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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Neurosci.</journal-id>
<journal-title>Frontiers in Neuroscience</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Neurosci.</abbrev-journal-title>
<issn pub-type="epub">1662-453X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fnins.2017.00451</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Neuroscience</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Axonal Degeneration during Aging and Its Functional Role in Neurodegenerative Disorders</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Salvadores</surname> <given-names>Natalia</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/458917/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Sanhueza</surname> <given-names>Mario</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/415960/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Manque</surname> <given-names>Patricio</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Court</surname> <given-names>Felipe A.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Center for Integrative Biology, Faculty of Sciences, Universidad Mayor</institution> <country>Santiago, Chile</country></aff>
<aff id="aff2"><sup>2</sup><institution>Fondap Geroscience Center for Brain Health and Metabolism</institution> <country>Santiago, Chile</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Samuel David Crish, Northeast Ohio Medical University, United States</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Alba Di Pardo, Centre for Neurogenetics and Rare Diseases, Italy; Sabine Gilch, University of Calgary, Canada</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Felipe A. Court <email>felipe.court&#x00040;umayor.cl</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Neurodegeneration, a section of the journal Frontiers in Neuroscience</p></fn></author-notes>
<pub-date pub-type="epub">
<day>04</day>
<month>09</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>11</volume>
<elocation-id>451</elocation-id>
<history>
<date date-type="received">
<day>07</day>
<month>06</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>25</day>
<month>07</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2017 Salvadores, Sanhueza, Manque and Court.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Salvadores, Sanhueza, Manque and Court</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p>Aging constitutes the main risk factor for the development of neurodegenerative diseases. This represents a major health issue worldwide that is only expected to escalate due to the ever-increasing life expectancy of the population. Interestingly, axonal degeneration, which occurs at early stages of neurodegenerative disorders (ND) such as Alzheimer&#x00027;s disease, Amyotrophic lateral sclerosis, and Parkinson&#x00027;s disease, also takes place as a consequence of normal aging. Moreover, the alteration of several cellular processes such as proteostasis, response to cellular stress and mitochondrial homeostasis, which have been described to occur in the aging brain, can also contribute to axonal pathology. Compelling evidence indicate that the degeneration of axons precedes clinical symptoms in NDs and occurs before cell body loss, constituting an early event in the pathological process and providing a potential therapeutic target to treat neurodegeneration before neuronal cell death. Although, normal aging and the development of neurodegeneration are two processes that are closely linked, the molecular basis of the switch that triggers the transition from healthy aging to neurodegeneration remains unrevealed. In this review we discuss the potential role of axonal degeneration in this transition and provide a detailed overview of the literature and current advances in the molecular understanding of the cellular changes that occur during aging that promote axonal degeneration and then discuss this in the context of ND.</p></abstract>
<kwd-group>
<kwd>axonal degeneration</kwd>
<kwd>aging</kwd>
<kwd>neurodegeneration</kwd>
<kwd>disease models</kwd>
<kwd>axonopathy</kwd>
</kwd-group>
<counts>
<fig-count count="1"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="328"/>
<page-count count="21"/>
<word-count count="20908"/>
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</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<sec>
<title>Neurodegeneration during aging</title>
<p>The aging process is part of life and as such, it cannot be circumvented. However, much effort is currently devoted to understand the molecular changes that occur during aging and cause pathologies, in an attempt of being able to modify them to have the possibility of living a healthier aging.</p>
<p>The effects of aging on the brain are multiple and importantly, age constitutes the main risk factor for the development of neurodegenerative disorders (NDs) such as Alzheimer&#x00027;s disease (AD), Parkinson&#x00027;s disease (PD), and amyotrophic lateral sclerosis (ALS), which are characterized by progressive neuronal death and loss of specific neuronal populations. Considering the constant increase in life expectancy, NDs are nowadays an important problem for the society and our efforts to understand the mechanisms underlying these disorders has not been sufficient to provide a definitive help to the millions of patients worldwide.</p>
<p>For a better comprehension of the molecular and cellular changes that occur during aging, seven pillars of aging were defined, which are common processes involved in most chronic disorders that take place in an aging organism. These seven pillars are proteostasis, adaptation to stress, inflammation, stem cells and regeneration, epigenetics, metabolism, and macromolecular damage (Kennedy et al., <xref ref-type="bibr" rid="B134">2014</xref>). Notably, changes in these cellular events are common to most NDs, suggesting that similar mechanisms might at least partially explain different age-related diseases. Even though NDs share phenotypic commonalities such as protein aggregation, cellular stress responses, and failure in RNA metabolism, it is still not clear why heterogeneous responses to similar genetic and environmental stimuli take place in different neuronal populations. Understanding the molecular basis of these pillars of aging and the timeframe in which they are activated could help us to tackle pre-symptomatically NDs and avoid irreversible cellular changes.</p>
<p>Axonal degeneration, which occurs at early stages of NDs, also takes place as a consequence of normal aging. Indeed, many cellular processes that are altered with advanced age have shown to contribute to axonal pathology. Importantly, the degeneration of axons represents an early event during the development of NDs, preceding both cell death and the onset of clinical symptoms, which has important therapeutic implications. Although, the molecular basis of the transition that makes an individual to develop neurodegeneration with advanced age is currently unknown, increasing evidence support the potential role of axonal degeneration in this transition, which is the focus of this review. An outline of the mechanisms associated to axonal degeneration is presented below, followed by a detailed overview of the literature and current advances in the molecular understanding of the cellular changes that occur during aging and its relationship with axonal degeneration.</p>
</sec>
<sec>
<title>Axonal degeneration overview</title>
<p>The process of axonal degeneration is an essential developmental event that consists in the selective destruction of axons (Schuldiner and Yaron, <xref ref-type="bibr" rid="B256">2014</xref>). Moreover, axonal degeneration also occurs as a consequence of aging and represents a feature of NDs, constituting an important contributor to neuronal dysfunction (Neukomm and Freeman, <xref ref-type="bibr" rid="B213">2014</xref>). Notably, the evidence indicates that axonal degeneration is an early event in NDs, taking place previous to neuronal cell death (Deckwerth and Johnson, <xref ref-type="bibr" rid="B56">1994</xref>; Adalbert and Coleman, <xref ref-type="bibr" rid="B1">2013</xref>).</p>
<p>Axonal degeneration is an evolutionary conserved process that can be activated by different stimuli including mechanical damage, axonal transport defects or by drugs used for chemotherapy. Although, the exact molecular and cellular pathways by which axonal degeneration occurs remain to be fully clarified, key contributing factors have been identified in the last decade and crucial findings have contributed to elucidate the mechanisms involved. Important clues have been obtained by studying Wallerian degeneration (WD), which correspond to degeneration of isolated axon after their mechanical transection. Furthermore, studies in the mouse strain Wld<sup>S</sup>, which presents delayed axonal degeneration after injury, has been crucial to understand the mechanisms associated to axonal degeneration, and its functional relevance in NDs (Mack et al., <xref ref-type="bibr" rid="B171">2001</xref>). After nerve transection, desomatized wild type axons undergo three phases: a latent phase, axonal fragmentation and axonal disintegration. The latent phase stills poorly understood but it is known that axons remain apparently normal for 1&#x02013;2 days in mice after nerve injury (Court and Coleman, <xref ref-type="bibr" rid="B48">2012</xref>), and can still conduct action potential (Moldovan et al., <xref ref-type="bibr" rid="B200">2009</xref>). In the last stage, all the structures inside the axon are degraded. Disintegration of axonal cytoskeleton is followed by myelin degradation and macrophage infiltration that clear cell debris (Coleman, <xref ref-type="bibr" rid="B45">2005</xref>).</p>
<p>Genetic analysis of the Wld<sup>S</sup> mice unveiled that this natural mutation corresponds to a neomorphic one, that overexpresses a chimeric protein formed by fusion of the N-terminus of the E4 ubiquitin ligase Ube4b with the complete sequence of nicotinamide mono nucleotide adenylyltransferase 1 (Nmnat1; Coleman and Freeman, <xref ref-type="bibr" rid="B46">2010</xref>). Axonal protection observed by up-regulating Nmnat1 is linked to mitochondrial metabolism (Avery et al., <xref ref-type="bibr" rid="B9">2009</xref>; Fang et al., <xref ref-type="bibr" rid="B72">2012</xref>), and the main mechanism does not seem to be the enzymatic production of NAD by Nmnat1 but most likely the action of downstream targets of this protein (Sorci et al., <xref ref-type="bibr" rid="B272">2007</xref>; Coleman and Freeman, <xref ref-type="bibr" rid="B46">2010</xref>). Recently, a loss-of-function mutation in the Sterile alpha and Toll/interleukin receptor (TIR) motif-containing protein 1 (Sarm1) was found, which cell-autonomously suppresses WD, confirming that this process is indeed an active program (Osterloh et al., <xref ref-type="bibr" rid="B219">2012</xref>). SARM1 is a conserved mediator of WD, acting through the dimerization of the TIR domain to rapidly deplete NAD<sup>&#x0002B;</sup> in injured axons to trigger degeneration (Gerdts et al., <xref ref-type="bibr" rid="B92">2015</xref>; Summers et al., <xref ref-type="bibr" rid="B281">2016</xref>; Essuman et al., <xref ref-type="bibr" rid="B70">2017</xref>). This mechanism explains NMNAT1 suppression of WD as this protein blocks the injury-induced NAD<sup>&#x0002B;</sup> consumption caused by SARM1, a mechanism that seems to be more important than the altered NAD<sup>&#x0002B;</sup> production caused by NMNAT1 (Sasaki et al., <xref ref-type="bibr" rid="B255">2016</xref>). These findings open the possibility to identify novel molecules actively involved in the process that could lead ultimately to a deeper characterization and novel therapeutic targets for neurodegeneration.</p>
