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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Neurosci.</journal-id>
<journal-title>Frontiers in Neuroscience</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Neurosci.</abbrev-journal-title>
<issn pub-type="epub">1662-453X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fnins.2023.1223777</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Neuroscience</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>CRISPR/Cas9: implication for modeling and therapy of amyotrophic lateral sclerosis</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Shi</surname>
<given-names>Yajun</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="fn0003" ref-type="author-notes"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1583210/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhao</surname>
<given-names>Yan</given-names>
</name>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="fn0003" ref-type="author-notes"><sup>&#x2020;</sup></xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Lu</surname>
<given-names>Likui</given-names>
</name>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1577710/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gao</surname>
<given-names>Qinqin</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Yu</surname>
<given-names>Dongyi</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="c001" ref-type="corresp"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2060151/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Sun</surname>
<given-names>Miao</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="c002" ref-type="corresp"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1244828/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Key Laboratory of Birth Defect Prevention and Genetic Medicine of Shandong Health Commission, Key Laboratory of Birth Regulation and Control Technology of National Health Commission of China, Center for Medical Genetics and Prenatal Diagnosis, Shandong Provincial Maternal and Child Health Care Hospital Affiliated to Qingdao University</institution>, <addr-line>Jinan, Shandong</addr-line>, <country>China</country></aff>
<aff id="aff2"><sup>2</sup><institution>Institute for Fetology, the First Affiliated Hospital of Soochow University</institution>, <addr-line>Suzhou, Jiangsu</addr-line>, <country>China</country></aff>
<author-notes>
<fn id="fn0001" fn-type="edited-by"><p>Edited by: Sen Yan, Jinan University, China</p></fn>
<fn id="fn0002" fn-type="edited-by"><p>Reviewed by: Fang Hua, Augusta University, United States; Girish Kumar Srivastava, University of Valladolid, Spain</p></fn>
<corresp id="c001">&#x002A;Correspondence: Dongyi Yu, <email>dongyi_yu@163.com</email></corresp>
<corresp id="c002">Miao Sun, <email>miaosun33@suda.edu.cn</email></corresp>
<fn id="fn0003" fn-type="equal"><p><sup>&#x2020;</sup>These authors have contributed equally to this work</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>06</day>
<month>07</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>17</volume>
<elocation-id>1223777</elocation-id>
<history>
<date date-type="received">
<day>16</day>
<month>05</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>21</day>
<month>06</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2023 Shi, Zhao, Lu, Gao, Yu and Sun.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Shi, Zhao, Lu, Gao, Yu and Sun</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Amyotrophic lateral sclerosis (ALS) is a deadly neurological disease with a complicated and variable pathophysiology yet to be fully understood. There is currently no effective treatment available to either slow or terminate it. However, recent advances in ALS genomics have linked genes to phenotypes, encouraging the creation of novel therapeutic approaches and giving researchers more tools to create efficient animal models. Genetically engineered rodent models replicating ALS disease pathology have a high predictive value for translational research. This review addresses the history of the evolution of gene editing tools, the most recent ALS disease models, and the application of CRISPR/Cas9 against ALS disease.</p>
</abstract>
<kwd-group>
<kwd>amyotrophic lateral sclerosis</kwd>
<kwd>gene editing</kwd>
<kwd>CRISPR/Cas9</kwd>
<kwd>ALS models</kwd>
<kwd>gene therapeutic</kwd>
<kwd>clinical trials</kwd>
</kwd-group>
<contract-num rid="cn1">2022YFC2703700</contract-num>
<contract-num rid="cn1">2019YFA0802600</contract-num>
<contract-num rid="cn2">81974244</contract-num>
<contract-num rid="cn2">81570960</contract-num>
<contract-sponsor id="cn1">National Key R&#x0026;D Program of China</contract-sponsor>
<contract-sponsor id="cn2">National Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content></contract-sponsor>
<counts>
<fig-count count="1"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="110"/>
<page-count count="12"/>
<word-count count="9342"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Neurodegeneration</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="sec1">
<title>Introduction</title>
<p>Amyotrophic lateral sclerosis (ALS), also known as Lou Gehrig&#x2019;s disease, is a progressive neurodegenerative disease that destroys motor neurons (MNs) in the spinal cord, brainstem, and motor cortex. ALS within 2&#x2013;5&#x2009;years of the onset of symptoms, leading to muscle weakening, atrophy, paralysis, respiratory failure, and death (<xref ref-type="bibr" rid="ref65">Marcus, 2022</xref>). Additionally, ALS is one of the most common adult motor neuron diseases, affecting 2&#x2013;3 persons out of every 100,000 individuals globally (<xref ref-type="bibr" rid="ref74">Oskarsson et al., 2018</xref>; <xref ref-type="bibr" rid="ref25">Feldman et al., 2022</xref>). Evidence shows that the prevalence of ALS has been rising in recent years, which may be largely attributed to the advancements in clinical services that allow precise diagnosis (<xref ref-type="bibr" rid="ref60">Logroscino et al., 2018</xref>). However, ALS is still incurable. Current medications, such as Riluzole, prolong patient survival by an average of 3 months but are only modestly beneficial, highlighting the need for solutions to treat this dangerous condition.</p>
<p>Most cases of ALS are sporadic and have an unknown etiology, whereas approximately 10&#x2009;~&#x2009;15% of patients have a family history of the disease, strongly indicating a genetic predisposition (<xref ref-type="bibr" rid="ref82">Sahdeo and Goldstein, 2021</xref>). The genetic etiology of ALS has been linked to more than 50 genes that include causal or disease-modifying variations (<xref ref-type="bibr" rid="ref91">Taylor et al., 2016</xref>; <xref ref-type="bibr" rid="ref29">Giovannelli et al., 2023</xref>). The most commonly investigated ALS genes, including superoxide dismutase (<italic>SOD1</italic>), chromosome 9 open reading frame 72 (<italic>C9orf72</italic>), TAR DNA-binding protein 43 (<italic>TDP43</italic>), and RNA binding protein fused in sarcoma (<italic>FUS</italic>), account for roughly 75% of familial ALS cases (<xref ref-type="bibr" rid="ref75">Owens, 2017</xref>; <xref ref-type="bibr" rid="ref24">Fang et al., 2022</xref>). Our understanding of the pathophysiology of ALS has significantly increased due to the analysis of the molecular pathways underlying these mutant ALS genes, revealing new information about prospective therapeutic targets. Accordingly, developing models of ALS and targeting the mutant genes (i.e., gene therapy) has been investigated worldwide to translate these gene therapies into the clinical setting.</p>
