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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Neurosci.</journal-id>
<journal-title>Frontiers in Neuroscience</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Neurosci.</abbrev-journal-title>
<issn pub-type="epub">1662-453X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fnins.2023.1204233</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Neuroscience</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>New insight on the enteric cholinergic innervation of the pig colon by central and peripheral nervous systems: reduction by repeated loperamide administration</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes"><name><surname>Yuan</surname> <given-names>Pu-Qing</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref><xref rid="aff2" ref-type="aff"><sup>2</sup></xref><xref rid="c001" ref-type="corresp"><sup>&#x002A;</sup></xref><uri xlink:href="https://loop.frontiersin.org/people/691051/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Li</surname> <given-names>Tao</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref></contrib>
<contrib contrib-type="author"><name><surname>Million</surname> <given-names>Mulugeta</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref></contrib>
<contrib contrib-type="author"><name><surname>Larauche</surname> <given-names>Muriel</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref><uri xlink:href="https://loop.frontiersin.org/people/228010/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Atmani</surname> <given-names>Karim</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref><uri xlink:href="https://loop.frontiersin.org/people/587488/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Bellier</surname> <given-names>Jean-Pierre</given-names></name><xref rid="aff3" ref-type="aff"><sup>3</sup></xref><uri xlink:href="https://loop.frontiersin.org/people/378846/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Tach&#x00E9;</surname> <given-names>Yvette</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref><xref rid="aff2" ref-type="aff"><sup>2</sup></xref><uri xlink:href="https://loop.frontiersin.org/people/3800/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>CURE/Digestive Diseases Research Center, Vatche and Tamar Manoukian Digestive Diseases Division, UCLA David Geffen School of Medicine</institution>, <addr-line>Los Angeles, CA</addr-line>, <country>United States</country></aff>
<aff id="aff2"><sup>2</sup><institution>VA GLAHS</institution>, <addr-line>Los Angeles, CA</addr-line>, <country>United States</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Neurology, Brigham and Women&#x2019;s Hospital</institution>, <addr-line>Boston, MA</addr-line>, <country>United States</country></aff>
<author-notes>
<fn fn-type="edited-by" id="fn0003">
<p>Edited by: Karen-Anne McVey Neufeld, McMaster University, Canada</p>
</fn>
<fn fn-type="edited-by" id="fn0004">
<p>Reviewed by: Jan D. Huizinga, McMaster University, Canada; Peter Neckel, University of T&#x00FC;bingen, Germany</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Pu-Qing Yuan, <email>pqyuan@mednet.ucla.edu</email></corresp>
</author-notes>
<pub-date pub-type="epub">
<day>15</day>
<month>08</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>17</volume>
<elocation-id>1204233</elocation-id>
<history>
<date date-type="received">
<day>11</day>
<month>04</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>24</day>
<month>07</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2023 Yuan, Li, Million, Larauche, Atmani, Bellier and Tach&#x00E9;.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Yuan, Li, Million, Larauche, Atmani, Bellier and Tach&#x00E9;</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Introduction</title>
<p>The central and peripheral nervous systems provide cholinergic innervation in the colon. The ability to assess their neuroanatomical distinctions is still a challenge. The pig is regarded as a relevant translational model due to the close similarity of its enteric nervous system (ENS) with that of human. Opioid-induced constipation is one of the most common side effects of opioid therapy.</p>
</sec>
<sec>
<title>Methods</title>
<p>We developed an approach to differentiate the central and peripheral cholinergic innervation of the pig colon using double immunolabeling with a novel mouse anti-human peripheral type of choline acetyltransferase (hpChAT) antibody combined with a rabbit anti-common type of ChAT (cChAT) antibody, a reliable marker of cholinergic neurons in the central nervous system. We examined their spatial configurations in 3D images of the ENS generated from CLARITY-cleared colonic segments. The density was quantitated computationally using Imaris 9.7. We assessed changes in the distal colon induced by daily oral treatment for 4 &#x2009;weeks with the &#x03BC; opioid receptor agonist, loperamide (0.4 or 3&#x2009; mg/kg).</p>
</sec>
<sec>
<title>Results</title>
<p>The double labeling showed strong cChAT immunoreactive (ir) fibers in the cervical vagus nerve and neuronal somata and fibers in the ventral horn of the sacral (S2) cord while hpChAT immunoreactivity was visualized only in the ENS but not in the vagus or sacral neural structures indicating the selectivity of these two antibodies. In the colonic myenteric plexus, dense hpChAT-ir neurons and fibers and varicose cChAT-ir fibers surrounding hpChAT-ir neurons were simultaneously visualized in 3D. The density of cChAT-ir varicose fibers in the outer submucosal plexus of both males and females were higher in the transverse and distal colon than in the proximal colon and in the myenteric plexus compared to the outer submucosal plexus and there was no cChAT innervation in the inner submucosal plexus. The density of hpChAT in the ENS showed no segmental or plexus differences in both sexes. Loperamide at the highest dose significantly decreased the density hpChAT-ir fibers + somata in the myenteric plexus of the distal colon.</p>
</sec>
<sec>
<title>Discussion</title>
<p>These data showed the distinct density of central cholinergic innervation between myenteric and submucosal plexuses among colonic segments and the localization of cChAT-ir fibers around peripheral hpChAT neurons in 3D. The reduction of cholinergic myenteric innervation by chronic opiate treatment points to target altered prokinetic cholinergic pathway to counteract opiate constipation.</p>
</sec>
</abstract>
<kwd-group>
<kwd>central and peripheral cholinergic innervation</kwd>
<kwd>choline acetyltransferase</kwd>
<kwd>3D imaging</kwd>
<kwd>enteric nervous system</kwd>
<kwd>porcine colon</kwd>
</kwd-group>
<counts>
<fig-count count="9"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="86"/>
<page-count count="17"/>
<word-count count="12431"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Gut-Brain Axis</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec>
<title>Highlights</title>
<p>
<list list-type="bullet">
<list-item>
<p>This study established novel approaches enabling to visualize simultaneously the central and peripheral cholinergic innervation and to quantitate computationally their densities within the enteric nerve system (ENS) of the pig colon.</p>
</list-item>
<list-item>
<p>The 3D images generated from CLARITY-cleared and immunostained colonic samples revealed that the cholinergic myenteric neurons are closely surrounded by central cholinergic varicose fibers in dot-like structures, nerve terminals.</p>
</list-item>
<list-item>
<p>Quantitative analysis of the density of colonic cholinergic innervation showed differences between segments and plexuses in the central but not peripheral cholinergic innervation with no sex difference.</p>
</list-item>
<list-item>
<p>Oral administration of the &#x03BC;-opioid receptor agonist, loperamide at 3&#x2009;mg/kg/day for 4&#x2009;weeks decreased the peripheral cholinergic density in the myenteric plexus of the pig distal colon.</p>
</list-item>
</list>
</p>
</sec>
<sec sec-type="intro" id="sec1">
<label>1.</label>
<title>Introduction</title>
<p>The cholinergic innervation of the colon encompasses the central (extrinsic) and peripheral (enteric) nervous systems (<xref ref-type="bibr" rid="ref25">Gonella et al., 1987</xref>; <xref ref-type="bibr" rid="ref22">Furness et al., 2014</xref>; <xref ref-type="bibr" rid="ref56">Meerschaert et al., 2022</xref>). The central parasympathetic efferent cholinergic nerve fibers originate from neurons in the dorsal motor nucleus of the vagus which innervates more prominently the upper segments of the colon (<xref ref-type="bibr" rid="ref5">Berthoud et al., 1991</xref>; <xref ref-type="bibr" rid="ref9">Browning and Travagli, 2014</xref>; <xref ref-type="bibr" rid="ref72">Tao et al., 2021</xref>). The distal colon receives efferent innervation originating from cholinergic neurons located in the sacral spinal cord with axons running through the pelvic nerve either directly to the colon wall or synapsing onto nerve cell bodies located within the inferior hypogastric plexus with postganglionic fibers entering the colon (<xref ref-type="bibr" rid="ref19">Fukai and Fukuda, 1985</xref>; <xref ref-type="bibr" rid="ref40">Keast and de Groat, 1989</xref>; <xref ref-type="bibr" rid="ref62">Olsson et al., 2006</xref>). However, it is to note that there is inter-species variability to the extent of vagal and pelvic innervation pattern across the length of the colon (<xref ref-type="bibr" rid="ref25">Gonella et al., 1987</xref>).</p>
<p>The enteric nervous system consists of two main ganglionated layers: the myenteric plexus that lies between the longitudinal and circular layers of the muscularis externa and the submucosal plexuses within the submucosa (<xref ref-type="bibr" rid="ref74">Timmermans et al., 1997</xref>; <xref ref-type="bibr" rid="ref8">Brown and Timmermans, 2004</xref>; <xref ref-type="bibr" rid="ref22">Furness et al., 2014</xref>). In the large mammals, a further division of the submucosal plexuses consists of the outer submucosal plexus adjacent to the luminal side of the circular muscle layer, and the inner submucosal plexus located close to the abluminal side of the lamin muscularis mucosae (<xref ref-type="bibr" rid="ref75">Timmermans et al., 2001</xref>; <xref ref-type="bibr" rid="ref7">Brehmer et al., 2010</xref>; <xref ref-type="bibr" rid="ref65">Petto et al., 2015</xref>). The ENS in the colon is endowed of complex reflex circuits that play a role in controlling several functions including motility, transmucosal fluid exchange, local blood flow and immune status (<xref ref-type="bibr" rid="ref21">Furness, 2008</xref>; <xref ref-type="bibr" rid="ref69">Spencer et al., 2016</xref>; <xref ref-type="bibr" rid="ref67">Schneider et al., 2019</xref>).</p>