<p>We have demonstrated that mitochondrial dysfunction is a key process associated to axonal degeneration (Barrientos et al., <xref ref-type="bibr" rid="B12">2011</xref>). The degeneration of axons was shown to be associated to the formation of the mitochondrial permeability transition pore (mPTP) between the inner and outer mitochondrial membrane. mPTP formation triggers the mitochondrial permeability transition (mPT), which leads to an increase in axonal reactive oxygen species (ROS) followed by intra-axonal calcium release (Calixto et al., <xref ref-type="bibr" rid="B25">2012</xref>; Villegas et al., <xref ref-type="bibr" rid="B298">2014</xref>). Interestingly, blocking mPTP either pharmacologically or genetically, by removal of the mPTP component Cyclophilin D (CypD), significantly delays axonal degeneration (Barrientos et al., <xref ref-type="bibr" rid="B12">2011</xref>). Notably, formation of the mPTP has been linked to the pathogenesis of NDs including AD (Du et al., <xref ref-type="bibr" rid="B63">2008</xref>), PD (Martin et al., <xref ref-type="bibr" rid="B185">2014</xref>), and ALS (Martin et al., <xref ref-type="bibr" rid="B184">2009</xref>) and has been suggested as a potential therapeutic target for these diseases.</p>
<p>Increasing evidence suggest that axonal degeneration occurs before cell body loss and notably, previous to the onset of clinical symptoms in different models of age-related diseases including ALS (Dadon-Nachum et al., <xref ref-type="bibr" rid="B53">2010</xref>), PD (Tagliaferro and Burke, <xref ref-type="bibr" rid="B284">2016</xref>), and AD (Adalbert and Coleman, <xref ref-type="bibr" rid="B1">2013</xref>). Hence, the understanding of the molecular and cellular mechanisms underlying this potentially reversible phase is critical for the development of therapeutic strategies aimed at the prevention and intervention of these disorders. Multiple molecular and cellular changes that occur during the process of aging can contribute to the accumulation of axonal damage, which is a prominent histopathological feature of the aging brain. Importantly, these cellular changes are common to almost all NDs, suggesting that similar mechanisms participate in the onset and development of these disorders. In the following section, we discuss how each of these changes contribute to the alteration of axonal integrity.</p>
</sec>
</sec>
<sec id="s2">
<title>Molecular mechanisms involved in aging and their relationship with axonal degeneration</title>
<p>The urgency to extend healthspan, the period of healthy life preceding the development of age-related chronic diseases, has been recently highlighted. From this perspective, the field of Geroscience has invested increasing efforts to understand the mechanisms that underlie lifespan alteration, linking aging, and chronic diseases with the final aim of developing therapies for age-associated diseases (Kennedy et al., <xref ref-type="bibr" rid="B134">2014</xref>). In this section we will review latest findings on each of the seven pillars of aging (Figure <xref ref-type="fig" rid="F1">1</xref>) with the aim of understanding whether they are related to axonal degeneration and how this event can be shifting healthy aging toward pathological aging with prevalence of chronic and neurodegenerative diseases.</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>The seven pillars of aging in the context of neuronal and axonal degeneration. Each pillar associated to the aging process is represented in a colored box. Most relevant pathways and molecules misregulated during aging are highlighted in each box, altogether with the consequences in neuronal senescence and axonal degeneration. A misregulated response to macromolecular damage and inflammation lead to increased ROS and a decrease in available NAD<sup>&#x0002B;</sup>, triggering axonal degeneration. Aging also decreases the number of neuronal stem cells (NSCs) and their regenerative capability. Caloric restriction works in a protective way against aging with a mechanism opposite to the one observed with the age-linked disruption of circadian rhythm. Altered DNA modification and repair trigger pro-senescence phenotypes that lead to neuronal death, same phenotype induced by decrease of response to stress stimuli and oxidative damage.</p></caption>
<graphic xlink:href="fnins-11-00451-g0001.tif"/>
</fig>
<sec>
<title>Adaptation to stress</title>
<p>In response to harmful stimuli, protective mechanisms that trigger adaptive responses can be activated to maintain cell homeostasis. If such noxious stimuli persist, programmed cell death is usually activated to eliminate damaged cells (Fulda et al., <xref ref-type="bibr" rid="B86">2010</xref>). Whether cells react by triggering protective or destructive pathways depends on different factors including the nature and extent of the stress. Cells can respond to harmful stimuli in a number of ways and these adaptive responses include, among others, antioxidant defense mechanisms, the unfolded protein response (UPR), the heat-shock response and the DNA damage response (Fulda et al., <xref ref-type="bibr" rid="B86">2010</xref>). As an example, it has been shown that following hypoxic injury, activation of the hypoxia inducible factor 1 (HIF-1) induces the expression of several genes that can promote cell survival and tissue adaptation by increasing blood supply and oxygen delivery to the injured tissue (Majmundar et al., <xref ref-type="bibr" rid="B179">2010</xref>).</p>
<p>Compelling evidence indicate that the capability to induce an effective response following environmental and cellular injury decreases with the progression of aging. Hence, as organisms age, along with a general deterioration of cellular function, there is a decline in the stress responses that promote homeostatic repair. Examples of this diminished capability to compensate the altered cellular homeostasis include diminished HIF-1 activity (Majmundar et al., <xref ref-type="bibr" rid="B179">2010</xref>), decreased heat shock response (Fargnoli et al., <xref ref-type="bibr" rid="B73">1990</xref>) and altered response against DNA damage (Druzhyna et al., <xref ref-type="bibr" rid="B62">2008</xref>). Notably, the concept of hormesis has emerged in the context of homeostasis, associated to a phenomenon in which an organism that has been subjected to sub-lethal stress such as caloric restriction, can engage signaling pathways that increase the neuronal capabilities of stress resistance against oxidative stress, mitochondrial disruption, protein misfolding, and DNA damage, thus reducing physiological decline and leading to life span extension (Mattson, <xref ref-type="bibr" rid="B190">2008</xref>). By instance, studies performed in different models including mice (Miller et al., <xref ref-type="bibr" rid="B197">2017</xref>), monkeys (Mattison et al., <xref ref-type="bibr" rid="B189">2017</xref>), and humans (Prehn et al., <xref ref-type="bibr" rid="B232">2016</xref>) have demonstrated that dietary energy restriction can protect against brain degeneration, promote cognitive improvement and increase life span (discussed in more detail in Section Metabolism).</p>
<p>Importantly, studies aimed at determine the effect of caloric restriction in NDs have shown positive outcomes using models of AD (Wu et al., <xref ref-type="bibr" rid="B313">2008</xref>), PD (Maswood et al., <xref ref-type="bibr" rid="B188">2004</xref>), and Huntington disease (HD; Duan et al., <xref ref-type="bibr" rid="B64">2003</xref>). Several mechanisms have been demonstrated to contribute to this protective stress response and includes the Ca<sup>2&#x0002B;</sup>&#x02013;cyclic AMP response element-binding protein (CREB) pathway, the sirtuin&#x02013;forkhead box O (FOXO) pathway and the nuclear regulatory factor 2 (NRF2)&#x02013;antioxidant response element (ARE) pathway (Mattson, <xref ref-type="bibr" rid="B190">2008</xref>; Stranahan and Mattson, <xref ref-type="bibr" rid="B276">2012</xref>). Similarly, the experimental activation of other adaptive pathways, with the purpose of testing their potential therapeutic benefit for different NDs, has been recently investigated. In this line, the role of UPR activation, which is a main player of the proteostasis network, in the development of NDs such as AD (Duran-Aniotz et al., <xref ref-type="bibr" rid="B66">2017</xref>) and PD (Valdes et al., <xref ref-type="bibr" rid="B290">2014</xref>) has revealed interesting results. Recent evidence has shown an important link between the UPR and axonal degeneration and will be discussed in detail in the following section. Additionally, autophagy constitutes an essential component of the adaptive response to cell stress that helps to maintain cellular homeostasis and quality control. This mechanism is essential to regulate the axonal proteome and maintain axonal homeostasis by eliminating damaged organelles and protein aggregates (Komatsu et al., <xref ref-type="bibr" rid="B143">2007</xref>; Maday and Holzbaur, <xref ref-type="bibr" rid="B173">2014</xref>). However, the experimental induction of autophagy can result in protective or harmful effects to axons, which appears to depend on the context of the experimental setting. Indeed, there are reports demonstrating detrimental effects of autophagy activation on axonal integrity (Park et al., <xref ref-type="bibr" rid="B222">2008</xref>; Kim et al., <xref ref-type="bibr" rid="B139">2009</xref>; Liu et al., <xref ref-type="bibr" rid="B164">2010</xref>; Cheng et al., <xref ref-type="bibr" rid="B33">2011</xref>; Wakatsuki et al., <xref ref-type="bibr" rid="B301">2017</xref>), while other studies have shown a protective effect (Komatsu et al., <xref ref-type="bibr" rid="B143">2007</xref>; Launay et al., <xref ref-type="bibr" rid="B151">2014</xref>; He et al., <xref ref-type="bibr" rid="B107">2016</xref>). Despite the opposed outcomes, these studies strongly suggest that autophagy represent an important process involved in axonal maintenance and degeneration.</p>
</sec>
<sec>
<title>Proteostasis</title>
<p>The maintenance of protein homeostasis (referred to as proteostasis), which involve the correct synthesis, folding, trafficking, secretion, and degradation of proteins, relies on a network of different mechanisms and pathways that include the UPR, the heat-shock response, the autophagy pathway, the ubiquitin&#x02013;proteasome system, chaperones and the endoplasmic reticulum (ER)-associated degradation machinery (ERAD). This cellular machinery maintains the equilibrium of the proteome and prevents the accumulation of misfolded proteins (Labbadia and Morimoto, <xref ref-type="bibr" rid="B147">2015</xref>).</p>
<p>Compelling evidence has demonstrated a decline in the homeostatic capacity of the proteostasis network with increasing age. By instance, several studies have demonstrated that the levels of chaperones are markedly decreased with age in different organs including the brain (Paz Gavil&#x000E1;n et al., <xref ref-type="bibr" rid="B226">2006</xref>; Hussain and Ramaiah, <xref ref-type="bibr" rid="B118">2007</xref>; Naidoo et al., <xref ref-type="bibr" rid="B210">2008</xref>; Walther et al., <xref ref-type="bibr" rid="B302">2015</xref>). Chaperoning activity can also be influenced by age-related changes such as energy failure due to mitochondrial damage, which affect the function of ATP-dependent chaperones (Brehme et al., <xref ref-type="bibr" rid="B20">2014</xref>). Additionally, a number of studies have demonstrated aging-associated defects on autophagy (Cuervo and Dice, <xref ref-type="bibr" rid="B51">2000</xref>; Lipinski et al., <xref ref-type="bibr" rid="B161">2010</xref>; Rubinsztein et al., <xref ref-type="bibr" rid="B246">2011</xref>) and proteasome activity (Bulteau et al., <xref ref-type="bibr" rid="B22">2002</xref>; Ferrington, <xref ref-type="bibr" rid="B76">2005</xref>; Dasuri et al., <xref ref-type="bibr" rid="B54">2009</xref>; Keller et al., <xref ref-type="bibr" rid="B133">2015</xref>), which contribute to the decline of brain proteostasis. Notably, there is evidence indicating that either manipulating the proteostasis network or preventing its deterioration, can induce a slowdown in the aging progression in different animal models (Ruan et al., <xref ref-type="bibr" rid="B245">2002</xref>; Henis-Korenblit et al., <xref ref-type="bibr" rid="B108">2010</xref>; Kruegel et al., <xref ref-type="bibr" rid="B145">2011</xref>; Vilchez et al., <xref ref-type="bibr" rid="B297">2012</xref>; Owusu-Ansah et al., <xref ref-type="bibr" rid="B220">2013</xref>; Labunskyy et al., <xref ref-type="bibr" rid="B148">2014</xref>). As an example, overexpression of the mitochondrial heat shock protein 22 leads to increased lifespan in <italic>Drosophila</italic> (Morrow, <xref ref-type="bibr" rid="B204">2004</xref>). Another study showed that activation of autophagy by overexpression of Atg5 was able to extend the lifespan of mice (Pyo et al., <xref ref-type="bibr" rid="B235">2013</xref>). Similarly, enhancement and activation of the 20S proteasome in <italic>Caenorhabditis elegans</italic>, resulted in life span extension (Chondrogianni et al., <xref ref-type="bibr" rid="B36">2015</xref>).</p>
