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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Neurosci.</journal-id>
<journal-title>Frontiers in Neuroscience</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Neurosci.</abbrev-journal-title>
<issn pub-type="epub">1662-453X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fnins.2023.1236221</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Neuroscience</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Whole-brain structure&#x2013;function coupling abnormalities in mild cognitive impairment: a study combining amplitude of low-frequency fluctuations and voxel-based morphometry</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author"><name>
<surname>Zhao</surname>
<given-names>Rong</given-names>
</name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="fn0007" ref-type="author-notes"><sup>&#x2020;</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes"><name>
<surname>Wang</surname>
<given-names>Pan</given-names>
</name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="c001" ref-type="corresp"><sup>&#x002A;</sup></xref>
<xref rid="fn0007" ref-type="author-notes"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1438416/overview"/>
</contrib>
<contrib contrib-type="author"><name>
<surname>Liu</surname>
<given-names>Lin</given-names>
</name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="fn0007" ref-type="author-notes"><sup>&#x2020;</sup></xref>
</contrib>
<contrib contrib-type="author"><name>
<surname>Zhang</surname>
<given-names>Fanyu</given-names>
</name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2257282/overview"/>
</contrib>
<contrib contrib-type="author"><name>
<surname>Hu</surname>
<given-names>Peng</given-names>
</name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2075904/overview"/>
</contrib>
<contrib contrib-type="author"><name>
<surname>Wen</surname>
<given-names>Jiaping</given-names>
</name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author"><name>
<surname>Li</surname>
<given-names>Hongyi</given-names>
</name><xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes"><name>
<surname>Biswal</surname>
<given-names>Bharat B.</given-names>
</name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff3" ref-type="aff"><sup>3</sup></xref>
<xref rid="c001" ref-type="corresp"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/43120/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>MOE Key Laboratory for Neuroinformation, Center for Information in Medicine, School of Life Science and Technology, The Clinical Hospital of Chengdu Brain Science Institute, University of Electronic Science and Technology of China</institution>, <addr-line>Chengdu</addr-line>, <country>China</country></aff>
<aff id="aff2"><sup>2</sup><institution>The Fourth People&#x2019;s Hospital of Chengdu</institution>, <addr-line>Chengdu</addr-line>, <country>China</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Biomedical Engineering, New Jersey Institute of Technology</institution>, <addr-line>Newark, NJ</addr-line>, <country>United States</country></aff>
<author-notes>
<fn fn-type="edited-by" id="fn0008">
<p>Edited by: Steven D. Beyea, Izaak Walton Killam Health Centre, Canada</p>
</fn>
<fn fn-type="edited-by" id="fn0009">
<p>Reviewed by: Zhaohua Ding, Vanderbilt University, United States; Ryan D'Arcy, Simon Fraser University, Canada</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Bharat B. Biswal, <email>bbiswal@yahoo.com</email>; Pan Wang, <email>wpjoepan@163.com</email></corresp>
<fn fn-type="equal" id="fn0007">
<p><sup>&#x2020;</sup>These authors have contributed equally to this work</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>31</day>
<month>07</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>17</volume>
<elocation-id>1236221</elocation-id>
<history>
<date date-type="received">
<day>07</day>
<month>06</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>12</day>
<month>07</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2023 Zhao, Wang, Liu, Zhang, Hu, Wen, Li and Biswal.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Zhao, Wang, Liu, Zhang, Hu, Wen, Li and Biswal</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Alzheimer&#x2019;s disease (AD), one of the leading diseases of the nervous system, is accompanied by symptoms such as loss of memory, thinking and language skills. Both mild cognitive impairment (MCI) and very mild cognitive impairment (VMCI) are the transitional pathological stages between normal aging and AD. While the changes in whole-brain structural and functional information have been extensively investigated in AD, The impaired structure&#x2013;function coupling remains unknown. The current study employed the OASIS-3 dataset, which includes 53 MCI, 90 VMCI, and 100 Age-, gender-, and education-matched normal controls (NC). Several structural and functional parameters, such as the amplitude of low-frequency fluctuations (ALFF), voxel-based morphometry (VBM), and The ALFF/VBM ratio, were used To estimate The whole-brain neuroimaging changes In MCI, VMCI, and NC. As disease symptoms became more severe, these regions, distributed in the frontal-inf-orb, putamen, and paracentral lobule in the white matter (WM), exhibited progressively increasing ALFF (ALFF<sub>NC</sub> &#x003C;&#x2009;ALFF<sub>VMCI</sub> &#x003C;&#x2009;ALFF<sub>MCI</sub>), which was similar to the tendency for The cerebellum and putamen in the gray matter (GM). Additionally, as symptoms worsened in AD, the cuneus/frontal lobe in the WM and the parahippocampal gyrus/hippocampus in the GM showed progressively decreasing structure&#x2013;function coupling. As the typical focal areas in AD, The parahippocampal gyrus and hippocampus showed significant positive correlations with the severity of cognitive impairment, suggesting the important applications of the ALFF/VBM ratio in brain disorders. On the other hand, these findings from WM functional signals provided a novel perspective for understanding the pathophysiological mechanisms involved In cognitive decline in AD.</p>
</abstract>
<kwd-group>
<kwd>Alzheimer&#x2019;s disease</kwd>
<kwd>amplitude of low frequency fluctuations</kwd>
<kwd>structure&#x2013;function coupling</kwd>
<kwd>voxel-based morphometry</kwd>
<kwd>white matter</kwd>
</kwd-group>
<contract-num rid="cn1">2022ZD0208500</contract-num>
<contract-num rid="cn2">61871420</contract-num>
<contract-num rid="cn2">62171101</contract-num>
<contract-sponsor id="cn1">China MOST2030 Brain Project</contract-sponsor>
<contract-sponsor id="cn2">National Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content></contract-sponsor>
<counts>
<fig-count count="4"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="83"/>
<page-count count="12"/>
<word-count count="8627"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Brain Imaging Methods</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="sec1">
<title>Introduction</title>