<p>Functional and electrophysiological studies indicate that acetylcholine is the primary enteric excitatory neurotransmitter in the gut (<xref ref-type="bibr" rid="ref80">Wood, 1987</xref>; <xref ref-type="bibr" rid="ref21">Furness, 2008</xref>). In particular, the administration of exogenous acetylcholine binds to the acetylcholine receptors and promotes colonic mobility <italic>via</italic> the stimulation of fast excitatory synaptic transmission (<xref ref-type="bibr" rid="ref66">Schneider and Galligan, 2000</xref>; <xref ref-type="bibr" rid="ref24">Galligan, 2002</xref>). To ascertain precisely the central cholinergic innervation within the different regions of the colon and the spatial configuration of cholinergic central axons and peripheral neurons in the ENS are fundamental to the understanding of the brain-gut interactions <italic>via</italic> cholinergic pathway and to optimize neuromodulation strategies. Of importance is the use of specific markers to discriminate central from peripheral cholinergic nerve fibers and relevant approaches to visualize their three-dimensional (3D) architecture and topography in the colonic ENS. Recently, we produced a novel mouse anti-human peripheral form of choline acetyltransferase (hpChAT) antibody that proved to be without cross-reactivity with the common type of ChAT (cChAT) expressed preferentially in the CNS (<xref ref-type="bibr" rid="ref4">Bellier et al., 2019</xref>). The hpChAT antibody yielded intense staining in neuronal cells and fibers of the human colon but not in the brain (<xref ref-type="bibr" rid="ref4">Bellier et al., 2019</xref>). This antibody also allowed us to visualize the peripheral cholinergic innervation of the human sigmoid colon using CLARITY and imaging in 3D structure (<xref ref-type="bibr" rid="ref82">Yuan et al., 2021a</xref>).</p>
<p>The porcine gastrointestinal (GI) tract is increasingly regarded as a useful research model due to its structural and functional similarities with those of human (<xref ref-type="bibr" rid="ref26">Gonzalez et al., 2015</xref>). Compared to the mouse, rat, dog, cat or horse, both the pig and human are omnivores and colon fermenters and have similar metabolic and intestinal physiological processes and microbial composition (<xref ref-type="bibr" rid="ref39">Kararli, 1995</xref>). Among important anatomical similarities relevant to colonic function, there are the taenia and haustra/sacculation which are both present in the pig and human colon, while missing in the dog and most rodents (<xref ref-type="bibr" rid="ref57">Miller and Ullrey, 1987</xref>; <xref ref-type="bibr" rid="ref39">Kararli, 1995</xref>; <xref ref-type="bibr" rid="ref64">Patterson et al., 2008</xref>). In addition, the submucosal plexus encompasses 2&#x2013;3 layers in the pig and human colon (<xref ref-type="bibr" rid="ref35">Hoyle and Burnstock, 1989</xref>; <xref ref-type="bibr" rid="ref75">Timmermans et al., 2001</xref>; <xref ref-type="bibr" rid="ref65">Petto et al., 2015</xref>) while composed of only one layer in rodents (<xref ref-type="bibr" rid="ref39">Kararli, 1995</xref>). Additionally, the pig displays a chromosomal structure and genome size with 60% sequence homology and 93% correspondence in relevant biomarkers compared to human (<xref ref-type="bibr" rid="ref70">Stevens et al., 1986</xref>; <xref ref-type="bibr" rid="ref73">Thomas et al., 2003</xref>; <xref ref-type="bibr" rid="ref60">Murphy et al., 2005</xref>). Our recent comparison of transcriptomic profiles in the colonic ENS between the pig and human revealed highly conserved core transcriptional programs with region-dependent patterns between both species (<xref ref-type="bibr" rid="ref51">Li et al., 2023</xref>). We found that regional-specific transcriptomic responses to vagal nerve stimulation shared 96% of the conserved core transcriptional programs in the myenteric ganglia between the pig and human (<xref ref-type="bibr" rid="ref51">Li et al., 2023</xref>). Lastly, the size of the pig allows us to use drug dose comparable to that of human as well as to evaluate human-size tailored medical devices (<xref ref-type="bibr" rid="ref85">Ziegler et al., 2016</xref>). Thus, several components make the pig a preferred translational model (<xref ref-type="bibr" rid="ref26">Gonzalez et al., 2015</xref>; <xref ref-type="bibr" rid="ref54">Lunney et al., 2021</xref>).</p>
<p>Opioid drugs are potent pain-relieving medications and prescribed in over 40% of patients including those with advanced cancer (<xref ref-type="bibr" rid="ref32">Higginson and Gao, 2012</xref>; <xref ref-type="bibr" rid="ref23">Gagnon et al., 2015</xref>) and other pathologies (<xref ref-type="bibr" rid="ref14">Dart et al., 2015</xref>). One of the most common side effects of opioid use is constipation (<xref ref-type="bibr" rid="ref63">Pappagallo, 2001</xref>; <xref ref-type="bibr" rid="ref27">Gregorian et al., 2017</xref>; <xref ref-type="bibr" rid="ref59">M&#x00FC;ller-Lissner et al., 2017</xref>) that relates to the activation of enteric &#x03BC;-opiate receptors increasing tonic non-propulsive contractions in the small and large intestine, colonic fluid absorption, and stool desiccation (<xref ref-type="bibr" rid="ref6">Bharucha et al., 2013</xref>; <xref ref-type="bibr" rid="ref58">Mori et al., 2013</xref>; <xref ref-type="bibr" rid="ref11">Camilleri et al., 2014</xref>; <xref ref-type="bibr" rid="ref16">Dorn et al., 2014</xref>). It has been speculated that a defective cholinergic innervation of human colon may exist in severe chronic idiopathic (slow transit type) constipation (<xref ref-type="bibr" rid="ref10">Burleigh, 1988</xref>; <xref ref-type="bibr" rid="ref2">Bassotti et al., 1993</xref>). However, it is still unknown whether repeated opioid administration change the density of the central and peripheral cholinergic innervation of the colon.</p>
<p>In the present study, we first established a new approach to differentiate central and peripheral cholinergic ENS innervation visualized in 3D structures in the pig colon using a modified CLARITY tissue clearing technique combined with the double labeling of cChAT and hpChAT. The tissue clearing technic removed the light scattering lipids from tissue samples, while keeping the proteins and nucleic acids, allowing for deep penetration of macromolecules such as antibodies, and light for fluorescent 3D microscopy (<xref ref-type="bibr" rid="ref13">Chung and Deisseroth, 2013</xref>; <xref ref-type="bibr" rid="ref46">Lai et al., 2016</xref>). Secondly, we digitally traced and quantitated the central cholinergic fibers and peripheral cholinergic somata and fibers in the whole mount preparations of ENS using Imaris 9.7 for Neuroscientists, a software for 3D/4D visualization, segmentation and automated tracking of relevant components. Then, we compared the density of central and peripheral cholinergic innervation among the three enteric plexuses and colonic segments in both males and females. Lastly, we examined whether the high-affinity &#x03BC;-opioid receptor agonist, loperamide (<xref ref-type="bibr" rid="ref15">DeHaven-Hudkins et al., 1999</xref>), given as a repeated daily oral treatment for 4&#x2009;weeks alters the density of central and peripheral cholinergic innervation in the pig distal colon.</p>
</sec>
<sec sec-type="materials|methods" id="sec2">
<label>2.</label>
<title>Materials and methods</title>
<sec id="sec3">
<label>2.1.</label>
<title>Animals</title>
<p>Eighteen Yucatan minipigs (nine of each castrated males and intact females, ~6&#x2009;months old, 25&#x2013;30&#x2009;kg) were obtained from S&#x0026;S Farms (Farms, Ramona, CA). They were group housed in pens (either bedding or grate floor, depending on housing availabilities, 2 pigs/pen, 42&#x2009;ft<sup>2</sup>) in an environmentally controlled room (lights: on/off 6&#x2009;AM/6&#x2009;PM, temperature: 61&#x2013;81&#x00B0;F) under specific pathogen-free conditions. Pigs received <italic>ad libitum</italic> access to diet (5p94 Prolab mini pig diet, PMI Nutrition, St. Louis, MO) and filtered tap water. All animal care and procedures were performed following National Institutes of Health guidelines for the humane use of animals and in accordance with the guidelines of the University of California at Los Angeles (UCLA) Institutional Animal Care and Use Committee, Chancellor&#x2019;s Animal Research Committee (ARC) (approval protocol 2018-074-01). All efforts were made to avoid suffering.</p>
</sec>
<sec id="sec4">
<label>2.2.</label>
<title>Treatments</title>
<p>Six pigs (three of each sex) were left untreated (na&#x00EF;ve pigs). The remaining twelve pigs were randomly divided into three groups (4/group, 2 of each sex) and given orally 0.4 or 3&#x2009;mg/kg/day loperamide hydrochloride (2&#x2009;mg/caplet, SDA Laboratories, Wellspring Meds, USA) for four weeks. The caplets were embedded in a palatant containing bananas, marshmallows or yogurts mixed with honey. The vehicle group received oral palatant only.</p>
</sec>
<sec id="sec5">
<label>2.3.</label>
<title>Tissue collections</title>
<p>Na&#x00EF;ve pigs were fasted for 12&#x2009;h and anaesthetized by an intramuscular injection of midazolam (1&#x2009;mg/kg, cat. # 067595, Covetrus, Dublin, OH), ketamine (15&#x2009;mg/kg, cat. # 068317, Covetrus) and meloxicam (0.3&#x2009;mg/kg, cat. # 049755, Covetrus). This was followed with an intravenous injection of pentobarbital (100&#x2009;mg/kg, Abbott Laboratories, North Chicago, IL) for euthanasia followed by collection of colonic tissues. It is to note that the longitudinal muscle layer of the pig proximal colon is thickened into three muscular bands named the taeniae, and the wall between the taeniae bulges out to form rows of sacculation, the haustra. The centripetal part of the pig proximal colon has two taeniae and two rows of haustra, which gradually disappear in the centrifugal part (<xref ref-type="bibr" rid="ref30">Hedemann et al., 2002</xref>). The full thickness colonic samples (about 3&#x2013;4&#x2009;cm long) were harvested between the taenia about 10&#x2009;cm from the ceco-colic junction for the proximal colon, about 10&#x2009;cm from the end of the proximal segment for the transverse colon (about 10&#x2009;cm from the end of the centrifugal spiral colon) and about 20&#x2009;cm from the ano-rectum for the distal colon. The cervical vagal nerve (left side, 1&#x2009;cm) and sacral spinal cord (S2, 1&#x2009;cm) were dissected from one male na&#x00EF;ve pig. In opiate-treated pigs, the colonic specimens were collected from the distal colon 12&#x2009;h after the last oral administration of vehicle or loperamide as described above. All samples were immediately immersed in Belzer UW<sup>&#x00AE;</sup> Cold Storage Solution (Bridge to Life Ltd., Columbia, SC) on ice.</p>