<p>A common feature of aging and NDs is the misfolding and accumulation of protein aggregates in the brain, a slow process that initiates decades before clinical symptoms manifest. The exact cause that leads to protein aggregation in the brain is unknown, although deregulation of protein homeostasis through perturbation of the ER has been shown to be involved (Mart&#x000ED;nez et al., <xref ref-type="bibr" rid="B187">2017</xref>). The build-up of misfolded proteins at the ER, a condition known as ER stress, triggers the UPR signaling pathway in order to restore proteostasis and promote cell survival (Sidrauski and Walter, <xref ref-type="bibr" rid="B264">1997</xref>; Harding et al., <xref ref-type="bibr" rid="B104">1999</xref>; Haze et al., <xref ref-type="bibr" rid="B106">1999</xref>). Disruption of this adaptive pathway has been associated with advanced age and it has emerged as a key contributor to the pathogenesis of NDs such as AD (Ciss&#x000E9; et al., <xref ref-type="bibr" rid="B44">2010</xref>, <xref ref-type="bibr" rid="B43">2016</xref>; Li et al., <xref ref-type="bibr" rid="B156">2013</xref>), prion disease (Moreno et al., <xref ref-type="bibr" rid="B203">2012</xref>, <xref ref-type="bibr" rid="B202">2013</xref>), ALS (Hetz et al., <xref ref-type="bibr" rid="B111">2009</xref>), PD (Imai et al., <xref ref-type="bibr" rid="B119">2001</xref>; Cooper et al., <xref ref-type="bibr" rid="B47">2006</xref>; Valdes et al., <xref ref-type="bibr" rid="B290">2014</xref>), and HD (Vidal et al., <xref ref-type="bibr" rid="B295">2012</xref>; Zuleta et al., <xref ref-type="bibr" rid="B328">2012</xref>).</p>
<p>Recent evidence indicates that activation of ER stress plays a critical role in the neuronal response to axonal injury in both peripheral and CNSs (Smith and Mallucci, <xref ref-type="bibr" rid="B268">2016</xref>). Indeed, numerous studies have shown activation of the UPR upon axonal damage in different type of cells including Schwann cells (Mantuano et al., <xref ref-type="bibr" rid="B181">2011</xref>), motoneurons (Penas et al., <xref ref-type="bibr" rid="B227">2011</xref>), retinal ganglion cells (Hu et al., <xref ref-type="bibr" rid="B117">2012</xref>), and in sensory neurons of the dorsal root ganglia (Ying et al., <xref ref-type="bibr" rid="B322">2015</xref>). Interestingly, pharmacological and genetic manipulation of components of the UPR pathway has shown to induce cognitive improvement and motor recovery in disease and nervous system injury models, respectively (Li et al., <xref ref-type="bibr" rid="B156">2013</xref>; Valenzuela et al., <xref ref-type="bibr" rid="B292">2016</xref>). By instance, studies from our group have demonstrated a protective role of the transcription factor X-Box-binding protein 1 (XBP1), a major regulator of the UPR, following nervous system damage. After spinal cord injury, XBP1-deficient mice presented significant impairment of locomotor recovery when compared with control mice. Notably, local administration of active XBP1 by gene therapy to the injured area enhanced locomotor recovery (Valenzuela et al., <xref ref-type="bibr" rid="B291">2012</xref>). Looking at the functional role of the UPR in locomotor recovery following peripheral nerve injury, our group demonstrated that genetic ablation of Xbp1 induced a delay in locomotor recovery after injury. Conversely, overexpression of XBP1s in transgenic mice and local XBP1s gene transfer to neurons of wild-type mice, increased axonal regeneration and locomotor recovery (O&#x000F1;ate et al., <xref ref-type="bibr" rid="B216">2016</xref>). Additionally, the protective effects of XBP1 activation on neuronal death, following axonal injury, were shown in a model of optic nerve crush. Axotomy triggered transient activation of the inositol-requiring enzyme 1&#x003B1; (IRE1&#x003B1;)/XBP1 pathway, and overexpression of the transcription factor strongly protected neurons from apoptosis (Hu et al., <xref ref-type="bibr" rid="B117">2012</xref>). In a more recent study, using mouse models of traumatic optic nerve injury and glaucoma, the same group demonstrated that inhibition of eukaryotic translation initiation factor 2&#x003B1;-C/EBP homologous protein and XBP1 activation synergistically protect retinal ganglion cell axons and preserve visual function (Yang et al., <xref ref-type="bibr" rid="B319">2016</xref>). Together, this evidence highlights the important role of the UPR signaling pathway in the processes of axonal degeneration and regeneration.</p>
</sec>
<sec>
<title>Inflammation</title>
<p>Even though activation of immune responses and inflammatory processes are consistently linked to aging (Chung H. Y. et al., <xref ref-type="bibr" rid="B41">2009</xref>), it has been difficult to define the role of inflammation in neurodegeneration (Ransohoff, <xref ref-type="bibr" rid="B237">2016</xref>). Inflammation corresponds to the protective response by which immune cells react in a balanced way against unexpected cells or debris (Karin and Clevers, <xref ref-type="bibr" rid="B130">2016</xref>). For example, inflammation constitutes a primary response against pathogenic microorganisms in the intestinal epithelium. Metabolic changes observed in aging cells (DNA damage, loss of proteostasis, stress signals) affect the immune response against pathogens in the intestine and it is likely the cause why elderly individuals are more susceptible to infectious diseases and changes in health and lifespan (Ayyaz and Jasper, <xref ref-type="bibr" rid="B10">2013</xref>). Another metabolic change that occurs in aging cells is the redox imbalance, which can be caused by weakness of the anti-oxidative defense system that cannot cope with the increased production of reactive species (Chung H. Y. et al., <xref ref-type="bibr" rid="B41">2009</xref>). Notably, the increased lifespan observed with the anti-oxidant action of caloric restriction is associated to the modulation of pro-inflammatory signals such as NF-kB, TNF-&#x003B1;, and interleukins (Kim et al., <xref ref-type="bibr" rid="B138">2002</xref>; Zou et al., <xref ref-type="bibr" rid="B327">2004</xref>). Importantly, aging is associated with abnormal inflammatory responses in the brain, where the levels of pro-inflammatory cytokines are elevated, and the anti-inflammatory ones are reduced (Ye and Johnson, <xref ref-type="bibr" rid="B320">1999</xref>; Sierra et al., <xref ref-type="bibr" rid="B265">2007</xref>; Cribbs et al., <xref ref-type="bibr" rid="B49">2012</xref>).</p>
<p>The nervous system is able to generate immune responses, and most of these processes are commanded by microglia and dendritic cells (Carson et al., <xref ref-type="bibr" rid="B27">2006</xref>). Macrophages dominate sites of CNS injury where they promote both injury and repair. These cells are classified into the proinflammatory, neurotoxic M1 cells, and the M2 cells, which promote axon growth and remyelination (Kigerl et al., <xref ref-type="bibr" rid="B136">2009</xref>). Morphologically, inflammation in the CNS is characterized by a different shaped microglia, which looks hypertrophic after an acute damage, or dystrophic after aging and neurodegeneration (Ransohoff, <xref ref-type="bibr" rid="B237">2016</xref>). On the other hand, following injury to the nervous system, an important event is the inflammatory response associated to WD. In this process, glial cells fragment axons, isolate and convert myelin into lipid droplets even before the arrival of macrophages (Stoll et al., <xref ref-type="bibr" rid="B275">1989</xref>). Then, the levels of cytokines and chemokines such as TNF-&#x003B1; and IL-1 are upregulated, leading to macrophage recruitment (Gillen et al., <xref ref-type="bibr" rid="B95">1998</xref>; Liefner et al., <xref ref-type="bibr" rid="B158">2000</xref>).</p>
<p>Multiple sclerosis (MS) is perhaps the most classic neurodegenerative disease associated to inflammation. MS is an autoimmune disease triggered by CD4<sup>&#x0002B;</sup> T helper lymphocytes and characterized by demyelination scattered throughout the CNS (Lucchinetti and Bruck, <xref ref-type="bibr" rid="B169">2004</xref>). Mitochondria plays an important role in the pathomechanism of MS, affecting the normal relation between axons and glia through several defects including Ca<sup>2&#x0002B;</sup> imbalance caused by excessive proinflammatory cytokines, deregulation of oxidative stress, impaired energy production and mitochondrial autophagy (Patergnani et al., <xref ref-type="bibr" rid="B225">2017</xref>). These processes are in part mediated by the formation of the mPTP, which interestingly, has been strongly linked to axonal degeneration (Barrientos et al., <xref ref-type="bibr" rid="B12">2011</xref>; Villegas et al., <xref ref-type="bibr" rid="B298">2014</xref>). In fact, blocking mPTP formation has been proposed as a therapy for MS, with different compounds being currently tested in clinical trials (Su et al., <xref ref-type="bibr" rid="B278">2012</xref>; Shirani et al., <xref ref-type="bibr" rid="B263">2016</xref>).</p>
<p>Another interesting connection between inflammation, aging and axonal degeneration was made after the discovery that SARM1 is required for the degeneration of axons (Osterloh et al., <xref ref-type="bibr" rid="B219">2012</xref>). Sarm1 is a pro-degenerative molecule that works after injury to trigger degeneration through a loss of NAD<sup>&#x0002B;</sup>, which is mediated by its TIR domain (Gerdts et al., <xref ref-type="bibr" rid="B92">2015</xref>; Summers et al., <xref ref-type="bibr" rid="B281">2016</xref>; Essuman et al., <xref ref-type="bibr" rid="B70">2017</xref>). A crucial aspect of the mechanism is that Sarm1 cell-autonomously triggers axonal degeneration, a surprising finding considering the role of this molecule in immune responses (Carty et al., <xref ref-type="bibr" rid="B28">2006</xref>). Sarm1, Myd88, and Trif are adaptor molecules for Toll-like receptors, and as they are expressed in neurons, they are able to produce cytokines in response to pathogen infection (Chen et al., <xref ref-type="bibr" rid="B30">2011</xref>; Lin et al., <xref ref-type="bibr" rid="B159">2014</xref>). Interestingly, Sarm1 is not expressed in glial cells (Lin et al., <xref ref-type="bibr" rid="B159">2014</xref>) and it is evolutionarily distinct from other proteins carrying TIR domains (Malapati et al., <xref ref-type="bibr" rid="B180">2017</xref>), suggesting that its complete role is not yet fully understood. Sarm1 colocalizes with mitochondria (Panneerselvam et al., <xref ref-type="bibr" rid="B221">2012</xref>) and regulates cell death after glucose and oxygen deprivation, recruiting JNK3 to the mitochondria (Kim et al., <xref ref-type="bibr" rid="B140">2007</xref>; Mukherjee et al., <xref ref-type="bibr" rid="B206">2013</xref>). Also, this protein was found in a genome-wide screening as an activator of PMK-1, a <italic>C. elegans</italic> p38-related kinase involved in stress-induced detoxification, oxidative stress and aging (Crook-McMahon et al., <xref ref-type="bibr" rid="B50">2014</xref>). Notably, over a decade ago Sarm1 was proposed as a candidate gene implicated in the onset of hereditary inflammatory diseases, after analyzing family-based human linkage disequilibrium studies (Mink and Csiszar, <xref ref-type="bibr" rid="B198">2005</xref>). Recently, mice lacking the Sarm1 protein showed resistance to distal axonal degeneration in a model of chemotherapy induced peripheral neuropathy (Turkiew et al., <xref ref-type="bibr" rid="B288">2017</xref>). These studies, altogether with the recent characterization of the TIR domain, open novel opportunities to use Sarm1 as a target for therapeutic approaches for neuropathies.</p>
