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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Neurol.</journal-id>
<journal-title>Frontiers in Neurology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Neurol.</abbrev-journal-title>
<issn pub-type="epub">1664-2295</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fneur.2022.868655</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Neurology</subject>
<subj-group>
<subject>Case Report</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Novel Variants of <italic>ANO5</italic> in Two Patients With Limb Girdle Muscular Dystrophy: Case Report</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Katz</surname> <given-names>Matthew</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1663006/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Garton</surname> <given-names>Fleur C.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1197574/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Davis</surname> <given-names>Mark</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Henderson</surname> <given-names>Robert D.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/831389/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>McCombe</surname> <given-names>Pamela A.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/107263/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Neurology, Royal Brisbane and Women&#x00027;s Hospital</institution>, <addr-line>Brisbane, QLD</addr-line>, <country>Australia</country></aff>
<aff id="aff2"><sup>2</sup><institution>Institute for Molecular Bioscience, The University of Queensland</institution>, <addr-line>Brisbane, QLD</addr-line>, <country>Australia</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Diagnostic Genomics, Pathwest Laboratory Medicine</institution>, <addr-line>Perth, WA</addr-line>, <country>Australia</country></aff>
<aff id="aff4"><sup>4</sup><institution>Centre for Clinical Research, The University of Queensland</institution>, <addr-line>Brisbane, QLD</addr-line>, <country>Australia</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Giovanni Meola, University of Milan, Italy</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Matthew Wicklund, University of Colorado, United States; Gabriella Silvestri, Catholic University of the Sacred Heart, Italy</p></fn>
<corresp id="c001">&#x0002A;Correspondence: Matthew Katz <email>matthew.katz&#x00040;health.qld.gov.au</email></corresp>
<fn fn-type="other" id="fn001"><p>This article was submitted to Neuromuscular Disorders and Peripheral Neuropathies, a section of the journal Frontiers in Neurology</p></fn></author-notes>
<pub-date pub-type="epub">
<day>08</day>
<month>04</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>13</volume>
<elocation-id>868655</elocation-id>
<history>
<date date-type="received">
<day>03</day>
<month>02</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>11</day>
<month>03</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2022 Katz, Garton, Davis, Henderson and McCombe.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Katz, Garton, Davis, Henderson and McCombe</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license> </permissions>
<abstract>
<p>Here we report on two unrelated adult patients presenting with Limb girdle muscular dystrophy who were found to have novel variants in <italic>ANO5</italic>. Both patients had prominent weakness of their proximal lower limbs with mild weakness of elbow flexion and markedly elevated creatine kinase. Next generation sequencing using a custom-designed neuromuscular panel was performed in both patients. In one patient, 336 genes were targeted for casual variants and in the other patient (using a later panel design), 464 genes were targeted. One patient was homozygous for a novel splice variant [c.294&#x0002B;5G&#x0003E;A; p.(Ala98Ins4<sup>&#x0002A;</sup>)] in <italic>ANO5</italic>. Another patient was compound heterozygous for two variants in <italic>ANO5</italic>; a common frameshift variant [c.191dupA; p.(Asn64fs)] and a novel missense variant [c.952G&#x0003E;C; p.(Ala318Pro)]. These findings support the utility of next generation sequencing in the diagnosis of patients presenting with a Limb girdle muscular dystrophy phenotype and extends the genotypic spectrum of <italic>ANO5</italic> disease.</p></abstract>
