<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article article-type="research-article" dtd-version="2.3" xml:lang="EN" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Netw. Physiol.</journal-id>
<journal-title>Frontiers in Network Physiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Netw. Physiol.</abbrev-journal-title>
<issn pub-type="epub">2674-0109</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">734332</article-id>
<article-id pub-id-type="doi">10.3389/fnetp.2021.734332</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Network Physiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Neural Synchronization, Chimera States and Sleep Asymmetry</article-title>
<alt-title alt-title-type="left-running-head">Glaze and Bahar</alt-title>
<alt-title alt-title-type="right-running-head">Chimera States and Sleep Asymmetry</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Glaze</surname>
<given-names>Tera A.</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/1439284/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Bahar</surname>
<given-names>Sonya</given-names>
</name>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1141437/overview"/>
</contrib>
</contrib-group>
<aff>
<institution>Department of Physics and Astronomy and Center for Neurodynamics, University of Missouri at St. Louis</institution>, <addr-line>St. Louis</addr-line>, <addr-line>MO</addr-line>, <country>United States</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/835368/overview">Olga Sosnovtseva</ext-link>, University of Copenhagen, Denmark</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/318430/overview">Spase Petkoski</ext-link>, INSERM U1106 Institut de Neurosciences des Syst&#xe8;mes, France</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/43573/overview">Arcady A. Putilov</ext-link>, Independent researcher, Novosibirsk, Russia</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Sonya Bahar, <email>bahars@umsl.edu</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Networks in Sleep and Circadian Systems, a section of the journal Frontiers in Network Physiology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>12</day>
<month>10</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>1</volume>
<elocation-id>734332</elocation-id>
<history>
<date date-type="received">
<day>01</day>
<month>07</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>27</day>
<month>09</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Glaze and Bahar.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Glaze and Bahar</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>We model the dynamics of sleep states in two connected model brain hemispheres, using groups of coupled individual Hindmarsh-Rose neural oscillators. In a single isloated hemisphere, sleep-promoting neurons and wake-promoting neurons exhibit alternating levels of within-group mean field activity, as well as alternating levels of stochastic phase synchronization, as the system moves between simulated day and night. In a two-hemisphere model, we find differences in the behavior of the sleep-promototing or wake-promoting regions between hemispheres, indicative of chimera-like behavior. We observe phase-cluster states, in which different hemispheres exhibit different bursting dynamics, as well as differences in synchronization between hemispheres. This provides a basis for modeling unihemispheric sleep, which occurs naturally in cetaceans and some bird species, among others, as well as asymmetric sleep, which occurs in human subjects suffering from sleep apnea or experiencing the &#x201c;first night effect&#x201d; induced by sleeping in a novel environment.</p>
</abstract>
<kwd-group>
<kwd>chimera states</kwd>
<kwd>neural synchronization</kwd>
<kwd>sleep dynamics</kwd>
<kwd>unihemispheric sleep</kwd>
<kwd>asymmetric sleep</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Sleep is a nearly ubiquitous phenomenon among living organisms. Even the jellyfish <italic>Cassiopea</italic>, which lacks a centralized nervous system, exhibits a sleep-like state (<xref ref-type="bibr" rid="B45">Nath et al., 2017</xref>). Yet the reason for the necessity of sleep, and the processes that control it, are far from well understood, despite a rapidly growing literature on the genetic regulation of sleep and other circadian rhythms in animals (<xref ref-type="bibr" rid="B64">Rijo-Ferreira and Takahashi, 2019</xref>) and plants (<xref ref-type="bibr" rid="B48">Oakenfull and Davis, 2017</xref>; <xref ref-type="bibr" rid="B15">Creux and Harmer, 2019</xref>), and extensive studies of the neural regions controlling sleep states in mammals (<xref ref-type="bibr" rid="B74">Scammell et al., 2017</xref>).</p>
<p>Sleep is an inherently dynamical phenomenon. In the mammalian brain, sleep is modulated by external drives such as the light-dark cycle, and also by an internal circadian rhythm generated within the suprachiasmatic nucleus (SCN) (<xref ref-type="bibr" rid="B41">Moore and Eichler, 1972</xref>), which receives input from external light stimuli (<xref ref-type="bibr" rid="B42">Moore and Lenn, 1972</xref>). In concert with external light stimuli, the SCN moderates a mammal&#x2019;s daily and seasonal rhythms and behaviors (<xref ref-type="bibr" rid="B4">Aton and Herzog, 2005</xref>). Computational studies of sleep dynamics often use empirically-based models of the generated circadian rhythm, rather than simulating neural activity in the SCN. These include the model of <xref ref-type="bibr" rid="B16">Daan et al. (1984)</xref>, who used a skewed sine wave as the circadian drive; a two-oscillator model developed by <xref ref-type="bibr" rid="B81">Strogatz (1987)</xref>; a square array of SCN oscillators (<xref ref-type="bibr" rid="B32">Kunz and Achermann, 2003</xref>); and a light-based model with an additional non-photic input <xref ref-type="bibr" rid="B80">(St. Hilaire et al., 2007</xref>).</p>
<p>From a dynamical standpoint, sleep can be pictured as a phenomenon of neural synchronization modulated by internal pacemakers in the SCN and external drives such as the light-dark cycle. However, the situation is significantly complicated by the fact that various brain regions are involved in mutual excitatory and inhibitory interactions which regulate sleep processes, as will be discussed further below. Moreover, brains have two hemispheres, and sleep is not always symmetric.</p>
<p>Most mammals experience bihemispheric sleep (BHS), in which both hemispheres exhibit the same sleep state at the same time (<xref ref-type="bibr" rid="B59">Rattenborg et al., 2000</xref>; <xref ref-type="bibr" rid="B14">Corsi-Cabrera et al., 2006</xref>). Although not a very common occurrence, interhemispheric asymmetry has been observed in human sleep (<xref ref-type="bibr" rid="B11">Braun et al., 1997</xref>). Asymmetry can arise from separation of the hemispheres through surgery (<xref ref-type="bibr" rid="B14">Corsi-Cabrera et al., 2006</xref>), and also in humans with sleep apnea (<xref ref-type="bibr" rid="B1">Abeyratne et al., 2010</xref>; <xref ref-type="bibr" rid="B63">Rial et al., 2013</xref>), which has been found to correlate with the magnitude of hemispheric asymmetry (<xref ref-type="bibr" rid="B1">Abeyratne et al., 2010</xref>). During normal breathing in sleep, apneic patients exhibit asymmetry; at the onset of an apneic episode, the hemispheres resynchronize (<xref ref-type="bibr" rid="B63">Rial et al., 2013</xref>).</p>
<p>Asymmetry between hemispheres during sleep can also occur in healthy humans, as discovered by <xref ref-type="bibr" rid="B84">Tamaki et al. (2016)</xref>. When humans fall asleep in a new, unfamiliar location, portions of one hemisphere do not sleep as deeply as the other hemisphere, maintaining a heightened awareness of the environment. During this time, unfamiliar sounds will arouse a person more frequently and with faster response time when detected by the more lightly sleeping hemisphere than when detected by the more deeply sleeping hemisphere. This phenomenon has only been observed during the first night in a novel environment and is thus called the &#x201c;first night effect&#x201d;.</p>