</sec>
<sec>
<title>Stem cells and regeneration</title>
<p>Regeneration of tissues after injury requires in most cases, the presence of functional stem cells, the population of cells able to self-renew and the primal source of differentiated cell types. As all cells, Stem cells can be target of damaging mechanisms that can affect their function, decrease their viability and ultimately, compromise their ability to produce new cell lines. The damage received by stem cells is the basis of one of the most accepted theories of aging, which suggests that aging at the organism level is caused by exhaustion of stem-cell populations and the loss of regenerative responses after damage (Ruzankina et al., <xref ref-type="bibr" rid="B247">2007</xref>). Several age-associated processes have been linked to the affected function of stem cells, including telomere shortening (Ferron et al., <xref ref-type="bibr" rid="B77">2009</xref>), cellular senescence (Molofsky et al., <xref ref-type="bibr" rid="B201">2006</xref>), and other interconnected pillars of aging such as epigenetic (Sun et al., <xref ref-type="bibr" rid="B282">2014</xref>), metabolism (Deng et al., <xref ref-type="bibr" rid="B58">2015</xref>), and proteostasis (Fredriksson et al., <xref ref-type="bibr" rid="B82">2012</xref>).</p>
<p>In the nervous system, neural stem cells (NSCs) are responsible for neurogenesis and neuron replenishment within limited areas of the CNS. Many approaches have been tested to use NSCs injection in specific regions of the brain as a therapeutic intervention for NDs. By instance NSCs injected into the subiculum or hippocampus of two different transgenic AD mouse models decreased A&#x003B2; pathology and improved synaptic deficits (Blurton-Jones et al., <xref ref-type="bibr" rid="B17">2014</xref>). Similar results were obtained in the P301S-tau model, where injection of NSCs that differentiated into astrocytes, increased glial-derived neurotrophic factor (GDNF) production and led to neuroprotection (Hampton et al., <xref ref-type="bibr" rid="B101">2010</xref>). In contrast, it has been more difficult to observe an improvement in PD after injection of NSCs in the substantia nigra (Lindvall, <xref ref-type="bibr" rid="B160">2013</xref>), and in HD after injection of NSCs in the striatum (Cicchetti et al., <xref ref-type="bibr" rid="B42">2009</xref>). However, just as in AD, the increased production of neurotrophins such as IGF-1 and GDNF could be key to reach an improvement in motor and cognitive response in both diseases. Therefore, transplantation of NSCs that stimulate neurotrophin production appears to be a promising therapeutic intervention for NDs (Marsh and Blurton-Jones, <xref ref-type="bibr" rid="B183">2017</xref>).</p>
<p>NSCs have been also used to improve axonal regeneration in the peripheral nervous system (PNS) after injury or nerve transection. WD in axons is a required initial step for regeneration (Martin et al., <xref ref-type="bibr" rid="B186">2010</xref>) and after axonal damage, Schwann cells switch from a myelinating to a phagocytic phenotype and recruit macrophages to initiate the regenerative process (Fairbairn et al., <xref ref-type="bibr" rid="B71">2015</xref>). Following sciatic nerve injury in rats, injection of NSCs transfected with two recombinant vectors containing either brain-derived neurotrophic factor (BDNF) gene or GDNF gene increased myelination and induced functional recovery (Fu et al., <xref ref-type="bibr" rid="B85">2011</xref>). Similarly, a silicon conduit filled with NSCs and NGF connecting a sciatic nerve injury was used to increase axon myelination and induce functional recovery in rats (Xu et al., <xref ref-type="bibr" rid="B318">2012</xref>). It will be interesting to follow the next clinical trials using stem cells and specially, how they manage the current difficulties in the translation to patients, including heterogeneity of lines and techniques (Marsh and Blurton-Jones, <xref ref-type="bibr" rid="B183">2017</xref>).</p>
</sec>
<sec>
<title>Epigenetics</title>
<p>The fact that individuals with similar genetic backgrounds can age very differently constitutes an intriguing situation. Epigenetics involve the understanding of the mechanisms that allow individual cells to translate their genome differentially under functional and stable conditions in a multicellular organism (Schwartzman and Tanay, <xref ref-type="bibr" rid="B257">2015</xref>). These mechanisms include DNA methylation, histone modification and chromatin accessibility, and they provide a different level of control for the genetic expression in each cell of the organism harboring the same genetic information at the DNA level. DNA methylation occurs at the 5&#x02032; position of a cytosine, preferentially when it is followed by a guanine (CpG context) and it is a major and dynamic mechanism for differential gene expression between tissues and cell-type differentiation (Boyd-Kirkup et al., <xref ref-type="bibr" rid="B19">2013</xref>). On the other hand, histone modification through methylation, phosphorylation, acetylation and ubiquitylation, is another dynamic way to control gene expression, regulating the balance between the accessible euchromatin and the compacted heterochromatin, and with this, the facilitated transcription of specific DNA regions.</p>
<p>Both DNA methylation and histone modification have been linked to aging, supporting one of the original theories of aging: the increased difficulty of cells to express genes with aging due to changes in the DNA, especially the ones related to more relevant pathways for aged cells such as autophagy (Madeo et al., <xref ref-type="bibr" rid="B174">2015</xref>). The modification of histones is a process affected by age. For instance, the protective effect of Sirtuins and Polycomb proteins through deacetylation and methylation respectively, is lost in old cells triggering the upregulation of NFkB and pro-senescence genes like p16 (Rando and Chang, <xref ref-type="bibr" rid="B236">2012</xref>). Decreased levels of methylation were found in inflammatory genes such as TNF and iNOS when DNA from old blood cells was sequenced (Gowers et al., <xref ref-type="bibr" rid="B98">2011</xref>). Also, hypermethylation was found in CpG islands of promoter regions of DNA from aged cells (Christensen et al., <xref ref-type="bibr" rid="B37">2009</xref>), in DNA-binding factor genes in human brain (Hernandez et al., <xref ref-type="bibr" rid="B110">2011</xref>) and in genes associated to development and differentiation such as FGF17, FZD1, and FZD7 (Salpea et al., <xref ref-type="bibr" rid="B252">2012</xref>).</p>
<p>Epigenetic events in the context of neurodegeneration and axonal degeneration are less described than in aging, in part because studying epigenetic changes in the brain is particularly difficult. Cell heterogeneity and different functional states of neuronal populations makes epigenetics studies in the brain harder than other tissues (Maze et al., <xref ref-type="bibr" rid="B192">2014</xref>). The microtubule-associated protein tau, a main player in AD pathomechanism, triggers heterochromatin relaxation in transgenic flies and AD patients in a mechanism mediated by oxidative stress and DNA damage (Frost et al., <xref ref-type="bibr" rid="B84">2014</xref>). DNA remodeling increases the transcription of genes normally silent as compared to control transcriptional profiles, suggesting that this epigenetic effect may work as a potential therapeutic target for AD. Similar clues have been found in the study of HD, another neurodegenerative disease caused by the expansion of CAG repeats coding for glutamine (PolyQ) in the huntingtin gene. PolyQ expansions in this gene have been linked to DNA remodeling and histone modifications (Steffan et al., <xref ref-type="bibr" rid="B274">2001</xref>; Sadri-Vakili et al., <xref ref-type="bibr" rid="B249">2007</xref>), changes in DNA methylation and transcription of key neuronal-specific genes (Ng et al., <xref ref-type="bibr" rid="B214">2013</xref>; Wood, <xref ref-type="bibr" rid="B311">2013</xref>), and alteration of ncRNAs (Johnson et al., <xref ref-type="bibr" rid="B125">2008</xref>; Lee et al., <xref ref-type="bibr" rid="B152">2011</xref>). Expansions in C9orf72, the gene that is most commonly linked to ALS, include CpG islands that are hypermethylated in tissue from ALS patients (Xi et al., <xref ref-type="bibr" rid="B315">2015</xref>), and altered histone methylation pattern causes reduction on the C9orf72 mRNA expression in the patient&#x00027;s brain (Belzil et al., <xref ref-type="bibr" rid="B15">2014</xref>).</p>
<p>As explained above, WD after axonal injury is associated to dedifferentiation and proliferation of Schwann cells. Proliferation is regulated through an epigenetic effect of the histone demethylase Jmjd3, which after injury activates the Ink4a/Arf locus to switch off proliferation and trigger the senescence program (Gomez-Sanchez et al., <xref ref-type="bibr" rid="B96">2013</xref>). The high plasticity observed in Schwann cells could also play an important role in the events leading to neurodegeneration. Current research efforts are focusing on trying to properly define the link between disease-linked mutations and the temporality of epigenetic effects. Hopefully, that connection could be used as a potential biomarker to determine pre-clinically the progression of neurodegenerative disorders.</p>
</sec>
<sec>
<title>Metabolism</title>
<p>In this section, we will focus on two topics that, even though are connected to previously described mechanisms, can still provide novel views to understand the connection between aging and degenerative mechanisms in the neuron. These topics are nutrigenomics or the effect of the food and nutrients on gene expression (Grayson, <xref ref-type="bibr" rid="B99">2010</xref>), and the regulation of circadian clocks and sleep patterns (Musiek and Holtzman, <xref ref-type="bibr" rid="B208">2016</xref>).</p>
<p>Nowadays, the relevance of specific and personalized diets, with the aim of improving the quality and extension of life, is getting common. However, the beneficial outcome of specific types of food or a reduction on caloric intake, not only applies to lifespan extension (Madeo et al., <xref ref-type="bibr" rid="B174">2015</xref>) but also has been associated to axonal degeneration (Speakman and Mitchell, <xref ref-type="bibr" rid="B273">2011</xref>). Caloric restriction extends lifespan through different mechanisms that include increased autophagy and activation of mTOR and FOXO (Galluzzi et al., <xref ref-type="bibr" rid="B88">2014</xref>), reduction of mitochondrial ROS production (Ash and Merry, <xref ref-type="bibr" rid="B8">2011</xref>), mitochondrial biogenesis via upregulation of PGC-1a (Nisoli et al., <xref ref-type="bibr" rid="B215">2005</xref>) and activity of Sirtuins (Jasper, <xref ref-type="bibr" rid="B123">2013</xref>). Sirtuins are deacetylases that catalyze the consumption of NAD<sup>&#x0002B;</sup>, and are required for lifespan extension after supplementing nicotinic acid (a source of NAD<sup>&#x0002B;</sup>). Sirtuins have been extensively studied with contrasting results. In flies and worms, Sirt1 was linked with extension of lifespan (Rogina and Helfand, <xref ref-type="bibr" rid="B242">2004</xref>; Viswanathan et al., <xref ref-type="bibr" rid="B299">2005</xref>), a discovery that was later challenged (Burnett et al., <xref ref-type="bibr" rid="B23">2011</xref>).</p>
