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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Neurosci.</journal-id>
<journal-title>Frontiers in Neuroscience</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Neurosci.</abbrev-journal-title>
<issn pub-type="epub">1662-453X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fnins.2021.674719</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Neuroscience</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The Influence of Radio-Frequency Transmit Field Inhomogeneities on the Accuracy of G-ratio Weighted Imaging</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Emmenegger</surname> <given-names>Tim M.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1224616/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>David</surname> <given-names>Gergely</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Ashtarayeh</surname> <given-names>Mohammad</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1368568/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Fritz</surname> <given-names>Francisco J.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1358238/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Ellerbrock</surname> <given-names>Isabel</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/507642/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Helms</surname> <given-names>Gunther</given-names></name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/53677/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Balteau</surname> <given-names>Evelyne</given-names></name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/600056/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Freund</surname> <given-names>Patrick</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff6"><sup>6</sup></xref>
<xref ref-type="aff" rid="aff7"><sup>7</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Mohammadi</surname> <given-names>Siawoosh</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="aff" rid="aff6"><sup>6</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/482680/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Spinal Cord Injury Center Balgrist, University Hospital Zurich, University of Zurich</institution>, <addr-line>Zurich</addr-line>, <country>Switzerland</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Systems Neuroscience, University Medical Center Hamburg-Eppendorf</institution>, <addr-line>Hamburg</addr-line>, <country>Germany</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Clinical Neuroscience, Karolinska Institutet</institution>, <addr-line>Stockholm</addr-line>, <country>Sweden</country></aff>
<aff id="aff4"><sup>4</sup><institution>Medical Radiation Physics, Clinical Sciences Lund (IKVL), Lund University</institution>, <addr-line>Lund</addr-line>, <country>Sweden</country></aff>
<aff id="aff5"><sup>5</sup><institution>GIGA Institute, University of Li&#x00E8;ge</institution>, <addr-line>Li&#x00E8;ge</addr-line>, <country>Belgium</country></aff>
<aff id="aff6"><sup>6</sup><institution>Department of Neurophysics, Max Planck Institute for Human Cognitive and Brain Sciences</institution>, <addr-line>Leipzig</addr-line>, <country>Germany</country></aff>
<aff id="aff7"><sup>7</sup><institution>Wellcome Trust Centre for Neuroimaging, University College London</institution>, <addr-line>London</addr-line>, <country>United Kingdom</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Tim B. Dyrby, Technical University of Denmark, Denmark</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Viktor Vegh, The University of Queensland, Australia; Olivier Commowick, Inria Rennes&#x2013;Bretagne Atlantique Research Centre, France</p></fn>
<corresp id="c001">&#x002A;Correspondence: Siawoosh Mohammadi, <email>s.mohammadi@uke.de</email></corresp>
<fn fn-type="other" id="fn004"><p>This article was submitted to Brain Imaging Methods, a section of the journal Frontiers in Neuroscience</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>05</day>
<month>07</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>15</volume>
<elocation-id>674719</elocation-id>
<history>
<date date-type="received">
<day>01</day>
<month>03</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>01</day>
<month>06</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2021 Emmenegger, David, Ashtarayeh, Fritz, Ellerbrock, Helms, Balteau, Freund and Mohammadi.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Emmenegger, David, Ashtarayeh, Fritz, Ellerbrock, Helms, Balteau, Freund and Mohammadi</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>G-ratio weighted imaging is a non-invasive, <italic>in-vivo</italic> MRI-based technique that aims at estimating an aggregated measure of relative myelination of axons across the entire brain white matter. The MR g-ratio and its constituents (axonal and myelin volume fraction) are more specific to the tissue microstructure than conventional MRI metrics targeting either the myelin or axonal compartment. To calculate the MR g-ratio, an MRI-based myelin-mapping technique is combined with an axon-sensitive MR technique (such as diffusion MRI). Correction for radio-frequency transmit (B1+) field inhomogeneities is crucial for myelin mapping techniques such as magnetization transfer saturation. Here we assessed the effect of B1+ correction on g-ratio weighted imaging. To this end, the B1+ field was measured and the B1+ corrected MR g-ratio was used as the reference in a Bland-Altman analysis. We found a substantial bias (&#x2248;-89%) and error (&#x2248;37%) relative to the dynamic range of g-ratio values in the white matter if the B1+ correction was not applied. Moreover, we tested the efficiency of a data-driven B1+ correction approach that was applied retrospectively without additional reference measurements. We found that it reduced the bias and error in the MR g-ratio by a factor of three. The data-driven correction is readily available in the open-source hMRI toolbox (<ext-link ext-link-type="uri" xlink:href="http://www.hmri.info">www.hmri.info</ext-link>) which is embedded in the statistical parameter mapping (SPM) framework.</p>
</abstract>
<kwd-group>
<kwd>myelin volume fraction</kwd>
<kwd>axon volume fraction</kwd>
<kwd>radio-frequency transmit field inhomogeneities</kwd>
<kwd>B<sub>1</sub>+ correction</kwd>
<kwd>multi-parameter mapping</kwd>
<kwd>diffusion MRI</kwd>
<kwd>magnetization transfer saturation</kwd>
<kwd>MR g-ratio</kwd>
</kwd-group>
<contract-num rid="cn001">01EW1711A</contract-num>
<contract-num rid="cn001">01EW1711B</contract-num>
<contract-num rid="cn002">MO 2397/5-1</contract-num>
<contract-num rid="cn002">MO 2397/4-1</contract-num>
<contract-num rid="cn002">MO 2249/3-1</contract-num>
<contract-num rid="cn003">NT 2014-6193</contract-num>
<contract-num rid="cn004">PCEFP3_181362 / 1</contract-num>
<contract-num rid="cn005">BIOMED-HUB (programme 2014-2020)</contract-num>
<contract-sponsor id="cn001">Bundesministerium f&#x00FC;r Bildung und Forschung<named-content content-type="fundref-id">10.13039/501100002347</named-content></contract-sponsor>
<contract-sponsor id="cn002">Deutsche Forschungsgemeinschaft<named-content content-type="fundref-id">10.13039/501100001659</named-content></contract-sponsor>
<contract-sponsor id="cn003">Vetenskapsr&#x00E5;det<named-content content-type="fundref-id">10.13039/501100004359</named-content></contract-sponsor>
<contract-sponsor id="cn004">Schweizerischer Nationalfonds zur F&#x00F6;rderung der Wissenschaftlichen Forschung<named-content content-type="fundref-id">10.13039/501100001711</named-content></contract-sponsor>
<contract-sponsor id="cn005">European Regional Development Fund<named-content content-type="fundref-id">10.13039/501100008530</named-content></contract-sponsor>
<counts>
<fig-count count="12"/>
<table-count count="5"/>
<equation-count count="5"/>
<ref-count count="52"/>
<page-count count="17"/>
<word-count count="0"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1">
<title>Introduction</title>
<p>The g-ratio [i.e., the ratio between the inner (r) and outer (R) radius of an axon with myelin sheath (g-ratio = r/R)] of a given axon quantifies the degree of relative myelination, ranging between 0 (no axon) and 1 (no myelin). The g-ratio captures both axonal and myelin damage by incorporating axonal and myelin volumes in one metric, making it potentially more specific to tissue integrity than focusing on one of these aspects only. For example, in multiple sclerosis, the g-ratio increases if the underlying disease mechanism is solely driven by demyelination (<xref ref-type="bibr" rid="B51">Yu et al., 2019</xref>), but is expected to remain unaffected if demyelination is accompanied by axonal degeneration. To differentiate such processes and understand their functional implications, neuroscience and clinical research would greatly benefit from <italic>in-vivo</italic> whole-brain measurements of MR g-ratio. Until recently, the g-ratio was measurable only by means of histology (<xref ref-type="bibr" rid="B17">Hildebrand and Hahn, 1978</xref>), which restricted the analyses to a small number of axons and a limited number of small brain regions or pathways. <xref ref-type="bibr" rid="B42">Stikov et al. (2011</xref>, <xref ref-type="bibr" rid="B41">2015)</xref> introduced a methodology for an MRI-based whole-brain &#x201C;aggregate&#x201D; g-ratio mapping, to which we refer as &#x201C;MR g-ratio&#x201D; or &#x201C;g-ratio weighted imaging.&#x201D; In g-ratio weighted imaging, the MR g-ratio is computed on a voxel-by-voxel basis from the axonal (AVF) and myelin volume fraction (MVF) maps and reflects a weighted mean of g-ratio values within the voxel (<xref ref-type="bibr" rid="B49">West et al., 2016</xref>). Therefore, g-ratio weighted imaging requires the acquisition of separate sets of images that are sensitive to <italic>AVF</italic> and MVF, respectively (<xref ref-type="bibr" rid="B8">Campbell et al., 2018</xref>; <xref ref-type="bibr" rid="B30">Mohammadi and Callaghan, 2020</xref>). To generate MVF and AVF from the measured MR parameters, a calibration step is required that converts the measured MR-visible water signals into the respective volume fractions (<xref ref-type="bibr" rid="B30">Mohammadi and Callaghan, 2020</xref>).</p>
<p>Magnetization transfer saturation (MT<sub>sat</sub>) has often been used as proxy for MVF (<xref ref-type="bibr" rid="B31">Mohammadi et al., 2015</xref>) as it is minimally affected by the longitudinal relaxation time (<xref ref-type="bibr" rid="B15">Helms et al., 2008</xref>) and is expected to show high correlation with macromolecular content (<xref ref-type="bibr" rid="B39">Sereno et al., 2013</xref>; <xref ref-type="bibr" rid="B5">Callaghan et al., 2015a</xref>; <xref ref-type="bibr" rid="B8">Campbell et al., 2018</xref>), making it a sensitive metric of MVF. One common approach to estimate AVF complements the parameters from neurite orientation and dispersion density imaging (NODDI <xref ref-type="bibr" rid="B52">Zhang et al., 2012</xref>) with a MVF-proxy, e.g., MT<sub>sat</sub> (<xref ref-type="bibr" rid="B10">Ellerbrock and Mohammadi, 2018</xref>; <xref ref-type="bibr" rid="B21">Kamagata et al., 2019</xref>), to correct for the missing myelin water signal in diffusion MRI measurements (<xref ref-type="bibr" rid="B41">Stikov et al., 2015</xref>). Maps of MT<sub>sat</sub> can be obtained, among others, from the multi-parameter mapping (MPM) protocol (<xref ref-type="bibr" rid="B48">Weiskopf et al., 2013</xref>) in combination with the hMRI toolbox<sup><xref ref-type="fn" rid="footnote1">1</xref></sup> (<xref ref-type="bibr" rid="B7">Callaghan et al., 2019</xref>; <xref ref-type="bibr" rid="B44">Tabelow et al., 2019</xref>).</p>
<p>Although the MT<sub>sat</sub> measure is largely insensitive to transmit field (B<sub>1</sub>+) inhomogeneities (<xref ref-type="bibr" rid="B15">Helms et al., 2008</xref>), it still shows a residual dependence which introduces a bias and/or error in the MT<sub>sat</sub> maps that can propagate into the MR g-ratio and lead to systematic bias. Such B<sub>1</sub>+ inhomogeneities can be corrected based on an independently acquired B<sub>1</sub>+ field map measurement (<xref ref-type="bibr" rid="B14">Helms, 2015</xref>; <xref ref-type="bibr" rid="B16">Helms et al., 2021</xref>). Residual B<sub>1</sub>+ inhomogeneity effects on MT<sub>sat</sub> have been shown to be not negligible when the B<sub>1</sub>+ correction was omitted (<xref ref-type="bibr" rid="B14">Helms, 2015</xref>; <xref ref-type="bibr" rid="B16">Helms et al., 2021</xref>). However, the impact of B<sub>1</sub>+ correction on MR g-ratio estimates is unknown. Additionally, it is unclear whether these residual B<sub>1</sub>+ inhomogeneity in MT<sub>sat</sub> and the MR g-ratio can retrospectively be corrected using a data-driven B<sub>1</sub>+ field inhomogeneities estimation approach such as the &#x201C;unified segmentation based correction of R1 maps for B<sub>1</sub>+ inhomogeneities&#x201D; (UNICORT, (<xref ref-type="bibr" rid="B47">Weiskopf et al., 2011</xref>)).</p>
<p>In this study, we investigate the effect of B<sub>1</sub>+ inhomogeneities on MR g-ratio maps when omitting the B<sub>1</sub>+ correction. As a reference, we use the B<sub>1</sub>+ corrected MR g-ratio from a dataset of healthy controls. We compare the reference MR g-ratio values against (i) values obtained without B<sub>1</sub>+ correction and (ii) values obtained with B<sub>1</sub>+ correction using the data-driven UNICORT approach.</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="S2.SS1">
<title>Subjects</title>
<p>This study included 25 healthy control subjects (12 females, age (mean &#x00B1; standard deviation) of 25.4 &#x00B1; 2.4 years). They were recruited at the University Medical Centre Hamburg-Eppendorf and screened for neurological or psychiatric illness. The study was in agreement with the Declaration of Helsinki and was approved by the local ethics committee (&#x00C4;rztekammer Hamburg #PV5141).</p>
</sec>
<sec id="S2.SS2">
<title>Data Acquisition</title>