<p>With a corrected pathogenetic mutation, gene editing offers a potential treatment for ALS, and it is now beginning to be used in clinical settings (<xref ref-type="bibr" rid="ref71">Mullard, 2019</xref>). In particular, the genome-editing technology known as clustered regularly interspaced short palindromic repeats/CRISPR-associated system 9 (CRISPR/Cas9) has gained attention for its possible benefits in the management and treatment of ALS (<xref ref-type="bibr" rid="ref16">Cho et al., 2013</xref>; <xref ref-type="bibr" rid="ref100">Yamashita et al., 2013</xref>). Compared to other genome editing techniques like transcription activator-like effector nucleases (TALENs) and zinc finger nucleases (ZFNs), CRISPR/Cas9 is easy to use and reasonably priced (<xref ref-type="bibr" rid="ref101">Yang et al., 2017</xref>; <xref ref-type="bibr" rid="ref6">Bhardwaj et al., 2022</xref>; <xref ref-type="bibr" rid="ref67">Meijboom et al., 2022</xref>). In this review, we emphasize the history of the emergence of gene editing tools and highlight the developments in CRISPR/Cas9 mediated gene correction and disease models gene therapy for ALS disease.</p>
</sec>
<sec id="sec2">
<title>The evolution and history of gene editing</title>
<p>Gene editing constantly evolves to provide more precise, diverse, and large-scale implementations, allowing us to gain innovative insights into the biological field. Previously, homologous recombination (HR) and non-homologous end-joining (NHEJ) were used to carry out genetic engineering. Due to its low efficacy in many cell types and animals, we still need another alternative. Currently, there exist three main gene editing technologies: ZNFs, TALENs, and the CRISPR/Cas system, among which CRISPR/Cas system is now the most predominant technology.</p>
<sec id="sec3">
<title>Zinc finger nucleases</title>
<p><italic>Flavobacterium okeanokoites</italic> (<italic>FokI</italic>) and zinc finger structure, which promoted further development of gene editing, were discovered in the 1990s (<xref ref-type="bibr" rid="ref53">Li et al., 1992</xref>). Zinc finger proteins region with conserved sequences are arranged in a certain order, containing three to six Cys2-His2 fingers, followed by attachment of <italic>FokI</italic> to the end of the protein. Zinc fingers are transcription factors, where each finger recognizes 3&#x2013;4 bases. Ultimately, ZFNs recognized a 9&#x2013;18&#x2009;bp sequence (<xref ref-type="bibr" rid="ref58">Liu et al., 1997</xref>). After ZFNs bind to DNA in DNA-binding domains, the <italic>FokI</italic> nuclease induces cleavage as a dimer, resulting in double-stranded breaks (DSB) in the target loci. Then, HR and NHEJ are activated to complete gene editing through the intracellular DNA repair mechanism (<xref ref-type="bibr" rid="ref73">Nakashima et al., 2022</xref>). Theoretically, ZFNs recognize almost all 64 possible nucleotide triplets, but the specificity and affinity of ZNFs are still issues. Additionally, ZFNs are reported to exert a significant cytotoxic effect because of the off-target cleavages (<xref ref-type="bibr" rid="ref31">Gupta et al., 2013</xref>).</p>
</sec>
<sec id="sec4">
<title>Transcription activator-like effector nucleases</title>
<p>Like ZFNs, TALENs are artificial chimeric proteins engineered by fusing a non-specific <italic>FokI</italic> endonucleases domain to a DNA-binding domain recognizing an arbitrary base sequence (<xref ref-type="bibr" rid="ref105">Zhang et al., 2019</xref>). The TALENs are well known for their unique DNA-binding domain in their central region, conserved tandem between 7 and 34 homologously repeated amino acid residues. Two residues located at positions 12 and 13, called repeat variable di-residues (RVD), are highly variable residues responsible for recognizing a specific nucleotide (<xref ref-type="bibr" rid="ref2">Agarwal and Gupta, 2021</xref>).</p>
<p>Unlike ZFNs, TALENs had the advantage that they could bind to just one nucleotide inside its DNA-binding domains rather than three, resulting in enhanced specificity and decreasing in the off-target events (<xref rid="tab1" ref-type="table">Table 1</xref>). TALENs, cheaper, safer, more efficient, and easier to engineer than zinc-finger proteins, can be applied more widely to life sciences than ZFNs (<xref ref-type="bibr" rid="ref34">Huo et al., 2019</xref>). This gene-editing tool was utilized for various cell lines, including induced pluripotent stem cells (iPSCs) (<xref ref-type="bibr" rid="ref49">Kwon et al., 2021</xref>; <xref ref-type="bibr" rid="ref80">Qiu et al., 2021</xref>; <xref ref-type="bibr" rid="ref87">Siles et al., 2023</xref>), nematodes (<xref ref-type="bibr" rid="ref94">Verdu et al., 2020</xref>, <xref ref-type="bibr" rid="ref93">2021</xref>), zebrafish (<xref ref-type="bibr" rid="ref108">Zhu et al., 2021</xref>; <xref ref-type="bibr" rid="ref85">Sertori et al., 2022</xref>), and generating knockouts in rodent models (<xref ref-type="bibr" rid="ref52">Lee et al., 2021</xref>). Despite the improvement, simplification, and high specificity of TALENs, they have an obvious limitation: being quite large (impeding delivery). This limitation makes it difficult to deliver and express a pair of TALENs into the cells of interest because they cannot be packaged in vectors of their limited cargo capacity, such as adeno-associated viruses (AAVs), or delivered as RNA molecules (<xref ref-type="bibr" rid="ref44">Khan, 2019</xref>; <xref ref-type="bibr" rid="ref38">Jo et al., 2022</xref>).</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption><p>Comparison of the three currently used gene editing platforms: ZFN, TALEN, and CRISPR/Cas9.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th/>
<th align="left" valign="top">ZFN</th>
<th align="left" valign="top">TALEN</th>
<th align="left" valign="top">CRISPR/Cas9</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Structure</td>
<td align="left" valign="top">Dimer</td>
<td align="left" valign="top">Dimer</td>
<td align="left" valign="top">Monomer</td>
</tr>
<tr>
<td align="left" valign="top">Modification pattern</td>
<td align="left" valign="top">Fok1 nuclease</td>
<td align="left" valign="top">Fok1 nuclease</td>
<td align="left" valign="top">Cas 9 nuclease</td>
</tr>
<tr>
<td align="left" valign="top">DNA binding molecule</td>
<td align="left" valign="top">Zinc finger protein</td>
<td align="left" valign="top">Transcription activator-like effectors</td>
<td align="left" valign="top">sgRNA or crRNA</td>
</tr>
<tr>
<td align="left" valign="top">Target sequence size</td>
<td align="left" valign="top">Typically 9&#x2013;18&#x2009;bp per ZFN monomer, 18&#x2013;36&#x2009;bp per ZFN pair</td>
<td align="left" valign="top">Typically 14&#x2013;20&#x2009;bp per TALEN monomer, 28&#x2013;40&#x2009;bp per ZFN pair</td>
<td align="left" valign="top">22&#x2009;bp: Typically 20&#x2009;bp guide sequence +2&#x2009;bp PAM sequence</td>
