Obesity is a global health threat with increased risk for various chronic conditions including diabetes and cardiovascular diseases (Williams et al., 2015; Gonzalez-Muniesa et al., 2017). Although lifestyle changes have driven its prevalence to epidemic proportions, genetic factors play an important role in influencing which individuals within a population are more likely to develop obesity in response to a particular environment (Elks et al., 2012; van der Klaauw and Farooqi, 2015; Gonzalez-Muniesa et al., 2017). In the last few decades, tremendous efforts have been made to identify genetic factors involved in obesity. Among genetic variations in the human genome, single-nucleotide polymorphisms (SNPs) in the first intron of the Fat mass and obesity-associated gene (FTO) were identified to be most highly associated with obesity risk (Dina et al., 2007; Frayling et al., 2007; Cecil et al., 2008; Speakman et al., 2008; Tanofsky-Kraff et al., 2009). Recent studies further demonstrated that two homeobox genes, IRX3 and IRX5, in the vicinity of FTO directly mediate the effects of obesity-risk variants of FTO on body mass and composition regulation (Smemo et al., 2014; Claussnitzer et al., 2015; Laber et al., 2021; Sobreira et al., 2021).

The hypothalamus is a central regulatory hub for many physiological processes including energy homeostasis. Especially, the hypothalamic arcuate-median eminence (ARC-ME) is involved in the sensing of various signals such as the satiety hormone leptin (Dietrich and Horvath, 2013; Timper and Bruning, 2017; Friedman, 2019; Myers et al., 2021). It contains major classes of leptin-sensing neurons including those expressing orexigenic agouti-related peptide (AgRP) and anorexigenic pro-opiomelanocortin (POMC), radial glia-like cells (RGLs) (tanycytes, ependymocytes and neural stem cells) as well as NG2⁺ oligodendrocyte precursor cells (OPCs) (Dietrich and Horvath, 2013; Campbell et al., 2017; Rizzoti and Lovell-Badge, 2017; Timper and Bruning, 2017). Irx3 and Irx5 are expressed in multiple cell types of the ARC-ME, predominantly in a newly identified radial glia-like neural stem cell (RGL-NSC) population in the postnatal mouse hypothalamus (Smemo et al., 2014; Campbell et al., 2017; Son et al., 2021a). They are implicated in the regulation of energy homeostasis, particularly feeding regulation, and postnatal hypothalamic neurogenesis (Son et al., 2021a). The role of IRX3 and IRX5 in the regulation of energy homeostasis and development has been previously discussed in other reviews (Cavodeassi et al., 2001; Gomez-Skarmeta and Modolell, 2002; Kim et al., 2012; Tung et al., 2014; Herman and Rosen, 2015; de Araujo and Velloso, 2020). In this review, we aim to provide an update integrating our knowledge of their new functions in hypothalamic neurogenesis and discuss the intricacies and challenges in understanding their molecular actions.

Iroquois homeobox (Irx) genes encode a family of highly conserved TALE homeodomain-containing transcription factors (TFs). Iroquois genes were first discovered in the fruit fly Drosophila melanogaster. Mutations of these genes suppress bristle formation on the lateral notum, leaving only a wide band of bristles in the central part of the notum, reminiscent of the hairstyle of the Iroquois American Indians “Mohawk” - hence the name of the locus (Gomez-Skarmeta and Modolell, 1996; Gomez-Skarmeta et al., 1996; Leyns et al., 1996). Mammals have 6 Irx genes clustered in two 3-gene groups; the IrxA cluster on mouse chromosome 13 (human chromosome 5) consists of Irx1, Irx2, and Irx4, and the IrxB cluster on mouse chromosome 8 (human chromosome 16) contains Irx3, Irx5, and Irx6 (Peters et al., 2000; Cavodeassi et al., 2001; Kim et al., 2012). Among them, Irx3 and Irx5 of the IrxB cluster are involved in the development of many mammalian tissues including the heart, bone, limb bud, eye and ovary, with regulatory functions in embryonic patterning and specification as well as in tissue differentiation and specialization (Cheng et al., 2005; Costantini et al., 2005; Zhang et al., 2011; Gaborit et al., 2012; Kim et al., 2012; Li et al., 2014; Kim et al., 2016; Fu et al., 2018; Tan et al., 2020; Tao et al., 2020). Irx3 and Irx5 share similar expression patterns during embryonic development and their double mutant mice show more severe phenotypes than single mutants, suggesting that they possess overlapping function and act redundantly.