<p>Not that well-studied, at least in a direct way, is the effect of caloric restriction on axonal degeneration. Previous studies performed by our group using a genetic <italic>mec-4d C. elegans</italic> model of axonal degeneration and a mouse model of acute injury, demonstrated that caloric restricted diet and systemic antioxidant treatment protected both models from axonal degeneration, which was associated with decreased oxidative damage. Moreover, downregulation of the Insulin/IGF-1-like signaling (IIS) pathway protected neurodegeneration in a DAF-16/FOXO&#x02013;dependent manner (Calixto et al., <xref ref-type="bibr" rid="B25">2012</xref>). As mentioned above, FOXO is an important player in lifespan extension acting as an effector of the stress-response JNK pathway, both antagonizing IIS and working together with the TOR pathway as a molecular switch between growth promotion and lifespan extension according to nutrient availability (Wang et al., <xref ref-type="bibr" rid="B303">2005</xref>). Importantly, a phase 2 trial based on dietary restriction proved to be successful against metabolic syndrome through reducing glucose and circulating IGF-1 (Wei et al., <xref ref-type="bibr" rid="B307">2017</xref>). Using another variation of dietary restriction (intermittent fasting), improvements in motor performance were observed in a mouse model of neuropathic pain (Madorsky et al., <xref ref-type="bibr" rid="B176">2009</xref>) and in a spinal cord injury mouse model (Jeong et al., <xref ref-type="bibr" rid="B124">2011</xref>), further supporting the effect of caloric restriction in neuronal health. Notably, SIRT2 was also linked to axonal degeneration (Araki et al., <xref ref-type="bibr" rid="B7">2004</xref>) and WD (Suzuki and Koike, <xref ref-type="bibr" rid="B283">2007</xref>) in a mechanism that involves tubulin deacetylation and a delay on axonal degeneration. However, the potential role of SIRT2 and NAD&#x0002B;/NADH balance in WD was discarded in <italic>Drosophila</italic>, as downregulation of this enzyme did not induce spontaneous degeneration and did not suppress the ability of Wld<sup>S</sup> to slow axonal degeneration <italic>in vivo</italic> (Avery et al., <xref ref-type="bibr" rid="B9">2009</xref>).</p>
<p>In addition, emerging evidence indicate that a ketogenic diet, which consists of high fat, adequate protein and low carbohydrate intake, can improve motor and cognitive performance in NDs. By instance, administration of ketogenic diet to transgenic ALS mice resulted in higher motor neuron survival and an in motor function improvement when compared to control mice (Zhao et al., <xref ref-type="bibr" rid="B326">2006</xref>). Another study performed by the same group in transgenic ALS mice fed with caprylic triglyceride showed protection from spinal cord motor neuron loss and improved motor performance (Zhao et al., <xref ref-type="bibr" rid="B325">2012</xref>). Similar positive results have been obtained in AD models. For example, the toxic effects of A&#x003B2; on hippocampal neurons were prevented by addition of &#x003B2;-hydroxybutyrate to cell cultures (Kashiwaya et al., <xref ref-type="bibr" rid="B132">2000</xref>). Moreover, studies performed in transgenic mouse models of AD fed with ketogenic diet showed decreased levels of A&#x003B2; aggregates and tau pathology in the brain (Van der Auwera et al., <xref ref-type="bibr" rid="B293">2005</xref>; Kashiwaya et al., <xref ref-type="bibr" rid="B131">2013</xref>). The effects of ketogenic diet on PD have also been investigated. Administration of &#x003B2;-hydroxybutyrate to mice treated with MPTP protected from neurodegeneration and motor impairment (Tieu et al., <xref ref-type="bibr" rid="B286">2003</xref>). Similarly, PD pathology induced by 6-hydroxydopamine in rats was attenuated when a ketogenic diet was administered (Cheng et al., <xref ref-type="bibr" rid="B32">2009</xref>).</p>
<p>Another process that links metabolism with aging and neurodegeneration is the circadian clock. Sleep problems and circadian malfunctions are known consequences of aging and NDs and they are also hallmarks of early stages of NDs (Musiek and Holtzman, <xref ref-type="bibr" rid="B208">2016</xref>). In humans, the control of the circadian rhythm is based on the interaction of CLOCK with ARNTL, a protein found in high levels at the beginning of the day. This complex activates PER and CRY, which is upregulated at night and blocks the CLOCK-ARNTL complex at the start of the night cycle. When CRY levels decrease in the morning, the original complex forms again and re-starts the day cycle 24 h later (Videnovic et al., <xref ref-type="bibr" rid="B296">2014</xref>). This process occurs mostly in neurons from the suprachiasmatic nucleus (SCN), the peacemaker of our body, and the activity of these neurons controls up to 10% of the human genome. Furthermore, degeneration of this group of neurons causes sleep and circadian disruption, which leads to increase in ROS production (Koh et al., <xref ref-type="bibr" rid="B142">2006</xref>; Wang et al., <xref ref-type="bibr" rid="B304">2012</xref>), inflammation (Prolo et al., <xref ref-type="bibr" rid="B233">2005</xref>), proteostasis alterations (Stratmann et al., <xref ref-type="bibr" rid="B277">2012</xref>), and neurodegeneration (Holth et al., <xref ref-type="bibr" rid="B114">2017</xref>). Genzer et al. linked the circadian changes with the levels of BDNF, the most abundant neurotrophin in the brain that causes neurodegeneration when its levels are low. When mice were fed a high fat diet, circadian levels of brain and liver BDNF were altered, mTOR was downregulated and AMPK was activated, which could link circadian clock with obesity and neurodegeneration (Genzer et al., <xref ref-type="bibr" rid="B91">2016</xref>). In <italic>Drosophila</italic>, downregulation of other two modifiers of circadian clock, Spag and Dbt, causes upregulation of the caspase Dronc which cleaves tau and increases neurodegeneration in a model of tauopathy (Means et al., <xref ref-type="bibr" rid="B193">2015</xref>). As in the case of caloric restriction, circadian rhythm is also regulated by Sirtuins and FOXO. Notably, SIRT1 is a master regulator of the circadian clock, activating the key components CLOCK and ARNTL. As the organism ages, SIRT1 decreases in the SCN failing to properly control the circadian clock (Chang and Guarente, <xref ref-type="bibr" rid="B29">2014</xref>). Supporting this mechanism, NAD<sup>&#x0002B;</sup> levels also follow a rhythm regulated by the circadian levels of NAMPT (nicotinamide phosphoribosyltransferase), an important step in NAD<sup>&#x0002B;</sup> metabolism (Nakahata et al., <xref ref-type="bibr" rid="B211">2009</xref>). Even though there is no solid connection yet between circadian rhythm and axonal degeneration, it would be interesting to further explore the mentioned components of circadian regulation and NAD<sup>&#x0002B;</sup> levels on axonal degeneration and its connection to neurodegenerative conditions.</p>
</sec>
<sec>
<title>Macromolecular damage</title>
<p>Several external sources and internal metabolic processes generate as by-product free radicals (FR) such as ROS (Lipsky and King, <xref ref-type="bibr" rid="B162">2015</xref>). For a long time the generation of FR has been linked to aging (Harman, <xref ref-type="bibr" rid="B105">1956</xref>), and the theory that senescence is associated with the accumulation of oxidative damage to macromolecules caused by ROS has been focus of intense research. Damage of organic molecules by FR affects different processes such as proteostasis and response to stress, and importantly puts the mitochondria in a central stage of the aging process. Mitochondria is the largest ROS generator, and in conditions of excessive ROS production, damage to key mitochondrial proteins and DNA occurs, leading to mitochondrial dysfunction, decreased energy production and overall senescence of the cell (Richardson and Schadt, <xref ref-type="bibr" rid="B240">2014</xref>). It has been proposed that with increasing age, the low demand of energy produced by mitochondria due to sedentary lifestyle induces metabolic changes that lead to altered reductants/oxidants ratio. This change triggers a shift favoring an oxidized redox state leading to macromolecular damage (Brewer, <xref ref-type="bibr" rid="B21">2010</xref>). However, whether macromolecular damage caused by oxidative stress constitutes the cause or the consequence of aging and ND-related mechanisms remains yet unclear.</p>
<p>The effect of oxidative damage on macromolecules has been extensively studied in relation to NDs. For example, In the case of ALS, the first genetic link to the disease was made with the discovery of mutations in superoxide dismutase SOD1, an enzyme that catalyzes the conversion of the toxic <inline-formula><mml:math id="M1"><mml:msubsup><mml:mrow><mml:mtext>O</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> anions into O<sub>2</sub> and H<sub>2</sub>O<sub>2</sub> (Rosen et al., <xref ref-type="bibr" rid="B243">1993</xref>). Oxidative damage in the mitochondria was immediately linked to the disease and further studies aimed at testing potential pharmacological targets in SOD1 transgenic models revealed modest beneficial outcomes (Julien and Kriz, <xref ref-type="bibr" rid="B129">2006</xref>). Furthermore, these studies have been unsuccessfully translated into humans (Ludolph et al., <xref ref-type="bibr" rid="B170">2009</xref>). TDP43 and FUS, other 2 ALS-causative genes, are involved in the prevention or repair of transcription-associated DNA damage, as their depletion increases DNA damage (Hill et al., <xref ref-type="bibr" rid="B112">2016</xref>). Similarly, increased DNA damage is observed in iPSC-derived neurons with expansions in the C9orf72 gene. These cells also show mitochondrial dysfunction and increased oxidative stress (Lopez-Gonzalez et al., <xref ref-type="bibr" rid="B168">2016</xref>). In addition, mitochondrial dysfunction and oxidative macromolecular damage are prominent features of AD. Using primary neuronal cultures from 3xTg-AD mice, Gosh et al. demonstrated an early, reversible oxidized redox state compared to wild-type neurons. This oxidized state preceded an age-related increase in ROS levels and macromolecular ROS damage (Ghosh et al., <xref ref-type="bibr" rid="B94">2012</xref>). Moreover, a proteomic study performed in early AD subjects revealed that lipid peroxidation is an early event in the progression of AD (Reed et al., <xref ref-type="bibr" rid="B238">2009</xref>). Looking at the impact of oxidative damage on the pathology displayed by the AD transgenic model Tg2576, a recent study showed that ROS constitute a key contributor to the development of cerebral amyloid angiopathy, vasomotor dysfunction and microhemorrhage (Han et al., <xref ref-type="bibr" rid="B102">2015</xref>). Similarly, loss of glutathione and increased oxidative DNA and protein damage were observed in an <italic>in vitro</italic> model of PD, where inhibition of mitochondrial complex I by rotenone, induced the typical features of PD including aggregation of &#x003B1;-synuclein (Sherer et al., <xref ref-type="bibr" rid="B262">2002</xref>).</p>