<p>Alzheimer&#x2019;s disease (AD), a neurodegenerative disease primarily affecting the elderly, is marked by beta-amyloid plaques and neurofibrillary tau protein tangles (<xref ref-type="bibr" rid="ref62">Rosales-Corral et al., 2012</xref>). There are no effective therapies that have been shown to change the pathophysiology or course of AD that cause the disease&#x2019;s progression (<xref ref-type="bibr" rid="ref38">Harrington, 2012</xref>). Depending on the symptoms displayed, AD can be classified as mild, moderate, or severe. Mild cognitive impairment (MCI), as an intermediate stage between normal aging and AD (<xref ref-type="bibr" rid="ref13">Chandra et al., 2019</xref>), is mainly defined as neurocognitive impairment and does not meet the diagnostic criteria for dementia. Very mild cognitive impairment (VMCI) represents a transitional state between the cognitive changes of normal aging and the very early onset of dementia and is becoming increasingly recognized as a risk factor for Alzheimer&#x2019;s disease (<xref ref-type="bibr" rid="ref13">Chandra et al., 2019</xref>). Previous studies demonstrated that MCI is a significant risk factor for AD and that approximately 10 to 15% of MCI will eventually progress to AD (<xref ref-type="bibr" rid="ref58">Petersen et al., 2001</xref>; <xref ref-type="bibr" rid="ref60">Ronald et al., 2001</xref>). This is the reason why early assessment of MCI may help researchers discover the pathophysiological mechanisms of AD and provide new information for better treatment in the future (<xref ref-type="bibr" rid="ref79">Weller and Budson, 2018</xref>; <xref ref-type="bibr" rid="ref36">Gupta et al., 2020</xref>).</p>
<p>Neuroimaging research has been crucial in the clinical diagnosis of MCI and AD, and magnetic resonance imaging (MRI) modalities have proven useful in the identification of biomarkers for AD and MCI pathology (<xref ref-type="bibr" rid="ref54">McKhann et al., 2011</xref>). AD progression has been tracked with structural imaging techniques to demonstrate that atrophy spreads to the medial temporal lobe, parahippocampal, fusiform gyri, and orbitofrontal cortex (<xref ref-type="bibr" rid="ref48">Li et al., 2011</xref>). Atrophy in AD subjects is distributed in the frontal, parietal, and temporal lobes, whereas atrophy in MCI subjects is in the frontal and temporal lobes (<xref ref-type="bibr" rid="ref35">Guo et al., 2010</xref>). The aforementioned research on AD has focused on gray matter (GM) or white matter (WM) structures.</p>
<p>Blood oxygenation-level-dependent (BOLD) signals have primarily focused on the GM but are rarely reported on the WM (<xref ref-type="bibr" rid="ref53">Mazerolle et al., 2020</xref>; <xref ref-type="bibr" rid="ref1">Abramian et al., 2021</xref>). Gawryluk and colleagues comprehensively demonstrated the possibility that non-invasive fMRI techniques could detect the WM functional signals in the human brain, which laid a good foundation for the study of WM functional images in the future (<xref ref-type="bibr" rid="ref32">Gawryluk et al., 2014</xref>). The WM BOLD signal has recently been shown to play an important role in understanding cerebral intrinsic activity (<xref ref-type="bibr" rid="ref43">Ji et al., 2017</xref>; <xref ref-type="bibr" rid="ref24">Ding et al., 2018</xref>; <xref ref-type="bibr" rid="ref47">Li et al., 2019</xref>; <xref ref-type="bibr" rid="ref74">Wang et al., 2020</xref>). <xref ref-type="bibr" rid="ref43">Ji et al. (2017)</xref> demonstrated that the BOLD signal in the white matter varies with physiological states, closely correlating with structural features. <xref ref-type="bibr" rid="ref24">Ding et al. (2018)</xref> have found that BOLD signals in specific WM tracts are functionally correlated with specific GM regions during different tasks. The BOLD signals reflect changes in cerebral blood flow and volume and are used to study dynamic representations of brain activity (<xref ref-type="bibr" rid="ref14">Chen and Pike, 2009</xref>; <xref ref-type="bibr" rid="ref77">Wang et al., 2021</xref>). Blood flow and blood volume in WM are approximately 25% of those in GM (<xref ref-type="bibr" rid="ref63">Rostrup et al., 2000</xref>; <xref ref-type="bibr" rid="ref39">Helenius et al., 2003</xref>). In both GM and WM, resting-state BOLD fluctuations have similar low-frequency (0.01&#x2013;0.1&#x2009;Hz) signal power (<xref ref-type="bibr" rid="ref33">Gore et al., 2019</xref>; <xref ref-type="bibr" rid="ref76">Wang et al., 2022</xref>). Changes in BOLD signals in the WM reflect a distinct response to neuronal activity because they vary with baseline neural activity (<xref ref-type="bibr" rid="ref2">Abramian et al., 2020</xref>). Recent studies have shown that sensory stimulation evokes reliable BOLD responses along with a subset of fiber pathways (<xref ref-type="bibr" rid="ref41">Huang et al., 2018</xref>). After brief stimulation, WM bundles also show a transient signal response similar to GM but not identical to the characteristics of the hemodynamic response function of GM (<xref ref-type="bibr" rid="ref81">Wu et al., 2017</xref>). Thus, there is increasing evidence that WM exhibits resting-state fluctuations and a transient signal response (<xref ref-type="bibr" rid="ref25">Ding et al., 2016</xref>). These studies provide evidence that BOLD signals in WM are associated with functional activity in the human brain and deserve more attention from the neuroimaging community (<xref ref-type="bibr" rid="ref33">Gore et al., 2019</xref>).</p>
<p>The amplitude of low-frequency fluctuation (ALFF) has been used to measure the amplitude of low-frequency oscillations in resting-state fMRI, and it is defined as the total power within the frequency range from 0.01 to 0.1&#x2009;Hz (<xref ref-type="bibr" rid="ref37">Han et al., 2011</xref>; <xref ref-type="bibr" rid="ref22">Di et al., 2013</xref>; <xref ref-type="bibr" rid="ref82">Yang et al., 2018</xref>). The BOLD signals of resting-state fMRI are thought to represent spontaneous brain activity and are a good indicator of the regional intensity of spontaneous variations of ALFF (<xref ref-type="bibr" rid="ref31">Fox and Raichle, 2007</xref>). Previous research (<xref ref-type="bibr" rid="ref37">Han et al., 2011</xref>; <xref ref-type="bibr" rid="ref16">Chen et al., 2015</xref>; <xref ref-type="bibr" rid="ref73">Wang et al., 2016</xref>) has suggested that the ALFF measure can be used as a predictor for disease states such as MCI, tinnitus, and depression. A propensity for ALF<italic>F</italic> values to decrease as AD progresses can be seen in the right median and paracingulate gyri, bilateral inferior cerebellar lobes (which extend to the posterior cerebellum), bilateral precuneus, and the right anterior cingulate (<xref ref-type="bibr" rid="ref82">Yang et al., 2018</xref>; <xref ref-type="bibr" rid="ref51">Luo et al., 2020</xref>).</p>