<kwd-group>
<kwd>case report</kwd>
<kwd>limb girdle muscular dystrophy</kwd>
<kwd>ANO5</kwd>
<kwd>novel variant</kwd>
<kwd>next generation sequencing</kwd>
</kwd-group>
<counts>
<fig-count count="2"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="26"/>
<page-count count="5"/>
<word-count count="2863"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>Anoctamin 5 (ANO5) is a protein that belongs to a family of calcium-activated chloride channels and phospholipid scramblases (<xref ref-type="bibr" rid="B1">1</xref>). The exact function of the ANO5 protein is not completely understood although it has been shown to play a role in sarcolemma repair (<xref ref-type="bibr" rid="B1">1</xref>). Recessive variants of <italic>ANO5</italic> have been associated with a range of muscle diseases including limb girdle muscular dystrophy (LGMD R12), (<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B3">3</xref>) distal myopathy (Miyoshi-like muscular dystrophy type 3), (<xref ref-type="bibr" rid="B4">4</xref>) exercise induced myalgia, (<xref ref-type="bibr" rid="B5">5</xref>) recurrent rhabdomyolysis, (<xref ref-type="bibr" rid="B6">6</xref>) axial myopathy (<xref ref-type="bibr" rid="B7">7</xref>) and asymptomatic hyperCKemia (<xref ref-type="bibr" rid="B5">5</xref>).</p>
<p>Patients with LGMD R12 typically present in adulthood with slowly progressive proximal lower limb and bicep weakness that is often asymmetric. This is associated with markedly elevated creatine kinase (CK) levels (<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B3">3</xref>). For unknown reasons females homozygous for <italic>ANO5</italic> variants tend to have a less severe phenotype than males (<xref ref-type="bibr" rid="B5">5</xref>). Dilated cardiomyopathy and cardiac conduction disease have been reported but are rare (<xref ref-type="bibr" rid="B8">8</xref>). Magnetic resonance imaging (MRI) of the lower limbs often shows selective atrophy and fatty infiltration of the posterior calf and thigh muscles (<xref ref-type="bibr" rid="B9">9</xref>).</p>
<p>Here we report the clinical, pathologic, and genetic findings of two unrelated patients presenting with LGMD who were found to have novel variants in <italic>ANO5</italic>.</p>
</sec>
<sec id="s2">
<title>Case Report</title>
<sec>
<title>Patient 1</title>
<p>This 35-year-old Iranian man presented with slowly progressive upper and lower limb weakness from the age of 20 years. At the time of presentation, the patient had difficulty standing from the seated position and washing his hair. There were no sensory symptoms. There was no significant medical history. The patient was borne to non-consanguineous parents. His brother had similar symptoms, but four other siblings were unaffected.</p>
<p>On examination he had a waddling gait. There was no muscle wasting. Tone was normal. There was MRC 4/5 weakness of hip flexion and extension, hip adduction and knee flexion and extension. There was MRC 4&#x0002B;/5 weakness of elbow flexion bilaterally. Distal upper and lower limb strength was normal (MRC 5/5). Facial, ocular and neck strength was normal (MRC 5/5). Reflexes were normal. The sensory examination was normal. The CK was 1990. An MRI of the upper limbs performed 3 years earlier showed increased T2 signal of teres major and long head of triceps bilaterally without atrophy or fatty infiltration (<xref ref-type="fig" rid="F1">Figure 1</xref>). A muscle biopsy showed end-stage muscle disease consistent with a chronic muscular dystrophy.</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Magnetic resonance imaging (MRI) of selected muscles from patients 1 and 2. <bold>(A)</bold> Left shoulder of patient 1 - axial T2&#x0002A; weighted sequence showing increased T2 signal of teres major and long head triceps (white arrows). <bold>(B)</bold> Bilateral thighs of patient 2 - coronal T1<sup>&#x02227;</sup> weighted sequence showing extensive fatty replacement of anterior and medial thigh muscles (white arrows) with relative preservation of the right rectus femoris (black arrow). &#x0002A;T2, transverse relaxation time; <sup>&#x02227;</sup>T1, longitudinal relaxation time.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fneur-13-868655-g0001.tif"/>