<p>Each subject was scanned twice within 1 week in a whole-body 3T Tim TRIO MR scanner (Siemens Healthcare, Erlangen, Germany) using the body RF-coil for transmission and a 32-channel radiofrequency (RF) head coil for signal reception, respectively. The MR acquisition on both scan days included a multi-parameter mapping (MPM) (<xref ref-type="bibr" rid="B48">Weiskopf et al., 2013</xref>; <xref ref-type="bibr" rid="B6">Callaghan et al., 2015b</xref>) and a diffusion-weighted imaging (DWI) protocol. The MPM protocol consists of three differently weighted 3D-multi-echo spoiled gradient echo sequences (Siemens FLASH). The echo train length and flip angle for the proton density (PD) weighted, T1-weighted, and magnetization transfer (MT) weighted sequences were 8/6, 8/21, and 6/6&#x00B0;, respectively. The MT-weighted sequence had a Gaussian RF pulse (2 kHz off resonance with 4 ms duration and a nominal flip angle of 220&#x00B0;). All other sequence parameters were the same for the three sequences: repetition time (TR) 25 ms, echo spacing, resolution 0.8 mm isotropic; field of view (FoV) 166 &#x00D7; 224 &#x00D7; 256 mm<sup>3</sup>, readout bandwidth 488 Hz/pixel, partially parallel imaging using the GRAPPA algorithm was employed in each phase-encoded direction (anterior-posterior and right-left) with 40 reference lines and a speed up factor of two, total acquisition time: &#x223C;25 min. The B<sub>1</sub>+ field reference map was acquired using the three-dimensional echo-planar imaging (3D EPI) method, including field maps for distortion correction (<xref ref-type="bibr" rid="B26">Lutti et al., 2010</xref>).</p>
<p>The DWI sequence was a twice-refocused single-shot spin-echo EPI scheme (<xref ref-type="bibr" rid="B36">Reese et al., 2003</xref>), consisting of 12 non-diffusion-weighted images (b<sub>0</sub> images), equidistantly distributed across the diffusion weighted images. The diffusion-weighted images were acquired at two <italic>b</italic>-values (1000<inline-formula><mml:math id="INEQ11"><mml:mfrac><mml:mi>s</mml:mi><mml:mrow><mml:mi>m</mml:mi><mml:msup><mml:mi>m</mml:mi><mml:mn>2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:math></inline-formula> and 2000<inline-formula><mml:math id="INEQ12"><mml:mfrac><mml:mi>s</mml:mi><mml:mrow><mml:mi>m</mml:mi><mml:msup><mml:mi>m</mml:mi><mml:mn>2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:math></inline-formula>), sampled along 60 unique diffusion-gradient directions within each shell. The entire protocol was repeated with identical parameters but with reversed phase encoding direction (anterior-posterior) to correct for susceptibility-related image distortions (blip-up, blip-down correction). In total, 264 images were acquired per subject (120 diffusion-weighted images, 12 b<sub>0</sub> images, each acquired twice). Other acquisition parameters were: 86 slices with no gap, TR = 7.1 s, TE = 122 ms, an isotropic voxel size of (1.6 mm)<sup>3</sup>, FoV = 224 &#x00D7; 224 &#x00D7; 138 mm<sup>3</sup>, 7/8 partial Fourier imaging in phase encoding direction, readout bandwidth. To accelerate the data acquisition, GRAPPA (in-plane acceleration with factor two) and simultaneous multi-slice acquisitions (&#x201C;multiband,&#x201D; slice acceleration factor two) (<xref ref-type="bibr" rid="B11">Feinberg et al., 2010</xref>; <xref ref-type="bibr" rid="B29">Moeller et al., 2010</xref>; <xref ref-type="bibr" rid="B50">Xu et al., 2013</xref>) were used as described in <xref ref-type="bibr" rid="B40">Setsompop et al. (2012)</xref>. The image reconstruction algorithm was provided by the University of Minnesota Centre for Magnetic Resonance Research. The total acquisition time was &#x223C;37 min.</p>
</sec>
<sec id="S2.SS3">
<title>Data Processing</title>
<p>MT<sub>sat</sub> maps were generated in the SPM-based hMRI toolbox (<xref ref-type="bibr" rid="B44">Tabelow et al., 2019</xref>). Note that the hMRI toolbox also generates additional maps of longitudinal (R<sub>1</sub>) and effective transverse relaxation rates (<inline-formula><mml:math id="INEQ15"><mml:msubsup><mml:mtext>R</mml:mtext><mml:mn>2</mml:mn><mml:mo>&#x22C6;</mml:mo></mml:msubsup></mml:math></inline-formula>) and PD. Three MT<sub>sat</sub> maps were generated: (i) <inline-formula><mml:math id="INEQ17"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> maps, without B<sub>1</sub>+ correction; (ii) <inline-formula><mml:math id="INEQ18"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> map, using the reference B<sub>1</sub>+ field map for correction (<xref ref-type="bibr" rid="B26">Lutti et al., 2010</xref>); and (iii) <inline-formula><mml:math id="INEQ19"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> maps, using the data-driven UNICORT approach for B<sub>1</sub>+ estimation (<xref ref-type="bibr" rid="B47">Weiskopf et al., 2011</xref>; see <xref ref-type="supplementary-material" rid="FS1">Supplementary Figure 2</xref>). UNICORT is a probabilistic framework for unified-segmentation based correction of R<sub>1</sub> maps for B<sub>1</sub>+ inhomogeneities. The framework incorporates a physically informed generative model of smooth B<sub>1</sub>+ inhomogeneities and their multiplicative effect on R<sub>1</sub> estimates (<xref ref-type="bibr" rid="B47">Weiskopf et al., 2011</xref>). Parameters used in UNICORT such as the smoothness and regularization were optimized for R<sub>1</sub> B<sub>1</sub>+ correction in a 3T scanner (i.e., Tim Trio scanner&#x2014;<xref ref-type="bibr" rid="B47">Weiskopf et al., 2011</xref>).</p>
<p>For B<sub>1</sub>+ correction, we used the following heuristic correction factor as detailed in <xref ref-type="bibr" rid="B14">Helms (2015)</xref>, and <xref ref-type="bibr" rid="B16">Helms et al. (2021)</xref>:</p>
<disp-formula id="S2.E1"><label>(1)</label><mml:math id="M1"><mml:mrow><mml:mrow><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mrow><mml:mtext>Corr</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup><mml:mfrac><mml:mrow><mml:mn>1</mml:mn><mml:mo>-</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mn>1</mml:mn><mml:mo>-</mml:mo><mml:mrow><mml:mi>C</mml:mi><mml:msubsup><mml:mtext>B</mml:mtext><mml:mn>1</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:mrow></mml:mfrac></mml:mrow></mml:mrow><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>where <italic>C</italic> has been calibrated to be 0.4 for the MT pulse used in this paper. B<sub>1</sub>+ can be either measured (<inline-formula><mml:math id="INEQ21"><mml:mrow><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mrow><mml:mtext>Corr</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>) or estimated with the UNICORT approach (<inline-formula><mml:math id="INEQ22"><mml:mrow><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mrow><mml:mtext>Corr</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>).</p>
<p>The DWI data were processed based on the pipeline described in <xref ref-type="bibr" rid="B10">Ellerbrock and Mohammadi (2018)</xref> using the SPM-based ACID toolbox<sup><xref ref-type="fn" rid="footnote2">2</xref></sup>. It included several artifact corrections such as Rician signal bias correction (i.e., denoising) (<xref ref-type="bibr" rid="B1">Andr&#x00E9; et al., 2014</xref>), correction for eddy current and motion artifacts (<xref ref-type="bibr" rid="B32">Mohammadi et al., 2010</xref>, <xref ref-type="bibr" rid="B33">2014</xref>), and correction for image distortions due to susceptibility artifact using reversed phase encoding (<xref ref-type="bibr" rid="B37">Ruthotto et al., 2012</xref>, <xref ref-type="bibr" rid="B38">2013</xref>; <xref ref-type="bibr" rid="B27">Macdonald and Ruthotto, 2018</xref>). The corrected images were fitted with the NODDI signal model (<xref ref-type="bibr" rid="B52">Zhang et al., 2012</xref>) to estimate the intra-cellular volume fraction (&#x03BD;<sub><italic>icvf</italic></sub>), the isotropic volume fraction (&#x03BD;<sub><italic>iso</italic></sub>), and the orientation dispersion index (ODI) in each voxel.</p>
</sec>
<sec id="S2.SS4">
<title>Spatial Alignment</title>
<sec id="S2.SS4.SSS1">
<title>Co-registration</title>
<p>The voxel-wise arithmetic between the MT<sub>sat</sub> and &#x03BD;<sub>icvf</sub> maps, necessary for MR g-ratio computation, requires an accurate spatial alignment between the two maps (<xref ref-type="bibr" rid="B31">Mohammadi et al., 2015</xref>). To this end, we created two white matter (WM) tissue probability maps (TPMs) based on the ODI and <inline-formula><mml:math id="INEQ24"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> maps, respectively (<xref ref-type="fig" rid="F1">Figure 1</xref>). To reduce the influence of contrast-specific artifacts (e.g., due to subject motion) on the registration quality, the WM TPM of the ODI map was co-registered to the WM TPM of the <inline-formula><mml:math id="INEQ25"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> map using rigid-body registration (<italic>spm_coreg</italic> algorithm, SPM toolbox). The estimated transformation parameters were applied to all other NODDI maps as well. Note that the segmentation quality of the second session was unsatisfactory for two subjects, and the <inline-formula><mml:math id="INEQ26"><mml:msubsup><mml:mtext>R</mml:mtext><mml:mn>1</mml:mn><mml:msub><mml:mrow><mml:mtext>B</mml:mtext></mml:mrow><mml:mn>1</mml:mn></mml:msub></mml:msubsup></mml:math></inline-formula> map (R<sub>1</sub> with B<sub>1</sub>+ inhomogeneities bias correction using the B<sub>1</sub>+ reference measurements) was used to generate the WM TPM instead. In another subject, the &#x03BD;<sub>iso</sub> was segmented instead of the ODI to achieve satisfactory WM segments.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Illustration of the spatial alignment pipeline of the MT<sub>sat</sub> and NODDI maps. The pipeline consists of (i) co-registration between MT<sub>sat</sub> and NODDI maps (driven by ODI map), (ii) normalization into MNI space, and (iii) back-projection of ROIs into the native space. Note that each subject consists of two sets of images acquired in separate sessions. In the co-registration step (section &#x201C;Co-registration&#x201D;), the white matter (WM) tissue probability map (TPM) of the ODI was co-registered to the WM TMP of the MT<sub>sat</sub> in each subject and session using rigid-body registration (<italic>spm_coreg</italic> algorithm, SPM12). The resulting transformation was applied to all other NODDI maps as well. In the normalization step (section &#x201C;Normalization&#x201D;), MT<sub>sat</sub> maps were roughly aligned with the T1-weighted MNI template in each subject and session using the <italic>Auto-Reorient</italic> function. The realigned MT<sub>sat</sub> maps from both sessions were then registered to their mid-point average using the Pairwise Longitudinal Registration (SPM12). In each subject, the mid-point average MT<sub>sat</sub> map was normalized to the MNI space using the DARTEL-based (<xref ref-type="bibr" rid="B2">Ashburner, 2007</xref>) Spatial Processing module. Finally, all deformation fields were converted to a single deformation field and applied on the NODDI maps. In the last step (section &#x201C;Region of Interest Selection&#x201D;), the ROIs and the WM masks were back-projected into the native space using the inverse of the combined deformation field.</p></caption>
<graphic xlink:href="fnins-15-674719-g001.tif"/>
</fig>
</sec>
<sec id="S2.SS4.SSS2">
<title>Normalization</title>
<p>Spatial normalization was performed in four steps. First, a rough alignment of the <inline-formula><mml:math id="INEQ34"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> maps with the T1-weighted MNI template image was achieved using the Auto-Reorient function (hMRI toolbox) and this was applied on the NODDI maps as well. Second, both <inline-formula><mml:math id="INEQ35"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> maps of each subject (corresponding to two sessions) were registered to the mid-point average using the Pairwise Longitudinal Registration (SPM12). Hereby, values below zero and above 10 were excluded to improve the registration. Third, the resulting mid-point average image was normalized to the MNI space using the DARTEL-based (<xref ref-type="bibr" rid="B2">Ashburner, 2007</xref>) Spatial Processing module (hMRI toolbox). Fourth, a combined deformation field was generated per subject and session, combining the deformation fields from steps 2 and 3.</p>
</sec>
</sec>
<sec id="S2.SS5">
<title>Computation of MVF<sub>MR</sub>, AVF<sub>MR</sub> and g<sub>MR</sub></title>
<p>In this section, our approach to estimating MVF and AVF from the measured MR parameters is introduced. The MR-based MVF (MVF<sub>MR</sub>) was assumed to be proportional to MT<sub>sat</sub> without intercept, following (<xref ref-type="bibr" rid="B30">Mohammadi and Callaghan, 2020</xref>):</p>