</tr>
<tr>
<td align="left" valign="top">Targeting limitations</td>
<td align="left" valign="top">Difficult to target non-G-rich site</td>
<td align="left" valign="top">5&#x2032; targeted base must be a T for each TALEN monomer</td>
<td align="left" valign="top">The targeted site must precede a PAM sequence</td>
</tr>
<tr>
<td align="left" valign="top">Specificity</td>
<td align="left" valign="top">Tolerating a small number of positional mismatches</td>
<td align="left" valign="top">Tolerating a small number of positional mismatches</td>
<td align="left" valign="top">Tolerating multiple consecutive/positional mismatches</td>
</tr>
<tr>
<td align="left" valign="top">DNA recognition mechanism</td>
<td align="left" valign="top">Protein-DNA interactions that introduce DSB</td>
<td align="left" valign="top">Protein-DNA interactions that introduce DSB</td>
<td align="left" valign="top">RNA-guided protein-DNA interactions that introduce DSB</td>
</tr>
<tr>
<td align="left" valign="top">Multiplex genome editing</td>
<td align="left" valign="top">Not easy (few models)</td>
<td align="left" valign="top">Not easy (few models)</td>
<td align="left" valign="top">Easy (high-yield multiplexing available)</td>
</tr>
<tr>
<td align="left" valign="top">Delivery vehicle</td>
<td align="left" valign="top">Easy via electroporation and viral vectors transduction</td>
<td align="left" valign="top">Easy <italic>in vitro</italic> delivery; difficult <italic>in vivo</italic> due to the large size of TALEN DNA and their high probability of recombination</td>
<td align="left" valign="top">Easy <italic>in vitro</italic>; the moderate difficulty of delivery <italic>in vivo</italic> due to poor packaging of the large Cas9 by viral vectors</td>
</tr>
<tr>
<td align="left" valign="top">Off-target effects</td>
<td align="left" valign="top">Highly possible off-target activities</td>
<td align="left" valign="top">Low possible off-target activities</td>
<td align="left" valign="top">Variable; limited off-target activities</td>
</tr>
<tr>
<td align="left" valign="top">Cytotoxicity</td>
<td align="left" valign="top">Variable to high</td>
<td align="left" valign="top">Low</td>
<td align="left" valign="top">Low</td>
</tr>
<tr>
<td align="left" valign="top">Cost</td>
<td align="left" valign="top">Low</td>
<td align="left" valign="top">High</td>
<td align="left" valign="top">Low</td>
</tr>
<tr>
<td align="left" valign="top">Popularity</td>
<td align="left" valign="top">Low</td>
<td align="left" valign="top">Moderate</td>
<td align="left" valign="top">High</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="sec5">
<title>CRISPR/Cas system</title>
<p>The CRISPR/Cas system, whose gene editing ability was confirmed in human cells in 2013 (<xref ref-type="bibr" rid="ref16">Cho et al., 2013</xref>), is the most recent platform in genome editing. Unlike nucleases that recognize the target sequence through protein-DNA interaction, CRISPR-Cas systems target sequences through RNA and DNA base pairing (<xref ref-type="bibr" rid="ref105">Zhang et al., 2019</xref>) (<xref rid="tab1" ref-type="table">Table 1</xref>). Naturally occurring CRISPR-Cas systems can be categorized into two classes based on the <italic>Cas</italic> genes&#x2019; structural variations and their organization styles (<xref ref-type="bibr" rid="ref64">Makarova et al., 2015</xref>). The type II CRISPR/Cas9 system, which depends on a single Cas protein from <italic>streptococcus pyogenes</italic> (SpCas9) targeting particular DNA sequences and has been adopted for gene editing applications, is the most frequently used subtype of CRISPR systems (<xref ref-type="bibr" rid="ref37">Jiang et al., 2013</xref>). Mechanistically, CRISPR/Cas9 systems have two components: single-guide RNA (sgRNA) and Cas9 endonuclease. Usually, the sgRNA was designed near the adjacent protospacer motif (PAM) and bound to the target DNA sequence by Watson&#x2013;Crick base pairing. Then Cas9 precisely cleaves the DNA to generate a DSB (<xref ref-type="bibr" rid="ref33">Hu et al., 2018</xref>). These DSBs are commonly repaired by NHEJ or HDR, resulting in gene disruption and inactivation of the targeted gene (<xref ref-type="bibr" rid="ref51">Lee et al., 2016</xref>) (<xref rid="fig1" ref-type="fig">Figure 1</xref>). The sgRNA and Cas protein-coding gene are usually delivered via transfection and packaging into AAVs or lentivirus (<xref ref-type="bibr" rid="ref43">Kenjo et al., 2021</xref>; <xref ref-type="bibr" rid="ref57">Ling et al., 2021</xref>; <xref ref-type="bibr" rid="ref72">Nahmad et al., 2022</xref>).</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption><p>Comparison of traditional and CRISPR/Cas9-based disease modeling.</p></caption>
<graphic xlink:href="fnins-17-1223777-g001.tif"/>
</fig>
<p>Although there are still several issues that remain to be resolved in CRISPR/Cas9 system, including well-known off-target effects, cytotoxicity with DNA damage, chromosomal rearrangement and frequent p53 activation (<xref ref-type="bibr" rid="ref32">Hendriks et al., 2020</xref>; <xref ref-type="bibr" rid="ref9">Bravo et al., 2022</xref>). However, compared to other genome editing technologies, CRISPR/Cas9 system is easier, more scalable, and more efficient (<xref ref-type="bibr" rid="ref55">Li et al., 2020</xref>). Therefore, it is frequently used to create animal models or to treat serious, incurable human diseases (<xref ref-type="bibr" rid="ref54">Li et al., 2021</xref>; <xref ref-type="bibr" rid="ref4">Baskoylu et al., 2022</xref>).</p>
<p>Although promising, this strategy raises potential safety concerns as it relies on repairing the DSBs and NHEJ created by CRISPR/Cas9, which may cause deleterious large deletions, chromosomal rearrangements, or undesirable mutagenic outcomes (<xref ref-type="bibr" rid="ref107">Zhao et al., 2022</xref>). To overcome this limitation and improve the safety and applicability of the CRISPR/Cas9 system, a new paradigm-shifting class of genome editing technology, CRISPR single-base editors, have recently been developed. CRISPR single-base editors may precisely and directly insert point mutations into chromosomal DNA without creating DSBs by combining the Cas9 nickase with nucleobase deaminases (<xref ref-type="bibr" rid="ref13">Caso and Davies, 2022</xref>). To date, two main kinds of base editors have been developed: adenine base editors (ABEs), which catalyze A/T to G/C conversions, and cytosine base editors (CBEs), which catalyze the conversion of G/C base pairs to T/A base pairs (<xref ref-type="bibr" rid="ref3">Anzalone et al., 2020</xref>). However, base editors cannot make multiple base pair insertions and deletions. When many As or Cs are present around the target site, they might inadvertently become mutated and created off-target effects. To overcome this limitation, termed prime editing, which could insert longer stretches of DNA, has been developed recently. Base editors have been applied to various cell types and organisms, including animal models of human genetic diseases (<xref ref-type="bibr" rid="ref42">Kawamata et al., 2023</xref>).</p>
</sec>
</sec>
<sec id="sec6">
<title>Amyotrophic lateral sclerosis model construction</title>