<p>Unlike humans, during normal sleep Cetaceans (whales, dolphins and porpoises) allow one hemisphere at a time to sleep while the other maintains vigilance, switching multiple times during a period of rest. This form of sleep is called unihemispheric sleep (UHS), characterized by one hemisphere exhibiting an electroencephalography (EEG) pattern congruent with non-rapid eye movement (NREM) sleep (characterized by high amplitude and low frequency, synchronized), while the other hemisphere shows an EEG pattern that indicates wakefulness (low amplitude and high frequency, desynchronized). The wakeful hemisphere can exhibit intermediate activity between NREM and wakefulness, without dipping so far into sleep that both hemispheres are considered in the same state (<xref ref-type="bibr" rid="B59">Rattenborg et al., 2000</xref>). An early EEG study by <xref ref-type="bibr" rid="B43">Mukhametov et al. (1977)</xref> found simultaneous, independent synchronization and desynchronization in the two hemispheres of the dolphin brain.</p>
<p>Even before the discovery of UHS, some birds&#x2019; ability to fly continuously for days at a time was a scientific puzzle. When did they sleep? Due to the size mismatch between tiny avian subjects and large experimental recording apparatus, studies have been limited (<xref ref-type="bibr" rid="B59">Rattenborg et al., 2000</xref>; <xref ref-type="bibr" rid="B61">Rattenborg, 2017</xref>). Scientists hypothesized, based on visual observations and indirect studies, that birds might fly either using only one hemisphere (UHS), or simply lock their wings and glide (BHS), supported by the evidence that birds are still capable of flight after the connections between the brain and the spinal cord had been severed (<xref ref-type="bibr" rid="B59">Rattenborg et al., 2000</xref>). Indeed, due to newer tracking capabilities, it has been found that great frigatebirds (<italic>Fregata minor</italic>) do utilize both UHS and BHS while they fly. However, the amount of time they spend sleeping during flight was surprisingly small, less than an hour per day (mostly UHS or asymmetric sleep), in contrast to nearly 13&#xa0;h of sleep per day while nesting (<xref ref-type="bibr" rid="B61">Rattenborg, 2017</xref>).</p>
<p>In contrast to studies of birds in flight, birds exhibit UHS conditionally while resting on land. <xref ref-type="bibr" rid="B60">Rattenborg et al. (1999)</xref> studied Mallard ducks (<italic>Anas platyrhynchos</italic>) and showed that, when sleeping in groups, the ducks showed a predilection for sleeping unihemispherically when on the outer edge of the group, with the open eye facing away from the group, presumably to watch for predators. Ducks in the center showed no preference for which eye they held open during UHS, and also exhibited less UHS than those on the outer edge (<xref ref-type="bibr" rid="B60">Rattenborg et al., 1999</xref>). Some species adjust their behavior from UHS to BHS depending on circumstances. For example, eared seals experience UHS while in the water and BHS on land. In the water, they use their &#x201c;awake&#x201d; hemisphere to paddle and keep their face above water to breathe, occasionally switching sides (<xref ref-type="bibr" rid="B59">Rattenborg et al., 2000</xref>). Rapid eye movement (REM) sleep is not present during UHS; it has been suggested that REM has been lost in aquatic mammals due to natural selection in response to predators or other environmental pressures, the need to remain at or regularly return to the surface for air, and/or temperature maintenance (<xref ref-type="bibr" rid="B37">Madan and Jha, 2012</xref>). Consistent with this hypothesis, fur seals have been recently shown to suppress REM sleep for extended periods of time (up to 2&#xa0;weeks) while in the water (<xref ref-type="bibr" rid="B36">Lyamin et al., 2018</xref>).</p>
<p>Many researchers have suggested an analogy between unihemispheric or asymmetric sleep and chimera states (<xref ref-type="bibr" rid="B2">Abrams et al., 2008</xref>; <xref ref-type="bibr" rid="B86">Tinsley et al., 2012</xref>; <xref ref-type="bibr" rid="B50">Panaggio and Abrams, 2015</xref>; <xref ref-type="bibr" rid="B38">Majhi et al., 2019</xref>; <xref ref-type="bibr" rid="B87">Wang and Liu, 2020</xref>). A chimera state is a dynamical state in which subsets of an ensemble of identical, interacting oscillators exhibit distinct dynamical states, such as one group of synchronized oscillators and one group of desynchronized oscillators (<xref ref-type="bibr" rid="B3">Abrams and Strogatz, 2004</xref>). Chimera states have been found in systems of different types of oscillators, including mechanical (<xref ref-type="bibr" rid="B39">Martens et al., 2013</xref>), optical (<xref ref-type="bibr" rid="B25">Hagerstrom et al., 2012</xref>), chemical (<xref ref-type="bibr" rid="B86">Tinsley et al., 2012</xref>; <xref ref-type="bibr" rid="B47">Nkomo et al., 2013</xref>; <xref ref-type="bibr" rid="B88">Wickramasinghe and Kiss, 2013</xref>), and of course neural (<xref ref-type="bibr" rid="B49">Omelchenko et al., 2013</xref>, <xref ref-type="bibr" rid="B27">Hizanidis et al., 2014</xref>; <xref ref-type="bibr" rid="B23">Glaze et al., 2016</xref>, and others; see <xref ref-type="bibr" rid="B38">Majhi et al., 2019</xref> for review). Systems that generate chimera states can also exhibit phase-cluster states, in which different groups exhibit different synchronized oscillatory patterns (<xref ref-type="bibr" rid="B86">Tinsley et al., 2012</xref>). In the present paper, we develop a model of unihemispheric sleep incorporating individual neural oscillators. Unihemispheric sleep was modeled by <xref ref-type="bibr" rid="B29">Kedziora et al. (2012)</xref>, who adapted a preexisting model to create two hemispheres, which alternately switched between sleep and wake states. We take inspiration from this approach, but develop a model based on coupled individual neurons, rather than single equations governing entire regions of the brain. This approach is novel in that it allows for the examination of interactions not only between regions, as can be done with neuronal mass models, but also within regions, using measures such as stochastic phase synchronization (<xref ref-type="bibr" rid="B55">Pikovsky et al., 2001</xref>). As we will show below, asymmetric sleep dynamics are observed in the model, in the form of chimera-like dynamical states, and alternations between levels of synchronization are observed within the sleep-promoting and wake-promoting neural regions throughout the simulated circadian cycle.</p>
</sec>
<sec id="s2">
<title>Model Background and Design</title>
<p>The simplest form of a sleep-wake model is a &#x201c;flip-flop&#x201d; switch based on the interaction between neurons that promote a sleep state (such as those in the ventrolateral preoptic area, or VLPO), and neurons that promote a wake state (such as neurons in the locus coeruleus, or LC). In such models, each state is stable on its own, but an external drive (such as homeostatic sleep pressure) and mutual inhibition between the two groups cause the overall system state to switch from wake to sleep or vice versa (<xref ref-type="bibr" rid="B21">Gallopin et al., 2000</xref>; <xref ref-type="bibr" rid="B40">McGinty and Szymusiak, 2000</xref>; <xref ref-type="bibr" rid="B71">Saper et al., 2001</xref>; <xref ref-type="bibr" rid="B44">Nakao et al., 2007</xref>; <xref ref-type="bibr" rid="B62">Rempe et al., 2010</xref>). <xref ref-type="bibr" rid="B8">Booth and Diniz Behn (2014)</xref> developed a flip-flop-like model that exhibited hysteresis as the external drive was tuned. They showed that their results were comparable to the two-process model developed by <xref ref-type="bibr" rid="B16">Daan et al. (1984)</xref>, which incorporates two separate, interacting processes corresponding to the circadian drive or rhythm, and the sleep propensity, or the homeostatic drive. These approaches were used by <xref ref-type="bibr" rid="B29">Kedziora et al. (2012)</xref> in order to investigate unihemispheric sleep in a two-hemisphere neuronal mass model.</p>