</sec>
<sec id="sec6">
<label>2.4.</label>
<title>Clarity clearing of the muscularis externa</title>
<p>The protocol of passive CLARITY for human colon detailed previously (<xref ref-type="bibr" rid="ref82">Yuan et al., 2021a</xref>) was modified to clear the muscularis externa of pig proximal colon collected between the taeniae where the layer of longitudinal muscle is thinner and easier to perform the CLARITY protocol and whole mount preparation. Briefly, two pieces of proximal colon (3 &#x00D7; 4&#x2009;cm, one na&#x00EF;ve male pig) were pinned-flat with mucosa facing up on the Sylgard-coated dishes and immersed in ice-cold 4% paraformaldehyde (Sigma-Aldrich, St Louis, MO) in phosphate buffered saline (PBS). On the second day, the mucosa, submucosa and serosa were peeled off from flat samples and the muscularis externa was cut into small pieces (1&#x2009;&#x00D7;&#x2009;1&#x2009;cm) and then immersed in an ice-cold hydrogel solution containing a mixture of 4% acrylamide (BIO-RAD, Hercules, CA) and 0.25% VA044 (Wako, Richmond, VA) in 1&#x00D7; PBS (pH 7.4) and maintained at 4&#x00B0;C for 3&#x2009;days for hydrogel-tissue hybridization. Samples were transferred to 50&#x2009;mL conical tubes containing 15&#x2009;mL of fresh hydrogel solution to replace all oxygen (known to inhibit the acrylamide polymerization) with pure nitrogen gas. The hydrogel polymerization was initiated by submerging the conical tubes with tissue samples in a temperature-controlled 37&#x00B0;C water bath (Precision Scientific Water Bath Model 182, Thermo Scientific, Marietta, Ohio) for 3&#x2009;h. The excess hydrogel monomers were washed out from inside the muscularis externa on a shaker/rotator plate (70&#x2009;rpm, New Brunswick Scientific Co., Edison, NJ) with a clearing solution containing 4% sodium dodecyl sulfate (Sigma-Aldrich) in sodium borate buffer (200&#x2009;mM, pH 8.5) (Sigma-Aldrich) at 37&#x00B0;C for about 1&#x2009;week until clearing is achieved. Thereafter, samples were placed in 0.1% Triton-X 100 (Sigma-Aldrich) in 1&#x00D7; PBS (pH 7.4) on a shaker plate (New Brunswick Scientific Co.) for one day (37&#x00B0;C, 70&#x2009;rpm) to wash out sodium dodecyl sulfate micelles. A previous report indicated that omitting paraformaldehyde and bisacrylamide from the original hydrogel composition including 4% paraformaldehyde, 4% acrylamide, 0.05% bis-acrylamide and 0.25% VA-044 did not change the degree of protein loss compared to paraformaldehyde-fixed tissue in 8% sodium dodecyl sulfate clearing bath solutions (<xref ref-type="bibr" rid="ref13">Chung and Deisseroth, 2013</xref>). This protocol speeded up CLARITY tissue clearing and made the tissue more porous, facilitating antibody tissue penetration and improving immunolabeling (<xref ref-type="bibr" rid="ref81">Yang et al., 2014</xref>). The immunostaining performed on samples prepared with this modified protocol showed the same intensity as cleared tissue samples processed with the original hydrogel solution (<xref ref-type="bibr" rid="ref81">Yang et al., 2014</xref>). We observed that tissue samples prepared with 4% acrylamide and 0.25% VA-044 exhibited slightly more swelling than those processed with the original hydrogel solution. However, they shrank back to their original size within a few hours in the 0.1% Triton-X 100 PBS as previously reported (<xref ref-type="bibr" rid="ref81">Yang et al., 2014</xref>). We did not find perceptible alterations in the tissue structure and morphology caused by the tissue volume expansion-contraction.</p>
</sec>
<sec id="sec7">
<label>2.5.</label>
<title>Whole mount preparation of colonic enteric plexuses</title>
<p>Colonic samples (2 &#x00D7; 4&#x2009;cm) dissected in the area between the taeniae from the proximal, transverse and distal colon of na&#x00EF;ve pigs (<italic>n</italic>&#x2009;=&#x2009;6, 3 of each sex) and distal colon of vehicle- or loperamide-treated pigs (<italic>n</italic>&#x2009;=&#x2009;12, 6 of each sex) were stretched in both dimensions, pinned-flat with mucosa facing up on the Sylgard-coated dishes and immersed in an ice-cold 4% paraformaldehyde in PBS overnight at 4&#x00B0;C. After washing with PBS at room temperature for 3 &#x00D7; 30&#x2009;min, the mucosa layer was scraped off. The whole submucosa was peeled off from the muscular externa and separated into the inner submucosal and outer submucosal plexuses with a curved fine spring scissors (No. 15123, Fine Science Tools, Foster City, CA). The circular muscle was removed bundle by bundle and then the preparations were turned over to remove fat and blood vessels from the serosa. The myenteric plexus adhered to the longitudinal muscle.</p>
</sec>
<sec id="sec8">
<label>2.6.</label>
<title>Cryostat sectioning of cervical vagal nerve and sacral spinal cord</title>
<p>The dissected cervical vagus nerve and sacral spinal cord at S2 were fixed overnight in 4% paraformaldehyde in PBS at 4&#x00B0;C, cryoprotected overnight in 20% sucrose in PBS and subsequently embedded in optimal cutting temperature compound (OCT, Thermo Fisher Scientific, Waltham, MA) on dry ice. Samples were cut in 25-&#x03BC;m thick coronal sections with a cryostat (Leica CM3050 S, Leica Microsystems Nussloch GmbH, Nussloch, Germany) at -20&#x00B0;C.</p>
</sec>
<sec id="sec9">
<label>2.7.</label>
<title>Double immunostaining</title>
<p>CLARITY-cleared samples, whole mount preparations and frozen sections were transferred into Corning&#x2122; Costar&#x2122; Flat Bottom 24 Well Plates (Fisher Scientific, Hampton, NH) for free-floating double immunolabeling with the samples floating in solution for antibody incubation and washing under gentle shaking (90&#x2009;rpm, Corning&#x2122; LSE&#x2122; Low Speed Orbital Shaker, Fisher Scientific, Canoga Park, CA). After immersion in 10% normal donkey serum in PBS with 0.3% Triton-X 100 (one day for CLARITY-cleared samples at 4&#x00B0;C, 30&#x2009;min for whole mount preparations and frozen sections at room temperature) to block non-specific interactions and enhance permeabilization, samples were incubated with primary antibodies followed by fluorescent-dye conjugated secondary antibodies (<xref rid="tab1" ref-type="table">Table 1</xref>). Samples were not mounted on slides until after completing the immunohistochemistry process.</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Immunofluorescence reagents.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th/>
<th align="left" valign="top">Name</th>
<th align="left" valign="top">Immunogen</th>
<th align="left" valign="top">Host</th>
<th align="left" valign="top">Source/product no.</th>
<th align="center" valign="top">Dilution</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle" rowspan="4">Primary antibodies</td>
<td align="left" valign="middle">hpChAT</td>
<td align="left" valign="middle">CSYKALLDRTQSSRK (Pat. 04412018JP, 2018)</td>
<td align="left" valign="middle">Mouse</td>
<td align="left" valign="middle">Dr. Bellier/H3</td>
<td align="center" valign="middle">1:2,000&#x2013;4,000</td>
</tr>
<tr>
<td align="left" valign="middle">cChAT</td>
<td align="left" valign="middle">FVLDVVINFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGGGCGLNGANRWYDKSLQ, plus MRGSHHHHHHGS of N-terminal Tag and PSLIS of 3&#x2032; region</td>
<td align="left" valign="middle">Rabbit</td>
<td align="left" valign="middle">Dr. Kimura/98</td>
<td align="center" valign="middle">1:1,000</td>
</tr>
<tr>
<td align="left" valign="middle">ChAT</td>
<td align="left" valign="middle">human placental ChAT</td>
<td align="left" valign="middle">Goat</td>
<td align="left" valign="middle">Chemicon/AB144p</td>
<td align="center" valign="middle">1:200</td>
</tr>
<tr>
<td align="left" valign="middle">HuC/D</td>
<td align="left" valign="middle">human HuC/HuD neuronal protein</td>
<td align="left" valign="middle">Mouse, monoclonal (clone 16A11)</td>
<td align="left" valign="middle">Life Technologies/A-21271</td>
<td align="center" valign="middle">1:500</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Secondary antibodies</td>
<td align="left" valign="top">Alexa 405-conjugated anti-mouse IgG</td>
<td align="left" valign="middle">mouse IgG (H&#x2009;+&#x2009;L)</td>
<td align="left" valign="middle">Donkey</td>
<td align="left" valign="middle">Abcam/ab175659</td>
<td align="center" valign="middle">1:400</td>
</tr>
<tr>
<td align="left" valign="top">Alexa 488-conjugated anti-rabbit IgG</td>
<td align="left" valign="middle">rabbit IgG (H&#x2009;+&#x2009;L)</td>
<td align="left" valign="middle">Donkey</td>
<td align="left" valign="middle">Jackson Imm Res/AB_2340846</td>
<td align="center" valign="middle">1:400</td>
</tr>
<tr>
<td align="left" valign="top">Alexa 555-conjugated anti-goat IgG</td>
<td align="left" valign="middle">goat IgG (H&#x2009;+&#x2009;L)</td>
<td align="left" valign="middle">Donkey</td>
<td align="left" valign="middle">Abcam/ab150062</td>
<td align="center" valign="middle">1:400</td>
</tr>
<tr>
<td align="left" valign="middle">Normal serum</td>
<td align="left" valign="top">Normal donkey serum</td>
<td align="left" valign="middle">(&#x2212;)</td>
<td align="left" valign="middle">Donkey</td>
<td align="left" valign="middle">Jackson Imm Res</td>
<td align="center" valign="middle">1:10</td>
</tr>
</tbody>
</table>
</table-wrap>
<sec id="sec10">
<label>2.7.1.</label>
<title>hpChAT and HuC/D</title>
<p>To determine the capacity of the novel mouse anti-hpChAT antiserum (<xref ref-type="bibr" rid="ref4">Bellier et al., 2019</xref>) to label pig colonic enteric neurons, a double immunolabeling of hpChAT and HuC/D, a pan-neuronal marker (<xref ref-type="bibr" rid="ref52">Lin et al., 2002</xref>) was performed with whole mount preparations of myenteric plexus from one na&#x00EF;ve pig using a sequential staining procedure which allowed us to use two mouse monoclonal antibodies in the same preparation (<xref ref-type="bibr" rid="ref33">Ho et al., 2003</xref>). The preparations were incubated first with the mouse anti-hpChAT antibody for 5&#x2009;days at 4&#x00B0;C followed by donkey anti-mouse Alexa Fluor<sup>&#x00AE;</sup> 488 (<xref rid="tab1" ref-type="table">Table 1</xref>) for 3&#x2009;h at room temperature. Samples were then incubated with mouse anti-HuC/D for 1&#x2009;day at 4&#x00B0;C followed by donkey anti-mouse Alexa Fluor<sup>&#x00AE;</sup> 405 for 3&#x2009;h at room temperature. This strategy allows us to determine the feasibility of this sequential staining by visualizing whether we can detect neurons only labeled by HuC/D (blue color). Samples were washed with PBS at room temperature for 1&#x2009;h after each first and second antibody incubation and then were mounted onto Fisherbrand&#x2122; Superfrost&#x2122; Plus Microscope Slides (Fisher Scientific, Hampton, NH) with VECTASHIELD<sup>&#x00AE;</sup> antifade mounting medium (Vector Laboratories, Newark, CA). The double labeling of hpChAT and HuC/D were also performed with the whole mount preparations of myenteric plexus from the distal colon of vehicle- or loperamide-treated pigs to determine the alterations of total and cholinergic myenteric neurons.</p>