Besides their developmental functions, IRX3 and IRX5 have been highlighted as determinants of human obesity in connection with the intronic obesity risk variants of FTO, a gene in the vicinity of the IRXB cluster. Non-coding variations represented by SNPs in the first intron of FTO are the strongest genetic risk factors of polygenic obesity in humans (Dina et al., 2007; Frayling et al., 2007; Cecil et al., 2008; Speakman et al., 2008; Tanofsky-Kraff et al., 2009). Previous studies using chromatin conformation capture techniques (3C, 4C and Hi-C) have demonstrated that a genomic region including the intronic FTO SNPs directly loops into the promoter region of the neighboring IRX3 and IRX5, ∼ a half megabase downstream of FTO, in multiple tissues including adipose tissue and brain in humans (Figure 1A; Smemo et al., 2014; Claussnitzer et al., 2015; Sobreira et al., 2021). Furthermore, expression quantitative trait loci (eQTL) analysis revealed significantly higher expression levels of IRX3 and IRX5 in human brain, human hypothalamic arcuate-like neurons derived from human induced pluripotent stem cells (hiPSCs) and human adipocyte progenitor cells from risk-allele carriers, compared to non-risk allele carriers, whereas risk and non-risk carriers did not show significant difference of FTO expression (Figure 1A). Gene editing experiments in human adipocytes showed that an obesity-risk intronic variant of FTO results in higher expression of both IRX3 and IRX5 specifically in adipocyte progenitor cells (Claussnitzer et al., 2015), and deletion of a cis-regulatory module (CRM) harboring the FTO risk variant in mice results in lower Irx3 and Irx5 gene expression in adipocyte progenitors to roughly 70% of control levels (Laber et al., 2021). Furthermore, ∼20k-bp deletion spanning the orthologous obesity-associated interval of Fto in mice leads to down-regulation of both Irx3 and Irx5 in preadipocytes and developing hypothalamus (Sobreira et al., 2021). Collectively, these studies suggest that obesity-associated variants of FTO regulate the expression of IRX3 and IRX5 in the hypothalamus and adipose tissue contributing to metabolic changes.

Studies of genetic mouse models have demonstrated that Irx3 and Irx5 are both involved in metabolic regulation. Although there are differences in the metabolic phenotypes depending on the models, Irx3- and Irx5-deficient mice are generally lean and display an anti-obesity phenotype with elevated energy expenditure due to adipose beiging (i.e., enhanced adipose thermogenesis) compared to wild-type controls (summarized in Table 1). Specifically, Irx3 knockout (Irx3^tLz/tLz) and Irx5 knockout (Irx5^eGFP/eGFP) mice generated by our group both exhibited lower body weight and fat composition (Smemo et al., 2014; Bjune et al., 2018), whereas their heterozygous counterparts Irx3^tLZ/+ and Irx5^eGFP/+ mice did not exhibit any changes in body weight and composition (Son et al., 2021a). In a recent report, another line of Irx3 knockout mice (Irx3^Δ/Δ) generated by CRISPR editing was also shown to be lean and protected against diet-induced obesity (Sobreira et al., 2021). However, in the same study, mice homozygous for a new deletion mutation of Irx5 (Irx5^Δ/Δ) exhibited early postnatal lethality, whereas heterozygous Irx5^Δ/+ mutant mice were found to show an anti-obesity phenotype like Irx3 knockout mice. While this discrepancy of Irx5 mutant phenotypes remains to be investigated, genetic background and/or deletion of specific genomic sequences affecting the expression of neighboring genes could be contributing factors.