<p>Given that there are no ethical considerations, the experimental time is relatively short, and the expense is minimal, cell models are commonly used to explore many neurological illnesses, including ALS. Furthermore, recent advances in CRISPR/Cas9 technology allow researchers to precisely target and introduce modifications in the genomic DNA of different cell lines (<xref ref-type="bibr" rid="ref46">Kramer et al., 2018</xref>; <xref ref-type="bibr" rid="ref41">Karginov et al., 2023</xref>). The introduction of the CRISPR/Cas9 system has facilitated the development of numerous ALS cell models, such as HT22, iPSCs, BV2, Neuro 2a, NSC-34, hESC, and HeLa cell lines, etc. For example, <xref ref-type="bibr" rid="ref59">Liu et al. (2022)</xref> recently used CRISPR/Cas9 gene-editing technology to create an astrocyte elevated gene-1 (AEG-1) deficient HT22 cell model that can be used to study AEG-1 related ALS. In addition, <xref ref-type="bibr" rid="ref104">Zhang et al. (2022)</xref> used CRISPR/Cas9 to introduce a UBQLN2 P497H mutation into a healthy control iPSC line. Following this, the mutated iPSC line could differentiate into motor neurons, which can help comprehend the pathology of UBQLN2-related ALS (<xref ref-type="bibr" rid="ref104">Zhang et al., 2022</xref>). Importantly, CRISPR-iPSC-based disease modeling could expedite research on ALS (<xref ref-type="bibr" rid="ref84">Sen and Thummer, 2022</xref>) by targeting <italic>SOD1</italic> (<xref ref-type="bibr" rid="ref45">Kim et al., 2020</xref>), <italic>TDP-43</italic> (<xref ref-type="bibr" rid="ref11">Burkhardt et al., 2013</xref>), <italic>FUS</italic> (<xref ref-type="bibr" rid="ref99">Wang et al., 2017</xref>), and <italic>C9ORF72</italic> (<xref ref-type="bibr" rid="ref12">Cali et al., 2019</xref>; <xref ref-type="bibr" rid="ref1">Ababneh et al., 2020</xref>; <xref ref-type="bibr" rid="ref47">Krishnan et al., 2020</xref>) genes, etc. Furthermore, <xref ref-type="bibr" rid="ref88">Strohm et al. (2022)</xref> also made CRISPR/Cas9-engineered HeLa cells with ALS UBQLN2 mutations to determine how UBQLN2 mutations cause ALS. ALS can be caused by OPTN gene mutations, which result in cytoplasmic mislocalization, ubiquitination, and accumulation of nuclear TDP-43. <xref ref-type="bibr" rid="ref79">Prtenjaca et al. (2022)</xref> used CRISPR/Cas9 methodology to create OPTN knockout (KO) cell lines for Neuro 2a and NSC-34 neurons and BV2 microglia to investigate the relationship between optineurin and TDP-43. Their research showed that OPTN mutations might lead to elevated levels of TDP-43 protein in microglia when optineurin is absent (<xref ref-type="bibr" rid="ref79">Prtenjaca et al., 2022</xref>). In addition, <xref ref-type="bibr" rid="ref106">Zhang et al. (2022)</xref> created a heterozygous <italic>FUS</italic>-Q290X knock in the human embryonic stem cell (hESC) line, which will be a valuable tool for investigating the disease mechanisms of ALS using the CRISPR/Cas9 system.</p>
<p>CRISPR/Cas9 technology is not only helpful in creating ALS cell models but also in creating ALS animal models. For instance, ALS can be caused by mutations in valosin-containing protein (VCP). On the other hand, there is no constitutive VCP knockout animal model due to embryonic lethality. <xref ref-type="bibr" rid="ref95">Voisard et al. (2022)</xref> developed a constitutive CRISPR/Cas9-induced VCP knockout zebrafish model. Furthermore, <xref ref-type="bibr" rid="ref97">Wall et al. (2021)</xref> created the Drosophila knockin models using the CRISPR/Cas9 technique to investigate VCP diseases (including multisystem proteinopathy and ALS) (<xref ref-type="bibr" rid="ref97">Wall et al., 2021</xref>). To investigate the pathogenic effects of TP73 mutations in ALS, <xref ref-type="bibr" rid="ref81">Russell et al. (2021)</xref> utilized CRISPR/Cas9 technology targeting TP73 in zebrafish and assessed motor neuron quantity and axonal structure. Their findings revealed that knocking out TP73 in zebrafish using CRISPR/Cas9 resulted in disrupted motor neuron development and abnormal axonal morphology, indicative of ALS pathology (<xref ref-type="bibr" rid="ref81">Russell et al., 2021</xref>). Additionally, <xref ref-type="bibr" rid="ref8">Bose et al. (2019)</xref> developed a TDP-43 loss-of-function model in zebrafish using the CRISPR/Cas9 system. Moreover, to examine mechanisms underlying mutations in <italic>FUS</italic> that lead to neuronal dysfunction in ALS patients, the <italic>C. elegans</italic> knockin models were generated by <xref ref-type="bibr" rid="ref4">Baskoylu et al. (2022)</xref> using CRISPR-Cas9-mediated genome editing. Their findings suggested impaired autophagy might play a role in the neuromuscular defects and protein homeostasis associated with ALS <italic>FUS</italic> knockin animals (<xref ref-type="bibr" rid="ref4">Baskoylu et al., 2022</xref>). As for the FUS gene, <xref ref-type="bibr" rid="ref103">Zhang et al. (2018)</xref> developed a novel knockin rat model expressing a <italic>Fus</italic> point mutation (R521C) via CRISPR/Cas9. They discovered that FUS might regulate sleep, circadian rhythms, and learning and memory behavior (<xref ref-type="bibr" rid="ref103">Zhang et al., 2018</xref>). Degeneration of neurons in many ALS subtypes has been linked to DNA damage and defective repair, but the underlying mechanisms are unclear. The role of <italic>TDP-43</italic> in DNA damage response (DDR) has not been explored, despite growing evidence suggesting the involvement of other RNA/DNA binding proteins like <italic>FUS</italic> in DDR (<xref ref-type="bibr" rid="ref98">Wang et al., 2018</xref>). <xref ref-type="bibr" rid="ref69">Mitra et al. (2019)</xref> demonstrated that the loss of nuclear <italic>TDP-43</italic> is linked to DNA double-strand break repair defects and DDR signaling in ALS by using CRISPR/Cas9-mediated conditional depletion of TDP-43 in <italic>C. elegans</italic>. Also, <xref ref-type="bibr" rid="ref5">Baskoylu et al. (2018)</xref> made ALS knockin models in <italic>C. elegans</italic> by editing the endogenous <italic>Sod-1</italic> gene with CRISPR/Cas9 and discovered that knockin models could replicate the neurotransmitter-type specificity of ALS. Using the CRISPR/Cas9 system, <xref ref-type="bibr" rid="ref40">Kao et al. (2020)</xref> created MATR3 S85C knockin mice that mimic early-stage ALS and would be useful in future basic and preclinical research. Sporadic ALS patients were found to have mutations in the <italic>CREST</italic> gene (also called SS18L1), which acts as a calcium-regulated transcriptional activator. Loss of <italic>CREST</italic> causes neuroinflammatory responses and ALS-like motor defects in mice, as demonstrated by the work of <xref ref-type="bibr" rid="ref15">Cheng et al. (2019)</xref>, who used the CRISPR/Cas9 system to create <italic>CREST</italic> knockout and Q394X knockin mice. In addition, <italic>C9orf72</italic>-deficient mice (<xref ref-type="bibr" rid="ref89">Sullivan et al., 2016</xref>) have been successfully established by using the CRISPR/Cas9 system due to the recent discovery of hexanucleotide repeat expansion in the C9orf72 gene as a major cause of frontotemporal lobar degeneration (FTLD) with ALS (<xref ref-type="bibr" rid="ref20">DeJesus-Hernandez et al., 2011</xref>).</p>