</sec>
<sec id="sec11">
<label>2.7.2.</label>
<title>hpChAT and ChAT (AB144p)</title>
<p>To verify the selectivity of hpChAT to label pig enteric cholinergic neurons and fibers, a double labeling was performed with hpChAT and a goat anti-human ChAT antibody (ChAT AB144p, Chemicon International, Temecula, CA). The latter is commonly used to label enteric cholinergic neurons (<xref ref-type="bibr" rid="ref29">Hao et al., 2013</xref>). The whole mount preparations of myenteric plexus from one na&#x00EF;ve male pig were incubated with a mixture of two first antibodies for 5&#x2009;days at 4&#x00B0;C followed by a mixture of secondary donkey anti-mouse Alexa Fluor<sup>&#x00AE;</sup> 488 and donkey anti-goat Alexa Fluor<sup>&#x00AE;</sup> 555 (<xref rid="tab1" ref-type="table">Table 1</xref>) for 1&#x2009;day at room temperature. Other steps were the same as described above.</p>
</sec>
<sec id="sec12">
<label>2.7.3.</label>
<title>hpChAT and cChAT</title>
<p>To distinguish and visualize simultaneously central and peripheral cholinergic innervation in the pig colon, double immunostaining with mouse antibody anti-hpChAT and a rabbit antibody against rat cChAT (<xref ref-type="bibr" rid="ref43">Kimura et al., 2007</xref>) was performed with three preparations: (i) CLARITY-cleared colonic muscular externa samples for 3D imaging, (ii) whole mount preparations for quantitative analysis and (iii) cryostat sections of cervical vagal nerve and sacral spinal cord to confirm the selectivity of hpChAT and cChAT antibodies. The procedures were the same as described above except that ChAT144p antibody and donkey anti-goat Alexa Fluor<sup>&#x00AE;</sup> 555 were replaced by cChAT antibody and donkey anti-rabbit Alexa Fluor<sup>&#x00AE;</sup> 555 (<xref rid="tab1" ref-type="table">Table 1</xref>). After double immunostaining, CLARITY-cleared samples were immersed for one day in a custom-made refractive index matching solution containing 88% Histodenz (Sigma-Aldrich) in 0.02&#x2009;M phosphate buffer with 0.01% sodium azide (Sigma-Aldrich) (pH 7.5) with a refractive index of 1.46 at 4&#x00B0;C. Then, samples were mounted with fresh refractive index matching solution in a sealed watertight well prepared with iSpacers (SunJin Lab, Hsinchu City, Taiwan) which are made from different thickness adhesive tapes. Whole mount preparations and sections were mounted onto Fisherbrand&#x2122; Superfrost&#x2122; Plus Microscope Slides (Fisher Scientific, Hampton, NH) with VECTASHIELD<sup>&#x00AE;</sup> antifade mounting medium (Vector Laboratories, Newark, CA). Negative control samples were also subjected to the same procedures without primary antibodies.</p>
</sec>
</sec>
<sec id="sec13">
<label>2.8.</label>
<title>3D imaging/digital tracing and quantification</title>
<p>Z-stack images were acquired from CLARITY-cleared samples and whole mount preparations with Zeiss LSM 710 confocal microscope (Carl Zeiss Microscopy, LLC, White Plains, NY). The Alexa Fluor<sup>&#x00AE;</sup> 405, 488 and 555 were excited using a 405&#x2009;nm violet laser, 488&#x2009;nm Argon laser and a 561&#x2013;10&#x2009;nm diode-pumped solid-state laser, respectively. The Z-axis intervals were 1&#x2009;&#x03BC;m with depths 35&#x2009;&#x03BC;m for the myenteric plexus in CLARITY-cleared samples, and 20&#x2009;&#x03BC;m for myenteric plexus and 45&#x2009;&#x03BC;m for inner and outer submucosal plexuses for whole mount preparations. The confocal parameters were determined, and the same setting was applied for each sample. The Z-stack images were collected using Zen image collection software (Carl Zeiss Microscopy) and processed for 3D reconstruction using Imaris 9.7 for Neuroscientists (Bitplane Inc., Concord, MA). The traditional procedure of counting nerve fibers manually <italic>via</italic> grid-based stereology and histomorphometry is both time consuming and labor intensive (<xref ref-type="bibr" rid="ref37">Hunter et al., 2020</xref>). We adapted the Imaris 9.7 Surfaces Rendering Technology<xref rid="fn0001" ref-type="fn"><sup>1</sup></xref> and developed a protocol for the density measurement of cholinergic innervation in 3D Images of the pig colon.<xref rid="fn0002" ref-type="fn"><sup>2</sup></xref> Briefly, the surfaces of cChAT immunoreactive (ir) nerve fibers, hpChAT-ir fibers + somata and ganglia containing neurons and fibers were created automatically with the ImarisSurface function. The setting of the parameters for ImarisSurface were surface grain size: 1.38&#x2009;&#x03BC;m, upper background subtraction threshold values: 1.28&#x2009;&#x03BC;m for green channel (hpChAT) and 1.42&#x2009;&#x03BC;m for red channel (cChAT), lower background subtraction threshold values: 0.96&#x2009;&#x03BC;m for green channel (hpChAT) and 1.10&#x2009;&#x03BC;m for red channel (cChAT). The volumes of these marked surfaces were automatically measured using the software Imaris 9.7. The densities of cChAT-ir nerve fibers or hpChAT-ir fibers plus somata were calculated and expressed as percentage of their volumes in ganglion volumes (v/v, %). HuC/D-ir myenteric neurons in the distal colon of pigs treated with loperamide or vehicle were counted automatically with ImarisSpot function in 6 ganglia/3D image. The density of HuC/D-ir neurons was calculated and expressed as the numbers per ganglion volumes (number/mm<sup>3</sup>). The 5&#x2013;6 3D images generated from each plexus in the three colon segments were used for the quantitative analysis. This approach allowed us to perform direct, objective and automatic measurements with less biases due to observer/examiner judgment. It was also faster than counting manually and enabled to quantify a large number of samples increasing the statistical accuracy. The quantitation in the distal colon of loperamide experiment was performed in a blind manner and the information on treatments (vehicle, low or high dose of loperamide) was withheld until after the quantitation was completed.</p>
<p>For the double labeling of hpChAT and HuC/D or hpChAT and ChAT (AB144p) with two pieces of whole mount preparations of proximal colonic myenteric plexus from one na&#x00EF;ve pig, neurons were manually counted in 5 ganglia of each preparation and the values were pooled together. The percentages of co-labeled neurons by hpChAT and HuC/D or hpChAT and ChAT (AB144p) in total HuC/D-ir or ChAT (AB144p)-ir neurons were calculated.</p>
</sec>
<sec id="sec14">
<label>2.9.</label>
<title>Statistical analysis</title>
<p>The statical analysis of the cholinergic innervation density between colonic segments and plexuses and HuC/D positive myenteric neurons in distal colonic segment of vehicle or loperamide treated pigs were performed with one-way analysis of variance (ANOVA) followed by Tukey&#x2019;s <italic>post hoc</italic> test. Sex differences were assessed by <italic>t</italic>- test. A <italic>p</italic> value &#x003C;0.05 was considered statistically significant.</p>
</sec>
</sec>
<sec sec-type="results" id="sec15">
<label>3.</label>
<title>Results</title>
<sec id="sec16">
<label>3.1.</label>
<title>hpChAT-ir neurons are co-labeled by anti- HuC/D or ChAT antibody (AB144p) in the myenteric plexus of proximal colon in a na&#x00EF;ve pig</title>
<p>The double immunolabeling of hpChAT (<xref rid="fig1" ref-type="fig">Figures 1A</xref>,<xref rid="fig1" ref-type="fig">D</xref>) and HuC/D (<xref rid="fig1" ref-type="fig">Figure 1B</xref>) in the myenteric plexus of the proximal colon using a sequential staining procedure showed that hpChAT-ir cells were fully co-labeled by HuC/D antibody, a marker used for the evaluation of neuronal populations. This demonstrates that cells labeled by hpChAT in the myenteric plexus are neurons (<xref rid="fig1" ref-type="fig">Figure 1C</xref>). Of HuC/D positive cells, 71% were hpChAT-ir while 29% were only labeled by HuC/D, indicating the feasibility of the sequential staining in the same preparation with hpChAT and HuC/D antibodies both raised from the mouse. The hpChAT immunostaining was visualized in the neuronal cell bodies and processes forming bundles separating the ganglia (<xref rid="fig1" ref-type="fig">Figures 1A</xref>,<xref rid="fig1" ref-type="fig">C</xref>). By contrast, the anti-HuC/D antibody uniformly labeled the cytoplasm and often also the nucleus of all neuronal cell bodies but not the neuronal processes (<xref rid="fig1" ref-type="fig">Figures 1B</xref>,<xref rid="fig1" ref-type="fig">C</xref>). No immunoreactivity was observed in preparations incubated with the antibody diluent alone instead of primary antibodies (data not shown).</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>hpChAT immunoreactive cells were co-labeled by HuC/D and ChAT (AB144p) in the myenteric plexus of proximal colon in a na&#x00EF;ve pig. Double immunostaining using a sequential staining procedure with antibodies against human peripheral choline acetyltransferase [hpChAT, green, <bold>(A,D)</bold>] and HuC/D, a marker for pan-neurons [blue, <bold>(B)</bold>] or ChAT (AB144p) [red, <bold>(E)</bold>], a well-recognized marker for cholinergic neurons showed the cholinergic neurons and fibers in the whole-mount preparations of the longitudinal muscle-myenteric plexus in the proximal colon of a na&#x00EF;ve male pig. <bold>(C,F)</bold> Merged images of <bold>A</bold> and <bold>B</bold>, <bold>D</bold> and <bold>E</bold>. In the upper panel, the blue arrows point to neurons labeled by HuC/D only. In the lower panel, white or green arrows point to neurons double-labeled by hpChAT and ChAT AB144p or single-labeled by hpChAT, respectively. Bar scale in each panel 50&#x2009;&#x03BC;m.</p>
</caption>
<graphic xlink:href="fnins-17-1204233-g001.tif"/>
</fig>
<p>The double labeling with the mouse anti-hpChAT antiserum (<xref rid="fig1" ref-type="fig">Figure 1D</xref>) and the goat anti-ChAT antibody (AB144p) (<xref rid="fig1" ref-type="fig">Figure 1E</xref>), a ChAT antibody commonly used to label enteric cholinergic neurons, showed that the immunoreactivity of hpChAT mostly overlapped (83%) with that of ChAT in the myenteric plexus of pig proximal colon (<xref rid="fig1" ref-type="fig">Figure 1F</xref>). Compared to ChAT (AB144p) (<xref rid="fig1" ref-type="fig">Figure 1E</xref>), hpChAT immunostaining (<xref rid="fig1" ref-type="fig">Figures 1A,D</xref>) provided a more intense, clearer and sharper neuronal profile, with more detailed structures and fine fibers with high resolution. No immunoreactivity was observed in the preparations incubated with the antibody diluent alone instead of primary antibodies (data not shown).</p>