<p>The model used in the present paper combines aspects of these approaches with dynamical models of individual neural oscillators. This allows for the comparison of neural synchronization within subpopulations of oscillators, rather than simply comparisons between brain regions, as in the neural mass models such as those developed by <xref ref-type="bibr" rid="B29">Kedziora et al. (2012)</xref>. For each &#x201c;hemisphere,&#x201d; we consider a small group of neurons <bold>(</bold>typically four neurons, unless otherwise specified) that are active during the wake state (corresponding to AMIN neurons in the locus coeruleus), another group of neurons active during the sleep state (corresponding to the VLPO region), and a circadian pacemaker which drives the state-switching. The sleep and wake groups mutually inhibit each other, and the state of the system is determined by the (more) active group. A schematic diagram for one hemisphere is shown in <xref ref-type="fig" rid="F1">Figure 1</xref>. This can be compared to the approach of <xref ref-type="bibr" rid="B56">Postnova et al. (2009)</xref>, who modeled sleep-wake cycles based on feedback between two individual neurons.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>A representation of the connections between components in the one-hemisphere model. Both the sleep (black circles) and wake (open circles) regions consist of four neurons. Solid arrows represent excitatory projections, and dashed arrows represent inhibitory projections. The notation for the corresponding coupling constant is shown next to each arrow. See text for more details.</p>
</caption>
<graphic xlink:href="fnetp-01-734332-g001.tif"/>
</fig>
<p>The role of the ventrolateral preoptic area (VLPO) in sleep regulation was first recognized with the demonstration of insomnia in rats whose hypothalamic preoptic area had been lesioned (<xref ref-type="bibr" rid="B46">Nauta, 1946</xref>). That the VLPO specifically contains sleep-promoting neurons was not discovered, however, until 1996 (<xref ref-type="bibr" rid="B78">Sherin et al., 1996</xref>). A reciprocal inhibitory relationship has been observed between the VLPO and the wake-promoting regions of the hypothalamus, leading to the use of the VLPO in flip-flop switch models (<xref ref-type="bibr" rid="B21">Gallopin et al., 2000</xref>; <xref ref-type="bibr" rid="B40">McGinty and Szymusiak, 2000</xref>; <xref ref-type="bibr" rid="B71">Saper et al., 2001</xref>; <xref ref-type="bibr" rid="B73">Saper and Lowell, 2014</xref>). VLPO activity has also been simulated in more complex models of sleep-wake dynamics, including that of <xref ref-type="bibr" rid="B54">Phillips and Robinson (2007)</xref>, a model developed to replicate mouse sleep-wake behavior (<xref ref-type="bibr" rid="B5">Diniz Behn et al., 2007</xref>), the two-hemisphere sleep-wake model developed by <xref ref-type="bibr" rid="B29">Kedziora et al. (2012)</xref> to simulate unihemispheric sleep, and others. In the present work, we will associate the sleep-promoting neurons with the VLPO region.</p>
<p>Monoaminergic neurons (typically referred to as AMIN neurons) in the locus coeruleus have been shown to promote wakefulness (<xref ref-type="bibr" rid="B5">Diniz Behn et al., 2007</xref>). The LC and VLPO have reciprocal inhibitory connections (<xref ref-type="bibr" rid="B71">Saper et al., 2001</xref>; <xref ref-type="bibr" rid="B72">Saper et al., 2010</xref>), making AMIN neurons a prime choice to pair with the VLPO for flip-flop switch models. AMIN neurons from the LC are also frequently used in other sleep models to represent a group or region that promotes waking (<xref ref-type="bibr" rid="B5">Diniz Behn et al., 2007</xref>; <xref ref-type="bibr" rid="B54">Phillips and Robinson 2007</xref>). In the present model, we will associate the wake-promoting neurons with AMIN neurons in the locus coeruleus.</p>
<p>In the model used here, the circadian pacemaker is a skewed sine wave with its peak in the early day and the trough occurring in early night, as defined by <xref ref-type="bibr" rid="B16">Daan et al. (1984)</xref>. The input from the pacemaker function is given as<disp-formula id="e1">
<mml:math id="m1">
<mml:mrow>
<mml:msub>
<mml:mi>I</mml:mi>
<mml:mi>c</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.97</mml:mn>
<mml:mo>&#x2061;</mml:mo>
<mml:mi>sin</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>&#x3c9;</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2b;</mml:mo>
<mml:mn>0.22</mml:mn>
<mml:mo>&#x2061;</mml:mo>
<mml:mi>sin</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mn>2</mml:mn>
<mml:mi>&#x3c9;</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2b;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mn>0.07</mml:mn>
<mml:mo>&#x2061;</mml:mo>
<mml:mi>sin</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mn>3</mml:mn>
<mml:mi>&#x3c9;</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2b;</mml:mo>
<mml:mn>0.03</mml:mn>
<mml:mo>&#x2061;</mml:mo>
<mml:mi>sin</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mn>4</mml:mn>
<mml:mi>&#x3c9;</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2b;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mn>0.01</mml:mn>
<mml:mo>&#x2061;</mml:mo>
<mml:mi>sin</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mn>5</mml:mn>
<mml:mi>&#x3c9;</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
<label>(1)</label>
</disp-formula>It has a range from &#x2212;1 to 1, with <inline-formula id="inf1">
<mml:math id="m2">
<mml:mrow>
<mml:mi>&#x3c9;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>2</mml:mn>
<mml:mi>&#x3c0;</mml:mi>
<mml:mo>/</mml:mo>
<mml:mi>T</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula>, where the period <italic>T</italic> is the length of a full day (<xref ref-type="bibr" rid="B16">Daan et al., 1984</xref>). This function is interpreted as combining the internal action of the SCN and the external drive from the light/dark cycle.</p>
<p>Individual neurons are modeled using the three-dimensional version of the Hindmarsh-Rose model (<xref ref-type="bibr" rid="B26">Hindmarsh and Rose, 1984</xref>), which consists of three coupled nonlinear differential equations:<disp-formula id="e2a">
<mml:math id="m3">
<mml:mrow>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>x</mml:mi>
<mml:mo>&#x2d9;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:mi>y</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>a</mml:mi>
<mml:msup>
<mml:mi>x</mml:mi>
<mml:mn>3</mml:mn>
</mml:msup>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>b</mml:mi>
<mml:msup>
<mml:mi>x</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>I</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>z</mml:mi>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3be;</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
<label>(2a)</label>
</disp-formula>
<disp-formula id="e2b">
<mml:math id="m4">
<mml:mrow>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>y</mml:mi>
<mml:mo>&#x2d9;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:mi>c</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mtext>d</mml:mtext>
<mml:msup>
<mml:mi>x</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>y</mml:mi>
</mml:mrow>
</mml:math>
<label>(2b)</label>
</disp-formula>
<disp-formula id="e2c">
<mml:math id="m5">
<mml:mrow>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>z</mml:mi>
<mml:mo>&#x2d9;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:mi>r</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>s</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>x</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>x</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>z</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