</fig>
<p>Previous genetic testing for Becker muscular dystrophy and facioscapulohumeral muscular dystrophy (FSHD) was negative. The patient had also undergone targeted sequencing of the fukutin related protein (<italic>FKRP</italic>) gene, which was normal. Next generation sequencing (NGS) using a custom-designed 336 gene neuromuscular panel (PathWest Laboratory, Australia) (<xref ref-type="bibr" rid="B10">10</xref>) revealed homozygosity for a novel splice variant [c.294&#x0002B;5G&#x0003E;A; p.(Ala98Ins4<sup>&#x0002A;</sup>)] in intron 5 of the <italic>ANO5</italic> gene (ClinVar <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/clinvar/variation/1326848/?new_evidence=true">https://www.ncbi.nlm.nih.gov/clinvar/variation/1326848/?new_evidence=true</ext-link>).</p>
<p>While <italic>in silico</italic> analysis was not indicative of a likely splice effect, complementary DNA studies demonstrated intron inclusion and a complete absence of normal product (<xref ref-type="fig" rid="F2">Figure 2</xref>). His brother was also found to be homozygous for the same variant on targeted sequencing of <italic>ANO5</italic>.</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>DNA sequence chromatogram for patient 1. <bold>(A)</bold> Normal control mRNA. <bold>(B)</bold> Patient 1 mRNA showing loss of exon 5 donor splice site resulting in intron inclusion and premature termination of protein due to presence of stop codon in variant mRNA.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fneur-13-868655-g0002.tif"/>
</fig></sec>
<sec>
<title>Patient 2</title>
<p>This 55 year-old man presented with slowly progressive lower and upper limb weakness from the age of 35 years. At the time of presentation, he had difficulty rising from the seated position and walking up stairs. There was no significant medical history. There was no family history of muscle weakness.</p>
<p>On examination he had a waddling gait. There was wasting of the calf muscles bilaterally. The other limb muscles were of normal bulk. Tone was normal. There was MRC 4/5 weakness of hip flexion, hip extension, hip adduction, hip abduction, knee flexion and right knee extension. There was MRC 3/5 weakness of left knee extension. There was MRC 4&#x0002B;/5 weakness of elbow flexion and extension bilaterally. Distal upper and lower limb strength was normal (MRC 5/5). Facial, ocular and neck strength was normal (MRC 5/5). Reflexes were reduced in the upper and lower limbs. The sensory examination was normal. The CK was 4,910.</p>
<p>An EMG showed myopathic motor units without abnormal spontaneous activity in the right vastus medialis, vastus lateralis, biceps femoris and medial gastrocnemius. There were fibrillations with reduced recruitment of large motor units in the right tibialis anterior. MRI of the upper and lower limbs showed fatty infiltration and mild atrophy of the posterior calf and thigh muscles along with fatty infiltration and atrophy of the pectoral, latissimus dorsi and teres muscles (<xref ref-type="fig" rid="F1">Figure 1</xref>). An echocardiogram did not show evidence of cardiomyopathy. The patient declined to undergo a muscle biopsy.</p>
<p>Next generation sequencing using a custom-designed 464 gene neuromuscular panel (PathWest Laboratory, Australia) (<xref ref-type="bibr" rid="B10">10</xref>) revealed compound heterozygosity for two variants in the <italic>ANO5</italic> gene; a previously reported pathogenic frameshift variant [c.191dupA; p.(Asn64fs)] in exon 5 that results in a premature stop signal and a novel missense variant [c.952G&#x0003E;C; p.(Ala318Pro)] in exon 10 (ClinVar <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/clinvar/variation/1327991/?new_evidence=false&#x00023;id_first">https://www.ncbi.nlm.nih.gov/clinvar/variation/1327991/?new_evidence=false&#x00023;id_first</ext-link>). Segregation studies were not possible as the patient&#x00027;s first-degree relatives were not available for genetic testing.</p>