</sec>
<sec id="sec17">
<label>3.2.</label>
<title>The central and peripheral cholinergic nerve fibers and neurons were distinctively labeled by cChAT and hpChAT, respectively, in the pig colon</title>
<p>The double labeling with a rabbit antibody against cChAT and the mouse antibody against hpChAT showed strong cChAT immunoreactivity in fibers of the pig cervical vagus nerve and no labeling in the perineurium (<xref rid="fig2" ref-type="fig">Figures 2A</xref>,<xref rid="fig2" ref-type="fig">C</xref>). The cChAT labeling was also observed in neuronal somata and fibers of the ventral horn in the pig sacral (S2) spinal cord (<xref rid="fig2" ref-type="fig">Figures 2D</xref>,<xref rid="fig2" ref-type="fig">F</xref>) while there was no hpChAT immunoreactivity visualized in these structures (<xref rid="fig2" ref-type="fig">Figures 2B</xref>,<xref rid="fig2" ref-type="fig">E</xref>). By contrast, in the pig proximal colonic myenteric plexus, intense hpChAT immunoreactivity was displayed in both neuronal somata and fibers (<xref rid="fig2" ref-type="fig">Figure 2H</xref>) while cChAT immunoreactivity was visualized in the fibers with varicose morphology but not in somata (<xref rid="fig2" ref-type="fig">Figure 2G</xref>). There were rare cChAT-ir fibers co-labeled with hpChAT-ir (<xref rid="fig2" ref-type="fig">Figure 2I</xref>).</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>hpChAT antibody only labeled the cholinergic nerve fibers and neurons in the colonic myenteric plexus while cChAT antibody labeled the cervical vagal nerves and sacral spinal cord neurons in a na&#x00EF;ve pig. Double immunostaining with antibodies against common type of choline acetyltransferase [cChAT, red, <bold>(A,D,G)</bold>] expressed preferentially in the central nervous system, and human peripheral choline acetyltransferase [hpChAT, green, <bold>(H,I)</bold>] showed the cChAT labeling of cholinergic neurons/fibers in the cervical vagal bundles <bold>(A,C)</bold>, spinal cord sacral S2 ventral horn <bold>(D,F)</bold> and in fibers of the whole-mount preparations of the longitudinal muscle-myenteric plexus of the proximal colon <bold>(G)</bold> while the hpChAT labeling only in the neurons and fibers in myenteric plexus <bold>(H,I)</bold> and not in the vagus or spinal cord <bold>(B,E)</bold> of a na&#x00EF;ve male pig. <bold>(C,F,I)</bold> Merged images of <bold>A</bold> and <bold>B</bold>, <bold>D</bold> and <bold>E</bold>, and <bold>G</bold> and <bold>H</bold>, respectively. No overlapping of cChAT and hpChAT was found in <bold>I</bold>. Bar scale in each panel 50&#x2009;&#x03BC;m.</p>
</caption>
<graphic xlink:href="fnins-17-1204233-g002.tif"/>
</fig>
</sec>
<sec id="sec18">
<label>3.3.</label>
<title>3D images displayed spatial configuration of central and peripheral cholinergic innervation in the pig colonic myenteric plexus</title>
<p>Using a modified CLARITY protocol developed for pig colon, we obtained a transparent hydrogel-muscularis externa hybridization without light-scattering lipids which allowed us to image deeply and acquire high quality confocal Z-stack images of myenteric plexus for 3D reconstruction. The 3D images exhibited a clear spatial view of the cholinergic nerve network in the myenteric plexus double labeled with hpChAT and cChAT antibodies. The peripheral cholinergic neurons (hpChAT-ir) were heterogeneous with multi-dendritic, bipolar or uni-axonal morphology and distributed in a single layer located between the longitudinal and circular muscle layers (<xref rid="fig3" ref-type="fig">Figure 3A</xref>). Each hpChAT-ir neuron sent a single axon and proceeded into the strands (<xref rid="fig3" ref-type="fig">Figure 3A</xref>). The central cholinergic fibers (cChAT-ir) were varicose and cChAT-ir neurons were rarely observed (<xref rid="fig3" ref-type="fig">Figure 3B</xref>). In the merged images, most nerve fibers were separately labeled by hpChAT and cChAT and only few co-labeled fibers were occasionally observed (<xref rid="fig3" ref-type="fig">Figure 3C</xref>). 3D images with highest magnifications showed that myenteric cholinergic neuronal cell bodies were closely surrounded by central cholinergic varicose fibers with dot-like structures (<xref rid="fig4" ref-type="fig">Figures 4A</xref>,<xref rid="fig4" ref-type="fig">B</xref>).</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption>
<p>The central and peripheral cholinergic nerve fibers and neurons were distinctly labeled by cChAT and hpChAT in the pig colonic myenteric plexus. Double immunostaining with antibodies against human peripheral form of choline acetyltransferase [hpChAT, green, <bold>(A)</bold>] and a common type of choline acetyltransferase expressed preferentially in the central nervous system [cChAT, red, <bold>(B)</bold>] showed central and peripheral cholinergic neurons/fibers in the whole-mount preparations of the longitudinal muscle-myenteric plexus in the porcine proximal colon. <bold>(C)</bold> Merged image of <bold>A</bold> and <bold>B</bold>. The green arrows point cholinergic fibers labeled by hpChAT antibody in <bold>A, C</bold> while not labeled by cChAT in <bold>B</bold>. The red arrows point to central cholinergic fibers with varicose morphology labeled with cChAT in <bold>B, C</bold> but not by hpChAT in <bold>A</bold>. Yellow arrows point to the fibers double-labeled by both hpChAT and cChAT which are thought to be peripheral myenteric due to the specificity of hpChAT for labeling exclusively peripheral cholinergic neurons/fibers. Bar scale in each panel 50&#x2009;&#x03BC;m.</p>
</caption>
<graphic xlink:href="fnins-17-1204233-g003.tif"/>
</fig>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption>
<p>3D Images displayed spatial configuration of central and peripheral cholinergic innervation in the pig colonic myenteric plexus. 3D images demonstrated the spatial configuration of central and peripheral cholinergic innervation in the myenteric plexus in the porcine proximal colonic muscularis externa generated with a modified CLARITY tissue clearing protocol developed in this study. <bold>(A)</bold> Peripheral cholinergic neurons and fibers were labeled with human peripheral choline acetyltransferase (hpChAT) antibody as green color, while central cholinergic innervation was labeled with common type of ChAT (cChAT) antibody as red color. Bar scale 50&#x2009;&#x03BC;m. <bold>(B)</bold> High magnification of the insert in A showing that hpChAT immunoreactive (ir) neurons are surrounded by cChAT-ir varicose fibers and dot like structures, presumably nerve terminals. Bar scale 20&#x2009;&#x03BC;m.</p>
</caption>
<graphic xlink:href="fnins-17-1204233-g004.tif"/>
</fig>
</sec>
<sec id="sec19">
<label>3.4.</label>
<title>Quantitative analysis showed distinct densities of central and peripheral cholinergic innervation within three enteric plexuses along the different segments of the pig colon</title>
<p>The 3D images generated from the whole mount preparations of the proximal, transverse and distal colon clearly showed that the inner submucosal plexus had no cChAT-ir fibers (<xref rid="fig5" ref-type="fig">Figures 5A</xref>&#x2013;<xref rid="fig5" ref-type="fig">C</xref>), while the outer submucosal plexus contains labeled fibers (<xref rid="fig5" ref-type="fig">Figures 5D</xref>&#x2013;<xref rid="fig5" ref-type="fig">F</xref>) and the myenteric plexus displayed varicose cChAT-ir fibers that were denser in the transverse (<xref rid="fig5" ref-type="fig">Figure 5H</xref>) and distal (<xref rid="fig5" ref-type="fig">Figure 5I</xref>) than proximal colon (<xref rid="fig5" ref-type="fig">Figure 5G</xref>). By contrast, hpChAT immunostaining showed similar density among the three segments and in each plexus (<xref rid="fig5" ref-type="fig">Figures 5A</xref>&#x2013;<xref rid="fig5" ref-type="fig">I</xref>). However, hpChAT-ir neurons displayed remarkable differences in the morphology (size, shape, processes) between the three plexuses. In the inner submucosal plexus, neurons in each ganglion are of a small size, uniform shape and dense (<xref rid="fig5" ref-type="fig">Figures 5A</xref>&#x2013;<xref rid="fig5" ref-type="fig">C</xref>). In the outer submucosal plexus, hpChAT-ir neurons exhibited various sizes and shapes and a less dense distribution (<xref rid="fig5" ref-type="fig">Figures 5D</xref>&#x2013;<xref rid="fig5" ref-type="fig">F</xref>) than those in the inner submucosal plexus (<xref rid="fig5" ref-type="fig">Figures 5A</xref>&#x2013;<xref rid="fig5" ref-type="fig">C</xref>). In the myenteric plexus, hpChAT-ir neurons were more heterogeneous (<xref rid="fig5" ref-type="fig">Figures 5G</xref>&#x2013;<xref rid="fig5" ref-type="fig">I</xref>) than in the outer submucosal plexus. In addition, a prominent difference was observed in the density and size of ganglia labeled by hpChAT among the three plexuses with small size but dense neuronal population in the inner submucosal plexus, less dense with a wider meshwork in the outer submucosal plexus and large size in the myenteric plexus under the low magnification (<xref rid="fig5" ref-type="fig">Figure 5</xref>).</p>
<fig position="float" id="fig5">
<label>Figure 5</label>
<caption>
<p>Regional differences of central and peripheral cholinergic innervation in the enteric nerve system of the pig colon. Double labeling of central and peripheral cholinergic innervation in the inner <bold>(A&#x2013;C)</bold> and outer submucosal plexus <bold>(D&#x2013;F)</bold> and myenteric plexus <bold>(G&#x2013;H)</bold> of the porcine proximal <bold>(A,D,G)</bold>, transverse <bold>(B,E,H)</bold> and distal colon <bold>(C,F,I)</bold> colon. Peripheral cholinergic neurons and fibers were labeled with hpChAT antibody as green color, while central cholinergic innervation was labeled with cChAT as red color. cChAT immunoreactive (ir) varicose fibers and dot like structures surround the hpChAT-ir neurons. cChAT-ir fibers were visualized in the outer submucosal and myenteric plexus where it was denser in the transverse and distal colon than in the proximal colon while there was no cChAT-ir fibers in the inner submucosal plexus. Similar density of hpChAT-ir neurons/fibers was displayed among three segments within each plexus. Bar scale in each panel 50&#x2009;&#x03BC;m.</p>
</caption>