<disp-formula id="S2.E2"><label>(2)</label><mml:math id="M2"><mml:mrow><mml:msub><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mrow><mml:mi mathvariant="normal">&#x03B1;</mml:mi><mml:msub><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>The proportionality constant &#x03B1; was estimated from Equation (2) in a region where the histological MVF (MVF<sub>hist</sub>) was known. Due to the lack of own histological data, we used published histological data which contain the frequency distribution of inner-axon radius (<italic>r</italic>) and myelin sheath thickness (m) of 2,400 myelinated fibers in the medullary pyramids of a 71 years old human (see <xref ref-type="table" rid="T1">Table 1</xref> in <xref ref-type="bibr" rid="B13">Graf von Keyserlingk and Schramm, 1984</xref>). The total volume (TV) of the sample is the sum of the total volume of myelinated axons (TAV<sub>m</sub>), unmyelinated axons (TAV<sub>u</sub>), myelin volume (TMV), and extra-cellular volume (TEV). TAV<sub>m</sub> was calculated as <inline-formula><mml:math id="INEQ44"><mml:mrow><mml:msubsup><mml:mo largeop="true" symmetric="true">&#x2211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:msub><mml:mrow><mml:mtext>N</mml:mtext></mml:mrow><mml:mrow><mml:mtext>m</mml:mtext></mml:mrow></mml:msub></mml:msubsup><mml:mrow><mml:mi mathvariant="normal">&#x03C0;</mml:mi><mml:msubsup><mml:mtext>r</mml:mtext><mml:mi>i</mml:mi><mml:mn>2</mml:mn></mml:msubsup></mml:mrow></mml:mrow></mml:math></inline-formula> with <italic>i</italic> indexing the N<sub>m</sub> myelinated axons only, and TMV was computed as <inline-formula><mml:math id="INEQ46"><mml:mrow><mml:mrow><mml:msubsup><mml:mo largeop="true" symmetric="true">&#x2211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:msub><mml:mrow><mml:mtext>N</mml:mtext></mml:mrow><mml:mrow><mml:mtext>m</mml:mtext></mml:mrow></mml:msub></mml:msubsup><mml:mrow><mml:mi mathvariant="normal">&#x03C0;</mml:mi><mml:msup><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mtext>m</mml:mtext><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mn>2</mml:mn></mml:msup></mml:mrow></mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mtext>TAV</mml:mtext><mml:mrow><mml:mtext>m</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. TAV<sub>u</sub>, while not reported in <xref ref-type="bibr" rid="B13">Graf von Keyserlingk and Schramm (1984)</xref>, was found to be approximately 43% of TAV<sub>m</sub> for multiple mammals (<xref ref-type="bibr" rid="B43">Swadlow et al., 1980</xref>; <xref ref-type="bibr" rid="B22">LaMantia and Rakic, 1990</xref>; <xref ref-type="bibr" rid="B35">Olivares et al., 2001</xref>; <xref ref-type="bibr" rid="B46">Wang et al., 2008</xref>; <xref ref-type="bibr" rid="B25">Liewald et al., 2014</xref>). Note that the aforementioned papers typically reported the unmyelinated axons as 30% of the total volume of axons, which corresponds to 43% (= <inline-formula><mml:math id="INEQ49"><mml:mrow><mml:mfrac><mml:mn>0.3</mml:mn><mml:mrow><mml:mn>1</mml:mn><mml:mo>-</mml:mo><mml:mn>0.3</mml:mn></mml:mrow></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:math></inline-formula>) of TAV<sub>m</sub>. EVF was estimated to be 25%, according to <xref ref-type="bibr" rid="B23">Lehmenk&#x00FC;hler et al. (1993)</xref>, <xref ref-type="bibr" rid="B34">Nicholson and Hrab&#x00EC;tov&#x00E1; (2017)</xref>, <xref ref-type="bibr" rid="B45">T&#x00F8;nnesen et al. (2018)</xref>. Finally, MVF was calculated as</p>
<disp-formula id="S2.E3"><label>(3)</label><mml:math id="M3"><mml:mrow><mml:msub><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>hist</mml:mtext></mml:mrow></mml:msub><mml:mo>&#x2248;</mml:mo><mml:mrow><mml:mfrac><mml:mn>1</mml:mn><mml:mtext>TV</mml:mtext></mml:mfrac><mml:mrow><mml:munderover><mml:mo largeop="true" movablelimits="false" symmetric="true">&#x2211;</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mtext>N</mml:mtext></mml:mrow></mml:munderover><mml:mrow><mml:mi mathvariant="normal">&#x03C0;</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msup><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mtext>r</mml:mtext><mml:mi>j</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mtext>m</mml:mtext><mml:mi>j</mml:mi></mml:msub></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:mn>2</mml:mn></mml:msup><mml:mo>-</mml:mo><mml:msubsup><mml:mtext>r</mml:mtext><mml:mi>j</mml:mi><mml:mn>2</mml:mn></mml:msubsup></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mrow></mml:mrow></mml:mrow></mml:math></disp-formula>
<table-wrap position="float" id="T1">
<label>TABLE 1</label>
<caption><p>Group-averaged mean and standard deviation (SD) of <inline-formula><mml:math id="INEQ58"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ59"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ60"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> in 21 high-SNR ROIs.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Name</td>
<td valign="top" align="center">Acronym</td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ61"><mml:msubsup><mml:mtext mathvariant="bold">g</mml:mtext><mml:mi mathvariant="bold">MR</mml:mi><mml:mi mathvariant="bold">B1</mml:mi></mml:msubsup></mml:math></inline-formula> mean &#x00B1; SD</td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ62"><mml:msubsup><mml:mtext mathvariant="bold">AVF</mml:mtext><mml:mi mathvariant="bold">MR</mml:mi><mml:mi mathvariant="bold">B1</mml:mi></mml:msubsup></mml:math></inline-formula> mean &#x00B1; SD</td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ63"><mml:msubsup><mml:mtext mathvariant="bold">MVF</mml:mtext><mml:mi mathvariant="bold">MR</mml:mi><mml:mi mathvariant="bold">B1</mml:mi></mml:msubsup></mml:math></inline-formula> mean &#x00B1; SD</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Anterior limb of internal capsule right</td>
<td valign="top" align="center">ACL r</td>
<td valign="top" align="center">0.688 &#x00B1; 0.029</td>
<td valign="top" align="center">0.384 &#x00B1; 0.052</td>
<td valign="top" align="center">0.419 &#x00B1; 0.022</td>
</tr>
<tr>
<td valign="top" align="left">Retrolenticular part of internal capsule left</td>
<td valign="top" align="center">RIC l</td>
<td valign="top" align="center">0.665 &#x00B1; 0.020</td>
<td valign="top" align="center">0.341 &#x00B1; 0.025</td>
<td valign="top" align="center">0.428 &#x00B1; 0.023</td>
</tr>
<tr>
<td valign="top" align="left">Anterior corona radiata right</td>
<td valign="top" align="center">ACR r</td>
<td valign="top" align="center">0.651 &#x00B1; 0.012</td>
<td valign="top" align="center">0.321 &#x00B1; 0.014</td>
<td valign="top" align="center">0.435 &#x00B1; 0.014</td>
</tr>
<tr>
<td valign="top" align="left">Anterior corona radiata left</td>
<td valign="top" align="center">ACR l</td>
<td valign="top" align="center">0.644 &#x00B1; 0.015</td>
<td valign="top" align="center">0.313 &#x00B1; 0.014</td>
<td valign="top" align="center">0.440 &#x00B1; 0.018</td>
</tr>
<tr>
<td valign="top" align="left">Superior corona radiata right</td>
<td valign="top" align="center">SCR r</td>
<td valign="top" align="center">0.679 &#x00B1; 0.014</td>
<td valign="top" align="center">0.356 &#x00B1; 0.018</td>
<td valign="top" align="center">0.413 &#x00B1; 0.087</td>
</tr>
<tr>
<td valign="top" align="left">Superior corona radiata left</td>
<td valign="top" align="center">SCR l</td>
<td valign="top" align="center">0.674 &#x00B1; 0.013</td>
<td valign="top" align="center">0.350 &#x00B1; 0.016</td>
<td valign="top" align="center">0.419 &#x00B1; 0.017</td>
</tr>
<tr>
<td valign="top" align="left">Genu of corpus callosum</td>
<td valign="top" align="center">GCC</td>
<td valign="top" align="center">0.642 &#x00B1; 0.020</td>
<td valign="top" align="center">0.315 &#x00B1; 0.021</td>
<td valign="top" align="center">0.445 &#x00B1; 0.024</td>
</tr>
<tr>
<td valign="top" align="left">Body of corpus callosum</td>
<td valign="top" align="center">BCC</td>
<td valign="top" align="center">0.657 &#x00B1; 0.021</td>
<td valign="top" align="center">0.328 &#x00B1; 0.025</td>
<td valign="top" align="center">0.425 &#x00B1; 0.020</td>
</tr>
<tr>
<td valign="top" align="left">Posterior corona radiata right</td>
<td valign="top" align="center">PCR r</td>
<td valign="top" align="center">0.662 &#x00B1; 0.019</td>
<td valign="top" align="center">0.326 &#x00B1; 0.025</td>
<td valign="top" align="center">0.416 &#x00B1; 0.019</td>
</tr>
<tr>
<td valign="top" align="left">Posterior corona radiata left</td>
<td valign="top" align="center">PCR l</td>
<td valign="top" align="center">0.667 &#x00B1; 0.018</td>
<td valign="top" align="center">0.337 &#x00B1; 0.023</td>
<td valign="top" align="center">0.418 &#x00B1; 0.019</td>
</tr>
<tr>
<td valign="top" align="left">Posterior thalamic radiation right</td>
<td valign="top" align="center">PTR r</td>
<td valign="top" align="center">0.643 &#x00B1; 0.016</td>
<td valign="top" align="center">0.308 &#x00B1; 0.017</td>
<td valign="top" align="center">0.438 &#x00B1; 0.018</td>
</tr>
<tr>
<td valign="top" align="left">Posterior thalamic radiation left</td>
<td valign="top" align="center">PTR l</td>
<td valign="top" align="center">0.645 &#x00B1; 0.017</td>
<td valign="top" align="center">0.313 &#x00B1; 0.016</td>
<td valign="top" align="center">0.438 &#x00B1; 0.020</td>
</tr>
<tr>
<td valign="top" align="left">Sagittal stratum left</td>
<td valign="top" align="center">SAS l</td>
<td valign="top" align="center">0.645 &#x00B1; 0.021</td>
<td valign="top" align="center">0.314 &#x00B1; 0.020</td>
<td valign="top" align="center">0.439 &#x00B1; 0.025</td>
</tr>
<tr>
<td valign="top" align="left">External capsule right</td>
<td valign="top" align="center">EXC r</td>
<td valign="top" align="center">0.683 &#x00B1; 0.020</td>
<td valign="top" align="center">0.359 &#x00B1; 0.023</td>
<td valign="top" align="center">0.410 &#x00B1; 0.028</td>
</tr>
<tr>
<td valign="top" align="left">External capsule left</td>
<td valign="top" align="center">EXC l</td>
<td valign="top" align="center">0.682 &#x00B1; 0.025</td>
<td valign="top" align="center">0.357 &#x00B1; 0.023</td>
<td valign="top" align="center">0.408 &#x00B1; 0.034</td>
</tr>
<tr>
<td valign="top" align="left">Cingulum left</td>
<td valign="top" align="center">CGM l</td>
<td valign="top" align="center">0.661 &#x00B1; 0.023</td>
<td valign="top" align="center">0.330 &#x00B1; 0.028</td>
<td valign="top" align="center">0.422 &#x00B1; 0.029</td>
</tr>
<tr>
<td valign="top" align="left">Fornix/Stria terminalis left</td>
<td valign="top" align="center">FNX l</td>
<td valign="top" align="center">0.669 &#x00B1; 0.027</td>
<td valign="top" align="center">0.349 &#x00B1; 0.036</td>
<td valign="top" align="center">0.426 &#x00B1; 0.028</td>
</tr>
<tr>
<td valign="top" align="left">Superior longitudinal fasciculus right</td>
<td valign="top" align="center">SLF r</td>
<td valign="top" align="center">0.666 &#x00B1; 0.016</td>
<td valign="top" align="center">0.334 &#x00B1; 0.017</td>
<td valign="top" align="center">0.418 &#x00B1; 0.022</td>
</tr>
<tr>
<td valign="top" align="left">Superior longitudinal fasciculus left</td>
<td valign="top" align="center">SLF l</td>
<td valign="top" align="center">0.668 &#x00B1; 0.013</td>
<td valign="top" align="center">0.340 &#x00B1; 0.015</td>
<td valign="top" align="center">0.420 &#x00B1; 0.020</td>
</tr>
<tr>
<td valign="top" align="left">Superior fronto-occipital fasciculus right</td>
<td valign="top" align="center">SFO r</td>
<td valign="top" align="center">0.678 &#x00B1; 0.020</td>
<td valign="top" align="center">0.361 &#x00B1; 0.031</td>
<td valign="top" align="center">0.422 &#x00B1; 0.020</td>
</tr>
<tr>
<td valign="top" align="left">Superior fronto-occipital fasciculus left</td>
<td valign="top" align="center">SFO l</td>
<td valign="top" align="center">0.672 &#x00B1; 0.021</td>
<td valign="top" align="center">0.350 &#x00B1; 0.029</td>
<td valign="top" align="center">0.424 &#x00B1; 0.020</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>with j indexing all N fibers, yielding MVF<sub>hist</sub> &#x2248; 0.3623. Plugging this value into Equation (2) (assuming that MVF<sub>MR</sub> &#x2248; MVF<sub>hist</sub>) along with the group-average MT<sub>sat</sub> within the medullary pyramids (see <xref ref-type="fig" rid="F2">Figure 2</xref> for ROI definition) yielded an &#x03B1; of 0.2496 for <inline-formula><mml:math id="INEQ55"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, 0.2414 for <inline-formula><mml:math id="INEQ56"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, and 0.2884 for <inline-formula><mml:math id="INEQ57"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Location of the pyramidal tracts in the medulla oblongata ROI, overlaid on the group-averaged <inline-formula><mml:math id="INEQ64"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> map, that was used to determine the calibration constant, converting MT<sub>sat</sub> into MVF<sub>MR</sub> (section &#x201C;Computation of MVF<sub>MR</sub>, AVF<sub>MR</sub>, and g<sub>MR</sub>&#x2033;). To create this ROI, the corticospinal tract ROI of the JHU-ICBM-DTI-81 atlas, which extends across the pons and medulla pyramids, was modified to cover only the medulla pyramids. Left-right position: X = 82; anterior-posterior position: Y = 77; superior-inferior position, Z = 30.</p></caption>
<graphic xlink:href="fnins-15-674719-g002.tif"/>
</fig>
<p>The MR-based AVF (AVF<sub>MR</sub> = (1&#x2212;MVF<sub>MR</sub>)AWF<sub>MR</sub>) was calculated as</p>
<disp-formula id="S2.E4"><label>(4)</label><mml:math id="M4"><mml:mrow><mml:msub><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow></mml:msub><mml:mo rspace="7.5pt">=</mml:mo><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mn>1</mml:mn><mml:mo>-</mml:mo><mml:mrow><mml:mi mathvariant="normal">&#x03B1;</mml:mi><mml:msub><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mn>1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">&#x03BD;</mml:mi><mml:mrow><mml:mtext>iso</mml:mtext></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:msub><mml:mi mathvariant="normal">&#x03BD;</mml:mi><mml:mrow><mml:mtext>icvf</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>where AWF = (1&#x2212;&#x03BD;<sub>iso</sub>)&#x03BD;<sub>icvf</sub> is the axonal water fraction estimated from the NODDI parameters (<xref ref-type="bibr" rid="B41">Stikov et al., 2015</xref>) and MVF<sub>MR</sub> = &#x03B1;MT<sub>sat</sub>. The MR g-ratio was then computed according to <xref ref-type="bibr" rid="B42">Stikov et al. (2011</xref>, <xref ref-type="bibr" rid="B41">2015)</xref></p>
<disp-formula id="S2.E5"><label>(5)</label><mml:math id="M5"><mml:mrow><mml:msub><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:mn>1</mml:mn><mml:mo>-</mml:mo><mml:mfrac><mml:msub><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow></mml:msub><mml:mrow><mml:msub><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mrow></mml:msqrt></mml:mrow></mml:math></disp-formula>
<p>Note that three versions of MT<sub>sat</sub>, AVF<sub>MR</sub>, and g<sub>MR</sub> were generated according to notation in section &#x201C;Data Processing&#x201D;: (i) <inline-formula><mml:math id="INEQ79"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ80"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ81"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> for no correction, (ii) <inline-formula><mml:math id="INEQ82"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ83"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ84"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> for B<sub>1</sub>+ reference measurement, and (iii) <inline-formula><mml:math id="INEQ85"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ86"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ87"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> for UNICORT B<sub>1</sub>+ correction.</p>
</sec>
