#x02013;68.5)</td>
<td valign="top" align="center">66.75 (59.1&#x02013;75.1)</td>
</tr>
<tr>
<td valign="top" align="left">Clinician 4</td>
<td valign="top" align="center">52.69 (45.9&#x02013;61.9)</td>
<td valign="top" align="center">28.30 (15.0&#x02013;41.9)</td>
<td valign="top" align="center"><bold>100.0 (100.0&#x02013;100.0)</bold></td>
<td valign="top" align="center"><bold>100.0 (100.0&#x02013;100.0)</bold></td>
<td valign="top" align="center">43.92 (30.6&#x02013;59.6)</td>
<td valign="top" align="center">65.02 (57.5&#x02013;74.7)</td>
</tr>
<tr>
<td valign="top" align="left">Clinician 5</td>
<td valign="top" align="center">60.82 (49.5&#x02013;71.8)</td>
<td valign="top" align="center">51.75 (38.1&#x02013;64.4)</td>
<td valign="top" align="center">78.17 (65.9&#x02013;90.0)</td>
<td valign="top" align="center">70.19 (52.4&#x02013;85.7)</td>
<td valign="top" align="center">62.56 (47.9&#x02013;75.0)</td>
<td valign="top" align="center">62.95 (53.0&#x02013;74.6)</td>
</tr>
<tr>
<td valign="top" align="left">Clinician 6</td>
<td valign="top" align="center">58.03 (47.9&#x02013;68.5)</td>
<td valign="top" align="center">39.55 (25.0&#x02013;56.4)</td>
<td valign="top" align="center">89.00 (75.0&#x02013;100.0)</td>
<td valign="top" align="center">89.62 (76.2&#x02013;100.0)</td>
<td valign="top" align="center">54.89 (39.6&#x02013;68.5)</td>
<td valign="top" align="center">64.59 (56.8&#x02013;72.1)</td>
</tr>
<tr>
<td valign="top" align="left">Clinician 7</td>
<td valign="top" align="center">62.75 (52.5&#x02013;72.1)</td>
<td valign="top" align="center">43.35 (32.5&#x02013;60.0)</td>
<td valign="top" align="center">95.05 (85.9&#x02013;100.0)</td>
<td valign="top" align="center">94.67 (85.7&#x02013;100.0)</td>
<td valign="top" align="center">59.77 (42.3&#x02013;71.0)</td>
<td valign="top" align="center">69.73 (61.8&#x02013;77.2)</td>
</tr>
<tr>
<td valign="top" align="left">Clinician 8</td>
<td valign="top" align="center">67.21 (57.7&#x02013;76.7)</td>
<td valign="top" align="center">50.90 (42.5&#x02013;63.9)</td>
<td valign="top" align="center"><bold>100.0 (100.0&#x02013;100.0)</bold></td>
<td valign="top" align="center"><bold>100.0 (100.0&#x02013;100.0)</bold></td>
<td valign="top" align="center">66.26 (52.5&#x02013;78.8)</td>
<td valign="top" align="center">75.12 (67.5&#x02013;81.0)</td>
</tr>
<tr>
<td valign="top" align="left">Average (clinician)</td>
<td valign="top" align="center">60.41</td>
<td valign="top" align="center">45.48</td>
<td valign="top" align="center">90.77</td>
<td valign="top" align="center">80.67</td>
<td valign="top" align="center">59.37</td>
<td valign="top" align="center">67.66</td>
</tr></tbody>
</table>
<table-wrap-foot>
<p>Bold values indicate the best performance for each metric.</p>
</table-wrap-foot>
</table-wrap>
<fig position="float" id="F2">
<label>Figure 2</label>
<caption><p>Confusion matrixes of the proposed method and clinicians.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnins-19-1753071-g0002.tif">
<alt-text content-type="machine-generated">Nine confusion matrices comparing predictions of different clinicians and a model labeled &#x0201C;Ours&#x0201D; regarding normal and abnormal cases. Each matrix is divided into four quadrants showing true positives, false positives, false negatives, and true negatives. The counts vary, indicating differences in predictive performance among the clinicians and the model.</alt-text>
</graphic>
</fig>
</sec>
<sec>
<title>Comparison with other models</title>
<p>Prior to our study, there was no existing research employing NCCT for HT prediction, rendering a comparative model analysis unfeasible. Earlier independent works by <xref ref-type="bibr" rid="B35">Wozniak et al. (2023)</xref> and colleagues, as well as <xref ref-type="bibr" rid="B27">Soundari et al. (2022)</xref> and associates, utilized NCCT in the detection of brain tumors and lung cancer respectively. In our study, we have replicated these aforementioned models, employing them for HT prediction using NCCT. The predictive outcomes are presented in <xref ref-type="table" rid="T3">Table 3</xref>.</p>
<table-wrap position="float" id="T3">
<label>Table 3</label>
<caption><p>Comparison results of CTNet and other models.</p></caption>
<table frame="box" rules="all">
<thead>
<tr>
<th valign="top" align="left"><bold>Model</bold></th>
<th valign="top" align="center"><bold>Accuracy</bold></th>
<th valign="top" align="center"><bold>Sensitivity</bold></th>