<p>Researching the etiology and developing treatments for human diseases requires animal models. The discovery of specific gene mutations that cause neurodegenerative disorders has led to the development of numerous models in small animals with symptoms similar to those experienced by people with the diseases. Genetically modified rodents are today&#x2019;s most widely used animal models because they apply to explore pathogenesis. However, most genetically modified rodent models do not exhibit overt neurodegeneration, creating difficulties in using them to rigorously test the effects of therapies on neurodegeneration (<xref ref-type="bibr" rid="ref76">Philips and Rothstein, 2015</xref>). Recent research using CRISPR/Cas9-targeted large animals (such as pigs and monkeys) (<xref ref-type="bibr" rid="ref54">Li et al., 2021</xref>; <xref ref-type="bibr" rid="ref102">Yang et al., 2022</xref>) has uncovered important pathological events that resemble neurodegeneration in the patient&#x2019;s brain. Still, these events could not be produced in small animal models. Injections of multiple sgRNAs are more effective than injections of a single type of sgRNA at a high concentration for achieving complete gene knockout. The complete gene knockout by the CRISPR/Cas9 system is conducive to reducing the test times of large animals and ensuring their accuracy, which is strongly supported by ethical considerations (<xref ref-type="bibr" rid="ref109">Zuo et al., 2017</xref>). Although no ALS models in large animals have been developed so far using CRISPR/Cas9 technology, it is essential to create a large animal ALS model using this approach to gain more knowledge about the pathogenesis of ALS.</p>
</sec>
<sec id="sec7">
<title>The application of the CRISPR/Cas9 technology for amyotrophic lateral sclerosis therapy</title>
<p>CRISPR/Cas9 system, used in cells and animal models, is a promising tool for modeling and treating genetic diseases (<xref rid="tab2" ref-type="table">Table 2</xref>). Compared with cellular-level studies, animal models are more favorable for exploring the pathogenic gene and molecular pathways of diseases at the organismal level. For ALS, definite treatments are still lacking. Here, we mainly focus on CRISPR/Cas9 system applications in ALS. The great advantage of this strategy is that correction of the mutant DNA eliminates abnormal downstream pathways and is a one-time intervention theoretically. Currently, limited studies have been accomplished in the ALS field.</p>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption><p>Studies of the applications of CRISPR/Cas9-mediated genome editing in ALS.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Target</th>
<th align="left" valign="top">Point mutation</th>
<th align="left" valign="top">Organism/cell line</th>
<th align="left" valign="top">Delivery</th>
<th align="left" valign="top">Results</th>
<th align="left" valign="top">References</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top" rowspan="8"><italic>SOD1</italic></td>
<td align="left" valign="top">A272C</td>
<td align="left" valign="top">Human ALS patient-derived iPSCs</td>
<td align="left" valign="top">Electroporation</td>
<td align="left" valign="top">Discovered early biomarkers and pathways dysregulated in ALS</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref99">Wang et al., 2017</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">L144FVX</td>
<td align="left" valign="top">Human ALS patient-derived iPSCs</td>
<td align="left" valign="top">Adenoassociated Virus Vector</td>
<td align="left" valign="top">Over half of the iPSCs targeted the Src/c-Abl signaling pathway, suggesting that Src/c-Abl may be a potentially useful target for developing new drugs to treat ALS</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref36">Imamura et al., 2017</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">E100G</td>
<td align="left" valign="top">Human ALS patient-derived iPSCs</td>
<td align="left" valign="top">Nucleofection</td>
<td align="left" valign="top">Identified activated ERK and JNK signaling are critical drivers of neurodegeneration in mutant <italic>SOD1</italic> motor neurons</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref7">Bhinge et al., 2017</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">G93A</td>
<td align="left" valign="top"><italic>SOD1</italic>-G93A transgenic mouse</td>
<td align="left" valign="top">Adenoassociated Virus Vector</td>
<td align="left" valign="top">Disruption of mutant <italic>SOD1</italic> enhances the survival of spinal cord motor neurons and improves motor function and life span</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref26">Gaj et al., 2017</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">G93A</td>
<td align="left" valign="top"><italic>SOD1</italic>-G93A transgenic mouse</td>
<td align="left" valign="top">Use an AAV vector and inject it into the lumbar subarachnoid space</td>
<td align="left" valign="top">Deleting mutant <italic>SOD1</italic> via CRISPR/Cas9 prolongs survival in an ALS mouse model</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref23">Duan et al., 2020</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">G93A</td>
<td align="left" valign="top"><italic>SOD1</italic>-G93A transgenic mouse</td>
<td align="left" valign="top">Intrathecal injection</td>
<td align="left" valign="top">The mouse treated by split-intein CRISPR base editor had a reduced rate of muscle atrophy, improved neuromuscular function, and up to 40% fewer SOD1 immunoreactive inclusions</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref56">Lim et al., 2020</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">G93A</td>
<td align="left" valign="top">Human <italic>SOD1</italic>-G93A missense mutation iPSCs</td>
<td align="left" valign="top">Sendai virus-based vector</td>
<td align="left" valign="top">The mutant motor neurons accumulated misfolded and aggregated forms of <italic>SOD1</italic> in cell bodies, causing axonopathy and aberrant neurotransmission</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref45">Kim et al., 2020</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">G93A</td>
<td align="left" valign="top"><italic>SOD1</italic>-G93A transgenic mouse</td>
<td align="left" valign="top">Intracerebroventricular injection</td>
<td align="left" valign="top">Rescues motor function deficits and extends survival in a <italic>SOD1</italic>-ALS mouse model</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref14">Chen et al., 2022</xref>)</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="5"><italic>C9ORF72</italic></td>
<td align="left" valign="top">Deleted GGGGCC</td>
<td align="left" valign="top">Human ALS patient-derived iPSCs</td>
<td align="left" valign="top">Cloned into px300 plasmid and introduced to the iPSCs by nucleofection</td>
<td align="left" valign="top">Provides a proof-of-principle for using CRISPR-Cas9-mediated excision of the pathogenic <italic>C9orf72</italic> repeat expansion as a therapeutic strategy in ALS</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref61">Lopez-Gonzalez et al., 2016</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Deleted GGGGCC</td>