<sec id="S2.SS6">
<title>Definition of White Matter Masks</title>
<p>As g<sub>MR</sub> and its constituents (MVF<sub>MR</sub>, AVF<sub>MR</sub>) are defined only in the WM, we restricted the analysis to the WM by creating binary WM masks (<xref ref-type="bibr" rid="B30">Mohammadi and Callaghan, 2020</xref>). WM tissue probability maps (WM-TPM) were created for each subject by segmenting AWF and <inline-formula><mml:math id="INEQ92"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> using the hMRI toolbox, and taking their intersection according to <xref ref-type="bibr" rid="B30">Mohammadi and Callaghan (2020)</xref>. In two subjects, the <inline-formula><mml:math id="INEQ93"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> segmentation was of insufficient quality for segmentation and was replaced by the <inline-formula><mml:math id="INEQ94"><mml:msubsup><mml:mtext>R</mml:mtext><mml:mn>1</mml:mn><mml:msub><mml:mrow><mml:mtext>B</mml:mtext></mml:mrow><mml:mn>1</mml:mn></mml:msub></mml:msubsup></mml:math></inline-formula> map. A group-specific binary WM mask (WM<sub><italic>group</italic></sub>) was generated by averaging all individual WM-TPMs in the MNI space and thresholding it at 0.95.</p>
<p>A so-called high-SNR WM<sub><italic>group</italic></sub> was also defined by taking the intersection of the WM<sub><italic>group</italic></sub> and a binary signal-to-noise ratio (SNR) map. Hereby, the latter was used to reduce the number of voxels with unrealistically high values of &#x03BD;<sub><italic>icvf</italic></sub> (&#x03BD;<sub>icvf</sub>&#x2265;0.999). In 6 of 25 subjects, an SNR map was created by dividing the mean b<sub>0</sub> image by a single noise estimate in the native space and multiplied by the square root of the number of b<sub>0</sub> images per DWI dataset (<italic>n</italic> = 12). The noise was estimated within a noise ROI outside the brain in 72 images (6 subjects, both timepoints and 6 b0 images each) using the ACID toolbox, with the values averaged to obtain a single noise estimate. The threshold for SNR maps to create binary SNR map was chosen such that it minimizes the ratio between the number of artifactual voxels where &#x03BD;<sub>icvf</sub>&#x2265;0.999 and the total number of voxels in the SNR mask (<xref ref-type="fig" rid="F3">Figure 3B</xref>), yielding a value of 39. This was motivated by the observation that unrealistically high &#x03BD;<sub><italic>icvf</italic></sub> values typically occur in low-SNR areas (<xref ref-type="fig" rid="F3">Figures 3Aii,iii</xref>). This threshold selection represents a trade-off between removing unrealistic voxels while retaining as many voxels as possible.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>Relationship between signal-to-noise ratio (SNR) and unrealistically high &#x03BD;<sub>icvf</sub> values&#x2014;here defined as &#x03BD;<sub>icvf</sub> &#x2265; 0.999. <bold>(A)</bold> Sagittal, coronal, and axial view of the whole-brain SNR map (i), with a zoom-in view of the brainstem (ii). The brainstem is characterized by low SNR due to the spatial characteristics of the receive coil array (ii) and high occurrence of unrealistically high &#x03BD;<sub>icvf</sub> (iii), also shown as a binary mask (iv). <bold>(B)</bold> Given the co-occurrence of low SNR and unrealistically high &#x03BD;<sub>icvf</sub>, a binary SNR mask was created to exclude low-SNR voxels. To determine the optimal threshold for the SNR mask, the ratio between the number of voxels with unrealistically high &#x03BD;<sub>icvf</sub> and the total number of voxels within the mask were plotted against the SNR threshold. The solid dots and error bars represent the group mean and group standard deviation of the ratio, respectively. The SNR value that yielded the minimum of this ratio was considered optimal (SNR = 39, shown in red).</p></caption>
<graphic xlink:href="fnins-15-674719-g003.tif"/>
</fig>
</sec>
<sec id="S2.SS7">
<title>Region of Interest Selection</title>
<p>For the region of interest (ROI) analysis, the JHU-ICBM-DTI-81 WM atlas (<xref ref-type="bibr" rid="B19">Hua et al., 2008</xref>) was transformed into the native space using the inverse of the combined deformation field. Two sets of ROIs were defined: (i) whole-WM ROIs and (ii) high-SNR ROIs, used for the main analysis. The whole-WM ROIs included those of the JHU-ICBM-DTI-81 WM atlas that were completely in WM<sub><italic>group</italic></sub> defined in 2.6, yielding 43 ROIs (out of 48, leaving out the column and body of the fornix, the left and right cingulum part in the vicinity to the hippocampus, and the left and right uncinate fasciculus). The high-SNR ROIs included only those whole-WM ROIs that overlapped with the high-SNR WM<sub><italic>group</italic></sub> to at least 95%, yielding 21 ROIs (<xref ref-type="fig" rid="F4">Figure 4</xref> and <xref ref-type="table" rid="T2">Table 2</xref>). For the analyses, group-averaged g<sub>MR</sub>, AVF<sub>MR</sub>, and MVF<sub>MR</sub> were calculated within the WM<sub><italic>group</italic></sub>. Note that averaging included both sessions of each subject for all analyses except for the analysis in section &#x201C;Test-Retest Analysis of the Group-Averaged MR G-ratio, Axon, and Myelin Volume Fraction.&#x201D;</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>Location of the ROIs used for analysis. The 21 high-SNR ROIs (listed in <xref ref-type="table" rid="T1">Table 1</xref>) are part of the JHU-ICBM-DTI-81 WM atlas (<xref ref-type="bibr" rid="B19">Hua et al., 2008</xref>) and are displayed here on the group-averaged normalized <inline-formula><mml:math id="INEQ88"><mml:msubsup><mml:mtext>MT</mml:mtext><mml:mrow><mml:mtext>sat</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> image. Note that for ROI analysis, the ROIs were projected into the native space using the inverse of the combined deformation field.</p></caption>
<graphic xlink:href="fnins-15-674719-g004.tif"/>
</fig>
<table-wrap position="float" id="T2">
<label>TABLE 2</label>
<caption><p>Summary statistics of <inline-formula><mml:math id="INEQ95"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ96"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ97"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td/>
<td valign="top" align="center">&#x25B3;<sub>DR</sub></td>
<td valign="top" align="center">min<sub>i&#x2208;ROI</sub></td>
<td valign="top" align="center">max<sub>i&#x2208;ROI</sub></td>
<td valign="top" align="center">mean</td>
<td valign="top" align="center">SD</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ102"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>,</td>
<td valign="top" align="center">0.046</td>
<td valign="top" align="center">0.642</td>
<td valign="top" align="center">0.688</td>
<td valign="top" align="center">0.664</td>
<td valign="top" align="center">0.014</td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ103"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">0.076</td>
<td valign="top" align="center">0.308</td>
<td valign="top" align="center">0.384</td>
<td valign="top" align="center">0.337</td>
<td valign="top" align="center">0.020</td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ104"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">0.037</td>
<td valign="top" align="center">0.408</td>
<td valign="top" align="center">0.445</td>
<td valign="top" align="center">0.425</td>
<td valign="top" align="center">0.010</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>This table lists the dynamic range (&#x25B3;<sub>DR</sub>), lowest (min<sub>i &#x2208; ROI</sub>) and highest (max<sub>i &#x2208; ROI</sub>) ROI average value, mean value of the 21 analyzed ROI&#x2019;s (mean) with its corresponding standard deviation (SD).</italic></attrib>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="S2.SS8">
<title>Test-Retest Analysis of the Group-Averaged MR G-ratio, Axon, and Myelin Volume Fraction</title>
<p>The group-averaged <inline-formula><mml:math id="INEQ119"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> of the first and second session were compared within the previously mentioned 21 high-SNR ROIs using Bland-Altman plots (<xref ref-type="bibr" rid="B4">Bland and Altman, 1986</xref>). In the Bland-Altmann plots, the differences in <inline-formula><mml:math id="INEQ120"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> between the first (<inline-formula><mml:math id="INEQ121"><mml:msubsup><mml:mtext>g</mml:mtext><mml:msub><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mn>1</mml:mn></mml:msub><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>) and second (<inline-formula><mml:math id="INEQ122"><mml:msubsup><mml:mtext>g</mml:mtext><mml:msub><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mn>2</mml:mn></mml:msub><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>) session (<inline-formula><mml:math id="INEQ123"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mtext>g</mml:mtext><mml:msub><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mn>1</mml:mn></mml:msub><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mtext>g</mml:mtext><mml:msub><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mn>2</mml:mn></mml:msub><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula>) were plotted against their means (<inline-formula><mml:math id="INEQ124"><mml:mrow><mml:msubsup><mml:mtext>mean</mml:mtext><mml:mi>i</mml:mi><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:msub><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mn>1</mml:mn></mml:msub><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:msub><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mn>2</mml:mn></mml:msub><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mn>2</mml:mn></mml:mfrac></mml:mrow></mml:math></inline-formula>), where <italic>i</italic> is the index of ROI <italic>i</italic>. Bias captures the offset (<inline-formula><mml:math id="INEQ125"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:mrow><mml:mfrac><mml:mn>1</mml:mn><mml:mn>21</mml:mn></mml:mfrac><mml:mrow><mml:msubsup><mml:mo largeop="true" symmetric="true">&#x2211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mn>21</mml:mn></mml:msubsup><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup></mml:mrow></mml:mrow></mml:mrow></mml:math></inline-formula>), while error (<inline-formula><mml:math id="INEQ126"><mml:mrow><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:mrow><mml:mn>1.96</mml:mn><mml:mo>&#x22C5;</mml:mo><mml:msqrt><mml:mrow><mml:mfrac><mml:mn>1</mml:mn><mml:mn>20</mml:mn></mml:mfrac><mml:mrow><mml:msubsup><mml:mo largeop="true" symmetric="true">&#x2211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mn>21</mml:mn></mml:msubsup><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msup></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:mrow></mml:msqrt></mml:mrow></mml:mrow></mml:math></inline-formula>) captures the variation between the first and second scan within the <italic>i</italic><sup>th</sup> ROI. The computed <inline-formula><mml:math id="INEQ127"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msup></mml:math></inline-formula> and &#x03F5;<sup>retest</sup> were normalized by the dynamic range (&#x25B3;<sub>DR</sub>) of <inline-formula><mml:math id="INEQ130"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> within the high-SNR ROIs, defined as <inline-formula><mml:math id="INEQ131"><mml:mrow><mml:msub><mml:mi mathvariant="normal">&#x25B3;</mml:mi><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mrow><mml:mrow><mml:msub><mml:mo>max</mml:mo><mml:mrow><mml:mrow><mml:mtext>i</mml:mtext></mml:mrow><mml:mo>&#x2208;</mml:mo><mml:mrow><mml:mtext>ROI</mml:mtext></mml:mrow></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mtext>mean</mml:mtext><mml:mrow><mml:mtext>i</mml:mtext></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow><mml:mo>-</mml:mo><mml:mrow><mml:msub><mml:mo>min</mml:mo><mml:mrow><mml:mrow><mml:mtext>i</mml:mtext></mml:mrow><mml:mo>&#x2208;</mml:mo><mml:mrow><mml:mtext>ROI</mml:mtext></mml:mrow></mml:mrow></mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mtext>mean</mml:mtext><mml:mrow><mml:mtext>i</mml:mtext></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:mrow></mml:mrow></mml:math></inline-formula>, yielding the relative error (<inline-formula><mml:math id="INEQ132"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:mfrac><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="normal">&#x25B3;</mml:mi><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow></mml:msub></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:mrow></mml:math></inline-formula>) and relative bias (<inline-formula><mml:math id="INEQ133"><mml:mrow><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:mfrac><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="normal">&#x25B3;</mml:mi><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow></mml:msub></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:mrow></mml:math></inline-formula>). <italic>The same procedure was also applied to</italic> <inline-formula><mml:math id="INEQ134"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> and <inline-formula><mml:math id="INEQ135"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>.</p>
<p>The distinction between bias and error is important, because while a potential bias can be retrospectively corrected, the error in the MR g-ratio method defines its sensitivity to detect differences between individuals, groups, or time points. To reliably capture these differences, the error must be significantly lower than the expected effect size.</p>
</sec>
<sec id="S2.SS9">
<title>Influence of B<sub>1</sub>+ Correction in the Group-Averaged MR G-ratio, Axon, and Myelin Volume Fraction</title>