<label>(2c)</label>
</disp-formula>Here, <inline-formula id="inf2">
<mml:math id="m6">
<mml:mi>x</mml:mi>
</mml:math>
</inline-formula> is the membrane potential or voltage of the neuron, <inline-formula id="inf3">
<mml:math id="m7">
<mml:mi>y</mml:mi>
</mml:math>
</inline-formula> is the recovery variable, and <inline-formula id="inf4">
<mml:math id="m8">
<mml:mi>z</mml:mi>
</mml:math>
</inline-formula> is the adaptation current. <inline-formula id="inf5">
<mml:math id="m9">
<mml:mi>I</mml:mi>
</mml:math>
</inline-formula> is the applied or external current and controls the bursting behavior of the neuron. Unless otherwise noted, parameters are set as <inline-formula id="inf6">
<mml:math id="m10">
<mml:mrow>
<mml:mi>a</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
<mml:mo>,</mml:mo>
<mml:mtext>&#x2009;</mml:mtext>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>c</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mtext>&#x2009;</mml:mtext>
<mml:mi>d</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>5</mml:mn>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mtext>&#x2009;</mml:mtext>
<mml:mi>r</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.003</mml:mn>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mtext>&#x2009;</mml:mtext>
<mml:mi>s</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>4</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, and <inline-formula id="inf7">
<mml:math id="m11">
<mml:mrow>
<mml:msub>
<mml:mi>x</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1.6</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>. The parameter <inline-formula id="inf8">
<mml:math id="m12">
<mml:mi>&#x3be;</mml:mi>
</mml:math>
</inline-formula> represents a Gaussian white noise term, generated using the <xref ref-type="bibr" rid="B20">Fox et al. (1988)</xref> algorithm as implemented by <xref ref-type="bibr" rid="B12">Braun et al. (1998)</xref>, with <italic>D</italic> &#x3d; 0.005. The model takes on a range of natural frequencies depending on the parameters used. As the current <italic>I</italic> is tuned, uncoupled Hindmarsh-Rose neurons undergo a transition from single spikes to bursting and chaotic dynamics (<xref ref-type="bibr" rid="B92">Gonz&#xe1;lez-Miranda, 2007</xref>). In the single-spiking regime, for example, an uncoupled Hindmarsh-Rose neuron will fire one spike every &#x223c;200&#x2013;400 time units, which are usually treated as milliseconds in order to align with a typical neural firing timescale, depending on the value of <italic>I</italic>.</p>
<p>Wake-promoting region parameters are designated with the subscript <italic>A</italic> (for AMIN), and sleep-promoting region parameters are designated with the subscript <italic>V</italic> (for VLPO). Each neuron receives input from all other neurons as well as the circadian drive. These inputs are combined in the coupling term <inline-formula id="inf9">
<mml:math id="m13">
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, giving, for the <inline-formula id="inf10">
<mml:math id="m14">
<mml:mi>i</mml:mi>
</mml:math>
</inline-formula>th AMIN neuron,<disp-formula id="e3">
<mml:math id="m15">
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:msub>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>V</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2b;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>V</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mo>&#x2b;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mi>I</mml:mi>
<mml:mi>C</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
<label>(3)</label>
</disp-formula>where <inline-formula id="inf11">
<mml:math id="m16">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> represents the coupling coefficient among the AMIN neurons, <inline-formula id="inf12">
<mml:math id="m17">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>V</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is<disp-formula id="e4">
<mml:math id="m18">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>V</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>V</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mi>t</mml:mi>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mtext>&#x3a3;</mml:mtext>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>&#x2260;</mml:mo>
<mml:mi>j</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mi>V</mml:mi>
<mml:mi>j</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mi>n</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
<label>(4)</label>
</disp-formula>with <inline-formula id="inf13">
<mml:math id="m19">
<mml:mrow>
<mml:msub>
<mml:mi>V</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mi>t</mml:mi>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> corresponding to the x-coordinate of the neuron of interest, and <inline-formula id="inf14">
<mml:math id="m20">
<mml:mrow>
<mml:msub>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mi>n</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> the number of neurons in the AMIN group, with summation over all neurons in the AMIN group except the neuron of interest. The coefficient <inline-formula id="inf15">
<mml:math id="m21">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> corresponds to the coupling strength from the VLPO to the AMIN region, with<disp-formula id="e5">
<mml:math id="m22">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>V</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>V</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mi>t</mml:mi>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mtext>&#x3a3;</mml:mtext>
<mml:mi>j</mml:mi>
</mml:msub>
<mml:msub>
<mml:mi>V</mml:mi>
<mml:mi>j</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mi>n</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
<label>(5)</label>
</disp-formula>where the second term in the brackets corresponds to the mean field of the VLPO region. Lastly, the coefficient <inline-formula id="inf16">
<mml:math id="m23">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> gives the coupling strength of the circadian drive (1) to the neuron of interest. For the sleep-promoting VLPO neurons, analogous equations are used, with<disp-formula id="e6">
<mml:math id="m24">
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:msub>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>V</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2b;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>V</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mo>&#x2b;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mi>I</mml:mi>
<mml:mi>C</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
<label>(6)</label>
</disp-formula>
<disp-formula id="e7">
<mml:math id="m25">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>V</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>V</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mi>t</mml:mi>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mtext>&#x3a3;</mml:mtext>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>&#x2260;</mml:mo>
<mml:mi>j</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mi>V</mml:mi>
<mml:mi>j</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mi>n</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
<label>(7)</label>
</disp-formula>
<disp-formula id="e8">
<mml:math id="m26">
<mml:mrow>
<mml:mo>&#xa0;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mover accent="true">
<mml:mi>V</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>V</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mi>t</mml:mi>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mtext>&#x3a3;</mml:mtext>
<mml:mi>j</mml:mi>
</mml:msub>
<mml:msub>
<mml:mi>V</mml:mi>
<mml:mi>j</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mi>n</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