<p>One potential area for indicators is structure-based neuroimaging research, with voxel-based morphometry (VBM) in particular serving as a well-established technique for identifying brain atrophy. In early AD prodromal stages, compared to healthy senior controls, VBM studies have found a high similarity in the olfactory cortex and hippocampus (<xref ref-type="bibr" rid="ref57">Pennanen et al., 2004</xref>; <xref ref-type="bibr" rid="ref70">Vasavada et al., 2015</xref>). Several atrophies in the temporal, parietal, posterior cingulate, frontal cortices, insula, and Rolandic eyes have been documented during the senile stage of AD (<xref ref-type="bibr" rid="ref26">Duarte et al., 2006</xref>). Lower GM volume was demonstrated by <xref ref-type="bibr" rid="ref61">Roquet et al. (2017)</xref> in the anterior cuneus, frontal lobe, insula, and extratemporal lobe. Axonal atrophy and demyelination were the findings of two early studies that described alterations in WM macro- and microstructure in AD (<xref ref-type="bibr" rid="ref10">Brun and Englund, 1986</xref>). Additionally, earlier research showed that ALFF and its association with fractional asymmetry in WM supported the idea that structure&#x2013;function coupling is a fundamental organizing principle in healthy subjects (<xref ref-type="bibr" rid="ref40">Honey et al., 2009</xref>; <xref ref-type="bibr" rid="ref72">Wang et al., 2015</xref>).</p>
<p>In the past, functional activity in predetermined brain areas has been examined using a mix of structural and functional brain imaging. The integration of functional and structural MRI, for instance, may provide complementary information to improve the diagnosis of MCI relative to either alone (error rate: 6% with both versus 15% with fMRI alone and 35% with sMRI alone), according to a classification study (<xref ref-type="bibr" rid="ref44">Kim and Lee, 2013</xref>). In order to comprehend the aberrant changes in brain diseases, it was essential to combine the anatomical and functional information from neuroimaging techniques.</p>
<p>The current study aimed to examine the functional and structural changes within the whole brain in AD by combining ALFF and VBM analysis. First, we separately investigated the abnormal ALFF and VBM within the whole brain. Then, the ALFF/VBM ratio would be adopted here as the regional-level measure. In addition, we analyzed the studies of structural-functional association <italic>via</italic> direct ALFF&#x2013;VBM comparisons. Furthermore, we analyzed the abnormal changes in whole-brain ALFF&#x2013;VBM coupling in the MCI and VMCI groups. Finally, we estimated the relationships between the above abnormal regions and the clinical manifestations of AD.</p>
</sec>
<sec sec-type="materials|methods" id="sec2">
<title>Materials and methods</title>
<p>In this study, we used 243 subjects in the publicly available OASIS-3 dataset<xref rid="fn0001" ref-type="fn"><sup>1</sup></xref>, with 53 MCI, 90 VMCI, and 100 normal control (NC) subjects. We collected resting-state functional images and T1-weighted anatomical images for each subject. All data were collected from the University of Washington Knight AD Research Center in various studies conducted over the past 15&#x2009;years. Written informed consent was obtained from all participants before collecting fMRI data. The dementia spectrum status of all patients was assessed using the Clinical Dementia Rating (CDR) scale (<xref ref-type="bibr" rid="ref55">Morris, 1993</xref>). According to the CDR, all AD patients were divided into NC (CDR&#x2009;=&#x2009;0), VMCI (CDR&#x2009;=&#x2009;0.5), and MCI (CDR&#x2009;=&#x2009;1), respectively. The severity of cognitive impairment was assessed based on the Mini-Mental State Examination (MMSE; <xref ref-type="bibr" rid="ref30">Folstein et al., 1975</xref>). Detailed demographic and clinical information is described in <xref rid="tab1" ref-type="table">Table 1</xref>.</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Demographic and clinical characteristics of the subjects.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Characteristics</th>
<th align="center" valign="top">NC (<italic>N</italic> =&#x2009;100)</th>
<th align="center" valign="top">VMCI (<italic>N</italic> =&#x2009;90)</th>
<th align="center" valign="top">MCI (<italic>N</italic> =&#x2009;53)</th>
<th align="center" valign="top"><italic>p</italic> Value</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Age</td>
<td align="center" valign="top">74.41&#x2009;&#x00B1;&#x2009;8.227</td>
<td align="center" valign="top">74.76&#x2009;&#x00B1;&#x2009;7.668</td>
<td align="center" valign="top">75.89&#x2009;&#x00B1;&#x2009;8.554</td>
<td align="center" valign="top"><italic>p</italic> =&#x2009;0.4940<xref rid="tfn1" ref-type="table-fn"><sup>a</sup></xref></td>
</tr>
<tr>
<td align="left" valign="top">Gender (M/F)</td>
<td align="center" valign="top">50/50</td>
<td align="center" valign="top">48/42</td>
<td align="center" valign="top">33/20</td>
<td align="center" valign="top"><italic>p</italic> =&#x2009;0.3471<xref rid="tfn2" ref-type="table-fn"><sup>b</sup></xref></td>
</tr>
<tr>
<td align="left" valign="top">Education</td>
<td align="center" valign="top">14.32&#x2009;&#x00B1;&#x2009;1.757</td>
<td align="center" valign="top">14.59&#x2009;&#x00B1;&#x2009;3.016</td>
<td align="center" valign="top">14.75&#x2009;&#x00B1;&#x2009;3.204</td>
<td align="center" valign="top"><italic>p</italic> =&#x2009;0.8438<xref rid="tfn1" ref-type="table-fn"><sup>a</sup></xref></td>
</tr>
<tr>
<td align="left" valign="top">Mean FD</td>
<td align="center" valign="top">0.2825&#x2009;&#x00B1;&#x2009;0.1504</td>
<td align="center" valign="top">0.3022&#x2009;&#x00B1;&#x2009;0.1756</td>
<td align="center" valign="top">0.3148&#x2009;&#x00B1;&#x2009;0.1489</td>
<td align="center" valign="top"><italic>p</italic> =&#x2009;0.2808<xref rid="tfn1" ref-type="table-fn"><sup>a</sup></xref></td>
</tr>
<tr>
<td align="left" valign="top">MMSE</td>
<td align="center" valign="top">28.86&#x2009;&#x00B1;&#x2009;1.318</td>
<td align="center" valign="top">25.99&#x2009;&#x00B1;&#x2009;2.882</td>
<td align="center" valign="top">22.08&#x2009;&#x00B1;&#x2009;4.057</td>
<td align="center" valign="top"><italic>p</italic> &#x003C;&#x2009;0.001<xref rid="tfn1" ref-type="table-fn"><sup>a</sup></xref></td>
</tr>
<tr>
<td align="left" valign="top">Handedness (L/R)</td>
<td align="center" valign="top">0/100</td>
<td align="center" valign="top">0/90</td>
<td align="center" valign="top">0/53</td>
<td/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>M&#x2009;=&#x2009;male patient; F&#x2009;=&#x2009;female patient; L&#x2009;=&#x2009;left; MMSE&#x2009;=&#x2009;mini-mental state examination; FD&#x2009;=&#x2009;framewise displacement; MCI&#x2009;=&#x2009;mild cognitive impairment; NC&#x2009;=&#x2009;normal controls; R&#x2009;=&#x2009;right; VMCI&#x2009;=&#x2009;very mild cognitive impairment.</p>
<fn id="tfn1">
<label>a</label>
<p>One-way ANOVA (using a nonparametric test).</p>
</fn>
<fn id="tfn2">
<label>b</label>
<p>Chi-squared.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<sec id="sec3">
<title>Data acquisition</title>