<td align="left" valign="top">Human ALS patient-derived iPSCs</td>
<td align="left" valign="top">Nucleofection</td>
<td align="left" valign="top">The mutations lead to increased Ca<sup>2+</sup>-permeable and enhance selective MNs&#x2019; vulnerability to excitotoxicity</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref83">Selvaraj et al., 2018</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Deleted GGGGCC</td>
<td align="left" valign="top"><italic>C9ORF72</italic> patient-derived iPSCs</td>
<td align="left" valign="top">Sendai virus-based vector</td>
<td align="left" valign="top">Performed an extensive phenotypic characterization of ALS-iPSCs-derived MNs</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref18">Dafinca et al., 2016</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Deleted GGGGCC</td>
<td align="left" valign="top"><italic>C9ORF72</italic> patient-derived iPSCs</td>
<td align="left" valign="top">Nucleofection</td>
<td align="left" valign="top">Proved partial inhibition of an overactivated DNA repair pathway suppresses a cell death pathway is the pathology of ALS</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref62">Lopez-Gonzalez et al., 2019</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Deleted GGGGCC</td>
<td align="left" valign="top"><italic>C9ORF72</italic> patient-derived iPSCs</td>
<td align="left" valign="top">Adenoassociated Virus Vector 9</td>
<td align="left" valign="top">The CRISPR/Cas9-mediated genome correction reduced RNA foci, poly-dipeptides, and haploinsufficiency, major hallmarks of ALS</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref67">Meijboom et al., 2022</xref>)</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="6"><italic>FUS</italic></td>
<td align="left" valign="top">R521H</td>
<td align="left" valign="top"><italic>FUS</italic> patient-derived iPSCs</td>
<td align="left" valign="top">Nucleofection</td>
<td align="left" valign="top">Mutations in <italic>FUS</italic> result in apparent defects in MNs derived from <italic>FUS</italic>-ALS patients</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref30">Guo et al., 2017</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">G1566A</td>
<td align="left" valign="top"><italic>FUS</italic> patient-derived iPSCs</td>
<td align="left" valign="top">Electroporation</td>
<td align="left" valign="top">Discovered early biomarkers and pathways dysregulated in ALS</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref99">Wang et al., 2017</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">H517Q</td>
<td align="left" valign="top">Human ALS patient-derived iPSCs</td>
<td align="left" valign="top">Nucleofection</td>
<td align="left" valign="top">Identified activated ERK and JNK signaling as critical drivers of neurodegeneration in mutant FUS MNs</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref7">Bhinge et al., 2017</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">R521H, P525L</td>
<td align="left" valign="top">Human ALS patient-derived iPSCs</td>
<td align="left" valign="top">Nucleofection</td>
<td align="left" valign="top">Uncovered a pathway of defective DNA ligation in <italic>FUS</italic>-linked ALS</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref98">Wang et al., 2018</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">R521H, P525L</td>
<td align="left" valign="top">Human ALS patient-derived iPSCs</td>
<td align="left" valign="top">Nucleofection</td>
<td align="left" valign="top">Metabolic dysfunction is not the underlying cause of the ALS-related phenotypes previously observed in these MNs</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref92">Vandoorne et al., 2019</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">R524S, P525L</td>
<td align="left" valign="top"><italic>C. legan</italic> knockin models</td>
<td align="left" valign="top">Nucleofection</td>
<td align="left" valign="top">Autophagy dysfunction likely contributes to protein homeostasis and neuromuscular defects in ALS <italic>FUS</italic> knockin animals</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref4">Baskoylu et al., 2022</xref>)</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2"><italic>TARDBP</italic></td>
<td align="left" valign="top">M337V</td>
<td align="left" valign="top"><italic>TARDBP-</italic>M337V patient-derived iPSCs</td>
<td align="left" valign="top">Nucleofection</td>
<td align="left" valign="top">The abnormal function of BDNF may explain the aberrant TDP-43 activity</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref90">Tann et al., 2019</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">M337V</td>
<td align="left" valign="top"><italic>TARDBP-</italic>M337V patient-derived iPSCs</td>
<td align="left" valign="top">Sendai virus-based vector</td>
<td align="left" valign="top">The MNs with <italic>TARDBP</italic> mutations impaired mitochondrial Ca<sup>2+</sup> uptake contributes to glutamate excitotoxicity</td>
<td align="left" valign="top">(<xref ref-type="bibr" rid="ref17">Dafinca et al., 2020</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>ALS, amyotrophic lateral sclerosis; MNs, motor neurons; iPSCs, induced pluripotent stem cells.</p>
</table-wrap-foot>
</table-wrap>
<sec id="sec8">
<title>SOD1</title>
<p>Several cells and animal models targeted on <italic>SOD1</italic> have been reported. A sgRNA was applied to disrupt <italic>SOD1</italic> via the facial vein, leading to decreased expression of <italic>SOD1</italic> protein in the spinal cord, reduced muscle atrophy, and delayed disease onset in mice models. With the improvement of motor neuron function, the survival time increased by 28&#x2013;30&#x2009;days (<xref ref-type="bibr" rid="ref26">Gaj et al., 2017</xref>). Other favorable results of <italic>SOD1</italic> decrease in the spinal cord were reported in three studies, which showed increased survivability (<xref ref-type="bibr" rid="ref56">Lim et al., 2020</xref>; <xref ref-type="bibr" rid="ref14">Chen et al., 2022</xref>). The CRISPR/Cas9 technology that can be used to validate the efficacy of rescuing iPSC-derived motor neuron cells from the harmful effects of the <italic>SOD1</italic> mutation has been described in several articles (<xref ref-type="bibr" rid="ref45">Kim et al., 2020</xref>; <xref ref-type="bibr" rid="ref21">Deng et al., 2021</xref>). <xref ref-type="bibr" rid="ref99">Wang et al. (2017)</xref> generated two human iPSC lines from ALS patients, <italic>SOD1<sup>+/A272C</sup></italic> and <italic>SOD1<sup>+/C14T</sup></italic> heterozygous disease-causing mutations. Then, they generated their respective isogenic disease-free iPSCs by CRISPR/Cas9 mediated gene correction (<xref ref-type="bibr" rid="ref99">Wang et al., 2017</xref>). This study may help identify biomarkers and pathways for ALS and offers new evidence for ALS therapy. Additionally, a recent study showed that CRISPR/Cas9-mediated gene editing is an effective strategy to target <italic>SOD1</italic>, leading to a disease-free condition in two ALS mouse models (<xref ref-type="bibr" rid="ref21">Deng et al., 2021</xref>). The main limitation of these studies is that the mice were treated at a young age before exhibiting symptoms of ALS. Therefore, the treatment&#x2019;s effectiveness would be uncertain in older mice with ALS phenotype.</p>