<th valign="top" align="center"><bold>Specificity</bold></th>
<th valign="top" align="center"><bold>F1</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">CTNet</td>
<td valign="top" align="center"><bold>74.52</bold></td>
<td valign="top" align="center">71.55</td>
<td valign="top" align="center"><bold>80.29</bold></td>
<td valign="top" align="center"><bold>78.94</bold></td>
</tr>
<tr>
<td valign="top" align="left">Marcin Woz nia</td>
<td valign="top" align="center">64.52</td>
<td valign="top" align="center">100.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">39.22</td>
</tr>
<tr>
<td valign="top" align="left">Soundari D V</td>
<td valign="top" align="center">64.52</td>
<td valign="top" align="center">100.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">39.22</td>
</tr></tbody>
</table>
<table-wrap-foot>
<p>Bold values indicate the best performance for each metric.</p>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>This study demonstrates the feasibility of using deep learning to predict HT after ischemic stroke, identifying potential risks even under conditions of complex and limited information. This tool aims to assist clinicians in individualized diagnosis, risk stratification, and the management of high-risk patients. Our model outperformed physicians in accuracy when utilizing only image information, presenting a novel approach for clinical HT prediction.</p>
<p>Unlike studies utilizing perfusion MRI (<xref ref-type="bibr" rid="B38">Yu et al., 2018</xref>), our approach employs NCCT, which is more accessible, faster, and widely applicable. While <xref ref-type="bibr" rid="B8">Dharmasaroja and Dharmasaroja (2012)</xref> achieved an AUC of 0.787 using machine learning on clinical data, a gap remains compared to CTNet&#x00027;s performance. Furthermore, while previous imaging studies focused on local features (<xref ref-type="bibr" rid="B28">Strbian et al., 2012</xref>; <xref ref-type="bibr" rid="B33">Whiteley et al., 2012</xref>; <xref ref-type="bibr" rid="B4">Bang et al., 2011</xref>; <xref ref-type="bibr" rid="B17">Kidwell et al., 2008</xref>), our deep learning approach analyzes complete CT images, allowing the network to learn a broader range of radiological features and their complex interconnections. Due to the unavailability of comprehensive clinical data, we were unable to assess clinical scale scores for our dataset. However, a multicenter trial of 3,035 AIS patients evaluated various scales for symptomatic HT, reporting AUCs ranging from 0.68 (IST-3) to 0.56 (SPAN-100) (<xref ref-type="bibr" rid="B34">Whiteley et al., 2014</xref>). In comparison, CTNet achieved an AUC of 0.842 (95% CI: 0.758&#x02013;0.921), demonstrating superior predictive capability.</p>
<p>Using attention heatmaps, we visualized the anatomical regions utilized by the model. In cases with visible lesions (<xref ref-type="fig" rid="F3">Figure 3a</xref>), the algorithm&#x00027;s focus correlated with the infarct area, confirming that the model effectively prioritized relevant pathological features. Notably, the model outperformed specialists in cases with low lesion visibility (<xref ref-type="fig" rid="F3">Figure 3b</xref>), where it attended to specific brain regions that doctors might overlook. This suggests that deep learning attention maps could uncover subtle early indicators of HT.</p>
<fig position="float" id="F3">
<label>Figure 3</label>
<caption><p>Examples of the predicted NCCT scan images alongside its corresponding attention heatmaps <bold>(a)</bold> When lesions are detectable on CT, the model focuses its attention on the lesion area. <bold>(b)</bold> In the early stage before lesions are visible on CT, the model&#x00027;s attention is distributed across the entire brain parenchyma.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnins-19-1753071-g0003.tif">
<alt-text content-type="machine-generated">Panel (a) shows two images: a CT scan of the lower head with a yellow arrow pointing to an area, and a corresponding heat map with color variations. Panel (b) displays a CT scan of the upper head and a matching heat map, both without arrows.</alt-text>
</graphic>
</fig>