<p>All of the OASIS MRI datasets used in this study were imported on a 3-T Siemens Trio Tim scanner. During the scanning session, each subject was asked to keep their eyes closed with no significant head movement and not to fall asleep or think systematically. The resting-state functional imaging acquisition parameters were as follows: voxel size&#x2009;=&#x2009;4&#x2009;&#x00D7;&#x2009;4&#x2009;&#x00D7;&#x2009;4&#x2009;mm<sup>3</sup>, echo time&#x2009;=&#x2009;27&#x2009;ms, repetition time&#x2009;=&#x2009;2.2&#x2009;s, flip angle&#x2009;=&#x2009;90&#x00B0;, slice thickness&#x2009;=&#x2009;4&#x2009;mm, number of time points&#x2009;=&#x2009;164. The high spatial resolution three-dimension T1-weighted anatomical images were acquired with the following parameters: voxel size&#x2009;=&#x2009;1&#x2009;&#x00D7;&#x2009;1&#x2009;&#x00D7;&#x2009;1&#x2009;mm<sup>3</sup>, echo time&#x2009;=&#x2009;3.16&#x2009;ms, repetition time&#x2009;=&#x2009;2.4&#x2009;s, flip angle&#x2009;=&#x2009;8&#x00B0;, slice thickness&#x2009;=&#x2009;1&#x2009;mm.</p>
</sec>
<sec id="sec4">
<title>Data preprocessing</title>
<sec id="sec5">
<title>Functional images</title>
<p>The functional MRI dataset was preprocessed using the Data Processing Assistant for Resting-State fMRI<xref rid="fn0002" ref-type="fn"><sup>2</sup></xref> and SPM12 software<xref rid="fn0003" ref-type="fn"><sup>3</sup></xref> toolkits. The preprocessing steps included: discarding the first 5 volumes, correcting for head motion-related signal changes, and co-registering individual T1-weighted structural images to the mean functional image. Each structural image was segmented into GM, WM, and cerebrospinal fluid (CSF) using the DARTEL segmentation algorithm. Linear trends were removed to correct for signal drift. The mean signal from CSF and 24 rigid body motion parameters (six head motion parameters, six values at previous time points of six head motion parameters, and the 12 corresponding squared items) were regressed from the functional images. Scrubbing using motion &#x201C;spikes&#x201D; was performed as separate regressors, identified by framewise displacement (FD) greater than 1&#x2009;mm to further reduce the effect of head motion. The head motion scrubbing regressors were used in this study as they have been shown to be effective in eliminating the effect of head motion at the spike on the signal without changing the correlation values (<xref ref-type="bibr" rid="ref59">Power et al., 2012</xref>). Temporal filtering was performed in the low-frequency range of 0.01&#x2013;0.1&#x2009;Hz. To avoid mixing of WM and GM signals, the functional images were minimally spatially smoothed (4&#x2009;mm full-width half-maximum [FWHM], isotropic) separately in the WM and GM templates for each subject. The WM and GM voxels were identified by using the segmentation results from each subject (using a threshold of 0.5 in the SPM12&#x2019;s tissue segmentation). Following smoothing, the functional image was normalized to the Montreal Neurological Institute (MNI) space of 3&#x2009;&#x00D7;&#x2009;3&#x2009;&#x00D7;&#x2009;3&#x2009;mm<sup>3</sup>.</p>
</sec>
</sec>
<sec id="sec6">
<title>Creation of group-level WM and GM masks</title>
<p>To create WM and GM masks at the group level, we used the T1 segmentation images to identify the binarized WM and GM masks based on the maximum probability of each voxel within the whole brain for each subject. Subsequently, we averaged these WM and GM masks across all subjects. The group-level WM mask was defined by using the following two steps: (1) a threshold of more than 60% of subjects was used to determine the binarized anatomical mask, in line with previous studies on WM functional signals (<xref ref-type="bibr" rid="ref53">Mazerolle et al., 2020</xref>; <xref ref-type="bibr" rid="ref76">Wang et al., 2022</xref>); (2) the voxels of the anatomical mask were then selected and recognized as the group-level WM mask in more than 80% of subjects in the functional data. Finally, to exclude the influence of deep brain structures, we removed subcortical areas using the Harvard-Oxford atlas. In addition, for the group-level GM mask, a loose threshold &#x003E;&#x2009;20% was used to identify the GM mask that contains almost all GM voxels. The voxels in the resulting mask were then selected, and the group-level GM mask was defined using voxels that were present in more than 80% of subjects in the functional data.</p>
</sec>
<sec id="sec7">
<title>Structure&#x2013;function coupling analysis</title>
<sec id="sec8">
<title>Amplitude of low-frequency fluctuations analysis</title>
<p>For the calculation of voxel-wise power associated with low-frequency fluctuations, whole-brain ALFF was calculated for each subject using the DPABI package (DPABI_V6.0_210501).<xref rid="fn0004" ref-type="fn"><sup>4</sup></xref> After preprocessing the functional images, the time series of each voxel was filtered (band-pass, 0.01&#x2013;0.1&#x2009;Hz) to eliminate the effects of high-frequency drift and low-frequency noise (<xref ref-type="bibr" rid="ref9">Biswal et al., 1995</xref>; <xref ref-type="bibr" rid="ref59">Power et al., 2012</xref>). For each voxel, the time series was converted to the frequency domain by a fast Fourier transform. The ALFF in a given voxel is defined as the average square root value of the power spectrum in the frequency interval 0.01&#x2013;0.1&#x2009;Hz (<xref ref-type="bibr" rid="ref83">Zang et al., 2012</xref>).</p>
</sec>
<sec id="sec9">
<title>Voxel-based morphometry analysis</title>
<p>Anatomical images were analyzed using an optimized computational anatomy toolbox with the CAT 12 package in MATLAB.<xref rid="fn0005" ref-type="fn"><sup>5</sup></xref> The procedure is relatively straightforward and involves spatially normalizing high-resolution images from all the subjects in the study into the same stereotactic space. GM and WM are then segmented from the spatially normalized images, and the images are smoothed. Voxel-wise parametric statistical tests comparing the smoothed GM and WM images from the three groups are performed. Corrections for multiple comparisons are performed using Gaussian random field (GRF) theory.</p>
</sec>
<sec id="sec10">
<title>Amplitude of low-frequency fluctuations and voxel-based morphometry coupling analysis</title>
<p>After calculating the ALFF and VBM as described above, we can obtain the ALFF map for each subject and the corresponding VBM map. For each subject, we co-registered the ALFF map with the corresponding VBM map, and then the voxel value of ALFF was divided by that of VBM for each voxel.</p>
</sec>
</sec>
<sec id="sec11">
<title>Statistical analysis</title>