<p>Axonal integrity, which as previously discussed is altered at initial stages of NDs, can be disrupted as consequence of oxidative damage to axonal macromolecules. An <italic>in vitro</italic> study performed in myelin purified from rats showed that myelin-associated protein and lipids are highly vulnerable to oxidative damage (Bongarzone et al., <xref ref-type="bibr" rid="B18">1995</xref>). A recent study in aged wild-type mice demonstrated that motor nerve dysfunction triggered by axonal and myelin damage was associated with a decline in antioxidant defense mechanisms, which led to oxidative protein and lipid damage (Hamilton et al., <xref ref-type="bibr" rid="B100">2016</xref>). Additionally, a number of studies have shown that oxidative damage to axonal components can trigger defects in transport across the axon (Roediger and Armati, <xref ref-type="bibr" rid="B241">2003</xref>; Sharma et al., <xref ref-type="bibr" rid="B261">2010</xref>), which is an early feature of NDs (De Vos et al., <xref ref-type="bibr" rid="B55">2007</xref>; Chu et al., <xref ref-type="bibr" rid="B38">2012</xref>; Sadleir et al., <xref ref-type="bibr" rid="B248">2016</xref>).</p>
</sec>
</sec>
<sec id="s3">
<title>Axonal degeneration at early stages of age-related neurodegenerative conditions</title>
<p>As reviewed above, many of the changes at the molecular and cellular level that occur during the aging process may have an impact on the integrity of axons. Importantly, the evidence indicates that axonal degeneration constitutes an early phase in the process of neurodegeneration that is shared by different age-related neurological diseases (Dadon-Nachum et al., <xref ref-type="bibr" rid="B53">2010</xref>; Adalbert and Coleman, <xref ref-type="bibr" rid="B1">2013</xref>; Tagliaferro and Burke, <xref ref-type="bibr" rid="B284">2016</xref>). In this section we will examine the association of specific NDs with the pillars of aging and evidence implicating axonal degeneration in their pathophysiology. We will focus specifically on AD, PD, and ALS, which constitute the most common age-related NDs. A summary of this information is presented in Tables <xref ref-type="table" rid="T1">1</xref>, <xref ref-type="table" rid="T2">2</xref>.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Association of AD, PD and ALS with the pillars of aging.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th/>
<th valign="top" align="left"><bold>Alzheimer&#x00027;s disease</bold></th>
<th valign="top" align="left"><bold>Parkinson&#x00027;s disease</bold></th>
<th valign="top" align="left"><bold>Amyotrophic lateral sclerosis</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Proteostasis</td>
<td valign="top" align="left">IRE1 signaling activation (Duran-Aniotz et al., <xref ref-type="bibr" rid="B66">2017</xref>) Rescue by inhibition of ER acetylation (Peng et al., <xref ref-type="bibr" rid="B228">2016</xref>) Elevated UPR markers (Hoozemans et al., <xref ref-type="bibr" rid="B116">2005</xref>)</td>
<td valign="top" align="left">Altered autophagy (Li et al., <xref ref-type="bibr" rid="B155">2017</xref>) Proteostasis alterations in stem cells (Chung et al., <xref ref-type="bibr" rid="B39">2013</xref>) ATF6&#x003B1; protection (Egawa et al., <xref ref-type="bibr" rid="B67">2011</xref>)</td>
<td valign="top" align="left">Decreased foldases and chaperones (Filareti et al., <xref ref-type="bibr" rid="B78">2017</xref>) Mitochondrial UPR ER&#x003B1; activation (Riar et al., <xref ref-type="bibr" rid="B239">2017</xref>) Rescue by XBP1 deficiency (Hetz et al., <xref ref-type="bibr" rid="B111">2009</xref>)</td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">Inflammation</td>
<td valign="top" align="left">Protection by TNF inhibition (MacPherson et al., <xref ref-type="bibr" rid="B172">2017</xref>) A&#x003B2;-associated microglia hyperreactivity (Yin et al., <xref ref-type="bibr" rid="B321">2017</xref>) Role of variant TREM2 (Jonsson et al., <xref ref-type="bibr" rid="B127">2013</xref>)</td>
<td valign="top" align="left">The role of IL1 (Pott Godoy et al., <xref ref-type="bibr" rid="B230">2008</xref>) Microglial activation (Gerhard et al., <xref ref-type="bibr" rid="B93">2006</xref>) TNF&#x003B1; overexpressed (Mogi et al., <xref ref-type="bibr" rid="B199">1994</xref>)</td>
<td valign="top" align="left">Inflammation and necroptosis (Ito et al., <xref ref-type="bibr" rid="B122">2016</xref>) Glial activation (Alshikho et al., <xref ref-type="bibr" rid="B5">2016</xref>) Decreased levels of &#x003B1;-1-antitrypsin (Wormser et al., <xref ref-type="bibr" rid="B312">2016</xref>)</td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">Stem cells and regeneration</td>
<td valign="top" align="left">APP binding to clathrin decreased in NSC (Poulsen et al., <xref ref-type="bibr" rid="B231">2017</xref>) Altered neurogenesis (Unger et al., <xref ref-type="bibr" rid="B289">2016</xref>) Altered stem cell proliferation and neurogenesis (Wu et al., <xref ref-type="bibr" rid="B314">2016</xref>)</td>
<td valign="top" align="left">&#x003B1; synuclein-induced alteration of neurogenesis (Desplats et al., <xref ref-type="bibr" rid="B59">2012</xref>) Impaired generation of neural precursor cells (H&#x000F6;glinger et al., <xref ref-type="bibr" rid="B113">2004</xref>)</td>
<td valign="top" align="left">Protective effect of NSC on number and function of motor neurons in SOD1 rats (Xu et al., <xref ref-type="bibr" rid="B317">2009</xref>)</td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">Adaptation to stress</td>
<td valign="top" align="left">Role of DNA repair factor BRCA1 (Suberbielle et al., <xref ref-type="bibr" rid="B279">2015</xref>) Role of EphB2 depletion (Ciss&#x000E9; et al., <xref ref-type="bibr" rid="B44">2010</xref>) Altered glutathione metabolism (Liu et al., <xref ref-type="bibr" rid="B163">2004</xref>)</td>
<td valign="top" align="left">Altered DNA damage repair (Sepe et al., <xref ref-type="bibr" rid="B259">2016</xref>) Role of XBP1 (Valdes et al., <xref ref-type="bibr" rid="B290">2014</xref>) Altered antioxidant response (Sofic et al., <xref ref-type="bibr" rid="B271">1992</xref>)</td>
<td valign="top" align="left">Protection by XBP1 deficiency (Hetz et al., <xref ref-type="bibr" rid="B111">2009</xref>) DNA repair dysfunction (Kikuchi et al., <xref ref-type="bibr" rid="B137">2002</xref>) Dysfunction of heat shock response (Chen et al., <xref ref-type="bibr" rid="B31">2016</xref>)</td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">Epigenetics</td>
<td valign="top" align="left">Role of DNA hydroxymethylation (Zhao et al., <xref ref-type="bibr" rid="B324">2017</xref>) Decreased methylation of CREB regulated transcription coactivator 1 gene (Mendioroz, <xref ref-type="bibr" rid="B194">2016</xref>) DNA methylation near TREM2 (Smith et al., <xref ref-type="bibr" rid="B266">2016</xref>)</td>
<td valign="top" align="left">&#x003B1;-synuclein involved in histone methylation (Sugeno et al., <xref ref-type="bibr" rid="B280">2016</xref>) Epigenetic deregulation in iPSC-derived dopaminergic neurons (Fernandez-Santiago et al., <xref ref-type="bibr" rid="B74">2015</xref>) Decreased methylation of &#x003B1;-synuclein gene (Jowaed et al., <xref ref-type="bibr" rid="B128">2010</xref>)</td>
<td valign="top" align="left">Different methylomes in T-cell and monocytes (Lam et al., <xref ref-type="bibr" rid="B150">2016</xref>) Role for cytosine demethylation (Esanov et al., <xref ref-type="bibr" rid="B69">2016</xref>) Rescue by C9orf72 hypermethylation (Liu et al., <xref ref-type="bibr" rid="B165">2015</xref>)</td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">Metabolism</td>
<td valign="top" align="left">Glucose metabolism (Chiotis et al., <xref ref-type="bibr" rid="B34">2017</xref>) Fatty acid metabolism (Snowden et al., <xref ref-type="bibr" rid="B270">2017</xref>) Metabolites of ornithine (Inoue et al., <xref ref-type="bibr" rid="B121">2013</xref>)</td>
<td valign="top" align="left">Altered fat distribution (Bernhardt et al., <xref ref-type="bibr" rid="B16">2016</xref>) Changes in glucose metabolism (Dunn et al., <xref ref-type="bibr" rid="B65">2014</xref>) Iron metabolism is altered (Logroscino et al., <xref ref-type="bibr" rid="B166">1997</xref>)</td>
<td valign="top" align="left">Mitochondrial bioenergetics (Ladd et al., <xref ref-type="bibr" rid="B149">2017</xref>) Astrocyte metabolism (Madji Hounoum et al., <xref ref-type="bibr" rid="B175">2017</xref>) Mutations in transcription-associated DNA damage repair proteins (Hill et al., <xref ref-type="bibr" rid="B112">2016</xref>)</td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">Macro molecular damage</td>
<td valign="top" align="left">Redox changes (Ghosh et al., <xref ref-type="bibr" rid="B94">2012</xref>) Oxidative DNA damage in leukocytes (Migliore et al., <xref ref-type="bibr" rid="B196">2005</xref>) Peroxynitrite involved in oxidative damage (Smith et al., <xref ref-type="bibr" rid="B269">1997</xref>)</td>
<td valign="top" align="left">Lipid peroxidation (Mythri et al., <xref ref-type="bibr" rid="B209">2011</xref>) Peripheral protein oxidation (Saito et al., <xref ref-type="bibr" rid="B251">2009</xref>) Mitochondrial impairment and oxidative damage (Sherer et al., <xref ref-type="bibr" rid="B262">2002</xref>)</td>
<td valign="top" align="left">SOD gene mutations (Rosen et al., <xref ref-type="bibr" rid="B243">1993</xref>) Mutations in iPSC-derived neurons linked with oxidative stress (Lopez-Gonzalez et al., <xref ref-type="bibr" rid="B168">2016</xref>)</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>Evidence for axonal degeneration in the pathophysiology of AD, PD and ALS.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Disease</bold></th>
<th valign="top" align="left"><bold>Evidence for axonal degeneration in NDs</bold></th>
<th valign="top" align="left"><bold>References</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Alzheimer&#x00027;s disease</td>
<td valign="top" align="left">Axonal pathology triggered by A&#x003B2; precedes cell body death</td>
<td valign="top" align="left">Adalbert et al., <xref ref-type="bibr" rid="B2">2009</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Axonal leakage, swollen axons, and varicosities are associated with A&#x003B2; plaques and hyperphosphorylated tau in AD brains</td>
<td valign="top" align="left">Xiao et al., <xref ref-type="bibr" rid="B316">2011</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Autophagic vesicles are linked with axonal pathology in transgenic AD mice</td>
<td valign="top" align="left">Sanchez-Varo et al., <xref ref-type="bibr" rid="B253">2011</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Microtubule-stabilizing agent Epothilone D reduces axonal dysfunction un a mouse model of tau</td>
<td valign="top" align="left">Zhang et al., <xref ref-type="bibr" rid="B323">2012</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">A&#x003B2; oligomers cause microtubule depolymerization leading to altered axonal trafficking</td>
<td valign="top" align="left">Sadleir et al., <xref ref-type="bibr" rid="B248">2016</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">Parkinson&#x00027;s disease</td>
<td valign="top" align="left">Alterations in axonal transport associated with &#x003B1;-synuclein mutations <italic>in vitro</italic></td>
<td valign="top" align="left">Saha, <xref ref-type="bibr" rid="B250">2004</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Degeneration of axons precedes loss of cell bodies in PD patients</td>
<td valign="top" align="left">Orimo et al., <xref ref-type="bibr" rid="B217">2005</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Transgenic &#x003B1;-synuclein mouse model shows striatal dopaminergic axonal, but not cell body, disruption</td>
<td valign="top" align="left">Tofaris, <xref ref-type="bibr" rid="B287">2006</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">&#x003B1;-synuclein is linked with axonal degeneration which iniciates at the distal axon and continues retrograde</td>
<td valign="top" align="left">Orimo et al., <xref ref-type="bibr" rid="B218">2008</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">&#x003B1;-synuclein rat model shows altered axonal transport</td>
<td valign="top" align="left">Chung C. Y. et al., <xref ref-type="bibr" rid="B40">2009</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Transgenic LRRK2 mouse model shows dopaminergic axonal, but not cell body, disruption</td>