</sec>
</sec>
<sec sec-type="discussion" id="s3">
<title>Discussion</title>
<p>We describe two patients presenting with LGMD who were found to have novel <italic>ANO5</italic> variants after NGS using a custom-designed neuromuscular genetic panel. The use of multigene panels is especially helpful for the diagnosis of LGMD R12 as its phenotype can overlap with other types of LGMD (<xref ref-type="bibr" rid="B11">11</xref>) and muscle biopsies in these patients are often non-diagnostic and show non-specific myopathic or dystrophic changes (<xref ref-type="bibr" rid="B7">7</xref>, <xref ref-type="bibr" rid="B12">12</xref>) although skeletal muscle amyloid deposits have been identified in some cases (<xref ref-type="bibr" rid="B13">13</xref>). The identification of disease causing variants with NGS also helps with genetic counseling in those with LGMD by allowing for targeted genetic testing in family members that could be carriers or at risk of inheriting the disease.</p>
<p>Patient 1 was a 35-year-old Iranian man who was homozygous for a novel splice variant [c.294&#x0002B;5G&#x0003E;A; p (Ala98Ins4<sup>&#x0002A;</sup>)]. This variant leads to intron inclusion resulting in premature truncation of the protein, is absent from controls (<xref ref-type="bibr" rid="B14">14</xref>&#x02013;<xref ref-type="bibr" rid="B17">17</xref>) and segregates with disease in the affected sibling (<xref ref-type="bibr" rid="B13">13</xref>, <xref ref-type="bibr" rid="B18">18</xref>) (<xref ref-type="fig" rid="F2">Figure 2</xref> and <xref ref-type="table" rid="T1">Table 1</xref>). Patient 1 has Iranian ancestry. Most reported cases of LGMD R12 have been in European patients (<xref ref-type="bibr" rid="B3">3</xref>). However, LGMD R12 has been reported in patients from the Middle East, including Saudi Arabia (<xref ref-type="bibr" rid="B18">18</xref>), Jordan (<xref ref-type="bibr" rid="B19">19</xref>) and Afghanistan (<xref ref-type="bibr" rid="B20">20</xref>).</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Genetic summary for <italic>ANO5</italic> variants.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Patient</bold></th>
<th valign="top" align="left"><bold>Transcript</bold></th>
<th valign="top" align="left"><bold>hg38</bold></th>
<th valign="top" align="left"><bold>Codon</bold></th>
<th valign="top" align="left"><bold>Amino acid</bold></th>
<th valign="top" align="left"><bold>POPmax</bold></th>
<th valign="top" align="left"><bold><italic>In silico</italic></bold></th>
<th valign="top" align="left"><bold>ACMG-AMP classification</bold></th>
</tr>
<tr>
<th/>
<th valign="top" align="left"><bold>reference</bold></th>
<th/>
<th valign="top" align="left"><bold>variant</bold></th>
<th valign="top" align="left"><bold>change</bold></th>
<th/>
<th valign="top" align="left"><bold>prediction<xref ref-type="table-fn" rid="TN1"><sup>&#x0002A;</sup></xref></bold></th>
<th/>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Patient 1</td>
<td valign="top" align="left">NM_213599.3</td>
<td valign="top" align="left">11:22221215</td>
<td valign="top" align="left">c.294&#x0002B;5G&#x0003E;A</td>
<td valign="top" align="left">p.Ala98Ins4<xref ref-type="table-fn" rid="TN1"><sup>&#x0002A;</sup></xref></td>
<td valign="top" align="left">NR</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Pathogenic (PVS1, PM2, PP1)</td>
</tr>
<tr>
<td valign="top" align="left">Patient 2</td>
<td valign="top" align="left">NM_213599.3</td>
<td valign="top" align="left">11:22250310</td>
<td valign="top" align="left">c.952G&#x0003E;C</td>
<td valign="top" align="left">p.Ala318Pro</td>
<td valign="top" align="left">NR</td>
<td valign="top" align="left">DDD</td>
<td valign="top" align="left">Variant of uncertain significance (PM2, PM3, PP3)</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">NM_213599.3</td>
<td valign="top" align="left">11:22221107</td>
<td valign="top" align="left">c.191dupA</td>
<td valign="top" align="left">p.Asn64fs</td>