<p>A one-way ANOVA analysis was performed using the DPABI software. We performed it on the ALFF maps within group-level GM masks among the NC, VMCI, and MCI groups while controlling for the effects of age, gender, and education. We used GRF correction (voxel-level: <italic>p</italic>&#x2009;&#x003C;&#x2009;0.001, cluster level: <italic>p</italic>&#x2009;&#x003C;&#x2009;0.01) to estimate the statistical significance. Subsequently, the above abnormal clusters were obtained for <italic>post hoc</italic> analysis and were compared using the two-sample t-test with age, gender, and education as covariates (two-tailed, <italic>p</italic>&#x2009;&#x003C;&#x2009;0.05, Bonferroni-corrected for multiple comparisons (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05/<italic>n</italic>), <italic>n</italic> is the number of abnormal regions). For abnormal ALFF in the WM, we repeated the above analysis process. In addition, using the same statistical analysis process, we investigated the abnormal VBM and function&#x2013;structure coupling in the GM/WM, respectively.</p>
</sec>
</sec>
<sec sec-type="results" id="sec12">
<title>Results</title>
<sec id="sec13">
<title>Abnormal ALFF in the GM/WM</title>
<p>Using the ALFF measure, we identified seven abnormal areas distributed in the GM and WM (<xref rid="fig1" ref-type="fig">Figure 1</xref>; <xref rid="tab2" ref-type="table">Table 2</xref>). Specifically, compared to NC, patients with MCI and VMCI showed significantly increased ALFF in the GM distributed in Cerebellum-VIII-L (CR-VIII.L), Vermis-VIII (VM-VIII). and Cerebellum-VII-R (CR-VIII.R), but no difference between VMCI and MCI. Moreover, compared to NC, we found abnormally increased ALFF distributed in the putamen (PUT.R) in MCI.</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>Whole-brain ALFF changes. Brain map shows the abnormal clusters within GM and WM, respectively. Histogram shows the post-hoc analysis results between NC, VMCI and MCI. <bold>(A)</bold> and <bold>(B)</bold> represent the ALFF changes within GM and WM, respectively. The statistic significant level is performed with GRF correction (voxel-level: <italic>p</italic> &#x003C; 0.001, cluster-level: <italic>p</italic> &#x003C; 0.01).</p>
</caption>
<graphic xlink:href="fnins-17-1236221-g001.tif"/>
</fig>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption>
<p>The abnormal ALFF and structure&#x2013;function coupling regions in the GM and WM.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Regions</th>
<th align="center" valign="top">MNI coordinates</th>
<th align="center" valign="top">Peak value (<italic>F</italic> value)</th>
<th align="center" valign="top">Cluster size</th>
<th align="center" valign="top">VMCI vs. MCI (<italic>U</italic>/<italic>P</italic> value)</th>
<th align="center" valign="top">VMCI vs. HC (<italic>U</italic>/<italic>P</italic> value)</th>
<th align="center" valign="top">MCI vs. HC (<italic>U</italic>/<italic>P</italic> value)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top" colspan="7">Abnormal ALFF in the GM</td>
</tr>
<tr>
<td align="left" valign="top">Cerebellum-VII-L</td>
<td align="center" valign="top">&#x2212;21,-66,-54</td>
<td align="center" valign="top">12.09</td>
<td align="center" valign="top">30</td>
<td align="center" valign="top">1965/0.0795</td>
<td align="center" valign="top">3295/0.0014<sup>&#x002A;</sup></td>
<td align="center" valign="top">1,483/&#x003C;0.0001<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="top">Cerebellum-VII-R</td>
<td align="center" valign="top">15,-60,-57</td>
<td align="center" valign="top">12.18</td>
<td align="center" valign="top">28</td>
<td align="center" valign="top">1932/0.0584</td>
<td align="center" valign="top">3311/0.0016<sup>&#x002A;</sup></td>
<td align="center" valign="top">1,549/&#x003C;0.0001<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="top">Vermis-VII</td>
<td align="center" valign="top">0,-69,-42</td>
<td align="center" valign="top">11.38</td>
<td align="center" valign="top">24</td>
<td align="center" valign="top">1861/0.0283</td>
<td align="center" valign="top">3247/0.0009<sup>&#x002A;</sup></td>
<td align="center" valign="top">1,433/&#x003C;0.0001<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="top">Putamen-R</td>
<td align="center" valign="top">21,9,3</td>
<td align="center" valign="top">13.67</td>
<td align="center" valign="top">13</td>
<td align="center" valign="top">1801/0.0144</td>
<td align="center" valign="top">3741/0.0449</td>
<td align="center" valign="top">1,600/&#x003C;0.0001<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="top" colspan="7">Abnormal ALFF in the WM</td>
</tr>
<tr>
<td align="left" valign="top">Frontal-Inf-Orb-L</td>
<td align="center" valign="top">&#x2212;15,-21,45</td>
<td align="center" valign="top">15.31</td>
<td align="center" valign="top">47</td>
<td align="center" valign="top">1589/0.0008<sup>&#x002A;</sup></td>
<td align="center" valign="top">3599/0.0171</td>
<td align="center" valign="top">1,382/&#x003C;0.0001<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="top">Putamen-R</td>
<td align="center" valign="top">24,21,0</td>
<td align="center" valign="top">14.30</td>
<td align="center" valign="top">39</td>
<td align="center" valign="top">1494/0.0002<sup>&#x002A;</sup></td>
<td align="center" valign="top">3542/0.0112<sup>&#x002A;</sup></td>
<td align="center" valign="top">1,296/&#x003C;0.0001<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="top">Paracentral-Lobule-L</td>
<td align="center" valign="top">&#x2212;24,21,-12</td>
<td align="center" valign="top">15.69</td>
<td align="center" valign="top">21</td>
<td align="center" valign="top">1696/0.0038<sup>&#x002A;</sup></td>
<td align="center" valign="top">3378/0.0029<sup>&#x002A;</sup></td>
<td align="center" valign="top">1,302/&#x003C;0.0001<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="middle" colspan="7">Abnormal structure&#x2013;function coupling ratio in the GM</td>
</tr>
<tr>
<td align="left" valign="top">Cerebellum-VII-R</td>
<td align="center" valign="top">21,-60,-57</td>
<td align="center" valign="top">9.12</td>
<td align="center" valign="top">16</td>
<td align="center" valign="top">2222/0.4983</td>
<td align="center" valign="top">3,005/&#x003C;0.0001<sup>&#x002A;</sup></td>
<td align="center" valign="top">1887/0.0033<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="top">ParaHippocampal-R</td>
<td align="center" valign="top">21,-9,-6</td>
<td align="center" valign="top">21.65</td>
<td align="center" valign="top">146</td>
<td align="center" valign="top">1747/0.0074<sup>&#x002A;</sup></td>
<td align="center" valign="top">2064/&#x003C;0.0001<sup>&#x002A;</sup></td>
<td align="center" valign="top">600/&#x003C;0.0001<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="top">Hippocampus-L</td>
<td align="center" valign="top">&#x2212;24,-12,-6</td>
<td align="center" valign="top">20.61</td>
<td align="center" valign="top">112</td>
<td align="center" valign="top">1625/0.0014<sup>&#x002A;</sup></td>
<td align="center" valign="top">2,211/&#x003C;0.0001<sup>&#x002A;</sup></td>
<td align="center" valign="top">671/&#x003C;0.0001<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="top" colspan="7">Abnormal structure&#x2013;function coupling ratio in the WM</td>
</tr>
<tr>
<td align="left" valign="top">Cuneus-R</td>
<td align="center" valign="top">15,-84,18</td>
<td align="center" valign="top">10.99</td>
<td align="center" valign="top">17</td>
<td align="center" valign="top">1984/0.0942</td>