<p>In drug screening assay, <xref ref-type="bibr" rid="ref36">Imamura et al. (2017)</xref> used CRISPR/Cas9 mediated <italic>SOD1</italic> corrected iPSCs lines generated from one ALS patient carrying the L144FVX mutation in the <italic>SOD1</italic> gene and homologous arms corrected mutation as a control. The corrected cell line demonstrated a reversal of <italic>SOD1</italic>-related pathologic phenotypes, including increased motor neuron survival, reserved internal ATP level, and breakdown of misfolded SOD1 protein. They also found that bosutinib, one of the specific Src/c-Abl inhibitors, could modestly extend the survival of the SOD1 mutation mouse model of ALS, suggesting that Src/c-Abl may be a potential target for developing new drugs to treat ALS (<xref ref-type="bibr" rid="ref36">Imamura et al., 2017</xref>).</p>
</sec>
<sec id="sec9">
<title>C9ORF72</title>
<p><italic>C9orf72</italic> mutation, leading to an expansion of GGGGCC (G4C2) hexanucleotide repeat expansion (HRE) in the first intron, is the most significant gene discovery for ALS (<xref ref-type="bibr" rid="ref28">Gijselinck et al., 2012</xref>). The size of the hexanucleotide sequence is less than 24 repeats in a healthy person but can number in the thousands of repetitions in affected individuals (<xref ref-type="bibr" rid="ref35">Iacoangeli et al., 2019</xref>). Multiple studies have demonstrated that the <italic>C9orf72</italic> mutations affect subsequent protein synthesis and cause premature neuronal death by causing harmful either a gain or loss of function, such as impaired clearance of dipeptide proteins and excitotoxicity from the accumulation of glutamate receptors (<xref ref-type="bibr" rid="ref27">Ghasemi et al., 2021</xref>; <xref ref-type="bibr" rid="ref67">Meijboom et al., 2022</xref>). Therefore, reducing the expression of <italic>C9orf72</italic> is a potentially promising target in halting ALS disease.</p>
<p>The field of gene editing, especially the CRISPR/Cas9 system, offers potential treatment modalities for ALS pathology by physically excising the repeat expansion mutation from <italic>C9orf72</italic> at the genetic level. <xref ref-type="bibr" rid="ref67">Meijboom et al. (2022)</xref> administer AAV9 vectors containing gRNA and Cas9 into the bilateral striatum of aged 2&#x2013;3&#x2009;months <italic>C9orf72</italic>-associated mice, which rescues partial ALS phenotypes. Respectively, two separate studies also reported the utility of CRISPR/Cas9 in targeting either (G4C2) repeat DNA (<xref ref-type="bibr" rid="ref78">Pinto et al., 2017</xref>) or RNA to reduce repeat RNA transcription and decreased myotonia in the ALS mouse model. These findings are consistent with other reports demonstrating the positive benefit of excising the HRE in <italic>C9orf72</italic> (<xref ref-type="bibr" rid="ref1">Ababneh et al., 2020</xref>; <xref ref-type="bibr" rid="ref77">Piao et al., 2022</xref>), indicating potentially viable strategies for therapeutic intervention.</p>
</sec>
<sec id="sec10">
<title>FUS</title>
<p>The mutation of the <italic>FUS</italic> gene, a DNA/RNA-binding protein, in chromosome 16 was discovered as a causative factor for ALS in 2009. Serval of mutations in the <italic>FUS</italic> gene have been found in motor neurons of ALS patients, like C1574T, A1564G, G1566A, etc. (<xref ref-type="bibr" rid="ref50">Lattante et al., 2013</xref>; <xref ref-type="bibr" rid="ref22">Du et al., 2015</xref>), and these mutations cause up to 4% of familial ALS (<xref ref-type="bibr" rid="ref63">Mackenzie et al., 2010</xref>). Investigating the gene editing of <italic>FUS</italic> by the CRISPR/Cas9 system will provide a platform for revealing novel therapeutic entry points.</p>
<p><xref ref-type="bibr" rid="ref99">Wang et al. (2017)</xref> first successfully corrected the <italic>FUS<sup>+/G1566A</sup></italic> mutations in ALS iPSCs by CRISPR/Cas9 system, and the repaired ALS iPSCs possessed normal pluripotency. Furthermore, <xref ref-type="bibr" rid="ref7">Bhinge et al. (2017)</xref> obtained iPSCs from ALS patients for recessive H517Q mutation in the <italic>FUS</italic> gene and corrected this recessive mutation to wild-type using the CRISPR/Cas9 system. Their results confirmed that both p38 and ERK kinase are activated in mutant <italic>FUS</italic>, indicating that MAPK activation is a key pathway in <italic>FUS</italic> mutation in ALS (<xref ref-type="bibr" rid="ref7">Bhinge et al., 2017</xref>). Additionally, <xref ref-type="bibr" rid="ref30">Guo et al. (2017)</xref> proved that the different mutations in the <italic>FUS</italic> gene of motor neurons caused typical cytoplasmic hyperexcitability and progressive axonal transport defects, which were rescued by CRISPR/Cas9-mediated genetic correction of the <italic>FUS</italic> mutation in patient-derived iPSCs. As the above results indicated, CRISPR/Cas9 system provides a platform for revealing novel therapeutic entry points.</p>
</sec>
<sec id="sec11">
<title>TARDBP</title>
<p>Although the specific mechanisms by which TDP-43 protein, encoded by <italic>TARDBP</italic>, cause ALS is unknown, numerous studies have shown that a substantial fraction of ALS patients features abnormalities in TDP-43, whose function losses in the nucleus and gain of toxic in the cytoplasm (<xref ref-type="bibr" rid="ref48">Kuo et al., 2014</xref>; <xref ref-type="bibr" rid="ref19">De Conti et al., 2015</xref>). In addition, TDP-43 may involve stress granule formation and regulation of neurite growth (<xref ref-type="bibr" rid="ref86">Shelkovnikova et al., 2018</xref>; <xref ref-type="bibr" rid="ref110">Zuo et al., 2021</xref>; <xref ref-type="bibr" rid="ref66">McMillan et al., 2023</xref>), and the reduction of cytoplasmic TDP-43 levels can rescue neurons from death (<xref ref-type="bibr" rid="ref96">Walker et al., 2015</xref>). <xref ref-type="bibr" rid="ref10">Brown et al. (2022)</xref> revealed evidence that TDP-43 is a promising therapeutic target for ALS.</p>
<p>Currently, the application of CRISPR/Cas9-mediated genetic correction targeting <italic>TARDBP</italic> gene therapy is limited. To investigate the mechanisms of <italic>TARDBP</italic> mutations in ALS, <xref ref-type="bibr" rid="ref90">Tann et al. (2019)</xref> confirmed that hippocampal CA1-specific absence of TDP-43 enhanced the expression of <italic>Sod1</italic> mRNA and reduced dendrite complexity and spine. They also used CRISPR/Cas9 to correct M337V in three iPSC lines from ALS patients, and then these iPSCs were differentiated into excitatory cortical/hippocampal-like neurons. Their study indicated that M337V mutation in <italic>TARDB</italic>P is a direct cause of impaired BDNF secretion, essential for neuron survival, differentiation, and synaptic plasticity (<xref ref-type="bibr" rid="ref90">Tann et al., 2019</xref>).</p>
</sec>
</sec>
<sec id="sec12">
<title>Clinical trials on ALS worldwide</title>