Due to the requirement of Irx3 and Irx5 in the development of many organs, including heart (Costantini et al., 2005; Zhang et al., 2011; Gaborit et al., 2012; Kim et al., 2016) and bone (Cain et al., 2016; Bai et al., 2019; Tan et al., 2020) which are also important for energy homeostasis, whole body knockout mice of Irx3 and Irx5 are both runty and thus not ideal for studying metabolic regulation. To circumvent this, a mouse line harboring cis-heterozygous mutant allele of Irx3 and Irx5 (Irx3⁺Irx5⁺/Irx3^ΔIrx5^eGFP; Irx3/5^dHet) was employed to study the effects of half-reduction of the expression of Irx3 and Irx5 on energy homeostasis (Son et al., 2021a). As obesity-risk variants of FTO affect the expression levels of both IRX3 and IRX5 (Claussnitzer et al., 2015; Laber et al., 2021; Sobreira et al., 2021), Irx3/5^dHet mice serve as a preclinical model mimicking lower IRX3 and IRX5 expression levels in humans. Unlike Irx3^tLZ/tLZ and Irx5^eGFP/eGFP mice, Irx3/5^dHet mice do not show a runty phenotype and develop with a normal body length at weaning (Son et al., 2021a). Nonetheless, Irx3/5^dHet mice display lower body weight and fat mass (Figure 1B), indicating that the dosage of Irx3 and Irx5 is critical for body mass regulation and suggesting that Irx3 and Irx5 play overlapping functions in energy homeostasis. Body weight and mass composition are determined by the balance of energy (food) intake and energy expenditure. Irx3/5^dHet mice show reduced food intake as well as elevated energy homeostasis (Table 1). Specifically, they exhibit beiging of white adipose tissue (WAT) with upregulation of brown adipocyte markers including Ucp1 in WAT. In the hypothalamus, reduction of Irx3 and Irx5 dosage results in elevated neurogenesis during the early postnatal period leading to an increased number of orexigenic and anorexigenic arcuate neurons (Son et al., 2021a). Owing to the higher number of these leptin-sensing arcuate neurons, Irx3/5^dHet mice display enhanced hypothalamic leptin response and reduced food intake. Indeed, reduced food intake is a key feature of the metabolic phenotypes of Irx3/5^dHet mice as these mutant mice still exhibit a body weight significantly lower than their control counterparts at thermoneutrality, when the effects of adipose thermogenesis and difference in energy expenditure are minimized (Son et al., 2021a). These observations suggest that higher expression of IRX3 and IRX5 could lead to elevated food intake contributing to human obesity, which is mostly associated with excessive energy consumption.

The hypothalamic function of Irx3 in energy homeostasis has been examined in transgenic as well as conditional knockout models using Ins2-Cre, which targets specific hypothalamic cells with high Irx3 and Irx5 expression (see below). Ins2-Cre;Rosa26^EnR–Irx3 mice with hypothalamic expression of a dominant-negative form of Irx3 (EnR-Irx3; full length IRX3 protein fused to the Engrailed transcriptional repressor domain) exhibit a strong metabolic phenotype with reduced food intake and elevated energy expenditure, similar to those of Irx3^tLz/tLz and Irx5^eGFP/eGFP mice (Table 1; Smemo et al., 2014). In contrast, Ins2-Cre;Irx3^Flox/Flox mice with specific hypothalamic deletion of Irx3 display a less pronounced metabolic phenotype; they are not as lean as Ins2-Cre;Rosa26^EnR–Irx3 mice and do not exhibit any adipose beiging/energy expenditure phenotypes (Table 1). Specifically, the phenotypes of Ins2-Cre;Irx3^Flox/Flox mice include reduced food intake, enhanced hypothalamic leptin response, and elevated neurogenesis in the postnatal hypothalamus, which are also observed in Irx3/5^dHet mice (Figure 1B; Son et al., 2021a). Together, these results suggest a hypothalamic function of Irx3 as well as Irx5 in feeding regulation through the control of postnatal neurogenesis. As most clinical data have illustrated that the risk alleles of FTO are associated with increased energy intake, our data highlight hypothalamic postnatal neurogenesis regulated by IRX3 and IRX5 as a potential mechanism affecting leptin response in human obesity.