<td align="center" valign="top">3209/0.0006<sup>&#x002A;</sup></td>
<td align="center" valign="top">1,480/&#x003C;0.0001<sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="top">Frontal Lobe</td>
<td align="center" valign="top">&#x2212;2,-21,45</td>
<td align="center" valign="top">13.82</td>
<td align="center" valign="top">15</td>
<td align="center" valign="top">1801/0.0144<sup>&#x002A;</sup></td>
<td align="center" valign="top">3526/0.0099<sup>&#x002A;</sup></td>
<td align="center" valign="top">1,390/&#x003C;0.0001<sup>&#x002A;</sup></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><sup>&#x002A;</sup>Represents a significant level with statistical correction (Bonferroni-corrected for multiple comparisons (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05/<italic>n</italic>), <italic>n</italic> is the number of abnormal regions).</p>
</table-wrap-foot>
</table-wrap>
<p>In addition, we observed abnormally increased ALFF in the WM, which was similar to the increased pattern in GM (<xref rid="fig1" ref-type="fig">Figure 1B</xref>). In detail, compared to NC, patients with MCI and VMCI showed significantly increased ALFF in Putamen-R (PUT-WM) and Paracentral-Lobule-L (PCL-WM). We also found significant differences in the above WM regions between the MCI and VMCI groups. In addition, we observed increased ALFF in the frontal-inf-orb-L (ORBinf-WM) area in the MCI group compared to the comparison, but no difference between VMCI and NC.</p>
</sec>
<sec id="sec14">
<title>Abnormal VBM in the GM/WM</title>
<p>To estimate the structural abnormality in the early stages of AD, we performed the VBM analysis in the present study. Compared to NC, patients with MCI and VMCI showed significantly reduced GM volume distributed in the frontal lobe, temporal lobe, cerebellum, hippocampus, fusiform gyrus, and precuneus. In addition, compared to the VMCI group, MCI showed significantly reduced volume in the bilateral precentral gyrus and postcentral gyrus. Furthermore, in comparison to VMCI, MCI showed mild GM atrophy distributed in the middle temporal lobe and medial frontal lobe (<xref rid="fig2" ref-type="fig">Figure 2A</xref>). We also found that the MCI and VMCI groups showed significantly decreased volume in the WM, mainly distributed in the right insula, rolandic operculum, and superior temporal lobe (<xref rid="fig2" ref-type="fig">Figure 2B</xref>).</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>Brain regions with abnormal VBM between patient groups and NC subjects, GM <bold>(A)</bold> and WM <bold>(B)</bold> based on <italic>post-hoc T</italic>-tests. Blue and yellow colors denote decreased and increased VBM. The yellow arrow shows the corresponding brain region. The color bars indicate the <italic>T</italic>-value (GRF correction, voxel-level: <italic>p</italic>&#x2009;&#x003C;&#x2009;0.001, cluster level: <italic>p</italic>&#x2009;&#x003C;&#x2009;0.01).</p>
</caption>
<graphic xlink:href="fnins-17-1236221-g002.tif"/>
</fig>
</sec>
<sec id="sec15">
<title>Abnormal ALFF/VBM coupling results in the GM/WM</title>
<p>Using the structure&#x2013;function coupling measure, we found five abnormal clusters in three groups (<xref rid="fig3" ref-type="fig">Figure 3</xref>; <xref rid="tab2" ref-type="table">Table 2</xref>). In detail, compared to NC, patients with VMCI showed abnormally increased function&#x2013;structure coupling in Cerebellum-VIII-R (CR-VIII), but there was no difference between VMCI and MCI. In addition, we found an abnormally increased ALFF/VBM ratio in ParaHippocampal-R (PHG.R) and hippocampus (HP.L) in patients with MCI and VMCI compared to NC, also in the comparison of MCI and VMCI (<xref rid="fig1" ref-type="fig">Figure 1A</xref>). The WM results also showed that the averaged ALFF/VBM ratio values in the fusiform gyrus (FG-WM) and cuneus (CUN-WM) were abnormally higher in the patient groups than in the NC (<xref rid="fig1" ref-type="fig">Figure 1B</xref>).</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption>
<p>Abnormal regions of structure&#x2013;function coupling (ALFF/VBM ratio) indicators. <bold>(A)</bold> and <bold>(B)</bold> represent the abnormal regions of structure&#x2013;function coupling within the GM and WM, respectively. The left side shows the abnormal brain regions and the right side shows the histogram with <italic>post-hoc</italic> analysis results. (GRF correction, voxel-level: <italic>p</italic>&#x2009;&#x003C;&#x2009;0.001, cluster level: <italic>p</italic>&#x2009;&#x003C;&#x2009;0.01).</p>
</caption>
<graphic xlink:href="fnins-17-1236221-g003.tif"/>
</fig>
</sec>
<sec id="sec16">
<title>Associations between altered brain regions and clinical characteristics</title>
<p>Pearson&#x2019;s correlation analysis was performed to estimate the relationships between abnormal clusters and MMSE scores in MCI and VMCI (<xref rid="fig4" ref-type="fig">Figure 4</xref>). We found negative correlations between the averaged ALFF values distributed in the CR-VIII and PUT-WM and MMSE scores in the VMCI group (CR-VIII: <italic>p</italic>&#x2009;=&#x2009;0.0419, <italic>r</italic>&#x2009;=&#x2009;&#x2212;0.2149; PUT-WM: <italic>p</italic>&#x2009;=&#x2009;0.0307, <italic>r</italic>&#x2009;=&#x2009;&#x2212;0.2279). In addition, we also observed negative correlations between the averaged coupling values in PHG.R and MMSE scores in the VMCI group (<italic>p</italic>&#x2009;=&#x2009;0.0239, <italic>r</italic>&#x2009;=&#x2009;&#x2212;0.238), and between the averaged coupling values in CUN-WM and MMSE scores in the MCI group (<italic>p</italic>&#x2009;=&#x2009;0.0436, <italic>p</italic>&#x2009;=&#x2009;&#x2212;0.2783).</p>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption>
<p>Relationships between averaged abnormal clusters and MMSE scores. <bold>(A)</bold> shows the correlations between abnormal ALFF values and MMSE scores. <bold>(B)</bold> shows the correlations between abnormal coupling values and MMSE scores. X-axis = MMSE; Y-axis = ALFF or ALFF/VBM ratio.</p>
</caption>
<graphic xlink:href="fnins-17-1236221-g004.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussions" id="sec17">
<title>Discussion</title>
<p>In this study, we investigated the abnormal neuroimaging changes in the early stages of AD by combining whole-brain ALFF and VBM. We adopted novel measures (ALFF/VBM ratio) to investigate the whole-brain structure&#x2013;function coupling abnormalities. For the MCI and VMCI groups, significant differences in ALFF were observed in VM-VIII, PUT.R, CR-VIII in the GM, and ORBinf-WM, PUT-WM, and PCL-WM. Additionally, we found the structure&#x2013;function coupling clusters distributed in CR-VIII, PHG.R, and HP.L in the GM, and CUN.R and the frontal lobe in the WM. More importantly, as the typical focal areas in AD, PHG.R exhibited a negative correlation with the severity of cognitive impairment, indicating the important applications of the ALFF/VBM ratio in brain disorders. Findings from WM functional signals provided a novel perspective for understanding AD pathophysiology.</p>