<graphic xlink:href="fnins-17-1204233-g005.tif"/>
</fig>
<p>The hpChAT immunostaining showed strong intensity and high sensitivity providing sharpest neuronal profile with fine fibers at a high resolution allowing us to quantitate the density of both cholinergic neuronal cell bodies and fibers separately from cChAT fibers as illustrated in <xref rid="fig6" ref-type="fig">Figure 6</xref>. hpChAT-ir fibers + somata and cChAT-ir fibers in the inner (<xref rid="fig6" ref-type="fig">Figure 6A</xref>), outer (<xref rid="fig6" ref-type="fig">Figure 6F</xref>) submucosal plexuses and myenteric plexus (<xref rid="fig6" ref-type="fig">Figure 6K</xref>) were digitally traced using ImarisSurface Function (<xref rid="fig6" ref-type="fig">Figures 6B</xref>,<xref rid="fig6" ref-type="fig">G</xref>,<xref rid="fig6" ref-type="fig">L</xref>) and extracted from these images separately (<xref rid="fig6" ref-type="fig">Figures 6C</xref>,<xref rid="fig6" ref-type="fig">H</xref>,<xref rid="fig6" ref-type="fig">M</xref> and <xref rid="fig6" ref-type="fig">Figures 6D</xref>,<xref rid="fig6" ref-type="fig">I</xref>,<xref rid="fig6" ref-type="fig">N</xref>). The ganglia containing cholinergic neurons/fibers were surfaced-marked (<xref rid="fig6" ref-type="fig">Figures 6E</xref>,<xref rid="fig6" ref-type="fig">J</xref>,<xref rid="fig6" ref-type="fig">O</xref>). The volume of traced nerve fibers, neurons and ganglia were automatically measured with Imaris 9.7. Quantitative analysis of the density indicates that the inner submucosal plexus had no cChAT-ir fibers in all three segments (<xref rid="fig7" ref-type="fig">Figure 7A</xref>). In the outer submucosal plexus, the density of cChAT-ir fibers in the transverse and distal colon was significantly 4.1- and 6.8-fold higher, respectively, than in the proximal colon. In the myenteric plexus, the pattern of cChAT-ir fiber density showed a linear increase trend from the proximal to distal colon (<xref rid="fig7" ref-type="fig">Figure 7A</xref>). No significant difference was found in the high density of hpChAT-ir fibers + somata among the plexuses and segments (<xref rid="fig7" ref-type="fig">Figure 7B</xref>). The patterns of cChAT or hpChAT-ir density in the three ganglia and segments were similar between males and females (<xref rid="fig7" ref-type="fig">Figures 7C</xref>,<xref rid="fig7" ref-type="fig">D</xref>).</p>
<fig position="float" id="fig6">
<label>Figure 6</label>
<caption>
<p>cChAT immunoreactive (ir) fibers and hpChAT-ir fibers + somata were digitally traced with ImarisSurface function and the ganglia containing cholinergic neurons/fibers were delimited for computational quantitation with Imaris 9.7. 3D images with the volume X&#x2009;&#x00D7;&#x2009;Y&#x2009;&#x00D7;&#x2009;Z (axis)&#x2009;=&#x2009;708&#x2009;&#x00D7;&#x2009;708&#x2009;&#x00D7;&#x2009;20&#x2013;45 (&#x03BC;m<sup>3</sup>) were acquired from the whole-mount preparations of inner submucosal plexus, outer submucosal plexus and myenteric plexus in the porcine proximal colon. cChAT-ir fibers and hpChAT-ir fibers + somata in the inner submucosal plexus <bold>(A)</bold>, outer submucosal plexus <bold>(F)</bold> and myenteric plexus <bold>(K)</bold> were digitally traced with Imaris SurfaceFunction <bold>(B,G,L)</bold> respectively and extracted separately <bold>(C,H,M)</bold> and <bold>(D,I,N)</bold>. The ganglia containing cholinergic neurons/fibers were demarcated <bold>(E,J,O)</bold>. The volumes of traced nerve fibers and neurons and outlined ganglia were automatically measured with Imaris 9.7 for quantitation of densities of positive cChAT fibers and hpChAT fibers + somata. Bar scale in each panel 50&#x2009;&#x03BC;m.</p>
</caption>
<graphic xlink:href="fnins-17-1204233-g006.tif"/>
</fig>
<fig position="float" id="fig7">
<label>Figure 7</label>
<caption>
<p>Quantitative analysis showed distinct densities of central and peripheral cholinergic innervation within the three enteric plexuses along different segments of the pig colon. The quantitation was carried out in 5&#x2013;6 3D images with the volume X&#x2009;&#x00D7;&#x2009;Y&#x2009;&#x00D7;&#x2009;Z (axis)&#x2009;=&#x2009;708&#x2009;&#x00D7;&#x2009;708&#x2009;&#x00D7;&#x2009;20&#x2013;45 (&#x03BC;m<sup>3</sup>) acquired from the inner submucosal plexus, outer submucosal plexus and myenteric plexus of the proximal, transverse and distal colon (pC, dC, dC). The density of the cChAT immunoreactive (ir) fibers or hpChAT-ir fibers + somata was calculated and expressed as the percentages of their volumes in the delimited ganglion volume (v/v, %). In the upper panel <bold>(A, B)</bold>, each column represents the mean&#x2009;&#x00B1;&#x2009;SEM of 6 pigs (3 of each male and female pooled together). In the lower panel <bold>(C, D)</bold>, each column represents mean&#x2009;&#x00B1;&#x2009;SEM of 3 pigs (male and female separately). &#x002A;, &#x002A;&#x002A;, &#x002A;&#x002A;&#x002A;, <italic>p</italic>&#x2009;&#x003C;&#x2009;0.05, <italic>p</italic>&#x2009;&#x003C;&#x2009;0.01, &#x003C;0.001.</p>
</caption>
<graphic xlink:href="fnins-17-1204233-g007.tif"/>
</fig>
</sec>
<sec id="sec20">
<label>3.5.</label>
<title>Oral loperamide decreased the central and peripheral cholinergic innervation in the distal colonic myenteric plexus of pigs</title>
<p>The daily oral administration of loperamide at 3&#x2009;mg/kg for 4&#x2009;weeks induced a decrease of cChAT-ir varicose fibers and hpChAT-ir fibers + somata in both males (<xref rid="fig8" ref-type="fig">Figures 8A</xref>&#x2013;<xref rid="fig8" ref-type="fig">C</xref>) and females (<xref rid="fig8" ref-type="fig">Figures 8D</xref>&#x2013;<xref rid="fig8" ref-type="fig">F</xref>) as displayed in the 3D images of whole mount preparation in the distal colonic myenteric plexus compared to vehicle. Quantitative analysis of myenteric plexus from males and females pooled together showed that loperamide (3&#x2009;mg/kg) reduced the density of hpChAT-ir fibers + somata by 63% compared to vehicle group while loperamide at 0.4&#x2009;mg/kg for 4&#x2009;weeks had no effect (<xref rid="fig9" ref-type="fig">Figure 9B</xref>). The numbers of HuC/D labeled neurons in the myenteric plexus of the distal colon did not show significant differences among three groups (vehicle: 51337&#x2009;&#x00B1;&#x2009;7,344, loperamide, 0.4&#x2009;mg/kg/day: 44254&#x2009;&#x00B1;&#x2009;3,485, 3&#x2009;mg/kg/day: 38916&#x2009;&#x00B1;&#x2009;467, mean&#x2009;&#x00B1;&#x2009;SEM HuC/D-ir neurons/mm<sup>3</sup> volume of ganglion, <italic>n</italic> =&#x2009;4/group, <italic>p</italic> =&#x2009;0.313).</p>
<fig position="float" id="fig8">
<label>Figure 8</label>
<caption>
<p>Double immunostaining of cChAT and hpChAT showed that oral loperamide (3&#x2009;mg/kg/day, 4&#x2009;weeks) decreased the central and peripheral cholinergic innervation in the distal colonic myenteric plexus of pigs. Double immunostaining with antibodies against a common type of choline acetyltransferase (cChAT, red) expressed preferentially in the central nervous system and a human peripheral form of choline acetyltransferase (hpChAT, green) was performed in the whole-mount preparations of the longitudinal muscle-myenteric plexus of the distal colon collected from pigs orally administrated for four weeks with vehicle control <bold>(A,D)</bold>, loperamide at 0.4&#x2009;mg/kg/day <bold>(B,E)</bold> and 3&#x2009;mg/kg/day <bold>(C,F)</bold>. <bold>A&#x2013;C</bold>: male. <bold>D&#x2013;F</bold>: female. Bar scale in each panel 50&#x2009;&#x03BC;m.</p>
</caption>
<graphic xlink:href="fnins-17-1204233-g008.tif"/>
</fig>
<fig position="float" id="fig9">
<label>Figure 9</label>
<caption>
<p>Computational quantitation with Imaris 9.7 showed that oral loperamide (3&#x2009;mg/kg/day, 4&#x2009;weeks) resulted in significant decrease of the peripheral cholinergic innervation in the distal colonic myenteric plexus of pigs. The central and peripheral cholinergic innervation were labeled with marker antibodies against common choline acetyltransferase (cChAT) and human peripheral form of ChAT (hpChAT) respectively in whole mount preparation of the distal colonic longitudinal muscle-myenteric plexus of pigs orally administrated for four weeks with vehicle controls and loperamide (0.4&#x2009;mg and 3&#x2009;mg/kg/day). Computational quantitation was performed with 6 of 3D images with the volume X&#x2009;&#x00D7;&#x2009;Y&#x2009;&#x00D7;&#x2009;Z (axis)&#x2009;=&#x2009;708&#x2009;&#x00D7;&#x2009;708&#x2009;&#x00D7;&#x2009;20 (&#x03BC;m<sup>3</sup>)/image/animal. The cChAT immunoreactive (ir) fibers or hpChAT-ir fibers + somata were digitally traced with ImarisSurface functions. The densities of the cChAT-ir fibers <bold>(A)</bold> or hpChAT-ir fibers + somata <bold>(B)</bold> were calculated and expressed as the percentages of their volumes in the delimited ganglion volume (v/v, &#x03BC;m<sup>3</sup>/&#x03BC;m<sup>3</sup>, %). Each column represents mean&#x2009;&#x00B1;&#x2009;SEM of 4 pigs (2 of each male and female pooled together). &#x002A;&#x002A;<italic>p</italic>&#x2009;&#x003C;&#x2009;0.01 vs. control; <sup>#</sup><italic>p</italic>&#x2009;&#x003C;&#x2009;0.05 vs. low dose loperamide.</p>
</caption>
<graphic xlink:href="fnins-17-1204233-g009.tif"/>
</fig>
<p>cChAT-ir fibers in the pig distal colon showed a trend to have a dose-related decrease in their density induced by loperamide treatment which did not reach significance (<italic>p</italic> =&#x2009;0.286) compared to the control group given vehicle (<xref rid="fig9" ref-type="fig">Figure 9A</xref>). The statical analysis of sex difference cannot be performed due to the small number of animals per sex (2 pigs/sex).</p>
</sec>
</sec>
<sec sec-type="discussions" id="sec21">
<label>4.</label>
<title>Discussion</title>
<p>The present study distinguished the central and peripheral cholinergic innervation of the colon and unraveled their spatial configuration in 3D images in the pig, a relevant translational model (<xref ref-type="bibr" rid="ref57">Miller and Ullrey, 1987</xref>; <xref ref-type="bibr" rid="ref39">Kararli, 1995</xref>; <xref ref-type="bibr" rid="ref64">Patterson et al., 2008</xref>; <xref ref-type="bibr" rid="ref26">Gonzalez et al., 2015</xref>). The quantitative analysis showed segmental differences among the inner and outer submucosal and myenteric plexuses in the central but not peripheral cholinergic innervation. The study also demonstrated that the chronic administration of loperamide, a preferential &#x03BC;-opioid receptor agonist (<xref ref-type="bibr" rid="ref15">DeHaven-Hudkins et al., 1999</xref>) decreased the peripheral myenteric cholinergic innervation of the distal colon. These findings were achieved by developing a set of novel approaches enabling to differentiate immunohistochemically the central cholinergic fibers from the peripheral cholinergic fibers plus somata in the enteric nervous system, to visualize their architecture and topography in 3D images of the intact muscularis externa generated with CLARITY tissue clearing technique and computationally quantifying the cholinergic densities in 3D images with Imaris 9.7 for Neuroscientists.</p>