The hypothalamic ARC-ME contains diverse cell types involved in energy homeostasis (Timper and Bruning, 2017). de Araujo et al. (2019) reported that Irx3 is expressed in a subset of POMC neurons from the analysis of a public single-cell RNA-sequencing (scRNA-seq) dataset of ∼20,000 hypothalamic ARC-ME cells and suggested that POMC neuronal expression of Irx3 is important for the regulation of energy homeostasis (Campbell et al., 2017; de Araujo et al., 2019). On the contrary, neuronal expression of Irx3 and Irx5 is minimal in the postnatal mouse hypothalamus. Neither Irx3 nor Irx5 expression is detectable in the published transcriptional profiles of POMC neurons and AgRP neurons (Henry et al., 2015). Furthermore, in a recently published scRNA-seq dataset by Romanov et al., which profiled gene expression of the whole hypothalamus at diverse developmental timepoints from embryonic day (E) 15.5 to postnatal day (P) 23, Irx3 and Irx5 are almost exclusively expressed in radial glial cells at postnatal stages though their expression can be found in neurons of the posterior hypothalamus at embryonic timepoints (Romanov et al., 2020).

In our recent study, analysis of publicly available scRNA-seq datasets from adult hypothalamic ARC-ME revealed the expression of Irx3 and Irx5 mostly in RGLs including ependymocytes and tanycytes, as well as in some NG2⁺ OPCs. By RNA in situ hybridization, Irx3 and Irx5 expression are found along the wall of the third ventricle which harbors both ependymocytes and tanycytes (Figures 2A,B). Furthermore, by scRNA-seq analysis of Ins2-Cre;tdTomato⁺ cells from P10 ARC-ME, which include cells lining the third ventricle and their descendants in the ARC-ME, the expression of Irx3 and Irx5 is mainly detected in a novel RGL-NSC population in addition to tanycytes, ependymocytes, and NG2⁺ OPCs. Our data illustrate that Irx3 and Irx5 are predominantly expressed in the RGL-NSCs, which are distinct from tanycytes, and behave as neural progenitors in the postnatal mouse hypothalamus. Importantly, the function of Irx3 in postnatal neurogenesis in the hypothalamic ARC-ME and feeding regulation has been established by conditional deletion in these cells and their descendants in Ins2-Cre;Irx3^Flox/Flox mice (Son et al., 2021a). Before discussing the potential functions of Irx3 and Irx5 in RGL-NSCs, we provide below a brief review of postnatal-adult neurogenesis and description of different RGL cell types residing in the hypothalamus.

Neurogenesis is a complex and highly regulated process that results in the generation of new neurons. It occurs at high rates during the embryonic period when substantial quantities of new cells are generated by the proliferation/differentiation of neural precursor cells (NPCs, also known as radial glia cells (RGCs) as these NPCs possess astrocyte-like radial processes) (Gotz and Huttner, 2005; Taverna et al., 2014; Obernier and Alvarez-Buylla, 2019). Over the past decades, studies in multiple mammalian species have illustrated that substantial levels of neurogenesis persist in specific adult brain areas, known as neurogenic niches (Dimou and Gotz, 2014). Postnatal-adult neurogenesis corresponds to the series of events that lead to the production of new neurons in the postnatal-adult brain, from precursor cell division to the survival and functional integration of newly differentiated neurons (Lledo et al., 2006). Adult neurogenesis in the mouse brain starts around the second postnatal week (P14), when radial glia cells shift sharply from an embryonic to an adult state with distinct molecular identity from that of their embryonic progenitors, and continues throughout life (Hochgerner et al., 2018; Ghosh, 2019). In the adult mouse brain under normal conditions, well-characterized niches are mainly located in the subventricular zone (SVZ) of lateral ventricles (Doetsch et al., 1999; Magavi et al., 2000) and the hippocampal subgranular zone (SGZ) (Altman and Das, 1965). However, there are evidence suggesting constitutive neurogenesis also in the proximity of circumventricular organs including hypothalamus (Kokoeva et al., 2005, 2007; Hourai and Miyata, 2013).