<p>Using ALFF values from resting-state fMRI signals, we estimated the VMCI- and MCI-related changes in intrinsic and spontaneous brain activity. We found that there were widespread differences in ALFF values among the VMCI, MCI, and healthy elderly patients in the different brain regions of the frontal, temporal, and parietal lobes and in subcortical areas. A previous study showed decreased ALFF in the left hippocampus and PCC (<xref ref-type="bibr" rid="ref65">Sorg et al., 2007</xref>; <xref ref-type="bibr" rid="ref78">Wang et al., 2011</xref>). Different ALFF values in the GM were observed in the PUT.R, and VM-VII among the NC, VMCI, and MCI groups. Also, there was a significant abnormality in the PUT.R. The abnormal ALFF values in the PUT.R were significantly attributed to the memory decline over time and more severe AD pathology. Previous studies have shown that the PUT, as part of the striatum, is active during working memory tasks (<xref ref-type="bibr" rid="ref18">Dahlin et al., 2008</xref>) and probabilistic learning tasks (<xref ref-type="bibr" rid="ref7">Bellebaum et al., 2008</xref>). Cross-sectional studies have reported disrupted functional connectivity involving the PUT in individuals with MCI compared to their healthy counterparts (<xref ref-type="bibr" rid="ref67">Teipel et al., 2007</xref>; <xref ref-type="bibr" rid="ref4">Bai et al., 2011</xref>; <xref ref-type="bibr" rid="ref37">Han et al., 2011</xref>). Our findings of ALFF changes in PUT, in line with two previous studies, likely strengthen the evidence for memory decline over time and more severe AD pathology. In the first study, it was reported that atrophy of the PUT but not the caudate was significantly associated with cognitive decline in patients with probable AD (<xref ref-type="bibr" rid="ref19">de Jong et al., 2008</xref>). In the second study, the other reported abnormally high perfusion in the PUT but not the caudate in MCI compared to AD patients (<xref ref-type="bibr" rid="ref3">Alexopoulos et al., 2012</xref>). Thus, our finding of abnormal ALFF in the PUT, together with our recognition, suggests that the PUT is an important brain region that deserves our attention. In addition, our study also found that ALFF in cerebellar VM-VII is abnormal in three groups. Such an approach was published in the 1990s, when research demonstrated that patients with cerebellar damage had cognitive deficits (<xref ref-type="bibr" rid="ref64">Schmahmann, 1991</xref>). More recently, much evidence has shown that the cerebellum affects not only visuospatial and verbal functions and declarative memory but also more complex behavioral regulatory processes, namely executive function (<xref ref-type="bibr" rid="ref52">Mak et al., 2016</xref>; <xref ref-type="bibr" rid="ref56">Myers et al., 2017</xref>; <xref ref-type="bibr" rid="ref8">Beuriat et al., 2020</xref>; <xref ref-type="bibr" rid="ref49">Liu et al., 2021</xref>). A previous study demonstrated that patients with cognitive impairment had reduced fractional ALFF values in the cerebellar regions closely related to cognitive function compared to HC (<xref ref-type="bibr" rid="ref28">Fan et al., 2019</xref>). The present study found that the widely distributed cerebellar ALFF changed with the severity of cognitive impairment, suggesting the important role of the cerebellum in normal cognitive functional activity. We also found abnormalities in CR-VIII. L, CR-VII. R in the GM between NC and the other two disease groups. According to previous studies, the cerebellum is involved in motor, balance, and cognitive functions (<xref ref-type="bibr" rid="ref71">Wagner and Luo, 2020</xref>), so we think that cerebellar abnormalities are linked to the dysfunction in MCI and VMCI.</p>
<p>As for the WM results, three clusters (ORBinf-WM, PUT-WM, and PCL-WM) were consistently significantly abnormal across the three groups. We analyzed significant differences in ALFF values. ORBinf-WM is a part of the orbitofrontal cortex (OFC) and prefrontal cortex regions in the frontal lobe. It shares extensive connections with other cortices such as motor, primary sensory, and association cortices, the hippocampus, the amygdala, and other areas such as olfactory, auditory, and periaqueductal grey areas. The extensive connections of ORBinf-WM indicate that ORBinf-WM has extensive and complex functions (<xref ref-type="bibr" rid="ref12">Cavada et al., 2000</xref>; <xref ref-type="bibr" rid="ref45">Kringelbach, 2005</xref>; <xref ref-type="bibr" rid="ref6">Barbas, 2007</xref>). Therefore, the abnormal differences in ALFF in ORBinf-WM of our MCI and VMCI patients imply that they might lead to a series of clinical manifestations such as poorer cognitive, behavioral, mental, and mood performance. Especially in the MCI, it will manifest in hallucinations, psychosis, depression, anxiety, apathy, sleep problems, and sexual desire dysfunction. The PCL-WM in the WM regions is distributed in the anterior portion of the paracentral lobule involved in the frontal lobe, which is often referred to as the supplementary motor area. The posterior portion is considered part of the parietal lobe and deals with the somatosensory system of the distal limbs<xref rid="fn0006" ref-type="fn"><sup>6</sup></xref>, demonstrating a potential relationship between associative memory and cognitive disorders. It can be inferred that as the disease develops, neural damage strengthens these three brain regions in the WM. VBM is a reliable method to compare typical brain regions in GM and WM between different groups of patients. Results among the three groups showed more GM atrophy in parts of the parietal and temporal lobes, PUT, insula, parahippocampal gyrus, and frontal lobe of both hemispheres. The above results are consistent with the research of Michaela Defrancesco et al. who reported disrupted WM integrity in the frontal, temporal, and parietal lobes and in subcortical structures in patients with MCI. In addition, AD subjects showed reduced GM density in the frontal lobe, left parietal lobe, left putamen, left insula, left temporal lobe, and right parahippocampal gyrus in comparison to MCI patients (<xref ref-type="bibr" rid="ref21">Defrancesco et al., 2014</xref>). MCI compared to VMCI, showed mild GM atrophy in areas such as the middle temporal lobe and medial frontal lobe, both of which are mainly involved in verbal memory and naming. In addition, atrophy of these brain regions and limbic system structures has been reported in MCI patients years before conversion to AD in numerous previous volumetric MRI studies (<xref ref-type="bibr" rid="ref29">Ferreira et al., 2011</xref>). Regions of the default mode network (DMN), hippocampus, insula, and middle temporal gyrus showed significant GM loss in MCI, suggesting structural impairment in patients with MCI (<xref ref-type="bibr" rid="ref68">Tisserand et al., 2004</xref>). In WM, our results are consistent with several previous findings showing disruption of WM integrity in frontal, temporal, parietal, and subcortical structures in patients with MCI and VMCI (<xref ref-type="bibr" rid="ref75">Wang et al., 2006</xref>; <xref ref-type="bibr" rid="ref50">Liu et al., 2013</xref>; <xref ref-type="bibr" rid="ref5">Bao et al., 2022</xref>). These outcomes suggest that prefrontal and temporal cortical regions are of particular relevance in cognitive decline in healthy elderly individuals (<xref ref-type="bibr" rid="ref21">Defrancesco et al., 2014</xref>).</p>