<sec id="sec22">
<label>4.1.</label>
<title>Validity of double immunolabeling of cChAT and hpChAT to distinguish central and peripheral cholinergic innervation in the pig colon enteric nervous system</title>
<p>The immunohistochemistry with antibody against choline acetyltransferase, an acetylcholine synthesizing enzyme, has been widely used to visualize cholinergic cell bodies and fibers in the central nervous system, however, it gave imprecise and faint staining of cholinergic cells and fibers in peripheral tissues (<xref ref-type="bibr" rid="ref44">Kimura et al., 1980</xref>, <xref ref-type="bibr" rid="ref43">2007</xref>; <xref ref-type="bibr" rid="ref17">Eckenstein et al., 1981</xref>; <xref ref-type="bibr" rid="ref49">Levey et al., 1981</xref>; <xref ref-type="bibr" rid="ref700">Anglade and Larabi-Godinot, 2010</xref>). A leap forward occurred with the identification of a ChAT mRNA splice variant in the rat peripheral nervous system lacking exons 6&#x2013;9 in the coding region named rat peripheral form of ChAT (rpChAT) (<xref ref-type="bibr" rid="ref76">Tooyama and Kimura, 2000</xref>; <xref ref-type="bibr" rid="ref43">Kimura et al., 2007</xref>). rpChAT immunohistochemistry was useful to investigate the cholinergic enteric nervous system in rats (<xref ref-type="bibr" rid="ref61">Nakajima et al., 2000</xref>; <xref ref-type="bibr" rid="ref83">Yuan et al., 2005</xref>). Recently, we have successfully developed a novel mouse antiserum against the predicted human hpChAT using 14-amino acid sequence extending both wings before and after the junction of exons 5 and 10 of hpChAT protein (<xref ref-type="bibr" rid="ref4">Bellier et al., 2019</xref>). The immunohistochemistry of hpChAT showed intense staining in many neuronal cells and fibers of human colon but not in human brain (<xref ref-type="bibr" rid="ref4">Bellier et al., 2019</xref>). In the present study, we found that hpChAT-ir cells were fully co-labeled by the pan-neuronal marker HuC/D (<xref ref-type="bibr" rid="ref52">Lin et al., 2002</xref>) in the pig colonic myenteric plexus. In addition, all neurons labeled by ChAT (AB144p), a ChAT antibody generated with antigen against human placental ChAT and commonly used to label enteric cholinergic neurons (<xref ref-type="bibr" rid="ref38">Jiang et al., 2017</xref>; <xref ref-type="bibr" rid="ref50">Li et al., 2019</xref>), were also co-labeled by hpChAT. Importantly, the hpChAT exhibited strong intensity and high sensitivity with a dilution up to 1:2,000&#x2013;4,000 vs. 1:100&#x2013;500 for the ChAT AB144p and provided sharp neuronal profile with the visualization of fine fibers at a high resolution in the pig myenteric ganglia. Further characterization of cChAT antibody, a central cholinergic marker in the rat brain (<xref ref-type="bibr" rid="ref43">Kimura et al., 2007</xref>) and hpChAT antibodies using double labeling showed that cChAT labeled cholinergic neurons and fibers in the pig central nervous system structures without cross-reaction with hpChAT. This is demonstrated by the strong cChAT immunoreactivity in the fibers of the cervical vagal fascicles while the perineurium composed of fibrillar and microfibrillar collagens and fibronectin had no labeling. The cChAT antibody also labeled neuronal somata and fibers in the ventral horn of the pig sacral spinal cord while there was not hpChAT immunoreactivity visualized in these central nervous system structures. By contrast, in the whole mount preparation of pig colon myenteric plexus, there was dense hpChAT immunoreactivity in neurons and fibers, while cChAT immunohistochemistry was visualized only in the fibers with varicose morphology and dot-like structures but not in the somata. The few co-labeled fibers occasionally observed may represent peripheral cholinergic fibers considering the specificity of hpChAT to label exclusively the peripheral cholinergic system. However, it cannot be excluded that cChAT, a common type of ChAT in rats may have a weak cross-reaction with hpChAT in pig enteric nervous system. Collectively, these data ascertain the validity and selectivity of the double labeling with cChAT and hpChAT antibodies to distinguish central cholinergic axons and terminals from peripheral cholinergic neurons and fibers in the pig colon.</p>
</sec>
<sec id="sec23">
<label>4.2.</label>
<title>Spatial configuration of the two classes of cholinergic innervation and quantitative mapping of their distributions within the three layers of enteric plexuses along with the different segments of the pig colon</title>
<p>The central nerve fibers and peripheral neurons and fibers in the enteric nervous system form a 3D network which cannot be easily portrayed with 2D images acquired from tissue sections (<xref ref-type="bibr" rid="ref22">Furness et al., 2014</xref>). However, the 3D imaging of the pig colon innervation faces challenges due to the thickness and opacity of colonic wall which restrict large volumes imaging with microscopic resolution (<xref ref-type="bibr" rid="ref77">Tuchin et al., 1997</xref>; <xref ref-type="bibr" rid="ref71">Tainaka et al., 2014</xref>). By developing a modified CLARITY protocol for the whole thickness of human colon combined with hpChAT immunohistochemistry, we previously demonstrated successfully the peripheral cholinergic innervation in 3D structure of the human sigmoid colon (<xref ref-type="bibr" rid="ref82">Yuan et al., 2021a</xref>). In the present study, we further optimized the CLARITY protocol to speed up the tissue clearing by removing the mucosa, submucosa and serosa from the full thickness of the pig proximal colon and trimmed the muscularis externa into a small volume (1&#x2009;&#x00D7;&#x2009;1&#x2009;&#x00D7;&#x2009;0.2&#x2009;cm) after fixation with 4% paraformaldehyde alone. These steps cut down by over a half the clearing time required in our original protocol (<xref ref-type="bibr" rid="ref82">Yuan et al., 2021a</xref>). The smaller volume also resulted in less light scattering and clearer imaging allowing us to show myenteric cholinergic neurons (hpChAT labeled) in ganglia closely surrounded by central cholinergic (cChAT-ir) varicose fibers with dot like structures, nerve terminals in the pig proximal colon. These findings provide neuroanatomical evidence that central efferent cholinergic fibers target myenteric neurons in the pig colon. This is consistent with the report showing that in the guinea pig distal colon, most of the effects of parasympathetic input are mediated via enteric neuronal circuits, particularly myenteric neurons which are the major recipient of central fibers involved in gut motility rather than direct input to effector cells (<xref ref-type="bibr" rid="ref12">Chen et al., 2015</xref>).</p>
<p>The development of an approach to computationally quantitate the density of cChAT-ir fibers and hpChAT-ir fibers and somata in 3D images of the whole mount enteric preparation had the advantage to distinguish two classes of cholinergic fibers and hpChAT-ir whole cell bodies and processes without the loss of fibers as occurring in 2D. With regards to the inner submucosal plexus, the quantitative analysis indicated that there is no cChAT-ir fibers in the proximal, transverse and distal colon while there was a high density of hpChAT-ir somata and fibers similar in these three segments. The inner submucosal plexus was localized in the submucosa close to the lamina muscularis mucosae, and not in the mucosa, therefore it is unlikely that the removal of mucosa damaged the visualization of cChAT fibers. In addition, under these conditions, we found extrinsic sympathetic nerve fibers labeled by tyrosine hydroxylase in the pig inner submucosal plexus (Yuan et al., unpublished observations). These findings provide evidence that the cholinergic innervation in the inner submucosal plexus of the pig colon arise from the peripheral cholinergic system with no direct input from the central cholinergic fibers. By contrast, the outer submucosal plexus is innervated by cChAT fibers pointing to this submucosal plexus as the recipient of central cholinergic input. The mucosa is primarily controlled by submucosal ganglia with cholinergic neurons being secretomotor (<xref ref-type="bibr" rid="ref21">Furness, 2008</xref>). We previously reported that central parasympathetic stimulation of the colon by corticotropin releasing factor injected into the 4th ventricle induced diarrhea in rats which was correlated with a greater number of activated submucosal neurons in the distal compared in the proximal colon (<xref ref-type="bibr" rid="ref84">Yuan et al., 2021b</xref>). These functional data may have a bearing with the 3.7-fold higher (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05) density of cChAT found in the outer submucosal plexus of the distal than proximal colon. In the myenteric plexus, the density of cChAT was significantly higher than in the outer submucosal plexus in each segment and showed a linear increase from the proximal to distal colon being 1.6-fold higher in the distal than the proximal colon (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05). Central cholinergic fibers in the myenteric plexus are consistent with the importance of central parasympathetic innervation in the control of expulsion while in the proximal colon is specialized for the retention and mixing of luminal contents (<xref ref-type="bibr" rid="ref65">Petto et al., 2015</xref>). By contrast, the peripheral cholinergic innervation (hpChAT positive fibers + somata) was dense and had no significant differences among the plexuses and segments.</p>