<td valign="top" align="left">Li et al., <xref ref-type="bibr" rid="B157">2009</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Axonal pathology triggered by &#x003B1;-synuclein propagates later to the soma is associated with neuronal dysfunction</td>
<td valign="top" align="left">Volpicelli-Daley et al., <xref ref-type="bibr" rid="B300">2011</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Early decline in axonal transport associated with &#x003B1;-synuclein aggregation in PD patients</td>
<td valign="top" align="left">Chu et al., <xref ref-type="bibr" rid="B38">2012</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Autophagy is involved in axonal pathology and associated with &#x003B1;-synuclein and LRRK2 proteins</td>
<td valign="top" align="left">Friedman et al., <xref ref-type="bibr" rid="B83">2012</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">Amyotrophic lateral sclerosis</td>
<td valign="top" align="left">Axonal pathology starts at the distal axon and continues in a &#x0201C;dying back&#x0201D; pattern in the innervated muscle fibers</td>
<td valign="top" align="left">Fischer et al., <xref ref-type="bibr" rid="B80">2004</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">SARM1 gene mutations are linked with ALS development</td>
<td valign="top" align="left">Fogh et al., <xref ref-type="bibr" rid="B81">2014</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Defects in axonal transport constitute a typical feature in Drosophila models of ALS</td>
<td valign="top" align="left">Baldwin et al., <xref ref-type="bibr" rid="B11">2016</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Axonal degeneration is mediated by necroptosis and inflammation in ALS</td>
<td valign="top" align="left">Ito et al., <xref ref-type="bibr" rid="B122">2016</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Potassium channel abnormalities are linked to axon degeneration in ALS mouse model</td>
<td valign="top" align="left">Maglemose et al., <xref ref-type="bibr" rid="B177">2017</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left">ALS-related mutations change the subcellular expression and localization of RNAs within neuronal axon</td>
<td valign="top" align="left">Rotem et al., <xref ref-type="bibr" rid="B244">2017</xref></td>
</tr>
</tbody>
</table>
</table-wrap>
<sec>
<title>Alzheimer&#x00027;s disease</title>
<p>AD is a progressive neurodegenerative disorder and constitutes the most frequent form of dementia in the elderly population (Alzheimer&#x00027;s Association, <xref ref-type="bibr" rid="B6">2016</xref>). Although several risk factors have been associated with the pathophysiology of sporadic AD, aging being the most important one, its exact cause remains unrevealed. However, compelling evidence indicate that A&#x003B2; dyshomeostasis constitutes a key event involved in the etiopathogenesis of AD, which promotes the accumulation of the protein and further development of all the neuropathological and clinical features of the disease (Selkoe and Hardy, <xref ref-type="bibr" rid="B258">2016</xref>).</p>
<p>As discussed above, perturbation of the proteostasis network leading to the accumulation of protein aggregates is a normal feature of aging, and there is increasing evidence showing that this also occurs in AD (Hoozemans et al., <xref ref-type="bibr" rid="B116">2005</xref>, <xref ref-type="bibr" rid="B115">2009</xref>; Peng et al., <xref ref-type="bibr" rid="B228">2016</xref>; Duran-Aniotz et al., <xref ref-type="bibr" rid="B66">2017</xref>). Hence, it is possible that deterioration of the cellular function as a consequence of aging leads to the imbalance of A&#x003B2; production and degradation, triggering the abnormal accumulation of the peptide, reaching toxic levels. Indeed, although A&#x003B2; deposition in the brain constitutes the main pathological feature of AD, this process also occurs during normal aging. Histopathological analyses have revealed that in the cases where A&#x003B2; deposition is present in brain tissue from non-demented individuals, the amyloid structures are not associated with abnormal neuronal processes, synapse loss, and cognitive alterations as occur in AD brain tissue (Serrano-Pozo et al., <xref ref-type="bibr" rid="B260">2011</xref>), suggesting that degeneration of axons and dendrites (also referred to as neurites) constitutes a key event involved in the A&#x003B2;-related mechanisms that participate in the transition from normal aging to dementia. Moreover, neurons affected in AD follow a dying-back pattern of degeneration, where axonal disruption and synaptic loss precede neuronal cell death and manifest in early stages of the disease (Serrano-Pozo et al., <xref ref-type="bibr" rid="B260">2011</xref>; Adalbert and Coleman, <xref ref-type="bibr" rid="B1">2013</xref>).</p>
<p>Although A&#x003B2;-related axonal and dendritic dystrophy is an early histopathological observation in postmortem AD brains (Knowles et al., <xref ref-type="bibr" rid="B141">1999</xref>; Nelson et al., <xref ref-type="bibr" rid="B212">2012</xref>) and in animal models of AD (Mucke et al., <xref ref-type="bibr" rid="B205">2000</xref>), whether A&#x003B2; deposition is the cause of axonal and dendritic degeneration or constitutes a consequence of an underlying neurodegenerative process remains currently unknown and there is evidence demonstrating that both possibilities may occur. Traumatic brain injury (TBI) is one of the main environmental risk factors for the development of AD (Alzheimer&#x00027;s Association, <xref ref-type="bibr" rid="B6">2016</xref>). Diffuse axonal injury represents a typical consequence of TBI, where disruption of the cytoskeleton results in swollen axons, altered axonal transport, and mitochondrial dysfunction (Choe, <xref ref-type="bibr" rid="B35">2016</xref>). Intra-axonal upregulation of the amyloid precursor protein (APP) and increased processing of the protein resulting in diffuse A&#x003B2; plaque deposition occurs quickly after TBI and notably, studies in long-term survivors have revealed that axonal degeneration persists and mature A&#x003B2; plaques and tau pathology develops, which is associated with cognitive impairment (Johnson et al., <xref ref-type="bibr" rid="B126">2011</xref>). These studies suggest that A&#x003B2; accumulation occurs due to the disruption of axonal integrity following injury. Hence, it is possible that the axonal damage that occurs as a consequence of aging, could also contribute to the accumulation of A&#x003B2;. In a recent study, looking at the mechanisms of dystrophic neurite formation in AD, Sadleir and colleagues were able to show that exposure of cultured neurons to A&#x003B2; oligomers caused microtubule depolymerization leading to altered axonal trafficking (Sadleir et al., <xref ref-type="bibr" rid="B248">2016</xref>). The results were confirmed in brain tissue from both AD patients and transgenic mice, where they observed that dystrophic neurites in the close proximity to A&#x003B2; plaques contained low microtubule density, accumulation of autophagic intermediates and increased &#x003B2;-site APP cleaving enzyme (BACE1) and APP levels, which caused enhanced generation of A&#x003B2; (Sadleir et al., <xref ref-type="bibr" rid="B248">2016</xref>).</p>
<p>Extensive research focusing on the mechanisms underlying A&#x003B2; neurotoxicity has been undertaken and as a result, its association with numerous pathogenic pathways has been suggested. Among the pathways activated by A&#x003B2;, most of them are implicated in the process of axonal degeneration, including oxidative stress (Behl et al., <xref ref-type="bibr" rid="B14">1994</xref>; Hensley et al., <xref ref-type="bibr" rid="B109">1994</xref>; Butterfield et al., <xref ref-type="bibr" rid="B24">2013</xref>), mitochondrial dysfunction (Devi, <xref ref-type="bibr" rid="B60">2006</xref>; Wang et al., <xref ref-type="bibr" rid="B306">2009</xref>; Kerr et al., <xref ref-type="bibr" rid="B135">2017</xref>), and abnormal calcium signaling (Mattson et al., <xref ref-type="bibr" rid="B191">1992</xref>; Furukawa et al., <xref ref-type="bibr" rid="B87">1996</xref>; Demuro et al., <xref ref-type="bibr" rid="B57">2005</xref>; Meyer-Luehmann et al., <xref ref-type="bibr" rid="B195">2008</xref>). To date, AD drug development has been based primarily on the amyloid hypothesis, and the majority of randomized controlled trials have been designed to target this protein. However, the overall outcomes have been dramatic, with a 99.6% failure rate for approval (Cummings et al., <xref ref-type="bibr" rid="B52">2014</xref>). Nevertheless, the trails have arguably been conducted late and when there is extensive pathology and degeneration. As mentioned above, axonal degeneration represents an early event during the progression of AD, hence, unveiling the exact mechanisms that trigger the degeneration of axons represent a promising step in the field of AD drug development.</p>
</sec>
<sec>
<title>Parkinson&#x00027;s disease</title>
<p>PD is the most common motor-related ND. The precise cause of the disease remains largely unknown; although it is thought that PD is the result of a combination of genetic and environmental risk factors (Pires et al., <xref ref-type="bibr" rid="B229">2017</xref>). Due to the strong association between mutations in &#x003B1;-synuclein gene and the development of familial PD, a central focus of PD research has been the misfolding and deposition of this protein (Gao et al., <xref ref-type="bibr" rid="B89">2008</xref>; Imaizumi et al., <xref ref-type="bibr" rid="B120">2012</xref>; Gonzalez-Horta, <xref ref-type="bibr" rid="B97">2015</xref>; Wang and Hay, <xref ref-type="bibr" rid="B305">2015</xref>).</p>
<p>Recent evidence indicate that the degeneration of axons of dopaminergic neurons constitute an early event in PD development. Thus, axonal degeneration plays a critical yet unclear role in this disease. Following the observation that degeneration of the distal axons of the cardiac sympathetic nerve precedes loss of cell bodies in PD patients (Orimo et al., <xref ref-type="bibr" rid="B217">2005</xref>), Orimo and colleagues focused on the involvement of &#x003B1;-synuclein on the degeneration of axons and the timing of this process and demonstrated that the pathology commence at the distal axon and continues in a retrograde fashion (Orimo et al., <xref ref-type="bibr" rid="B218">2008</xref>). Additional evidence supporting these findings includes <italic>in vitro</italic> studies of primary neurons exposed to &#x003B1;-synuclein fibrils, where recruitment of endogenous &#x003B1;-synuclein to form insoluble aggregates was observed. Interestingly, the pathology was initially observed in axons and was associated to neuronal dysfunction, propagating proximally to the soma leading to neuronal cell death (Volpicelli-Daley et al., <xref ref-type="bibr" rid="B300">2011</xref>). Moreover, studies in a transgenic mouse model expressing a mutant form of &#x003B1;-synuclein revealed striatal dopaminergic axonal disruption, while the integrity of cell bodies of dopaminergic neurons was maintained (Tofaris, <xref ref-type="bibr" rid="B287">2006</xref>). Similarly, characterization of a transgenic mouse model that expresses mutant leucine-rich repeat kinase 2 (LRRK2), the single most common cause of inherited PD, showed a significant alteration of axonal integrity, however, no loss of dopaminergic neurons was observed (Li et al., <xref ref-type="bibr" rid="B157">2009</xref>).</p>