<p>Bland-Altman analysis was used to compare g<sub>MR</sub> with and without B<sub>1</sub>+ correction. In particular, the difference <inline-formula><mml:math id="INEQ161"><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mrow><mml:mtext>B</mml:mtext></mml:mrow><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:math></inline-formula> in g<sub>MR</sub> between <inline-formula><mml:math id="INEQ163"><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:math></inline-formula>, when using the reference method B<sub>1</sub>+ correction, and <inline-formula><mml:math id="INEQ164"><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>k</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:math></inline-formula>, when using no (k = NO) or UNICORT (k = UN) B<sub>1</sub>+ correction: <inline-formula><mml:math id="INEQ167"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mrow><mml:mtext>B</mml:mtext></mml:mrow><mml:mn>1</mml:mn></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>k</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula> was plotted against their mean: <inline-formula><mml:math id="INEQ168"><mml:mrow><mml:msubsup><mml:mtext>mean</mml:mtext><mml:mi>i</mml:mi><mml:mi>B1</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mrow><mml:mo>(</mml:mo><mml:msubsup><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>k</mml:mtext></mml:mrow></mml:msubsup><mml:mo>)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mn>2</mml:mn></mml:mfrac></mml:mrow></mml:math></inline-formula>, with <italic>i</italic> being the index of the 21 high-SNR ROIs. The bias and error associated with the lack of (or UNICORT) B<sub>1</sub>+ correction are defined as <inline-formula><mml:math id="INEQ169"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mi>B1</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mrow><mml:mfrac><mml:mn>1</mml:mn><mml:mn>21</mml:mn></mml:mfrac><mml:mrow><mml:msubsup><mml:mo largeop="true" symmetric="true">&#x2211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mn>21</mml:mn></mml:msubsup><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mi>B1</mml:mi></mml:msubsup></mml:mrow></mml:mrow></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="INEQ170"><mml:mrow><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mi>B1</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mrow><mml:mn>1.96</mml:mn><mml:mo>&#x22C5;</mml:mo><mml:msqrt><mml:mrow><mml:mfrac><mml:mn>1</mml:mn><mml:mn>20</mml:mn></mml:mfrac><mml:mrow><mml:msubsup><mml:mo largeop="true" symmetric="true">&#x2211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mn>21</mml:mn></mml:msubsup><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mi>B1</mml:mi></mml:msubsup><mml:mo>-</mml:mo><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mi>B1</mml:mi></mml:msup></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:mrow></mml:msqrt></mml:mrow></mml:mrow></mml:math></inline-formula>, respectively.</p>
<p>The computed &#x03F5;<sup>B1</sup> and <inline-formula><mml:math id="INEQ172"><mml:mpadded width="+5pt"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mi>B1</mml:mi></mml:msup></mml:mpadded></mml:math></inline-formula>were normalized by the dynamic range of <inline-formula><mml:math id="INEQ173"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> within the high-SNR ROIs, yielding the relative error (<inline-formula><mml:math id="INEQ174"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:mfrac><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mi>B1</mml:mi></mml:msup><mml:msub><mml:mi mathvariant="normal">&#x25B3;</mml:mi><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow></mml:msub></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:mrow></mml:math></inline-formula>) and relative bias (<inline-formula><mml:math id="INEQ175"><mml:mrow><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:mfrac><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mi>B1</mml:mi></mml:msup><mml:msub><mml:mi mathvariant="normal">&#x25B3;</mml:mi><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow></mml:msub></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:mrow></mml:math></inline-formula>). The same procedure was also applied to AVF<sub>MR</sub> and MVF<sub>MR</sub>, comparing them to their respective reference method and dynamic range. For MVF<sub>MR</sub>, the Bland-Altman analysis was additionally done using the whole-WM ROIs instead of the high-SNR ROIs (see section &#x201C;Region of Interest Selection&#x201D;) to assess the influence of including low-SNR voxels in the analysis.</p>
</sec>
<sec id="S2.SS10">
<title>Group Variability in MR G-ratio, Axon, and Myelin Volume Fraction</title>
<p>To assess group variability for each correction method, the coefficient-of-variation (CoV) across subjects and sessions was calculated for MVF<sub>MR</sub>, AVF<sub>MR</sub>, and g<sub>MR</sub> in the MNI space after applying tissue-weighted smoothing (<xref ref-type="bibr" rid="B44">Tabelow et al., 2019</xref>), yielding: <inline-formula><mml:math id="INEQ244"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ245"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ246"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, where MR &#x2208; {g<sub>MR</sub>,AVF<sub>MR</sub>,andMVF<sub>MR</sub>}. For tissue-weighted smoothing, a full width at half maximum Gaussian smoothing kernel of 6 mm was used. Bland-Altman analysis (see section &#x201C;Test-Retest Analysis of the Group-Averaged MR G-ratio, Axon, and Myelin Volume Fraction&#x201D;) was used to compare <inline-formula><mml:math id="INEQ248"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> and <inline-formula><mml:math id="INEQ249"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> against <inline-formula><mml:math id="INEQ250"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> based on the reference method, yielding bias (<inline-formula><mml:math id="INEQ251"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup></mml:math></inline-formula>) and error (&#x03F5;<sup>CoV</sup>) values. A higher variability across the brain is expected to increase <inline-formula><mml:math id="INEQ253"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup></mml:math></inline-formula> whereas a higher local variability is expected to increase &#x03F5;<sup> CoV</sup>.</p>
</sec>
</sec>
<sec id="S3">
<title>Results</title>
<sec id="S3.SS1">
<title>G-ratio, Myelin, and Axonal Volume Fraction Across the White Matter</title>
<p>Voxel-wise maps of group-averaged <inline-formula><mml:math id="INEQ255"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ256"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ257"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> in WM are shown in <xref ref-type="fig" rid="F5">Figure 5</xref>. The group-averaged mean and standard deviation of <inline-formula><mml:math id="INEQ258"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ259"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ260"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> in 21 high-SNR ROIs are reported in <xref ref-type="table" rid="T1">Table 1</xref> and <xref ref-type="fig" rid="F6">Figure 6</xref>. The dynamic range (&#x25B3;<sub>DR</sub>), minimum and maximum values, and mean and standard deviation of <inline-formula><mml:math id="INEQ261"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ262"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ263"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> across ROIs are listed in <xref ref-type="table" rid="T2">Table 2</xref>. The largest <inline-formula><mml:math id="INEQ264"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> and <inline-formula><mml:math id="INEQ265"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> were found in the right anterior limb of the internal capsule (0.688 and 0.384, respectively), while the largest <inline-formula><mml:math id="INEQ266"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> was in the genu of corpus callosum (0.445), where also the lowest <inline-formula><mml:math id="INEQ267"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> (0.642) can be found. The lowest <inline-formula><mml:math id="INEQ268"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ269"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> were found in the right posterior thalamic radiation (<inline-formula><mml:math id="INEQ270"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> = 0.308) and in the left external capsule (<inline-formula><mml:math id="INEQ271"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> = 0.408), respectively. The &#x25B3;<sub><italic>DR</italic></sub> was the smallest for <inline-formula><mml:math id="INEQ272"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> (0.037), followed by <inline-formula><mml:math id="INEQ273"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> (0.046) and <inline-formula><mml:math id="INEQ274"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> (0.076).</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption><p>Voxel-wise maps of group-averaged g<sup><italic>B1</italic></sup><sub>MR</sub>, AVF<sup><italic>B1</italic></sup><sub>MR</sub>, and MVF<sup><italic>B1</italic></sup><sub>MR</sub>, restricted to the group WM mask (cf. section &#x201C;Definition of White Matter Masks&#x201D;). Depicted are a single sagittal (x = 100), coronal (y = 91), and axial (z = 85) slice.</p></caption>
<graphic xlink:href="fnins-15-674719-g005.tif"/>
</fig>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption><p>Violin plots representing the distribution of <inline-formula><mml:math id="INEQ116"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> <bold>(A)</bold>, <inline-formula><mml:math id="INEQ117"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> <bold>(B)</bold>, and <inline-formula><mml:math id="INEQ118"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> <bold>(C)</bold> across the group and in 21 high-SNR ROIs listed in <xref ref-type="table" rid="T1">Table 1</xref>. The mean and standard deviation of the distribution are indicated by solid dot and whiskers, respectively.</p></caption>
<graphic xlink:href="fnins-15-674719-g006.tif"/>
</fig>
</sec>
<sec id="S3.SS2">
<title>Test-Retest Analysis of the Group-Averaged MR G-ratio, Axon, and Myelin Volume Fraction</title>
<p>The relative error (<inline-formula><mml:math id="INEQ275"><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>) and bias (<inline-formula><mml:math id="INEQ276"><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>) values of the test-retest analysis are summarized in <xref ref-type="table" rid="T3">Table 3</xref> and shown as Bland-Altmann plots in <xref ref-type="fig" rid="F7">Figure 7</xref>. The test-retest analysis revealed a <inline-formula><mml:math id="INEQ277"><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> below an absolute value of 8.4% for each metric (<inline-formula><mml:math id="INEQ278"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ279"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ280"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>), where the <inline-formula><mml:math id="INEQ281"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> showed the lowest <inline-formula><mml:math id="INEQ282"><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> with 0.79% (<xref ref-type="fig" rid="F7">Figure 7</xref> and <xref ref-type="table" rid="T3">Table 3</xref>). The <inline-formula><mml:math id="INEQ283"><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> was below 22.2% for each metric, where the <inline-formula><mml:math id="INEQ284"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> showed the lowest <inline-formula><mml:math id="INEQ285"><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> with 20.5% (<xref ref-type="fig" rid="F7">Figure 7</xref> and <xref ref-type="table" rid="T3">Table 3</xref>).</p>
<table-wrap position="float" id="T3">
<label>TABLE 3</label>
<caption><p>Bias and error between scans, in <inline-formula><mml:math id="INEQ136"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ137"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ138"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">MAP</td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ139"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x03F5;<sup>retest</sup></td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ141"><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ142"><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ143"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">0.0021</td>
<td valign="top" align="center">0.0102</td>
<td valign="top" align="center">4.57</td>
<td valign="top" align="center">22.17</td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ144"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">0.0006</td>
<td valign="top" align="center">0.0156</td>
<td valign="top" align="center">0.79</td>
<td valign="top" align="center">20.53</td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ145"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x2212;0.0031</td>
<td valign="top" align="center">0.0076</td>
<td valign="top" align="center">&#x2212;8.38</td>
<td valign="top" align="center">20.54</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>List of the bias (<inline-formula><mml:math id="INEQ146"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mi>r</mml:mi><mml:mi>e</mml:mi><mml:mi>t</mml:mi><mml:mi>e</mml:mi><mml:mi>s</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msup></mml:math></inline-formula>) and error (&#x03F5;<sup>retest</sup>) values, defined as in <xref ref-type="fig" rid="F7">Figure 7</xref>, along with their relative value with respect to the dynamic range &#x25B3;<sub>DR</sub>: <inline-formula><mml:math id="INEQ149"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mi>D</mml:mi><mml:mrow><mml:mi>R</mml:mi><mml:mo>%</mml:mo></mml:mrow></mml:mrow><mml:mrow><mml:mi>r</mml:mi><mml:mi>e</mml:mi><mml:mi>t</mml:mi><mml:mi>e</mml:mi><mml:mi>s</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:mfrac><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mi>r</mml:mi><mml:mi>e</mml:mi><mml:mi>t</mml:mi><mml:mi>e</mml:mi><mml:mi>s</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="normal">&#x25B3;</mml:mi><mml:mrow><mml:mi>D</mml:mi><mml:mi>R</mml:mi></mml:mrow></mml:msub></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math id="INEQ150"><mml:mrow><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mi>D</mml:mi><mml:mrow><mml:mi>R</mml:mi><mml:mo>%</mml:mo></mml:mrow></mml:mrow><mml:mrow><mml:mi>r</mml:mi><mml:mi>e</mml:mi><mml:mi>t</mml:mi><mml:mi>e</mml:mi><mml:mi>s</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:mfrac><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mi>r</mml:mi><mml:mi>e</mml:mi><mml:mi>t</mml:mi><mml:mi>e</mml:mi><mml:mi>s</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="normal">&#x25B3;</mml:mi><mml:mrow><mml:mi>D</mml:mi><mml:mi>R</mml:mi></mml:mrow></mml:msub></mml:mfrac><mml:mo rspace="5.8pt">&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:mrow></mml:math></inline-formula>.</italic></attrib>