<label>(8)</label>
</disp-formula>and summation in <xref ref-type="disp-formula" rid="e7">Eq. 7</xref> over the VLPO neurons except the neuron of interest, and the summation in <xref ref-type="disp-formula" rid="e8">Eq. 8</xref> over the AMIN neurons.</p>
<p>To make the wake neurons active during the day, at the peak of the circadian drive (CD), and inactive during the night, at the trough of CD, the projection from CD to the AMIN region is excitatory, and the projection from CD to the VLPO region is inhibitory. The time delay <inline-formula id="inf17">
<mml:math id="m27">
<mml:mi>&#x3c4;</mml:mi>
</mml:math>
</inline-formula> corresponds to the finite time needed for signal transmission. This delay is shorter for the neurons within a region and is longer between regions. These delays are set as <inline-formula id="inf18">
<mml:math id="m28">
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>10.40</mml:mn>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>m</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> for neurons within one group, and <inline-formula id="inf19">
<mml:math id="m29">
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>21.00</mml:mn>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>m</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> between neurons in different groups. The model is implemented using a custom-written MATLAB code, using Euler integration with a step size of <inline-formula id="inf20">
<mml:math id="m30">
<mml:mrow>
<mml:mi>d</mml:mi>
<mml:mi>t</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.01</mml:mn>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>m</mml:mi>
<mml:mi>s</mml:mi>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> The simulation is started from heterogeneous initial conditions, with values of the &#x201c;voltage&#x201d; variable <italic>x</italic> uniformly distributed between &#x2212;2 and 2, and the <italic>y</italic> and <italic>z</italic> variables initialized to zero.</p>
<p>Synchronization within and between groups is assessed using stochastic phase synchronization analysis. Briefly, two oscillators are considered synchronized if their phase difference <inline-formula id="inf21">
<mml:math id="m31">
<mml:mi>&#x3d5;</mml:mi>
</mml:math>
</inline-formula> remains relatively constant over time. The 1:1 phase difference between two neurons, <italic>i</italic> and <italic>k</italic>, is defined as<disp-formula id="e9">
<mml:math id="m32">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3d5;</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>k</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>2</mml:mn>
<mml:mi>&#x3c0;</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>/</mml:mo>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
<label>(9)</label>
</disp-formula>where neuron <italic>i</italic> spikes at time <inline-formula id="inf22">
<mml:math id="m33">
<mml:mrow>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, while <inline-formula id="inf23">
<mml:math id="m34">
<mml:mrow>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula id="inf24">
<mml:math id="m35">
<mml:mrow>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> are two sequential spike times for neuron <inline-formula id="inf25">
<mml:math id="m36">
<mml:mi>k</mml:mi>
</mml:math>
</inline-formula>, and <inline-formula id="inf26">
<mml:math id="m37">
<mml:mrow>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
<mml:mo>&#x3c;</mml:mo>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mo>&#x3c;</mml:mo>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>. The more <inline-formula id="inf27">
<mml:math id="m38">
<mml:mi>&#x3d5;</mml:mi>
</mml:math>
</inline-formula> changes, the less synchronized the neurons are. Synchronization can be quantified using the synchronization index<disp-formula id="e10">
<mml:math id="m39">
<mml:mrow>
<mml:msubsup>
<mml:mi>&#x3b3;</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>k</mml:mi>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msubsup>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2329;</mml:mo>
<mml:mi>cos</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mrow>
<mml:mo>&#x2329;</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3d5;</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>k</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo>&#x232A;</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>sin</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mrow>
<mml:mo>&#x2329;</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3d5;</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>k</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>t</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo>&#x232A;</mml:mo>
<mml:mo>&#x232A;</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
</mml:math>
<label>(10)</label>
</disp-formula>where the brackets denote time averages. This corresponds to the intensity of the first Fourier mode of the distribution of phase differences. If <inline-formula id="inf28">
<mml:math id="m40">
<mml:mi>&#x3b3;</mml:mi>
</mml:math>
</inline-formula> is equal to 1, the oscillators are perfectly synchronized, while if <inline-formula id="inf29">
<mml:math id="m41">
<mml:mrow>
<mml:mi>&#x3b3;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, they are completely desynchronized (<xref ref-type="bibr" rid="B55">Pikovsky et al., 2001</xref>).</p>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<p>The Hindmarsh-Rose model exhibits different bursting states as the parameter <inline-formula id="inf30">
<mml:math id="m42">
<mml:mi>I</mml:mi>
</mml:math>
</inline-formula> is tuned in <xref ref-type="disp-formula" rid="e2a">Eq. 2a</xref> (<xref ref-type="bibr" rid="B92">Gonz&#xe1;lez-Miranda, 2007</xref>). We investigated the dynamics of the single hemisphere model described above and shown schematically in <xref ref-type="fig" rid="F1">Figure 1</xref>, for values of <inline-formula id="inf31">
<mml:math id="m43">
<mml:mi>I</mml:mi>
</mml:math>
</inline-formula> in both the single-spiking and the bursting regimes. All other parameters were held constant at <inline-formula id="inf32">
<mml:math id="m44">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.000045</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf33">
<mml:math id="m45">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>7.5</mml:mn>
<mml:mi>x</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>6</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf34">
<mml:math id="m46">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>4.25</mml:mn>
<mml:mi>x</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>5</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf35">
<mml:math id="m47">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1.28</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf36">
<mml:math id="m48">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1.15</mml:mn>
<mml:mi>x</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf37">
<mml:math id="m49">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0019</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>. Parameters are identical for the VLPO and AMIN neurons; they are differentiated only by their interactions with the circadian drive.</p>
<p>For the case in which uncoupled neurons exhibit single spikies (<inline-formula id="inf38">
<mml:math id="m50">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1.28</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>), the AMIN neurons were active during simulated &#x201c;day&#x201d; (defined by the positive half-cycle of the circadian oscillation) while the VLPO neurons were completely inactive. During the simulated &#x201c;night&#x201d; (defined by the negative half-cycle of the circadian oscillation), the reverse was observed: the VLPO neurons were active, while the AMIN neurons were completely inactive. For parameters for which uncoupled neurons exhibit bursting dynamics (<inline-formula id="inf39">