<td valign="top" align="left">0.0021</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Pathogenic (PVS1, PS4, PP5)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><italic>ACMG-AMP = American College of Medical Genetics and Genomics - Association for Molecular Pathology (version: 8.4.7 from Varsome), hg38 = human reference genome, NR = allele not previously reported, POPmax = maximum allele frequency in each reference population from 1000GP, ExAC, gnomAD, and ESP</italic>.</p>
<fn id="TN1">
<label>&#x0002A;</label>
<p><italic>= Meta SVM, Meta LR, and M-CAP in silico prediction (&#x0201C;D&#x0201D; = deleterious, &#x0201C;T&#x0201D; = tolerated)</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
<p>Patient 2 was a 55-year-old Caucasian man who was compound heterozygous for the frameshift variant [c.191dupA; p.(Asn64fs)] and a novel missense variant [c.952G&#x0003E;C; p.(Ala318Pro)]. Through a founder effect, the frameshift variant [c.191dupA; p.(Asn64fs)] is the most common pathogenic <italic>ANO5</italic> variant identified in European patients with LGMD R12 (<xref ref-type="bibr" rid="B3">3</xref>). The missense variant [c.952G&#x0003E;C; p.(Ala318Pro)] in patient 2 is absent from controls, is strongly conserved (<xref ref-type="bibr" rid="B21">21</xref>) and predicted to be damaging <italic>in silico</italic> (<xref ref-type="bibr" rid="B22">22</xref>, <xref ref-type="bibr" rid="B23">23</xref>) (<xref ref-type="table" rid="T1">Table 1</xref>). Currently considered a variant of uncertain significance as per the American College of Medical Genetics and Genomics&#x02014;Association for Molecular Pathology (ACMG-AMP) guidelines (<xref ref-type="bibr" rid="B24">24</xref>) additional functional evidence could help elucidate its impact. Detailed, mutation-specific assessments across <italic>ANO5</italic> are lacking in the literature but loss of <italic>ANO5</italic> has been shown to cause defective membrane repair (<xref ref-type="bibr" rid="B1">1</xref>). The novel missense variant we report in patient 2 is located within the first transmembrane domain of the protein (<xref ref-type="bibr" rid="B25">25</xref>) and could influence the effectiveness of membrane transport for repair (ie. coordination of annexins), particularly in muscle where it is highly expressed (<xref ref-type="bibr" rid="B26">26</xref>). The clinical presentation of patient 2 with adult onset, slowly progressive proximal lower limb and biceps weakness and significantly elevated CK is typical of other cases of LGMD R12 reported in the literature (<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B3">3</xref>).</p>
</sec>
<sec sec-type="conclusions" id="s4">
<title>Conclusion</title>
<p><italic>ANO5</italic> variants are not uncommon in LGMD but occur with a spectrum of LGMD severity. Our findings extend the genotypic spectrum of <italic>ANO5</italic> disease and supports the utility of next generation sequencing in the diagnostic process. Further work on understanding disease mechanisms underlying <italic>ANO5</italic> associated LGMD is needed to address relevant therapeutic avenues.</p>
</sec>
<sec sec-type="data-availability" id="s5">
<title>Data Availability Statement</title>
<p>The datasets presented in this article are not readily available because of ethical and privacy restrictions. Requests to access the datasets should be directed to the corresponding author/s.</p>
</sec>
<sec id="s6">
<title>Ethics Statement</title>
<p>Ethical review and approval was not required for the study on human participants in accordance with the local legislation and institutional requirements. The patients/participants provided their written informed consent to participate in this study. Written informed consent was obtained from the individual(s) for the publication of any potentially identifiable images or data included in this article.</p>
</sec>
<sec id="s7">
<title>Author Contributions</title>
<p>FG and MD assisted with the genetic data and review of paper. RH and PM assisted with overall review of the paper. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s8">
<title>Publisher&#x00027;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack><p>The authors thank Jonas Bjorkman (Pathology Queensland) for his contribution of genetic data to <xref ref-type="fig" rid="F2">Figure 2</xref>.</p>
</ack>
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