<p>Although, four therapies (riluzole, edaravone, sodium phenylbutyrate and taurursodiol, and dextromethorphan-quinidine) have been approved now, but they could not stops or reverses disease progression (<xref ref-type="bibr" rid="ref68">Meijboom and Brown, 2022</xref>). Using ALS as the search term, 969 clinical trials were gathered from <ext-link xlink:href="http://clini-caltrials.gov" ext-link-type="uri">clini-caltrials.gov</ext-link> on 20 June 2023. Unfortunately, the bulk of ALS clinical trials have failed to show any promising outcomes during the past two decades. This is partially caused by the therapeutic agents&#x2019; low bioavailability, ineffective therapeutic delivery to the CNS, difficulties with therapeutic administration, dearth of clinically relevant disease models, lack of late diagnosis, effective biomarkers, and inadequate understanding of the underlying molecular mechanisms causing the disease (<xref ref-type="bibr" rid="ref39">Johnson et al., 2022</xref>). Therefore, new therapies and diagnostics are urgently needed to help with therapy and early diagnosis. All the current worldwide Phase III ALS clinical trials that are being summarized in <xref rid="tab3" ref-type="table">Table 3</xref>.</p>
<table-wrap position="float" id="tab3">
<label>Table 3</label>
<caption><p>Ongoing Phase III Clinical Trials on ALS Worldwide.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Clinical title</th>
<th align="left" valign="top">Study title</th>
<th align="left" valign="top">Agents</th>
<th align="left" valign="top">Locations</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">NCT04297683</td>
<td align="left" valign="top">Healey ALS platform trial-master protocol</td>
<td align="left" valign="top">Zilucoplan, Verdiperstat</td>
<td align="left" valign="top">United States</td>
</tr>
<tr>
<td align="left" valign="top">NCT05568615</td>
<td align="left" valign="top">Extension study following the studies MT-1186-A03 or A04 to evaluate the safety of oral edaravone in subjects with ALS</td>
<td align="left" valign="top">Edaravone MT-1186</td>
<td align="left" valign="top">Japan</td>
</tr>
<tr>
<td align="left" valign="top">NCT05151471</td>
<td align="left" valign="top">Efficacy and safety extension study of oral edaravone administered in subjects with ALS</td>
<td align="left" valign="top">Edaravone MT-1186</td>
<td align="left" valign="top">United States</td>
</tr>
<tr>
<td align="left" valign="top">NCT04768972</td>
<td align="left" valign="top">A study to evaluate the efficacy, safety, pharmacokinetics and pharmacodynamics of ION363 in amyotrophic lateral sclerosis participants with fused in sarcoma mutations</td>
<td align="left" valign="top">ION363</td>
<td align="left" valign="top">United States</td>
</tr>
<tr>
<td align="left" valign="top">NCT05193994</td>
<td align="left" valign="top">Triumeq in amyotrophic lateral sclerosis</td>
<td align="left" valign="top">Dolutegravir, Abacavir, Lamivudine</td>
<td align="left" valign="top">Australia</td>
</tr>
<tr>
<td align="left" valign="top">NCT04745299</td>
<td align="left" valign="top">Evaluation the efficacy and safety of mutiple lenzumestrocel treatment in patients with ALS</td>
<td align="left" valign="top">Riluzole, Lenzumestrocel</td>
<td align="left" valign="top">Korea</td>
</tr>
<tr>
<td align="left" valign="top">NCT05866926</td>
<td align="left" valign="top">A multicenter, open-label extension study to investigate the long-term safety of FAB122 in patients with ALS</td>
<td align="left" valign="top">FAB122</td>
<td align="left" valign="top">Barcelona, Spain</td>
</tr>
<tr>
<td align="left" valign="top">NCT03127267</td>
<td align="left" valign="top">Efficacy and safety of masitinib vs. placebo in the treatment of ALS patients</td>
<td align="left" valign="top">Masitinib, Riluzole</td>
<td align="left" valign="top">United States</td>
</tr>
<tr>
<td align="left" valign="top">NCT05753852</td>
<td align="left" valign="top">Open Label extension of TUDCA-ALS study</td>
<td align="left" valign="top">Tauroursodeoxycholic</td>
<td align="left" valign="top">France</td>
</tr>
<tr>
<td align="left" valign="top">NCT04856982</td>
<td align="left" valign="top">A study of BIIB067 (Tofersen) initiated in clinically presymptomatic adults with a confirmed superoxide dismutase 1 mutation</td>
<td align="left" valign="top">Tofersen</td>
<td align="left" valign="top">United States</td>
</tr>
<tr>
<td align="left" valign="top">NCT04220190</td>
<td align="left" valign="top">RAPA-501 therapy for ALS</td>
<td align="left" valign="top">RAPA-501 autologous T cells</td>
<td align="left" valign="top">United States</td>
</tr>
<tr>
<td align="left" valign="top">NCT04057898</td>
<td align="left" valign="top">Evaluation of MN-166 (Ibudilast) for 12&#x2009;months followed by an open-label extension for 6&#x2009;months in patients with ALS</td>
<td align="left" valign="top">MN-166</td>
<td align="left" valign="top">United States</td>
</tr>
<tr>
<td align="left" valign="top">NCT04302870</td>
<td align="left" valign="top">Motor neurone disease-systematic multi-arm adaptive randomized trial</td>
<td align="left" valign="top">Trazodone, Memantine, Amantadine</td>
<td align="left" valign="top">United States</td>
</tr>
<tr>
<td align="left" valign="top">NCT05156320</td>
<td align="left" valign="top">Efficacy and safety of apitegromab in patients with later-onset spinal muscular atrophy treated with nusinersen or risdiplam</td>
<td align="left" valign="top">Apitegromab</td>
<td align="left" valign="top">United States</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="sec13">
<title>Conclusions and future</title>
<p>We discussed numerous recent studies that have implicated gene editing, especially CRISPR/Cas9, to investigate the pathophysiology of ALS by animal models or iPSCs in this review. There remain limitations with these approaches, such as off-target effects, limited size of delivery vehicle, and low efficiency of gene correction through the HDR mechanism (<xref ref-type="bibr" rid="ref70">Modell et al., 2022</xref>).</p>
<p>Over 50 genes, in which <italic>SOD1</italic>, <italic>C9orf72</italic>, <italic>TARDBP</italic>, and <italic>FUS</italic> are commonly genetic alterations, are listed as ALS-associated genes. Studies using CRISPR/Cas9-mediated <italic>in vivo</italic> genome editing of <italic>SOD1</italic>, <italic>C9orf72</italic>, <italic>TARDBP</italic>, and <italic>FUS</italic> functions show that this technique can identify the underlying molecular mechanism and reverse the pathologic phenotype in patient-derived disease models. These studies suggest that CRISPR/Cas9 system may play a potential role in gene therapy for ALS. However, more thorough studies are still needed to investigate the various underlying mechanisms of ALS to determine the treatment for ALS.</p>
</sec>
<sec id="sec14">
<title>Author contributions</title>
<p>YS, YZ, and LL wrote the manuscript with support from QG, DY, and MS. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec sec-type="funding-information" id="sec15">
<title>Funding</title>
<p>This work was supported by grants from the National Key R&#x0026;D Program of China (2022YFC2703700 and 2019YFA0802600) and the National Natural Science Foundation of China (81974244 and 81570960).</p>
</sec>
<sec sec-type="COI-statement" id="sec16">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec38" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
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