<mml:math id="m51">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1.75</mml:mn>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>2.0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>), both the AMIN and VLPO neurons remained active during both the simulated &#x201c;day&#x201d; and &#x201c;night.&#x201d; However, the average activity (mean field) of AMIN was greater than that of VLPO at the peak of the circadian drive cycle, while the VLPO mean field was greater during the simulated night.</p>
<p>Synchronization within the AMIN and VLPO groups was assessed using phase synchronization analysis, as described in the previous section, with a sliding window 100 spikes wide and a step forward of one spike, allowing for the analysis of the synchronization index as a function of time. In the bursting regime, greater synchronization was observed in the AMIN neurons during the night, and greater synchronization in the VLPO neurons during the day. In other words, synchronization correlated inversely with overall activity, as shown in <xref ref-type="fig" rid="F2">Figure 2A</xref>, for <inline-formula id="inf40">
<mml:math id="m52">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>2.0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>. Synchronization indices are averaged over all non-identical pairs of neurons in each region, and over ten replicate data sets. (Note that synchronization could not be assessed in the single-spiking regime during the night for AMIN or the day for VLPO, since those regions were entirely quiescent during those intervals, and thus comparison of day/night synchrony is only possible for the bursting regime.)</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>
<bold>(A)</bold> Synchronization indices averaged over all non-identical pairs of neurons the VLPO region (black trace) and the AMIN region (red trace) in the single hemisphere model using a sliding window of 100 spikes, and over ten replicate data sets. Parameters are <inline-formula id="inf41">
<mml:math id="m53">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.000045</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf42">
<mml:math id="m54">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>7.5</mml:mn>
<mml:mi>x</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>6</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf43">
<mml:math id="m55">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>4.25</mml:mn>
<mml:mi>x</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>5</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf44">
<mml:math id="m56">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>2.00</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf45">
<mml:math id="m57">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1.15</mml:mn>
<mml:mi>x</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf46">
<mml:math id="m58">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0019</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>. Three minutes of simulated time corresponds to one &#x201c;day&#x201d;, in which the circadian drive (not shown) completes a full cycle. <bold>(B)</bold> Synchronization indices for a shuffled data set, calculated using a sliding window of 100 spikes, for VLPO (black trace) and AMIN (red trace).</p>
</caption>
<graphic xlink:href="fnetp-01-734332-g002.tif"/>
</fig>
<p>In order to confirm that the ordering of the spike trains was responsible for the synchronization, the spike times were shuffled while retaining the distribution of interspike intervals. <xref ref-type="fig" rid="F2">Figure 2B</xref> shows the averaged synchronization index, again using a 100-spike sliding window, between the shuffled spike trains from all non-identical neuron pairs for one of the ten data sets. The synchronization is markedly decreased in comparison to the indices shown in <xref ref-type="fig" rid="F2">Figure 2A</xref>, and no difference is observed between the indices for the AMIN and VLPO neural pairs. Similar results are obtained upon shuffling the other data sets used to generate <xref ref-type="fig" rid="F2">Figure 2A</xref>.</p>
<p>The single hemisphere model shown in <xref ref-type="fig" rid="F1">Figure 1</xref> can be extended to a two-hemisphere model, shown schematically in <xref ref-type="fig" rid="F3">Figure 3</xref>. Each hemisphere has its own VLPO and AMIN regions, each consisting of a group of individual neurons. The circadian drive projects to each of the VLPO and AMIN regions in the same fashion as the single-hemisphere model. The hemispheres communicate <italic>via</italic> excitatory connections (solid arrows) between the VLPO regions. This form of the model was inspired by the two-hemisphere sleep-wake model designed by <xref ref-type="bibr" rid="B29">Kedziora et al. (2012)</xref>. With the exception of the added excitatory coupling between VLPO regions, the parameters in the two-hemisphere model use the same naming scheme as in <xref ref-type="fig" rid="F1">Figure 1</xref>. For the new cross-hemispheric VLPO connections, the coupling constants are given as <inline-formula id="inf47">
<mml:math id="m59">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> (left VLPO to right VLPO) and <inline-formula id="inf48">
<mml:math id="m60">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> (right VLPO to left VLPO). Parameters are identical for both hemispheres, and the interhemispheric coupling is symmetric (<inline-formula id="inf49">
<mml:math id="m61">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>). The terms &#x201c;left&#x201d; and &#x201c;right&#x201d; are arbitrary designations for the hemispheres; there is no explicit spatial orientation in the model.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>A schematic representation of the two-hemisphere version of the model. Connections within each hemisphere are identical those shown in <xref ref-type="fig" rid="F1">Figure 1</xref>, though the circadian drive now projects to the AMIN and VLPO regions in each hemisphere. Additionally, excitatory connections are added between the right and left VLPO regions. See text for details.</p>
</caption>
<graphic xlink:href="fnetp-01-734332-g003.tif"/>
</fig>
<p>The two-hemisphere model can generate chimera states in which the hemispheres exhibit significantly different dynamical behaviors. The mean field activity for each hemisphere, when the system is in the single-spiking regime (<inline-formula id="inf50">
<mml:math id="m62">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1.295</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>), is shown in <xref ref-type="fig" rid="F4">Figure 4</xref>. Here, as for the single-hemisphere single-spiking regime, the wake-promoting AMIN region is only active during the day, while the sleep-promoting region VLPO is only active during the night. Even though the parameters of each hemisphere are set identically, the hemispheres exhibit independent variations in mean field activity. The right VLPO, for example, is much more active during the first night than the left. Variations in the synchronization indices between the active regions in the two hemispheres are also observed (data not shown).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Mean field activity in the two-hemisphere model in the regime where uncoupled neurons fire single spikes. The mean field is calculated as the average value of the x variable over all neurons in any give group at each time point. The vertical axis is labeled with &#x201c;voltage&#x201d; in units of &#x201c;mV&#x201d; to reflect the fact that this variable is analogous to the transmembrane potential. The mean field activity of the &#x201c;left&#x201d; hemisphere is shown in the top panel, and that of the &#x201c;right&#x201d; hemisphere in the bottom panel. AMIN activity is shown in red, and VLPO is shown in black. The circadian oscillations given in <xref ref-type="disp-formula" rid="e1">Eq. 1</xref> are shown with the blue dashed line. Parameters are <inline-formula id="inf51">