<p>Deep neural networks (DNNs) have demonstrated significant potential in predicting hemorrhagic transformation (HT) following ischemic stroke, owing to their capacity to extract intricate features from extensive medical imaging datasets. Nevertheless, the current model requires further training and optimization to meet the rigorous demands of clinical application. Specifically, future research should prioritize enhancing the model&#x00027;s accuracy and generalizability by integrating heterogeneous data sources and refining the network architecture. Furthermore, validating the model within real-world clinical workflows is imperative to ascertain its feasibility and effectiveness in supporting decision-making. Ultimately, the development of robust and precise deep learning frameworks for HT prediction holds the promise of improving stroke management through earlier detection and personalized treatment strategies, thereby optimizing both short- and long-term patient outcomes.</p></sec>
<sec id="s5">
<title>Limitations of the study</title>
<p>Despite exhibiting promising performance, our current work still has some limitations. Firstly, due to the limited sample size, we were unable to stratify patients according to their different treatment plans, which can have a significant impact on the occurrence of HT. Secondly, we did not perform segmentation of the lesion area, as we considered that unknown features outside the lesion area may also contribute to the prediction accuracy. In future studies, it may be worth investigating the use of lesion segmentation to further enhance the model&#x00027;s predictive performance. Thirdly, we have yet to establish a model built on a multi-center database, which may lead to limitations in the generalization ability of our model. Our future objective is to develop a model that can incorporate multi-modal data. This will require integrating a comprehensive and easily obtainable set of clinical data with imaging data to improve the accuracy and robustness of our model. Moreover, in analyzing the heatmap of attention, we observed that the model displayed attention toward areas corresponding to the skull, potentially affecting its performance. This indicates a need to remove the skull during image preprocessing. Ultimately, we aim to apply this model in a clinical setting to provide individualized treatment plan support and assist in decision-making for each patient.</p></sec>
</body>
<back>
<sec sec-type="data-availability" id="s6">
<title>Data availability statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec sec-type="author-contributions" id="s7">
<title>Author contributions</title>
<p>GZ: Writing &#x02013; review &#x00026; editing, Writing &#x02013; original draft. YJ: Writing &#x02013; original draft, Writing &#x02013; review &#x00026; editing. MW: Formal analysis, Writing &#x02013; original draft. XH: Writing &#x02013; original draft, Data curation. YT: Formal analysis, Writing &#x02013; original draft. ZL: Writing &#x02013; review &#x00026; editing, Data curation. XZ: Writing &#x02013; review &#x00026; editing, Funding acquisition, Supervision. QZ: Writing &#x02013; review &#x00026; editing, Funding acquisition, Supervision.</p>
</sec>
<ack><title>Acknowledgments</title><p>The author would like to thank those colleagues who worked together and contributed to this article.</p></ack>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of interest</title>
<p>The author(s) declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="ai-statement" id="s9">
<title>Generative AI statement</title>
<p>The author(s) declared that generative AI was not used in the creation of this manuscript.</p>
<p>Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.</p></sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x00027;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="supplementary-material" id="s11">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fnins.2025.1753071/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fnins.2025.1753071/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Data_Sheet_1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink"/></sec>
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<fn-group>
<fn fn-type="custom" custom-type="edited-by" id="fn0001">
<p>Edited by: <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1116494/overview">Wei Wang</ext-link>, Zhejiang University, China</p>
</fn>
<fn fn-type="custom" custom-type="reviewed-by" id="fn0002">
<p>Reviewed by: <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1256663/overview">Hao Wang</ext-link>, Wenzhou Medical University, China</p>
<p><ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/3298801/overview">Ruyi Zhou</ext-link>, Harbin Institute of Technology, China</p>
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