</table-wrap-foot>
</table-wrap>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption><p>Depicted are scatter and Bland-Altman plots of <inline-formula><mml:math id="INEQ151"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> (first row), <inline-formula><mml:math id="INEQ152"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> (second row), and <inline-formula><mml:math id="INEQ153"><mml:mpadded width="+5pt"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:mpadded></mml:math></inline-formula>(third row) from two session across 21 WM regions (denoted high-SNR ROIs, see <xref ref-type="fig" rid="F4">Figure 4</xref>). The Bland-Altman plot illustrates the differences between values obtained from the two sessions (e.g., <inline-formula><mml:math id="INEQ154"><mml:msubsup><mml:mtext>g</mml:mtext><mml:msub><mml:mi>MR</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. <inline-formula><mml:math id="INEQ155"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mi>MR2</mml:mi><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>; <inline-formula><mml:math id="INEQ156"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mo>(</mml:mo><mml:msubsup><mml:mtext>g</mml:mtext><mml:mi>MR1</mml:mi><mml:mi>B1</mml:mi></mml:msubsup><mml:mo>)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mtext>g</mml:mtext><mml:mi>MR2</mml:mi><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula>) against their mean (e.g., <inline-formula><mml:math id="INEQ157"><mml:mrow><mml:msubsup><mml:mtext>mean</mml:mtext><mml:mi>i</mml:mi><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:mi>MR1</mml:mi><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:mi>MR2</mml:mi><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mn>2</mml:mn></mml:mfrac></mml:mrow></mml:math></inline-formula>, with <italic>i</italic> indexing the <italic>i</italic><sup>th</sup> ROI). Each point in the scatter plot represents the group-averaged value in a single ROI. The bold black line represents the bias (<inline-formula><mml:math id="INEQ158"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:mrow><mml:mfrac><mml:mn>1</mml:mn><mml:mn>21</mml:mn></mml:mfrac><mml:mrow><mml:msubsup><mml:mo largeop="true" symmetric="true">&#x2211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mn>21</mml:mn></mml:msubsup><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup></mml:mrow></mml:mrow></mml:mrow></mml:math></inline-formula>), while the dashed line shows error (<inline-formula><mml:math id="INEQ159"><mml:mrow><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:mrow><mml:mrow><mml:mn>1.96</mml:mn><mml:mo>&#x22C5;</mml:mo><mml:mi>SD</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mtext>retest</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:mrow></mml:math></inline-formula>) between the two sessions.</p></caption>
<graphic xlink:href="fnins-15-674719-g007.tif"/>
</fig>
</sec>
<sec id="S3.SS3">
<title>Influence of B<sub>1</sub>+ Correction on the Group-Averaged MR G-ratio, Axon, and Myelin Volume Fraction</title>
<p>The relative error (<inline-formula><mml:math id="INEQ286"><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>) and bias (<inline-formula><mml:math id="INEQ287"><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>) values of the B<sub>1</sub>+ correction analysis are summarized in <xref ref-type="table" rid="T4">Table 4</xref> and shown as Bland-Altmann plots in <xref ref-type="fig" rid="F8">Figures 8</xref>, <xref ref-type="fig" rid="F9">9</xref>. For g<sub>MR</sub>, compared to the no-correction case, UNICORT showed both lower <inline-formula><mml:math id="INEQ289"><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> (UNICORT vs. no correction: 10.9% vs. 37.0%) and <inline-formula><mml:math id="INEQ290"><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> (30.4% vs. &#x2212;89.1%). For both AVF<sub>MR</sub> and MVF<sub>MR</sub>, UNICORT yielded lower <inline-formula><mml:math id="INEQ293"><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> (UNICORT vs. no correction; AVF<sub>MR</sub>: 5.3% vs. 15.8%; 16.2% vs. 59.5%) and lower <inline-formula><mml:math id="INEQ295"><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> (AVF<sub>MR</sub>: 14.5% vs. &#x2212;40.8%; MVF<sub>MR</sub>: 48.6% vs. 143.2%). Altogether, the UNICORT correction reduced the bias and error in the MR g-ratio and its constituents by roughly a factor of three. The lower <inline-formula><mml:math id="INEQ298"><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> and <inline-formula><mml:math id="INEQ299"><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> associated with UNICORT was also reflected by the fact that values of <inline-formula><mml:math id="INEQ300"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ301"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ302"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> (<xref ref-type="fig" rid="F8">Figure 8</xref>, lower panel) lie closer to the unit slope line than values of <inline-formula><mml:math id="INEQ303"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ304"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ305"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula> (<xref ref-type="fig" rid="F8">Figure 8</xref>, upper panel). When computing <inline-formula><mml:math id="INEQ306"><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> and <inline-formula><mml:math id="INEQ307"><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> of g<sub>MR</sub> in the whole-WM ROIs (see <xref ref-type="supplementary-material" rid="FS1">Supplementary Figure 1</xref>), <inline-formula><mml:math id="INEQ309"><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> was consistently lower for both the no-correction case (whole-WM ROIs vs. high-SNR ROIs: 36.5% vs. 143.2%) and UNICORT (13.1% vs. 48.6%), whereas <inline-formula><mml:math id="INEQ310"><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> was similar (no-correction: 52.8% vs. 59.5%; UNICORT: 24.0% vs. 16.2%).</p>
<table-wrap position="float" id="T4">
<label>TABLE 4</label>
<caption><p>Bias and error between methods, in g<sub>MR</sub>, AVF<sub>MR</sub>, and MVF<sub>MR</sub>.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">MAP</td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ182"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mi>B1</mml:mi></mml:msup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x03F5;<sup>B1</sup></td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ184"><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ185"><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mrow><mml:mtext>DR</mml:mtext></mml:mrow><mml:mo>%</mml:mo></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula></td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ186"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. <inline-formula><mml:math id="INEQ187"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x2013;0.041</td>
<td valign="top" align="center">0.017</td>
<td valign="top" align="center">&#x2013;89.13</td>
<td valign="top" align="center">36.96</td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ190"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. <inline-formula><mml:math id="INEQ191"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">0.014</td>
<td valign="top" align="center">0.005</td>
<td valign="top" align="center">30.44</td>
<td valign="top" align="center">10.87</td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ192"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. <inline-formula><mml:math id="INEQ193"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x2013;0.031</td>
<td valign="top" align="center">0.012</td>
<td valign="top" align="center">&#x2013;40.79</td>
<td valign="top" align="center">15.79</td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ196"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. <inline-formula><mml:math id="INEQ197"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">0.011</td>
<td valign="top" align="center">0.004</td>
<td valign="top" align="center">14.47</td>
<td valign="top" align="center">5.26</td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ198"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. <inline-formula><mml:math id="INEQ199"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">0.053</td>
<td valign="top" align="center">0.022</td>
<td valign="top" align="center">143.24</td>
<td valign="top" align="center">59.46</td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="INEQ200"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. <inline-formula><mml:math id="INEQ201"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x2013;0.018</td>
<td valign="top" align="center">0.006</td>
<td valign="top" align="center">&#x2013;48.65</td>
<td valign="top" align="center">16.22</td>
</tr>
<tr>
<td valign="top" align="left">EWM <inline-formula><mml:math id="INEQ204"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. <inline-formula><mml:math id="INEQ205"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">0.033</td>
<td valign="top" align="center">0.048</td>
<td valign="top" align="center">36.48</td>
<td valign="top" align="center">52.75</td>
</tr>
<tr>
<td valign="top" align="left">EWM <inline-formula><mml:math id="INEQ206"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. <inline-formula><mml:math id="INEQ207"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x2013;0.012</td>
<td valign="top" align="center">0.022</td>
<td valign="top" align="center">&#x2013;13.08</td>
<td valign="top" align="center">23.96</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>List of the bias (<inline-formula><mml:math id="INEQ210"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mi>B</mml:mi><mml:mn>1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) and error (&#x03F5;<sup>B1</sup>) values as defined in <xref ref-type="fig" rid="F9">Figure 9</xref>, along with their relative value with respect to the dynamic range&#x25B3;<sub>DR</sub>: <inline-formula><mml:math id="INEQ213"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mi>D</mml:mi><mml:mrow><mml:mi>R</mml:mi><mml:mo>%</mml:mo></mml:mrow></mml:mrow><mml:mrow><mml:mi>B</mml:mi><mml:mn>1</mml:mn></mml:mrow></mml:msubsup><mml:mo rspace="7.5pt">=</mml:mo><mml:mrow><mml:mfrac><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mi>B</mml:mi><mml:mn>1</mml:mn></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="normal">&#x25B3;</mml:mi><mml:mrow><mml:mi>D</mml:mi><mml:mi>R</mml:mi></mml:mrow></mml:msub></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math id="INEQ214"><mml:mrow><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mi>D</mml:mi><mml:mrow><mml:mi>R</mml:mi><mml:mo>%</mml:mo></mml:mrow></mml:mrow><mml:mrow><mml:mi>B</mml:mi><mml:mn>1</mml:mn></mml:mrow></mml:msubsup><mml:mo rspace="7.5pt">=</mml:mo><mml:mrow><mml:mfrac><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mi>B</mml:mi><mml:mn>1</mml:mn></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="normal">&#x25B3;</mml:mi><mml:mrow><mml:mi>D</mml:mi><mml:mi>R</mml:mi></mml:mrow></mml:msub></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:mrow></mml:math></inline-formula>. Note that the error and bias in the last two rows were obtained when using the whole-WM ROIs instead of the high-SNR ROIs (see <xref ref-type="supplementary-material" rid="FS1">Supplementary Figure 1</xref>).</italic></attrib>
</table-wrap-foot>
</table-wrap>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption><p>Scatter plots of g<sub>MR</sub>, AVF<sub>MR</sub>, and MVF<sub>MR</sub>, plotting values obtained without B<sub>1</sub>+ correction (superscript: NO, top row) and with UNICORT B<sub>1</sub>+ correction (superscript: UN, bottom row) against values obtained with the reference method, i.e., B<sub>1</sub>+ field map correction (superscript: B1). A dashed unit slope line is plotted for reference. Each point in the scatter plot represents the group-averaged value in a single ROI (see <xref ref-type="fig" rid="F4">Figure 4</xref> for the locations of the 21 high-SNR ROIs).</p></caption>
<graphic xlink:href="fnins-15-674719-g008.tif"/>
</fig>
<fig id="F9" position="float">
<label>FIGURE 9</label>
<caption><p>Bland-Altman plots of g<sub>MR</sub>, AVF<sub>MR</sub>, and MVF<sub>MR</sub>, comparing values obtained without B<sub>1</sub>+ correction (NO, top row) and with UNICORT B<sub>1</sub>+ correction (UN, bottom row) against values obtained by B<sub>1</sub>+ field map correction (superscript: B1). The Bland-Altman plot illustrates the differences between values obtained by two different methods (reference vs. tested method); e.g., <inline-formula><mml:math id="INEQ221"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mi>B1</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>k</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula> against their mean (<inline-formula><mml:math id="INEQ222"><mml:mrow><mml:msubsup><mml:mtext>mean</mml:mtext><mml:mi>i</mml:mi><mml:mi>B1</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>k</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mn>2</mml:mn></mml:mfrac></mml:mrow></mml:math></inline-formula>, with k = {<italic>UN</italic>, <italic>NO</italic>} and <italic>i</italic> indexing the <italic>i</italic><sup>th</sup> ROI). Each point in the scatter plot represents the group-averaged value in a single ROI (see <xref ref-type="fig" rid="F4">Figure 4</xref> for the locations of the 21 high-SNR ROIs). The bold black line represents the bias (<inline-formula><mml:math id="INEQ224"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mi>B1</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mrow><mml:msubsup><mml:mo largeop="true" symmetric="true">&#x2211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mn>21</mml:mn></mml:msubsup><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mi>B1</mml:mi></mml:msubsup></mml:mrow></mml:mrow></mml:math></inline-formula>), while the dashed line shows error (<inline-formula><mml:math id="INEQ225"><mml:mrow><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mi>B1</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mrow><mml:mrow><mml:mn>1.96</mml:mn><mml:mo>&#x22C5;</mml:mo><mml:mi>SD</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:mrow></mml:math></inline-formula>) between the reference and the tested method. Error and bias values averaged across all ROIs and subjects are listed in <xref ref-type="table" rid="T5">Table 5</xref>.</p></caption>