<p>It is to note that the results related to the density of central and peripheral cholinergic innervation in the pig colonic segments have some limitations. First, we could not differentiate whether hpChAT-ir fibers in the distal colon are only of intrinsic enteric origins. While cholinergic nerve cell bodies in sacral segments of the spinal cord project directly to the distal colon, many of these axons also synapse onto nerve cell bodies located within the extrinsic inferior hypogastric ganglia which in turn project to the distal colon (<xref ref-type="bibr" rid="ref19">Fukai and Fukuda, 1985</xref>; <xref ref-type="bibr" rid="ref40">Keast and de Groat, 1989</xref>; <xref ref-type="bibr" rid="ref62">Olsson et al., 2006</xref>). Moreover, within the inferior hypogastric ganglia, preganglionic sympathetic fibers are thought to synapse onto postganglionic cholinergic fibers (<xref ref-type="bibr" rid="ref53">Luckensmeyer and Keast, 1995</xref>; <xref ref-type="bibr" rid="ref62">Olsson et al., 2006</xref>), allowing pathways for sympathetic-cholinergic input to the colon. Previous studies indicated that rpChAT-immunoreactivity can be detected in peripheral cholinergic postganglionic neurons (<xref ref-type="bibr" rid="ref3">Bellier and Kimura, 2011</xref>; <xref ref-type="bibr" rid="ref45">Koga et al., 2013</xref>). Whether hpChAT immunoreactivity can be identified in neurons of the pig inferior hypogastric ganglia projecting to the distal colon needs to be assessed to ascertain that the hpChAT fibers are solely of intramural origin. Second, the enteric hpChAT cholinergic innervation in the proximal and transverse colon reflects only the area between the two taeniae where the colon wall is covered with a relatively thin layer of longitudinal muscle and easier to perform the CLARITY and whole mount preparation. In human colon whole mount preparation, a report indicated that the myenteric plexus is 50% denser and 30% wider in areas underneath the tenia than those between the tenia coli, however, the density and size of the dihydronicotinamide adenine dinucleotide phosphate diaphorase (NADPH-d) positive neurons were similar between underneath and between the taeniae (<xref ref-type="bibr" rid="ref28">Hanani et al., 2012</xref>). Whether similar observations applied to the pig colonic myenteric plexus underneath the tenia remained to be established. Likewise, the cChAT cholinergic innervation might be denser at the point of entrance of nerves presumably near the tenia mesocolica, however this information is lacking in the pig colon and could not be assessed. Lastly the absence of sex difference in the central and peripheral cholinergic innervation should be put in the context that male pigs have been castrated early on at postnatal day 7.</p>
<p>The ganglia labeled with hpChAT antibody showed marked differences in the morphology and density among the three plexuses with small but of high density in the inner submucosal plexus, sparse with a wider meshwork in the outer submucosal plexus and heterogeneous and dense in the myenteric plexus. These findings agree with a report in pig colonic enteric ganglia labeled with HuC/D antibody (<xref ref-type="bibr" rid="ref65">Petto et al., 2015</xref>). This reflects different types of cholinergic neurons located in the myenteric ganglia including excitatory motor neurons, ascending and descending interneurons, intrinsic primary afferent, intestinal fugal neurons and secretomotor neurons (<xref ref-type="bibr" rid="ref20">Furness, 2000</xref>; <xref ref-type="bibr" rid="ref36">Humenick et al., 2021</xref>; <xref ref-type="bibr" rid="ref68">Sharkey and Mawe, 2023</xref>).</p>
</sec>
<sec id="sec24">
<label>4.3.</label>
<title>Loperamide reduced the cholinergic innervation of the pig colon myenteric plexus</title>
<p>Repeated peripheral administration of loperamide at the doses of 4&#x2013;5&#x2009;mg/kg body weight is widely used to induce constipation in healthy rodents (<xref ref-type="bibr" rid="ref42">Kim et al., 2019a</xref>,<xref ref-type="bibr" rid="ref41">b</xref>; <xref ref-type="bibr" rid="ref55">Ma et al., 2021</xref>; <xref ref-type="bibr" rid="ref79">Wang et al., 2023</xref>). Recently, we developed a loperamide model of constipation in healthy pigs using the oral dose of 3&#x2009;mg/kg/day for four weeks. This regimen results in altered colonic motility patterns and decreased gastrointestinal transit and fecal water content with no direct signs of intolerance or toxicity (<xref ref-type="bibr" rid="ref47">Larauche et al., 2022</xref>). In the present study, a similar administration of loperamide reduced by 63% the density of peripheral cholinergic innervation (hpChAT-ir neurons and fibers) in the pig distal colon myenteric plexus. By contrast, there was no significant changes in the extrinsic cholinergic density (cChAT-ir fibers). These findings are in keeping with the established peripheral action of loperamide which does not cross the blood brain barrier (<xref ref-type="bibr" rid="ref15">DeHaven-Hudkins et al., 1999</xref>; <xref ref-type="bibr" rid="ref1">Baker, 2007</xref>). The reduction of the density of hpChAT-ir neurons and fibers is likely to due to the decrease in peripheral cholinergic innervation as the number of HuC/D labeled myenteric neurons was not significantly changed. Such findings provide anatomical support underpinning the alterations of cholinergic transmission previously reported after loperamide treatment-induced constipation (<xref ref-type="bibr" rid="ref42">Kim et al., 2019a</xref>,<xref ref-type="bibr" rid="ref41">b</xref>; <xref ref-type="bibr" rid="ref79">Wang et al., 2023</xref>). In na&#x00EF;ve rats, loperamide reduced acetylcholine esterase activity and the expression of muscarinic cholinergic M2 and M3 receptors in the colon (<xref ref-type="bibr" rid="ref42">Kim et al., 2019a</xref>,<xref ref-type="bibr" rid="ref41">b</xref>) and in mice, the level of acetylcholine in the colonic tissue was decreased after repeated loperamide-induced functional constipation (<xref ref-type="bibr" rid="ref79">Wang et al., 2023</xref>). Likewise, in healthy isolated tenia coli muscle, loperamide decreased the release of acetylcholine produced by electrical field stimulation (<xref ref-type="bibr" rid="ref10">Burleigh, 1988</xref>). A recent report using human inter-tenia circular muscle strips also indicates that loperamide had no direct effect on neuromuscular function supporting an action primarily on enteric neurons (<xref ref-type="bibr" rid="ref31">Heitmann et al., 2022</xref>). In the clinical setting, loperamide is used for the treatment of acute diarrhea at the therapeutic doses of 2&#x2013;4&#x2009;mg/subject (<xref ref-type="bibr" rid="ref78">Vearrier and Grundmann, 2021</xref>). Such a dosage bears similarity with the 0.4&#x2009;mg/kg/day of loperamide tested in our study that did not change the myenteric cholinergic innervation of the distal colon in healthy pigs. However, under conditions of abuse, intake frequently reaches more than 200&#x2009;mg/day (<xref ref-type="bibr" rid="ref78">Vearrier and Grundmann, 2021</xref>) resulting in constipation and bowel dysfunction (<xref ref-type="bibr" rid="ref16">Dorn et al., 2014</xref>; <xref ref-type="bibr" rid="ref48">Laroche et al., 2017</xref>) becoming a growing concern in the management of opioid side effects (<xref ref-type="bibr" rid="ref18">Farmer et al., 2019</xref>).</p>
<p>In conclusion, this study validates the use of two specific cChAT and hpChAT antibodies to map the cholinergic innervation of the inner and outer submucosal and myenteric plexuses in the three segments of pig colon and to simultaneously differentiate the central (cChAT) from peripheral (hpChAT) cholinergic innervation. The 3D images generated from CLARITY-cleared pig colonic tissue samples demonstrate that some cChAT-ir varicose fibers are surrounding hpChAT-ir myenteric neurons with dot like structures supporting central and myenteric cholinergic interactions while the inner submucosal plexus did not receive direct central cholinergic input throughout the pig colon. Quantitative analysis reveals that chronic oral treatment with the peripheral mu opioid agonist, loperamide, results in a significant decrease in the peripheral but not central myenteric cholinergic innervation of the distal colon which may play a role in the development of opioid-induced constipation. These data provide a morphological basis for the evaluation of cholinergic alterations of the enteric nervous system associated with functional colonic disorders (<xref ref-type="bibr" rid="ref34">Holland et al., 2021</xref>).</p>
</sec>
</sec>
<sec sec-type="data-availability" id="sec25">
<title>Data availability statement</title>
<p>The authors confirm that the data supporting the findings of this study are available within the article. A dataset of characterizing of 30 antibodies (including those used in this study) in immunostaining with whole mount preparations of enteric plexus, CLARITY cleared intact samples and/or cryostat sections of pig colon was published in the Pennsieve.io (DOI: <ext-link xlink:href="https://sparc.science/datasets/216/version/1" ext-link-type="uri">10.26275/of13-iokw</ext-link>). A protocol describing a step-by-step computational workflow for the density measurement of cholinergic innervation in three-dimensional (3D) images of the pig colonic enteric nervous system (ENS) with Imaris 9.7 for neuroscientists was published in the protocols.io (<ext-link xlink:href="https://www.protocols.io/view/a-protocol-of-density-measurement-of-cholinergic-i-q26g7pry9gwz/v1" ext-link-type="uri">dx.doi.org/10.17504/protocols.io.q26g7pry9gwz/v1</ext-link>).</p>
</sec>
<sec id="sec26">
<title>Ethics statement</title>
<p>The animal studies were approved by University of California at Los Angeles (UCLA) Institutional Animal Care and Use Committee, Chancellor&#x2019;s Animal Research Committee (ARC) (approval protocol 2018-074-01). The studies were conducted in accordance with the local legislation and institutional requirements. Written informed consent was not obtained from the owners for the participation of their animals in this study because the pigs were purchased from S&#x0026;S Farms (Farms, Ramona, CA).</p>
</sec>
<sec id="sec27">
<title>Author contributions</title>
<p>P-QY and YT: design the study and draft the manuscript. P-QY, TL, MM, ML, and KA performed the experiments. P-QY and TL: data acquisition and interpretation. MM and J-PB: give input on the written manuscript. All authors listed provide final approval for publication.</p>
</sec>
<sec sec-type="funding-information" id="sec28">
<title>Funding</title>
<p>This research was supported by the NIH SPARC OT2 grant OD024899 (P-QY, YT, and MM), NIHDDK Grant P30-DK-41301 (YT), U01NS113871 (MM, P-QY, ML, and KA), Veteran Administration Research Career Scientist Award (YT).</p>
</sec>
<sec sec-type="COI-statement" id="sec29">
<title>Conflict of interest</title>
<p>J-PB has a registered Japanese patent (7176724). Antibody for detecting human peripheral cholinergic nerve (2022).</p>
<p>The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec100" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack>
<p>We thank Hiroshi Kimura for the generous supply of the cChAT antibody and Honghui Liang for her excellent technical assistance.</p>
</ack>
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