Development of hypothalamic neuronal system starts during the embryonic period (Padilla et al., 2010; Ishii and Bouret, 2012; MacKay and Abizaid, 2014). In mice, hypothalamic neurons are mainly born during the embryonic period with a sharp peak of neurogenesis occurring around E12.5 (Padilla et al., 2010; Ishii and Bouret, 2012), followed by postnatal neurogenesis that actively contributes to the remodeling of hypothalamic neuronal population in juvenile (young adult; between P15 and P35) and adult mice (Lee et al., 2012; McNay et al., 2012; Haan et al., 2013; Yoo and Blackshaw, 2018; Figure 3). Although the basal (unstimulated) levels of neurogenesis in the adult hypothalamus are probably low and less than those seen in the well-established neurogenic niches, SVZ and SGZ (Lledo et al., 2006; Migaud et al., 2010), neurogenesis in the hypothalamus continues throughout adulthood and contributes to remodeling of the hypothalamic neuronal circuit. Early in vitro studies reported that cells dissociated from rodent hypothalamus, including the parenchymal regions and the ependymal layer of the third ventricle, proliferate, form neurospheres, and subsequently differentiate into both neural and glial lineages (Evans et al., 2002; Markakis et al., 2004; Xu et al., 2005), supporting the notion that third ventricle wall and its vicinity, particularly hypothalamic ARC-ME, are neurogenic niches in the adult mouse brain. These findings have been corroborated by studies using 5-bromo-2′-deoxyuridine (BrdU) or 5′-iodo-2′-deoxyuridine (IdU) labeling of proliferating cells as well as cell lineage analysis (Gotz and Huttner, 2005; Kokoeva et al., 2007; Lee et al., 2012; Li et al., 2012; McNay et al., 2012; Haan et al., 2013; Robins et al., 2013). ARC neurons exhibited substantial turnover in the adult mouse, with more than half of those neurons found at 4 weeks of age being replaced over the following 8 weeks (Pierce and Xu, 2010; Lee et al., 2012; Li et al., 2012; McNay et al., 2012). These adult-born hypothalamic neurons functionally integrate into the neuronal circuitry (Robins et al., 2013) and physiological responses including neuroendocrine regulation (e.g., release neurotransmitter/neuropeptides and leptin sensing) (Kokoeva et al., 2005; Pierce and Xu, 2010; Haan et al., 2013; Son et al., 2021a), suggesting adult neurogenesis likely contributes to other hypothalamic functions such as regulation of energy homeostasis.

In the SVZ and SGZ, postnatal and adult NPCs are also known as RGLs, which share the characteristics of embryonic RGCs, including radial morphology, apical contact with the brain ventricles and expression of stemness markers (Urban and Guillemot, 2014; Morales and Mira, 2019). They are capable of undergoing both self-renewal through cell division and generating other neural cell types through differentiation. Besides these two neurogenic niches, RGLs also exist in other CNS regions, such as in the retina, where they are known as Muller glia (Goldman, 2014), and in some circumventricular organs, such as the median eminence of the hypothalamus (Bennett et al., 2009; Hourai and Miyata, 2013; Furube et al., 2020).

Factors, such as hormonal signals, environment, and genetics, could affect postnatal neurogenesis in the hypothalamus. Specifically, remodeling of ARC through elevated neurogenesis by treatment with ciliary neurotrophic factor (CNTF) could lead to leptin-dependent weight loss and reduced food intake (Kokoeva et al., 2005). Secreted factors including epidermal growth factor (EGF), basic fibroblast growth factor (bFGF), insulin-like growth factor I (IGF-I) and brain-derived neurotrophic factor (BDNF) also could significantly stimulate proliferation, survival and development of newborn neurons in the adult stage (Pencea et al., 2001; Xu et al., 2005; Perez-Martin et al., 2010; Robins et al., 2013; Chaker et al., 2016).