<graphic xlink:href="fnins-15-674719-g009.tif"/>
</fig>
</sec>
<sec id="S3.SS4">
<title>Group Variability in MR G-ratio, Axon, and Myelin Volume Fraction</title>
<p>g<sub>MR</sub> showed on average smaller CoV than AVF<sub>MR</sub> and MVF<sub>MR</sub> (<xref ref-type="fig" rid="F10">Figure 10</xref>). In all maps, the CoV was the highest in the deep brain areas. The relative error (<inline-formula><mml:math id="INEQ314"><mml:mrow><mml:mfrac><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup><mml:msup><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msup></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:math></inline-formula>) and bias (<inline-formula><mml:math id="INEQ315"><mml:mrow><mml:mfrac><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup><mml:msup><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msup></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:math></inline-formula>) values of CoV with respect to the B<sub>1</sub>+ reference measurement are summarized in <xref ref-type="table" rid="T5">Table 5</xref> and the error and bias are also displayed as Bland-Altman density plot in <xref ref-type="fig" rid="F11">Figure 11</xref>. For g<sub>MR</sub>, compared to the no correction case, UNICORT showed similar &#x03F5;<sup>CoV</sup> (UNICORT vs. no correction: 0.6% vs. 0.6%) but lower <inline-formula><mml:math id="INEQ318"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup></mml:math></inline-formula> (&#x2212;0.1% vs. &#x2212;0.4%). UNICORT yielded higher &#x03F5;<sup>CoV</sup> (UNICORT vs. no correction; 1.0% vs. 0.8%) and lower <inline-formula><mml:math id="INEQ320"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup></mml:math></inline-formula> (&#x2212;0.2% vs. &#x2212;0.4%) for AVF<sub>MR</sub>, and higher &#x03F5;<sup>CoV</sup> (1.2% vs. 0.4%) and higher <inline-formula><mml:math id="INEQ323"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup></mml:math></inline-formula>(&#x2212;0.5% vs. &#x2212;0.1%) for MVF<sub>MR</sub>. The lower <inline-formula><mml:math id="INEQ325"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup></mml:math></inline-formula> of g<sub>MR</sub> and AVF<sub>MR</sub> associated with UNICORT reveals itself as a slight shift of the points toward the unit slope line in the scatter density plot (<xref ref-type="fig" rid="F12">Figure 12</xref>).</p>
<fig id="F10" position="float">
<label>FIGURE 10</label>
<caption><p>Coefficient of variation (CoV) maps of g<sub>MR</sub>, AVF<sub>MR</sub>, and MVF<sub>MR</sub> with B<sub>1</sub>+ correction (<inline-formula><mml:math id="INEQ229"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ230"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>AVF</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ231"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>MVF</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula>), no correction (<inline-formula><mml:math id="INEQ232"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ233"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>AVF</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ234"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>MVF</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>), and UNICORT B<sub>1</sub>+ correction (<inline-formula><mml:math id="INEQ235"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="INEQ236"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>AVF</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>, and <inline-formula><mml:math id="INEQ237"><mml:msubsup><mml:mtext>CoV</mml:mtext><mml:mrow><mml:mtext>MVF</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula>). CoV maps, expressed in percentage, were computed as the voxel-wise ratio between the group mean and group standard deviation maps of the normalized g<sub>MR</sub>, AVF<sub>MR</sub>, or MVF<sub>MR</sub>. The voxel-wise computation of CoV is restricted to the group WM mask (cf. section &#x201C;Definition of White Matter Masks&#x201D;). Shown are a single coronal (y = 91), sagittal (x = 100), and axial (z = 85) slice.</p></caption>
<graphic xlink:href="fnins-15-674719-g010.tif"/>
</fig>
<table-wrap position="float" id="T5">
<label>TABLE 5</label>
<caption><p>Bias and error between methods, in the CoV of g<sub>MR</sub>, AVF<sub>MR</sub>, and MVF<sub>MR</sub>.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">MAP</td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ331"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x03F5;<sup>CoV</sup></td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ333"><mml:mrow><mml:mfrac><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup><mml:msubsup><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mi mathvariant="bold">B</mml:mi><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:math></inline-formula></td>
<td valign="top" align="center"><inline-formula><mml:math id="INEQ334"><mml:mrow><mml:mfrac><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup><mml:msubsup><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mi mathvariant="bold">B</mml:mi><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:math></inline-formula></td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">CoV <inline-formula><mml:math id="INEQ335"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. CoV <inline-formula><mml:math id="INEQ336"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x2212;0.42</td>
<td valign="top" align="center">0.56</td>
<td valign="top" align="center">&#x2212;17.3</td>
<td valign="top" align="center">23.1</td>
</tr>
<tr>
<td valign="top" align="left">CoV <inline-formula><mml:math id="INEQ337"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. CoV <inline-formula><mml:math id="INEQ338"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x2212;0.12</td>
<td valign="top" align="center">0.62</td>
<td valign="top" align="center">&#x2212;4.9</td>
<td valign="top" align="center">25.5</td>
</tr>
<tr>
<td valign="top" align="left">CoV <inline-formula><mml:math id="INEQ339"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. CoV <inline-formula><mml:math id="INEQ340"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x2212;0.40</td>
<td valign="top" align="center">0.78</td>
<td valign="top" align="center">&#x2212;7.3</td>
<td valign="top" align="center">14.3</td>
</tr>
<tr>
<td valign="top" align="left">CoV <inline-formula><mml:math id="INEQ341"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. CoV <inline-formula><mml:math id="INEQ342"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x2212;0.21</td>
<td valign="top" align="center">1.02</td>
<td valign="top" align="center">&#x2212;3.8</td>
<td valign="top" align="center">18.7</td>
</tr>
<tr>
<td valign="top" align="left">CoV <inline-formula><mml:math id="INEQ343"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. CoV <inline-formula><mml:math id="INEQ344"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x2212;0.05</td>
<td valign="top" align="center">0.41</td>
<td valign="top" align="center">&#x2212;1.1</td>
<td valign="top" align="center">9.2</td>
</tr>
<tr>
<td valign="top" align="left">CoV <inline-formula><mml:math id="INEQ345"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> vs. CoV <inline-formula><mml:math id="INEQ346"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mrow><mml:mtext>UN</mml:mtext></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="center">&#x2212;0.52</td>
<td valign="top" align="center">1.20</td>
<td valign="top" align="center">&#x2212;11.9</td>
<td valign="top" align="center">27.0</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>List of the bias (<inline-formula><mml:math id="INEQ347"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mi>C</mml:mi><mml:mi>o</mml:mi><mml:mi>V</mml:mi></mml:mrow></mml:msup></mml:math></inline-formula>) and error (&#x03F5;<sup>CoV</sup>) values as defined in <xref ref-type="fig" rid="F11">Figure 11</xref>, along with their relative value with respect to the group-average CoV across the MR g-ratios using the reference B<sub>1</sub>+ field correction method:<inline-formula><mml:math id="INEQ349"><mml:mrow><mml:mfrac><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mi>C</mml:mi><mml:mi>o</mml:mi><mml:mi>V</mml:mi></mml:mrow></mml:msup><mml:mrow><mml:mi>C</mml:mi><mml:mi>o</mml:mi><mml:msubsup><mml:mi>V</mml:mi><mml:mrow><mml:mi>M</mml:mi><mml:mi>R</mml:mi></mml:mrow><mml:mrow><mml:mi>B</mml:mi><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:mfrac><mml:mo>&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:math></inline-formula>;<inline-formula><mml:math id="INEQ350"><mml:mrow><mml:mfrac><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mi>C</mml:mi><mml:mi>o</mml:mi><mml:mi>V</mml:mi></mml:mrow></mml:msup><mml:mrow><mml:mi>C</mml:mi><mml:mi>o</mml:mi><mml:msubsup><mml:mi>V</mml:mi><mml:mrow><mml:mi>M</mml:mi><mml:mi>R</mml:mi></mml:mrow><mml:mrow><mml:mi>B</mml:mi><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:mfrac><mml:mo rspace="5.8pt">&#x22C5;</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:math></inline-formula>.</italic></attrib>
</table-wrap-foot>
</table-wrap>
<fig id="F11" position="float">
<label>FIGURE 11</label>
<caption><p>Bland-Altman density plots of CoV<sub>g</sub>, CoV<sub>AVF</sub>, and CoV<sub>MVF</sub> for no correction (NO, top row) and UNICORT B<sub>1</sub>+ correction (UN, bottom row) against the reference method (B<sub>1</sub>+) (yellow indicates high density and blue low). The Bland-Altman plot depicts the differences between the tested parameter maps and the reference method (e.g., <inline-formula><mml:math id="INEQ354"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mi>i</mml:mi><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi>CoV</mml:mi><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi>CoV</mml:mi><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:mrow><mml:mtext>k</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula>) against their mean (e.g., <inline-formula><mml:math id="INEQ355"><mml:mrow><mml:msubsup><mml:mtext>mean</mml:mtext><mml:mi>i</mml:mi><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi>CoV</mml:mi><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msubsup><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow><mml:mrow><mml:mtext>g</mml:mtext></mml:mrow><mml:mrow><mml:mtext>k</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy="false">)</mml:mo><mml:msub><mml:mi/><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mn>2</mml:mn></mml:mfrac></mml:mrow></mml:math></inline-formula>) with k = {<italic>UN</italic>,<italic>NO</italic>} and <italic>i</italic> being the index of the <italic>i</italic><sup>th</sup> region. The bold white line represents the bias (<inline-formula><mml:math id="INEQ357"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:msubsup><mml:mo largeop="true" symmetric="true">&#x2211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mtext>N</mml:mtext></mml:mrow></mml:msubsup><mml:msubsup><mml:mi/><mml:mi>i</mml:mi><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>; N = number of voxels) and the dashed lines represent <inline-formula><mml:math id="INEQ358"><mml:msup><mml:mover accent="true"><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mo>&#x00AF;</mml:mo></mml:mover><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup></mml:math></inline-formula> the error (<inline-formula><mml:math id="INEQ360"><mml:mrow><mml:msup><mml:mi mathvariant="normal">&#x03F5;</mml:mi><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:mrow><mml:mrow><mml:mn>1.96</mml:mn><mml:mo>&#x22C5;</mml:mo><mml:mi>SD</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:msubsup><mml:mi mathvariant="normal">&#x03B4;</mml:mi><mml:mrow><mml:mtext>i</mml:mtext></mml:mrow><mml:mrow><mml:mtext>CoV</mml:mtext></mml:mrow></mml:msubsup><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mrow></mml:mrow></mml:math></inline-formula>]. The error and bias values are summarized in <xref ref-type="table" rid="T5">Table 5</xref>.</p></caption>
<graphic xlink:href="fnins-15-674719-g011.tif"/>
</fig>
<fig id="F12" position="float">
<label>FIGURE 12</label>
<caption><p>Scatter density plots of CoV<sub>g</sub> (left column), CoV<sub>AVF</sub> (middle column), and CoV<sub>MVF</sub> (right column), plotting values obtained with no correction (superscript: NO, top row) and with UNICORT B<sub>1</sub>+ correction (UN, bottom row) against values obtained by B<sub>1</sub>+ field map correction (superscript: B1). The unit slope line is plotted for orientation (dotted line). The dots in the scatter plots represent the WM voxels in the CoV maps in <xref ref-type="fig" rid="F10">Figure 10</xref> (yellow indicates high voxel density).</p></caption>
<graphic xlink:href="fnins-15-674719-g012.tif"/>
</fig>
</sec>
</sec>
<sec id="S4">
<title>Discussion</title>
<p>In this study, we showed that omitting the correction of the magnetization transfer saturation map (MT<sub>sat</sub>) for residual B<sub>1</sub> + effects introduces large error and bias in the MR g-ratio and the constituents (myelin and axon volume fractions, or in short MVF<sub>MR</sub> and AVF<sub>MR</sub>). We also demonstrated that this error and bias can be reduced by roughly a factor of three using the data-driven UNICORT B<sub>1</sub>+ correction (implemented in the hMRI toolbox, see text footnote 1) when a B<sub>1</sub>+ field measurement is unavailable.</p>
<sec id="S4.SS1">
<title>The Effect of Omitting the B<sub>1</sub>+ Field Measurement</title>