<mml:math id="m63">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.000045</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf52">
<mml:math id="m64">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000075</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf53">
<mml:math id="m65">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000425</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf54">
<mml:math id="m66">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00115</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf55">
<mml:math id="m67">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0019</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf56">
<mml:math id="m68">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00002</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, and <inline-formula id="inf57">
<mml:math id="m69">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1.295</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, with four neurons per region.</p>
</caption>
<graphic xlink:href="fnetp-01-734332-g004.tif"/>
</fig>
<p>The mean field activity of the VLPO and AMIN for <inline-formula id="inf58">
<mml:math id="m70">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1.30</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, still in the single-spiking regime, is shown in <xref ref-type="fig" rid="F5">Figure 5</xref>. Interhemispheric asymmetries are evident, especially for the VLPO region at night. Magnification of representative mean field dynamics for each region is shown in <xref ref-type="fig" rid="F5">Figures 5B,C</xref>. In <xref ref-type="fig" rid="F5">Figure 5B</xref>, the left hemisphere AMIN exhibits tight clusters of multi-spike bursts, while the right hemisphere shows double spikes, indicating that all the neurons are simultaneously firing doublets. This difference in behavior between coupled identical groups is characteristic of a phase-cluster chimera state (<xref ref-type="bibr" rid="B86">Tinsley et al., 2012</xref>). In <xref ref-type="fig" rid="F5">Figure 5C</xref>, the VLPO also exhibits a phase-cluster chimera state, with tight, clustered firing in the right hemisphere, and nearly evenly-spaced cascades of spike pairs in the left hemisphere.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Phase-cluster chimera states are observed between hemispheres. <bold>(A)</bold> Mean field activity of the &#x201c;left&#x201d; hemisphere is shown in the top panel, and that of the &#x201c;right&#x201d; hemisphere in the bottom panel. AMIN activity is shown in red, and VLPO is shown in black. The circadian oscillations given in <xref ref-type="disp-formula" rid="e1">Eq. 1</xref> are shown with the blue dashed line. Parameters are <inline-formula id="inf59">
<mml:math id="m71">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.000045</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf60">
<mml:math id="m72">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000075</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf61">
<mml:math id="m73">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000425</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf62">
<mml:math id="m74">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00115</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf63">
<mml:math id="m75">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0019</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf64">
<mml:math id="m76">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00002</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, and <inline-formula id="inf65">
<mml:math id="m77">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1.3</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, with 3 neurons per region. <bold>(B)</bold> Magnification of a time interval from panel <bold>(A)</bold>, 34&#x2013;36s. <bold>(C)</bold> Magnification of panel A, 135&#x2013;137s.</p>
</caption>
<graphic xlink:href="fnetp-01-734332-g005.tif"/>
</fig>
<p>Moving into the bursting regime, with <inline-formula id="inf66">
<mml:math id="m78">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>2.00</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, the neurons of all regions fire over the entire day, as in the single-hemisphere simulations, though there is interhemispheric asymmetry in the activity level (<xref ref-type="fig" rid="F6">Figure 6A</xref>). Zooming in on an interval of daytime activity (from 122 to 124&#xa0;s) shows tight, clustered firing for AMIN in the left and VLPO in the right hemisphere, and a cascading firing pattern for VLPO in the left and AMIN in the right hemisphere (6B). This different behavior for both regions across hemispheres is again evidence of a phase-cluster chimera state. As with many other studies of chimera-like behavior (<xref ref-type="bibr" rid="B89">Wolfrum and Omel&#x2019;chenko, 2011</xref>), this phase-cluster state is transient, and does not persist throughout the entire duration of the simulation. We note that the frequency of the mean field oscillations of the coupled system (see <xref ref-type="fig" rid="F5">Figures 5B,C</xref>, <xref ref-type="fig" rid="F6">6C</xref>) will not be a simple average of the frequencies of the individual oscillators; see <xref ref-type="bibr" rid="B51">Petkoski et al. (2013)</xref> for a detailed investigation of how the mean field of a system of coupled oscillators relates to the individual oscillator frequencies.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>Phase-cluster states in the bursting regime for the two-hemisphere model. <bold>(A)</bold> Mean field activity is shown for the left (top panel) and right (bottom panel) hemispheres. AMIN activity is shown in red, and VLPO is shown in black. The circadian oscillations given in <xref ref-type="disp-formula" rid="e1">Eq. 1</xref> are shown with the blue dashed line. <bold>(B)</bold> Magnification of a time interval from <bold>(A)</bold>, 122&#x2013;124s, with the top panel showing mean field activity from the left hemisphere and the lower panel showing mean field activity from the right hemisphere. Parameters are <inline-formula id="inf67">
<mml:math id="m79">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.000045</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf68">
<mml:math id="m80">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000075</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf69">
<mml:math id="m81">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000425</mml:mn>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00115</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf70">
<mml:math id="m82">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0019</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf71">
<mml:math id="m83">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00002</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, and <inline-formula id="inf72">
<mml:math id="m84">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>2.00</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, with 3 neurons per region.</p>
</caption>
<graphic xlink:href="fnetp-01-734332-g006.tif"/>
</fig>