<p>As a major AD symptom seen in clinics (<xref ref-type="bibr" rid="ref42">Jaroudi et al., 2017</xref>), the PHG and PH regions exhibited abnormally increased structure&#x2013;function coupling values in the VMCI and MCI groups (<xref rid="fig3" ref-type="fig">Figure 3</xref>). The role of the parahippocampal gyrus in AD has long been known, and our research discovered an abnormal ALFF/VBM ratio in the PHG.R and HP.L between MCI and VMCI patients, indicating that the coupling technique may have some validity (<xref ref-type="bibr" rid="ref69">Van Hoesen et al., 2000</xref>). The medial temporal lobe, which is primarily made up of the hippocampus, perirhinal and entorhinal cortices, and parahippocampal cortex involved in episodic memory, is where the early neuropathological changes that are characteristic of AD (<xref ref-type="bibr" rid="ref20">de Leon et al., 1997</xref>; <xref ref-type="bibr" rid="ref23">Dickerson and Eichenbaum, 2010</xref>; <xref ref-type="bibr" rid="ref27">Eichenbaum et al., 2012</xref>). The PHG, which includes the middle temporal gyrus (MTG), angular gyrus, posterior cingulate cortex/precuneus/cuneus (Pcc/Pcu/Cun), and medial frontal cortex, is the area of the brain most commonly impacted by AD (MPFC; <xref ref-type="bibr" rid="ref34">Greicius et al., 2004</xref>; <xref ref-type="bibr" rid="ref11">Buckner et al., 2008</xref>). Additionally, there was a strong correlation between the structure&#x2013;function coupling values of the PHG.R cluster and HP.L and our clinical heterogeneity in the MMSE results. It has been proposed that the DMN participates in activities that are inwardly directed, such as retrieving autobiographical memories and planning for the future (<xref ref-type="bibr" rid="ref16">Chen et al., 2015</xref>). The PHG mainly receives direct associative input from the posterior associative brain areas, which are a component of the DMN. It then strongly projects to the hippocampus, a hub region in the episodic memory network that is located in the caudal two-thirds of the entorhinal cortex (<xref ref-type="bibr" rid="ref46">Lavenex and Amaral, 2000</xref>; <xref ref-type="bibr" rid="ref80">Witter et al., 2000</xref>; <xref ref-type="bibr" rid="ref66">Spaniol et al., 2009</xref>; <xref ref-type="bibr" rid="ref15">Chen et al., 2014</xref>). Understanding the functions of the PHG and the brain regions involved in the DMN in impaired episodic memory in AD/MCI is strengthened by knowledge of disease severity-related changes in connectivity between them. CUN-WM and FG-WM were both found to have distinct abnormal brain regions compared to NC and the other two cases. This was also seen in the ALFF and VBM findings of our study, adding to the mounting evidence that this area of the brain is abnormal in the early stages of AD.</p>
</sec>
<sec id="sec18">
<title>Limitations</title>
<p>Our study has four limitations that need to be considered. First, we did not include the subjects&#x2019; vascular risk factors (such as hypertension, hyperlipidemia, diabetes, obesity, excessive smoking, and mental stress) in the covariates of the regression analysis. The vascular risk factors may influence cognitive function in the elderly, which may be related to AD (<xref ref-type="bibr" rid="ref17">Chong et al., 2017</xref>). Second, we have only analyzed rs-fMRI data. In future studies, the combination of multimodal neuroimaging and biological information may provide a more comprehensive understanding of the progression patterns in AD. Third, our study lacked extensive neuropsychological testing, and more exhaustive neuropsychological testing will be necessary to examine more cognitive aspects of patients to further explore the underlying mechanisms in the brain. Finally, we found that the clinical correlation coefficients between abnormal clusters and the MMSE in <xref rid="fig4" ref-type="fig">Figure 4</xref> did not pass the correction for multiple comparisons. Further studies are needed to replicate the correlation plot results.</p>
</sec>
<sec sec-type="conclusions" id="sec19">
<title>Conclusion</title>
<p>This study investigated the changes in whole-brain neuroimaging in the early stages of AD by combining ALFF and VBM measures and further adopted the novel coupling index (ALFF/VBM ratio) to investigate the whole-brain structure&#x2013;function coupling abnormalities. Compared to NC, MCI, and VMCI groups, significant ALFF differences were distributed in the VM-VIII, PUT.R, and CR-VIII in the GM, ORBinf-WM, PUT-WM, and PCL-WM. Moreover, we observed the coupling differences distributed in the CR-VIII, PHG.R, and HP.L in the GM, and CUN.R and frontal lobe in the WM, which were closely associated with MMSE. The above findings demonstrated the important applications of the ALFF/VBM ratio in brain disorders and provided a novel opinion for understanding the pathophysiology of AD from the perspective of WM functional signals.</p>
</sec>
<sec sec-type="data-availability" id="sec20">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/Supplementary material, further inquiries can be directed to the corresponding authors.</p>
</sec>
<sec id="sec21">
<title>Ethics statement</title>
<p>The studies involving human participants were reviewed and approved by University of Washington Knight AD Research Center and School of Life Science and Technology, University of Electronic Science and Technology of China. The patients/participants provided their written informed consent to participate in this study. Written informed consent was obtained from the individual(s) for the publication of any potentially identifiable images or data included in this article.</p>
</sec>
<sec id="sec22">
<title>Author contributions</title>
<p>RZ performed all data analysis and wrote the whole manuscript. RZ, PW, and BB contributed to the study design and sorting of the experimental data, modifying the manuscript. LL, FZ, PH, JW, and HL contributed to the analysis and interpretation of data. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec sec-type="funding-information" id="sec23">
<title>Funding</title>
<p>This work was supported by the China MOST2030 Brain Project No. 2022ZD0208500 and the National Natural Science Foundation of China (grant numbers: 61871420; 62171101). The funding sources had no role in the design, methods, subject recruitment, data collection, analysis, or preparation of the paper.</p>
</sec>
<sec sec-type="COI-statement" id="sec24">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec34">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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