Given the importance of the hypothalamus in controlling energy homeostasis, several studies using rodent models have evaluated the environmental effects on neurogenesis. In this aspect, perhaps the most widely studied factor is high fat diet (HFD), which has been reproducibly shown to impair survival of hypothalamic NSCs and inhibit neurogenesis in the hypothalamus (Lee et al., 2012, 2014; Li et al., 2012; McNay et al., 2012). For example, Li et al. (2012) reported that the neurogenic impairment of Sox2⁺ hypothalamic NSCs from chronic HFD treatment is associated with overactivation of the pro-inflammatory pathway involving IκB kinase β (IKKβ) and its downstream nuclear factor κB (NF-κB), as well as paracrine release of cytokines from neighboring microglia. By in vitro studies, they further suggested that IKKβ/NF-κB inhibit neuronal differentiation of these hypothalamic NSCs through direct activation of downstream Notch signaling (Li et al., 2012). Intriguingly, neurogenesis in the ME is increased in response to HFD in female mice illustrating that there is an apparent sex-difference in the control of hypothalamic neurogenesis (Lee et al., 2012, 2014). Although scRNA-seq analysis suggest that young male and female adult mice have a similar proportion of tanycytes and other neural cell types under normal diet (Campbell et al., 2017), their distinct responses to HFD could be attributed to multiple factors, such as sex hormone levels, pubertal neurogenesis in sexually dimorphic brain regions, penetrance of the blood-brain barrier, etc. (Ahmed et al., 2008; Lee et al., 2014). Furthermore, caloric restriction is associated with a tendency of reduced neurogenesis within the ME (Lee et al., 2014). On the other hand, heat exposure and physical activity facilitate proliferation of neuronal progenitor cells in the hypothalamus and promotes differentiation to neurons (Matsuzaki et al., 2009; Niwa et al., 2016).

In addition to extrinsic factors, genetic studies have begun to unveil the role of intrinsic factors in the control of postnatal ARC neurogenesis. For example, deletion of the nuclear factor I family of transcription factors (Nfia/b/x) in Rax⁺ tanycytes results in activation of Shh and Wnt signaling, which in turn stimulates proliferation of tanycytes and their robust neurogenic differentiation in postnatal mouse hypothalamus (Yoo et al., 2021). This study highlights the inhibitory functions of Nfia/b/x TFs in restricting the neurogenic differentiation of tanycytes and suggests the involvement of Shh and Wnt signaling in the control of hypothalamic postnatal neurogenesis. Goodman et al. (2020) reported that Fgf10 acts as a negative regulator of postnatal neurogenesis in mouse hypothalamus (Goodman et al., 2020). Conditional loss of Fgf10 in β-tanycytes retards their amplification, which is compensated by retention and delay of their transient intermediate progeny, eventually leading to increased number of parenchymal neurons in the VMH, DMH and ARC. Recently, Son et al. (2021a) demonstrated the regulatory functions of Irx3 and Irx5 in hypothalamic postnatal neurogenesis and ARC remodeling affecting leptin response. Specifically, Irx3/5^dHet mice as well as Ins2-Cre;Irx3^Flox/Flox mice with specific deletion of Irx3 in the RGL-NSCs both exhibit elevated neurogenesis in the postnatal ARC, leading to higher number of leptin-sensing neurons (Son et al., 2021a).

In the SVZ and SGZ of adult mouse brain, the majority of RGLs are mitotically inactive and remain largely in G0 (out of the cell cycle), a fundamental characteristic that distinguishes them from embryonic RGCs (Morales and Mira, 2019). These quiescent NSCs (qNSCs) can be activated (active NSCs, or aNSCs) to re-enter the cell cycle, becoming either rapidly proliferating intermediate progenitor cells (IPC) that subsequently give rise to newborn neuronal cells, or returning to quiescence (Figure 5). Quiescence of NSCs is typically marked by astroglia features (Agt, ApoE, Aldh1h, etc.) with high Hes and Id gene expression, while factors associated with aNSCs include Fgfr3, Ascl1 and cell cycle genes (e.g., cyclinD) (Shin et al., 2015; Urban et al., 2016; Morales and Mira, 2019; Obernier and Alvarez-Buylla, 2019; Urban et al., 2019). Using a combination of fate mapping and scRNA-seq analyses, recent studies have further suggested the presence of additional states between quiescence and active, such as “dormant” (or deeply quiescent) and “primed” states for qNSCs, as well as early, mid or late stages for aNSCs, illustrating the functional and molecular heterogeneity of adult NSCs (Dulken et al., 2017; Basak et al., 2018; Hochgerner et al., 2018; Shah et al., 2018; Bottes et al., 2021).