<p>Based on the evidence indicating that axons are the first site of degenerative change and are compromised before cell soma, Chu and colleagues used human PD tissue to investigate axonal transport in the initial stages of PD. The group demonstrated an early decline in axonal transport motor proteins, which occurred before the alteration of dopaminergic phenotypic markers and was associated with &#x003B1;-synuclein aggregation (Chu et al., <xref ref-type="bibr" rid="B38">2012</xref>). This result is in line with previous studies demonstrating alterations in axonal transport associated with &#x003B1;-synuclein mutations <italic>in vitro</italic> (Saha, <xref ref-type="bibr" rid="B250">2004</xref>) and <italic>in vivo</italic> (Chung C. Y. et al., <xref ref-type="bibr" rid="B40">2009</xref>). Looking at the mechanisms of axonal degeneration in PD, a study performed in an autophagy-deficient mouse model revealed that deletion of the autophagy gene Atg7 triggered early dendritic and axonal dystrophy, which was associated with enhanced levels of endogenous &#x003B1;-synuclein and LRRK2 proteins. This study suggests that alterations in autophagy might be involved in the pathogenesis of sporadic PD and linked with axonal degeneration (Friedman et al., <xref ref-type="bibr" rid="B83">2012</xref>).</p>
<p>A workshop presenting the state-of-the-art of axonal pathology research in PD was recently carried out and a summary of the current knowledge on the field was published (Kurowska et al., <xref ref-type="bibr" rid="B146">2016</xref>). The view of axonal degeneration as an early process in the development of PD is discussed and the importance of finding early diagnostic markers, as well as targeting axonal degeneration as a preventive measure are highlighted.</p>
</sec>
<sec>
<title>Amyotrophic lateral sclerosis</title>
<p>ALS is a progressive adult-onset disorder, characterized by the selective death of upper and lower motor neurons leading to paralysis and muscle atrophy. About 10% of ALS cases have a genetic cause, and many different forms of the disease are the result of different genetic mutations (Al-Chalabi et al., <xref ref-type="bibr" rid="B4">2016</xref>). Currently, the cause of the sporadic form of the disease remains unknown (Pasinelli and Brown, <xref ref-type="bibr" rid="B223">2006</xref>).</p>
<p>An important component of the neuronal dysfunction in ALS is the degeneration of axons (Ferraiuolo et al., <xref ref-type="bibr" rid="B75">2011</xref>). The disease initiates at the distal motor axons and continues in a &#x0201C;dying back&#x0201D; pattern, with denervation and reinnervation taking place in the innervated muscle fibers at early stages (Fischer et al., <xref ref-type="bibr" rid="B80">2004</xref>). Evidence suggest that in ALS, axonal damage takes place before loss of cell bodies and the onset of clinical symptoms, which appear only after a large proportion of motor units are lost (Dadon-Nachum et al., <xref ref-type="bibr" rid="B53">2010</xref>). Interestingly, the Wld<sup>S</sup> mouse model shows delayed axon degeneration in some peripheral neuropathies. However, it has not been successful on improving the symptoms and axonal pathology present in SOD1 mutant rodent models of ALS (Vande Velde et al., <xref ref-type="bibr" rid="B294">2004</xref>; Fischer et al., <xref ref-type="bibr" rid="B79">2005</xref>). Nonetheless, by performing a genome-wide association meta-analysis, Fogh et al. identified the SARM1 locus as spot for three SNPs linked to patients with ALS (Fogh et al., <xref ref-type="bibr" rid="B81">2014</xref>).</p>
<p>Several studies have shown impaired axonal transport in ALS, which has been demonstrated to constitute an early event during the progression of the disease (Williamson and Cleveland, <xref ref-type="bibr" rid="B309">1999</xref>; Murakami et al., <xref ref-type="bibr" rid="B207">2001</xref>; De Vos et al., <xref ref-type="bibr" rid="B55">2007</xref>). By instance, altered mitochondrial transport through the axon was demonstrated in two different SOD1 mutant mouse models of ALS (Magran&#x000E9; et al., <xref ref-type="bibr" rid="B178">2014</xref>). Furthermore, mutations in the RNA-binding protein TDP-43 can cause ALS and interestingly, it was recently demonstrated that this protein functions as an mRNA transporter across the axonal cytoskeleton and that mutations in this protein leading to ALS, alter this transport function (Alami et al., <xref ref-type="bibr" rid="B3">2014</xref>). Notably, genetic studies performed in families with ALS revealed mutations in the genes encoding the transporter proteins dynactin (Puls et al., <xref ref-type="bibr" rid="B234">2003</xref>) and tubulin (Smith et al., <xref ref-type="bibr" rid="B267">2014</xref>) which lead to reduced binding of the mutant protein to microtubules and decreased repolymerization capability respectively.</p>
<p>As discussed previously, sirtuins are an important link between aging and neurodegeneration. In ALS, altered sirtuin levels have been observed in both transgenic mouse models (Han et al., <xref ref-type="bibr" rid="B103">2012</xref>) and patients tissue (K&#x000F6;rner et al., <xref ref-type="bibr" rid="B144">2013</xref>). Moreover, in <italic>Drosophila</italic>, Sirtuin1 was described as a suppressor of neurodegeneration in the ALS model DVAP-P58S (Sanhueza et al., <xref ref-type="bibr" rid="B254">2015</xref>). Sirtuin 1 protection from axonal degeneration is regulated by Nmnat1, the protein overexpressed in the WldS model (Araki et al., <xref ref-type="bibr" rid="B7">2004</xref>). Furthermore, resveratrol, a polyphenol that exhibits beneficial effects in NDs, protects against WD by activating Sirtuin 1 through dissociation from its inhibitor DBC1 (Calliari et al., <xref ref-type="bibr" rid="B26">2014</xref>). There is evidence indicating that the metabolites obtained from NADH play a crucial role on the effect of Sirtuins (Jasper, <xref ref-type="bibr" rid="B123">2013</xref>), and considering that these metabolites, especially nicotinamide mononucleotide (NMN), are crucial in the axonal degenerative process (Di Stefano et al., <xref ref-type="bibr" rid="B61">2017</xref>), it seems plausible that sirtuins and NAD<sup>&#x0002B;</sup> metabolism might play a central role on the ALS pathomechanism, even as a potential therapeutic target for the disease (Pasinetti et al., <xref ref-type="bibr" rid="B224">2013</xref>; Tang, <xref ref-type="bibr" rid="B285">2016</xref>).</p>
<p>As mentioned previously, different gene mutations can lead to several forms of ALS. Together, the evidence presented above suggests that axonal degeneration plays a key role in ALS pathophysiology and that common mechanisms involved in axonal pathology can contribute to the development of the different forms of ALS, which will benefit the search for potential therapies to tackle them before the disease is already declared and irreversible.</p>
</sec>
<sec>
<title>Huntington&#x00027;s disease and other pathologies</title>
<p>HD is a disease that in contrast to the previously described ones, it is the most common monogenic neurological disease. HD is caused by the expansion of the gene codifying for the huntingtin protein. The mutant version carries long polyglutamine sequences encoded by repeated CAG. In HD patients, expression of mutant Htt affects neurons in the striatum and cortex, triggering neuronal dysfunction and apoptosis. Neuronal death causes motor and cognitive impairment, leading to death of patients 18 years after the onset of motor problems (Bates et al., <xref ref-type="bibr" rid="B13">2015</xref>).</p>
<p>Abnormal splicing and formation of amino-terminal Htt fragments are consequences in which the translation of mutant huntingtin causes toxicity in the disease. Htt fragments aggregate in the nucleus and sequester other proteins disrupting the proteostasis network. Interestingly, Htt fragments also affect mitochondrial function and cellular trafficking, leading to axonal dysfunction and degeneration. Even though experimental evidence demonstrate that axonal degeneration is an early event in HD (Li and Conforti, <xref ref-type="bibr" rid="B154">2013</xref>), its temporal relation with cell loss and disease symptoms is not completely understood. It has been determined in mouse models of HD and human patients that callosal axons degenerate long before the onset of motor symptoms (Gatto et al., <xref ref-type="bibr" rid="B90">2015</xref>). This phenotype was worsened with age and suggests a dying-back pattern of degeneration in HD (Gatto et al., <xref ref-type="bibr" rid="B90">2015</xref>). Early signs of axonal aggregates were also described in striatal axonal projections to the globus pallidus and the substantia nigra of mice expressing full-length mutant huntingtin. Neuropil aggregates were associated with degenerated mitochondria and with defects on protein transport (Li et al., <xref ref-type="bibr" rid="B153">2001</xref>). Importantly, a different study determined that the axonal swellings were formed age-dependently and were independent of inclusions in the soma, suggesting that axon degeneration precedes death of other neuronal compartments in a model of HD (Marangoni et al., <xref ref-type="bibr" rid="B182">2014</xref>). Mechanistically, axonal pathology in an HD mouse model shares molecular pathways with a model of axonal injury, as proteomic screens identified proteins with similar expression levels in both models (Wishart et al., <xref ref-type="bibr" rid="B310">2012</xref>). Transport failure and the associated axonal dysfunction therefore appear as central causes of early HD symptoms.</p>
<p>There are other age-related NDs where axonal dysfunction plays a central role, including glaucoma (Weinreb et al., <xref ref-type="bibr" rid="B308">2016</xref>), progressive supranuclear palsy (Lopez et al., <xref ref-type="bibr" rid="B167">2016</xref>), and vascular dementia (Elahi and Miller, <xref ref-type="bibr" rid="B68">2017</xref>). They share commonalities with the disorders already covered here, and importantly, some of the overlapping symptoms in patients can be caused by accumulation of axonal dysfunction with age, regardless the specific causative gene of each disorder.</p>
</sec>
</sec>
<sec id="s4">
<title>Concluding remarks</title>
<p>Why some individuals develop neurodegeneration and associated cognitive decline with advanced age, while others are able to preserve the cognitive function, has been the focus of intense research in recent years. However, the exact age-related molecular and cellular changes that trigger this susceptibility to neurodegeneration remain to be established. Here, we revised the evidence that support the potential role of axonal degeneration in this transition. As discussed in this review, many molecular and cellular changes that occur as organisms age may contribute to the deterioration of axons. Notably, increasing evidence in recent years has raised the awareness of axonal pathology as an early, common contributor to the pathomechanism of different age-related neurological diseases. This pathological overlapping shared by NDs represents an important focus of research not only for the impact in our current understanding of the etiology of this diseases, but also for the drug development field as it might provide potential targets for future therapeutic and, most importantly, preventative strategies aimed at limiting axonal and therefore neuronal degeneration in NDs.</p>
</sec>
<sec id="s5">
<title>Author contributions</title>
<p>NS, MS planned, researched and wrote the manuscript. PM, FC edited and helped in the planning of the manuscript.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
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<fn fn-type="financial-disclosure"><p><bold>Funding.</bold> This work was supported by Center for Integrative Biology, Universidad Mayor de Chile, FONDECYT-1150766, Geroscience Center for Brain Health and Metabolism (FONDAP-15150012), FONDECYT Postdoctoral fellowship N&#x000B0; 3170577 (MS), Ring Initiative ACT1109, and Canada-Israel Health Research initiative, jointly Funded by the Canadian Institutes of Health Research, the Israel Science Foundation, the International Development Research Centre, Canada and the Azrieli Foundation, Canada.</p>
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