<p>MT<sub>sat</sub> have been often used as a proxy for the MVF<sub>MR</sub> in g-ratio weighted imaging (<xref ref-type="bibr" rid="B31">Mohammadi et al., 2015</xref>; <xref ref-type="bibr" rid="B8">Campbell et al., 2018</xref>; <xref ref-type="bibr" rid="B10">Ellerbrock and Mohammadi, 2018</xref>; <xref ref-type="bibr" rid="B18">Hori et al., 2018</xref>; <xref ref-type="bibr" rid="B21">Kamagata et al., 2019</xref>), because they are directly linked to the macromolecular pool with an intrinsic correction for underlying longitudinal relaxation time and B<sub>1</sub>+ field inhomogeneities effects (<xref ref-type="bibr" rid="B15">Helms et al., 2008</xref>). Despite the latter intrinsic correction for B<sub>1</sub>+ field inhomogeneities, we found that the residual B<sub>1</sub>+ effects on MT<sub>sat</sub> map were still observable. In particular, the bias and error of the MR g-ratio (g<sub>MR</sub>) was about &#x2212;89 and 37% higher, respectively, when omitting the B<sub>1</sub>+ correction. We found the same trend for MVF<sub>MR</sub> and AVF<sub>MR</sub>; while the error and bias were even larger for MVF<sub>MR</sub> when B<sub>1</sub>+ correction was omitted, it was smaller but still substantial for the AVF<sub>MR</sub>. We found that omitting B<sub>1</sub> + leads to a substantially higher (more than 10-fold) bias in the MR g-ratio and its constituents when compared to a test-retest analysis of our data (<xref ref-type="fig" rid="F7">Figure 7</xref> and <xref ref-type="table" rid="T3">Table 3</xref>). Also, the error due to omitting the B1+ correction was twice as large as the error observed in the test retest analysis for the MR g-ratio and the MVF, whereas for AVF the errors were similar. We expect that the high error will be of particular relevance for group studies because it can be regarded as an error that evolves when replacing the reference method with the alternative method. For comparison, age-related changes assessed by g-ratio weighted imaging (<xref ref-type="bibr" rid="B9">Cercignani et al., 2017</xref>; <xref ref-type="bibr" rid="B3">Berman et al., 2018</xref>) have been reported to vary between 30 and 100% (in absolute values: g<sub>MR</sub>0.02&#x2013;0.04 (<xref ref-type="fig" rid="F5">Figure 5</xref> in <xref ref-type="bibr" rid="B9">Cercignani et al., 2017</xref>). Consequently, the reported effect size of age-related changes would have become potentially undetectable if the B<sub>1</sub>+ field correction has been omitted in the study of <xref ref-type="bibr" rid="B9">Cercignani et al. (2017)</xref>. The B<sub>1</sub>+ effect is particularly relevant for the MR g-ratio method by <xref ref-type="bibr" rid="B9">Cercignani et al. (2017)</xref> that combined quantitative MT (<xref ref-type="bibr" rid="B12">Gloor et al., 2008</xref>) with NODDI, because the qMT method does not possess an intrinsic correction for B<sub>1</sub>+ field inhomogeneities as opposed to the MT<sub>sat</sub> methods used here. Note that we reported, for better intuition, the bias and error relative to the dynamic range of the parameters across the investigated white matter (WM) ROIs (the dynamic range of g<sub>MR</sub> is &#x25B3;<sub>DR</sub> = 0.046; the absolute bias and error can be found in <xref ref-type="table" rid="T4">Table 4</xref>).</p>
<p>To reduce this source of bias and error, we propose a data-driven approach to correct for B<sub>1</sub>+ field inhomogeneities when no B<sub>1</sub>+ field measurement is available. To this end, we used UNICORT to estimate the B<sub>1</sub>+ field (<xref ref-type="bibr" rid="B47">Weiskopf et al., 2011</xref>). We found that using the UNICORT-estimated B<sub>1</sub>+ field to correct residual B<sub>1</sub>+ field inhomogeneities in MT<sub>sat</sub> reduces at the group level the bias and error in the MR g-ratio and its constituents by roughly a factor of three. However, the UNICORT estimated B<sub>1</sub>+ inhomogeneity can be erroneous with the error varying across subjects. To assess this variability, we estimated coefficient-of-variance (CoV) maps of g<sub>MR</sub>, AVF<sub>MR</sub>, and MVF<sub>MR</sub> for all three methods. In general, an increased CoV can be found at tissue boundaries (e.g., cerebral spinal fluid to WM) due to slight misregistration between the maps of axonal and myelin markers and/or imperfect normalization (<xref ref-type="fig" rid="F10">Figure 10</xref>). Additionally, we found a strong increase in the bias and error of the CoV of MVF maps (increase in bias: 11% and in error: 18%) when UNICORT B<sub>1</sub>+ correction was used as compared to no correction. The CoV of g<sub>MR</sub> and AVF<sub>MR</sub> did not show a consistent trend: while the bias decreased, the error increased for both parameters. In other words, the UNICORT B<sub>1</sub>+ correction leads to higher accuracy in the g-ratio and its constituents but comes at the cost of a lower precision in MVF.</p>
</sec>
<sec id="S4.SS2">
<title>G-ratio, Myelin, and Axonal Volume Fraction Across the White Matter</title>
<p>Our <inline-formula><mml:math id="INEQ387"><mml:msubsup><mml:mtext>g</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> and <inline-formula><mml:math id="INEQ388"><mml:msubsup><mml:mtext>AVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> across the white matter were within the range of the reported values of previous studies (g<sub>MR</sub>: 0.64&#x2013;0.76; AVF<sub>MR</sub>: 0.26&#x2013;0.43 in (<xref ref-type="bibr" rid="B9">Cercignani et al., 2017</xref>; <xref ref-type="bibr" rid="B3">Berman et al., 2018</xref>). The range of <inline-formula><mml:math id="INEQ391"><mml:msubsup><mml:mtext>MVF</mml:mtext><mml:mrow><mml:mtext>MR</mml:mtext></mml:mrow><mml:mi>B1</mml:mi></mml:msubsup></mml:math></inline-formula> was in the upper half of previously reported values (0.17&#x2013;0.42 in <xref ref-type="bibr" rid="B9">Cercignani et al., 2017</xref>). Our slightly higher MVF<sub>MR</sub> values might be due to differences in the calibration approach: while we calculated the reference MVF<sub>REF</sub> from previously published <italic>ex-vivo</italic> histology data (<xref ref-type="bibr" rid="B13">Graf von Keyserlingk and Schramm, 1984</xref>), <xref ref-type="bibr" rid="B9">Cercignani et al. (2017)</xref>, used a reference from previously published <italic>ex-vivo</italic> histology g-ratio data in the corpus callosum and <xref ref-type="bibr" rid="B3">Berman et al. (2018)</xref>, did not perform any calibration assuming that macromolecular tissue volume and MVF<sub>MR</sub> are equal. An error in the calibration constant can lead to a bias in the MVF estimates which in turn leads to an error and bias in the MR g-ratio (<xref ref-type="bibr" rid="B8">Campbell et al., 2018</xref>).</p>
</sec>
<sec id="S4.SS3">
<title>Confounding Factors</title>
<p>As this study calculates the <italic>in-vivo</italic> MR g-ratio, there is no histological data available from the participants of this study, which could be used for calibration or as a gold standard reference. For calibration of MT<sub>sat</sub> to MVF<sub>MR</sub>, we estimated the histological MVF (MVF<sub>hist</sub>) from published <italic>ex-vivo</italic> data within the human medulla oblongata (<xref ref-type="bibr" rid="B13">Graf von Keyserlingk and Schramm, 1984</xref>). Since the reference MVF<sub>hist</sub> and the calibrated MT<sub>sat</sub> map were taken from different subjects, this might introduce a systematic bias in the MR g-ratio. However, since we found a relatively good agreement between our g<sub>MR</sub>, AVF<sub>MR</sub>, and MVF<sub>MR</sub> values with previously reported values obtained by a different calibration approach (<xref ref-type="bibr" rid="B9">Cercignani et al., 2017</xref>; <xref ref-type="bibr" rid="B3">Berman et al., 2018</xref>), we expect that it had a small effect on the results. Moreover, we focused on the effect of omitting B<sub>1</sub>+ correction, which will lead to additional inaccuracies in g-ratio weighted imaging, independent of the quality of the calibration.</p>
<p>Although, not reported in previous NODDI-based g-ratio mapping studies (<xref ref-type="bibr" rid="B41">Stikov et al., 2015</xref>; <xref ref-type="bibr" rid="B9">Cercignani et al., 2017</xref>; <xref ref-type="bibr" rid="B20">Jung et al., 2017</xref>; <xref ref-type="bibr" rid="B28">Mancini et al., 2017</xref>; <xref ref-type="bibr" rid="B10">Ellerbrock and Mohammadi, 2018</xref>; <xref ref-type="bibr" rid="B18">Hori et al., 2018</xref>), we found that the intra-cellular volume fraction (&#x03BD;<sub><italic>icvf</italic></sub>) determined with NODDI tends to be biased at small signal-to-noise ratios (SNR &#x003C; 39), resulting in a ceiling effect, i.e., &#x03BD;<sub>icvf</sub> &#x2248; 1. To avoid a corresponding bias in g<sub>MR</sub> (and AVF<sub>MR</sub>), we restricted the analysis to regions with sufficiently high SNR (<xref ref-type="fig" rid="F3">Figure 3</xref>). To investigate whether our findings generalize to low-SNR regions as well, we performed an additional Bland-Altman analysis of MVF<sub>MR</sub> in whole-WM ROIs. To this end, a larger set of ROIs was used covering the entire white matter. Although the bias was smaller for the whole-WM as compared to the high-SNR ROI analysis, we found the same trend: the error and bias were reduced when using UNICORT B<sub>1</sub>+ correction relative to no correction. Note that the smaller bias for the whole-WM analysis is most probably an artifact of the calibration procedure. Since the ROI used for calibration was not part of the high-SNR ROIs but was part of the whole-WM ROIs, we think it could have reduced the bias in the whole-WM ROI analysis as compared to the high-SNR analysis.</p>
<p>We note that the presented results were based on a customized B<sub>1</sub>+ mapping method (<xref ref-type="bibr" rid="B26">Lutti et al., 2010</xref>). Using vendor specific protocols for B<sub>1</sub>+ and MT<sub>sat</sub> mapping may influence the results (<xref ref-type="bibr" rid="B24">Leutritz et al., 2020</xref>). Moreover, the calibration factor in Equation (1) may have to be recalibrated for different MT-pulses.</p>
<p>Future studies should investigate the effect of B<sub>1</sub>+ correction on MR g-ratio mapping when using alternative biomarkers to estimate AVF<sub>MR</sub> and MVF<sub>MR</sub> (e.g., <xref ref-type="bibr" rid="B10">Ellerbrock and Mohammadi, 2018</xref>). Moreover, there are alternative B<sub>1</sub>+ mapping approaches available which might vary in precision (<xref ref-type="bibr" rid="B26">Lutti et al., 2010</xref>) and therefore can affect the MR g-ratio values. However, the differences in the precision of these methods are in the order of few percentage and thus much smaller than the effect of omitting the B<sub>1</sub>+ field or using the data-driven UNICORT B<sub>1</sub>+ estimate (<xref ref-type="bibr" rid="B47">Weiskopf et al., 2011</xref>).</p>
</sec>
</sec>
<sec id="S5">
<title>Conclusion</title>
<p>In this study, we assessed the effect of B<sub>1</sub>+ correction on the accuracy of MR g-ratio as well as axonal and myelin volume fraction based on MT<sub>sat</sub> and NODDI. Our results demonstrate that B<sub>1</sub>+ correction via a measured B<sub>1</sub>+ field map is the method of choice. If the B<sub>1</sub>+ field map cannot be acquired, we propose the retrospective, data-driven UNICORT B<sub>1</sub>+ correction to estimate and correct for B<sub>1</sub>+ field inhomogeneities, which reduces the error and bias by a factor of three. UNICORT is implemented in the free and open-source hMRI toolbox (see text footnote 1).</p>
</sec>
<sec id="S6">
<title>Data Availability Statement</title>
<p>The datasets presented in this article are not readily available because the data that support the findings of this study are available on request from the corresponding author. The data have not been made freely available on the internet due to privacy or ethical restrictions. Requests to access the datasets should be directed to corresponding author.</p>
</sec>
<sec id="S7">
<title>Ethics Statement</title>
<p>The studies involving human participants were reviewed and approved by the &#x00C4;rztekammer Hamburg. The patients/participants provided their written informed consent to participate in this study.</p>
</sec>
<sec id="S8">
<title>Author Contributions</title>
<p>SM and TE contributed to the conception and design of the study, performed statistical analysis and MRI processing, and wrote the first draft of the manuscript. All authors contributed substantially to revising the manuscript critically for intellectual content and have approved the submitted version.</p>
</sec>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<fn-group>
<fn fn-type="financial-disclosure">
<p><bold>Funding.</bold> This project was by the ERA-NET NEURON (hMRIofSCI), the Federal Ministry of Education and Research (BMBF; 01EW1711A and B), and the German Research Foundation (DFG Priority Program 2041 &#x201C;Computational Connectomics,&#x201D; (AL 1156/2-1;GE 2967/1-1; MO 2397/5-1; MO 2249/3&#x2013;1), DFG Emmy Noether Stipend: MO 2397/4-1), and the Forschungszentrums Medizintechnik Hamburg (fmthh; grant 01fmthh2017). GH was supported by the Swedish Research Council (NT 2014-6193). PF was funded by a SNF Eccellenza Professorial Fellowship grant (PCEFP3_181362/1), and the European Union&#x2019;s Horizon 2020 research, innovation programme (grant agreement no 634541). EB received funding from the European Structural and Investment Fund/European Regional Development Fund and the Belgian Walloon Government, project BIOMED-HUB (programme 2014&#x2013;2020). Our gratitude extends also to J&#x00FC;rgen Finsterbusch for support on the MR side, to the University of Minnesota Centre for Magnetic Resonance Research for providing the image reconstruction algorithm for the simultaneous multislice acquisitions.</p>
</fn>
</fn-group>
<sec id="S10" sec-type="supplementary material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fnins.2021.674719/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fnins.2021.674719/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Image_1.pdf" id="FS1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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<p><ext-link ext-link-type="uri" xlink:href="http://www.hMRI.info">www.hMRI.info</ext-link></p></fn>
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