The balance between quiescence and activity is crucial for the long-term maintenance of adult NSC pools and prevention of tumors resulting from over-proliferation. Thus, this process is tightly regulated by multiple factors. Perhaps the most extensively studied signaling pathway in this context is Notch signaling, which plays a pivotal role in adult neurogenesis, promoting both quiescence and proliferation of NSCs. Deletion of the Notch effector gene Rbpj as well as inhibition of Notch signaling activate qNSCs, resulting in an immediate burst of neurogenesis, but ultimately lead to exhaustion of the NSC pool (Ehm et al., 2010; Imayoshi et al., 2010; Engler et al., 2018). On the other hand, activation of Notch signaling induces the expression of Hes and Hey families of TFs, which act together with Id factors, to maintain quiescence of NSCs through repression of the proneural TF Ascl1 (Bai et al., 2007; Urban et al., 2016; Boareto et al., 2017; Harris and Guillemot, 2019; Sueda et al., 2019). Shh signaling is another developmental pathway that has been implicated in postnatal and adult NSCs of the SVZ (Ahn and Joyner, 2005; Faigle and Song, 2013; Petrova et al., 2013; Daynac et al., 2016), where various components of the Shh signaling pathway are expressed. The use of Gli1-CreER mice illustrated that qNSCs and aNSCs of both SVZ and SGZ are Shh-responsive (Ahn and Joyner, 2005). Furthermore, a recent study using a combination of genetic fate mapping and transcriptome profiling studies revealed that Gli1⁺ qNSCs represent a long-term self-renewing qNSC subpopulation in the SGZ contributing to neurogenesis of the hippocampus (Bottes et al., 2021).

In our recent study, bioinformatics analysis has suggested that RGL-NSCs shift from quiescence to a more active state upon reduction of Irx3 and Irx5 dosage, which is consistent with the observation of elevated neurogenesis in Irx3/5^dHet mice (Son et al., 2021a). These findings imply that Irx3 and Irx5 negatively regulate NSC activation and postnatal neurogenesis. Based on their transcriptomic profiles, most Ins2-Cre-labeled RGL-NSCs are quiescent with high expression of Hes and Id genes, and only very few cells show Ascl1 expression, representing a small population of aNSCs (Figure 6). Intriguingly, many Shh pathway genes are expressed in a subset of the RGL-NSCs indicating that Ins2-Cre-labeled RGL-NSCs might represent another Shh-responsive cell population in the postnatal brain; the membrane receptors (Ptch1 and Smo) as well as the intracellular mediators of Shh signaling (Sufu, Gli1, Gli2 and Gli3) are expressed in the RGL-NSC population, whereas the Shh ligand is expressed in neighboring tanycytes (Figure 6). Relevant to this, Irx3 and several neural progenitor genes, including Pax6, Nkx2.2 and Olig2, are known to be regulated by Shh signaling during ventral neural tube development (Briscoe et al., 2000; Qi et al., 2001; Zhou et al., 2001), and all these neural progenitor genes are also expressed in the RGL-NSCs. Furthermore, multiple studies have suggested that Irx genes are involved in early development of the central nervous system (Bellefroid et al., 1998; Gomez-Skarmeta et al., 1998; Cavodeassi et al., 2001). In the developing embryonic mouse brain, Irx3 and Irx5 might regulate the expression of its putative target Ascl1 (Cohen et al., 2000), which is a key regulator of embryonic neurogenesis in the hypothalamus (McNay et al., 2006; Alvarez-Bolado, 2019). Our recent study also suggests that Irx3 and Irx5 could affect postnatal hypothalamic neurogenesis through cell cycle regulation of RGL-NSCs (Son et al., 2021a). Consistent with this notion, reduction of Iro proteins promotes cell proliferation by accelerating G1 to S transition in Drosophila imaginal disks (Barrios et al., 2015) and loss of both Irx3 and Irx5 results in a higher proportion of G2/M cells with a reduction of G1 cells in the developing mouse limb bud (Tao et al., 2020).

IRX3 and IRX5 have emerged as a strong link between the non-coding genetic variations of the FTO gene and obesity. Using genetic mouse models, work by us and others depicts their critical roles in metabolic regulation in the brain, as well as in peripheral organs such as adipose tissue (Smemo et al., 2014; Claussnitzer et al., 2015; Bjune et al., 2018; Sobreira et al., 2021; Son et al., 2021a,b). More recently, macrophage Irx3 has also been associated with metabolic inflammation and body weight control (Yao et al., 2021). In this review, we summarize the metabolic functions and regulatory mechanisms of Irx3 and Irx5 with a focus on the postnatal hypothalamus, where they are highly expressed, particularly in the newly identified RGL-NSCs giving rise to postnatal hypothalamic neurons, and regulate energy homeostasis. Recent technical advances such as chronic in vivo labeling, visualization tool, genetic lineage tracing, single-cell RNA sequencing and bioinformatic analysis have greatly contributed to our improved understanding of the hypothalamic neural precursor cells, and their contribution to hypothalamic neurogenesis. Using these approaches, we demonstrate that Ins2-Cre-labeled RGL-NSCs represent a bona fide population of NSCs in the postnatal mouse hypothalamus. Through differentiation into tanycytes and NG2⁺ OPCs, this novel NSC population likely contributes to both neuron and oligodendrocyte lineages in the hypothalamic ARC-ME, respectively.

Nonetheless, there are many remaining questions about RGL-NSCs and additional characterization is required. What factors regulate their stem cell behaviors and what are the molecular actions of Irx3 and Irx5 in these cells? Do they originate from a similar population of embryonic RGCs as tanycytes and ependymocytes, and what are the genes involved in their fate specification and divergence from other hypothalamic RGLs? Are they still present and functional in the adult and aging mouse hypothalamus?

While our current knowledge of hypothalamic RGL-NSCs is still limited, especially as their lineage relationship with other hypothalamic cell types is mainly based on computational analyses and lineage tracing experiments using the Ins2-Cre mouse line, additional in vivo fate mapping studies as well as clonal analysis using inducible labeling techniques specific to the RGL-NSC population are warranted. For example, the Hes5-CreERT2 mouse line, which has been previously used in mapping the NSC lineage of the hippocampal SGZ (Lugert et al., 2012), could be a powerful genetic tool to further investigate the lineage relationships between RGL-NSCs and other hypothalamic cell types such as tanycytes and NG2⁺ OPCs. In the hypothalamus, Hes5 is a marker of RGL-NSCs but is not found in other RGLs such as tanycytes, allowing for specific labeling of the RGL-NSC progeny (Figure 4A; Son et al., 2021a). In addition, the inducible nature of this mouse line, which is not available with the Ins2-Cre mouse line, will also enable targeting of RGL-NSCs at various timepoints during hypothalamus development, and investigating the functions of Irx3 and Irx5 as well as other regulatory factors in these RGL-NSCs in a spatiotemporal manner. At the same time, the lessons learnt from the neurogenic niches in SVZ and SGZ should provide us with many useful hints about potential genetic and environmental factors involved in the regulation of this novel hypothalamic NSC population. As RGL-NSCs and tanycytes display high expression of Notch, Shh and Fgf pathway genes (Figure 6), future studies focusing on these signaling pathways in the regulation of RGL-NSC behavior and hypothalamic neurogenesis in juvenile and adult mice will be informative. Furthermore, by defining the genes/pathways regulated by Irx3 and Irx5 in RGL-NSCs as well as their interplays with the Notch, Shh and Fgf pathways should unveil new knowledge about postnatal remodeling of the hypothalamus and provide mechanistic insights in NSC biology and obesity.

ZD, JS, and C-CH conceived, designed, and wrote the manuscript. All authors contributed to the article and approved the submitted version.

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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