<p>The results shown in <xref ref-type="fig" rid="F6">Figure 6</xref> can be quantified using the synchronization index, which reveals significantly different levels of synchronization between the left and right hemispheres (<xref ref-type="fig" rid="F7">Figure 7</xref>). Note that the VLPO regions have similar synchronization during the day, but the left hemisphere VLPO is significantly more synchronized at night. This implies that the VLPO regions, which can be classified as exhibiting a phase-cluster chimera state based on the bursting state differences shown in <xref ref-type="fig" rid="F6">Figure 6B</xref>, could also be described as exhibiting a classical dynamical chimera state (in which one group is synchronized and the other is comparatively desynchronized) at night. Likewise, the right hemisphere AMIN region is significantly more synchronized than the left AMIN region during the day, again indicative of a classical chimera state. This can be illustrated more clearly, for example, for the VLPO region, by showing the synchronization indices of the right and left VLPO on the same plot (<xref ref-type="fig" rid="F8">Figure 8</xref>).</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>Synchronization indices calculated over a 10-spike sliding window for each hemisphere, with a one-spike step forward, from data shown in <xref ref-type="fig" rid="F6">Figure 6</xref>. AMIN synchronization indices are shown in red, and VLPO is shown in black. <bold>(A)</bold> Left hemisphere synchronization. <bold>(B)</bold> Right hemisphere synchronization. Parameters are <inline-formula id="inf73">
<mml:math id="m85">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.000045</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf74">
<mml:math id="m86">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000075</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf75">
<mml:math id="m87">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000425</mml:mn>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00115</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>
<italic>,</italic> <inline-formula id="inf76">
<mml:math id="m88">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0019</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf77">
<mml:math id="m89">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00002</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, and <inline-formula id="inf78">
<mml:math id="m90">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>2.00</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, with 3 neurons per region. The multiple lines in the synchronization index are a result of averaging over a short time window in the presence of burst-firing.</p>
</caption>
<graphic xlink:href="fnetp-01-734332-g007.tif"/>
</fig>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption>
<p>Synchronization indices calculated over a 10-spike sliding window for the left and right VLPO, with a one-spike step forward, from data shown in <xref ref-type="fig" rid="F6">Figures 6</xref>, <xref ref-type="fig" rid="F7">7</xref>. This figure combines the VLPO synchronization indices from <xref ref-type="fig" rid="F7">Figure 7</xref> for ease of visual comparison. The left hemisphere VLPO is shown with the black trace, and the right with the blue trace. Parameters are <inline-formula id="inf79">
<mml:math id="m91">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.000045</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf80">
<mml:math id="m92">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000075</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf81">
<mml:math id="m93">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000425</mml:mn>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00115</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf82">
<mml:math id="m94">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0019</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf83">
<mml:math id="m95">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00002</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, and <inline-formula id="inf84">
<mml:math id="m96">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>2.00</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, with 3 neurons per region. Note the difference in synchronization indices during the second half of the time series (simulated &#x201c;night&#x201d;).</p>
</caption>
<graphic xlink:href="fnetp-01-734332-g008.tif"/>
</fig>
<p>
<xref ref-type="bibr" rid="B29">Kedziora et al. (2012)</xref> found that inhibitory connections were necessary for the production of UHS in a computational model. Inhibitory coupling is also more likely to produce chimera states, though excitatory coupling can produce chimeras as well (<xref ref-type="bibr" rid="B86">Tinsley et al., 2012</xref>; <xref ref-type="bibr" rid="B23">Glaze et al., 2016</xref>). The results shown above all involve symmetric excitatory coupling between the hemispheres (<inline-formula id="inf85">
<mml:math id="m97">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3e;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>). For symmetric inhibitory interhemispheric coupling (<inline-formula id="inf86">
<mml:math id="m98">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3c;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>), chimera-like behavior is also observed. This is shown in <xref ref-type="fig" rid="F9">Figure 9</xref>, where the VLPO regions exhibit significantly different degrees of synchronization on successive nights. <xref ref-type="fig" rid="F10">Figure 10</xref> also illustrates such behavior, but also shows interhemispheric switching: the left VLPO remains more synchronized during the first night, while the right is more synchronized on the second night. Other simulations with inhibitory coupling show asymmetric sleep (a wide synchronization gap between the right and left VLPO regions) punctuated by a brief collapse into symmetric BHS before a return to asymmetry, reminiscent of the shifts known to occur in patients with sleep apnea. This instance of apneic sleep demonstrates that the model is able to simulate not only UHS and asymmetric sleep, but also changes in sleep state associated with a sleep disorder.</p>
<fig id="F9" position="float">
<label>FIGURE 9</label>
<caption>
<p>Synchronization indices calculated over a 10-spike window with a 1-spike step forward, for left (black line) and right (blue line) hemisphere VLPO, showing asymmetric sleep with inhibitory coupling between the hemispheres. Parameters are <inline-formula id="inf87">
<mml:math id="m99">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.000045</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf88">
<mml:math id="m100">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000275</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf89">
<mml:math id="m101">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000425</mml:mn>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00115</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf90">
<mml:math id="m102">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0019</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf91">
<mml:math id="m103">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.00002</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, and <inline-formula id="inf92">
<mml:math id="m104">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>2.00</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, with 3 neurons per region.</p>
</caption>
<graphic xlink:href="fnetp-01-734332-g009.tif"/>
</fig>
<fig id="F10" position="float">
<label>FIGURE 10</label>
<caption>
<p>Synchronization indices calculated with a 10-spike sliding window and a 1-spike step forward for left (black line) and right (blue line) hemisphere VLPO, with inhibitory interhemispheric coupling. Note the interhemispheric switching: the right VLPO is more synchronized on the first night, and the left VLPO on the second. Parameters are <inline-formula id="inf93">
<mml:math id="m105">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mi>V</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.000045</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf94">
<mml:math id="m106">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000275</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf95">
<mml:math id="m107">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>V</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0000425</mml:mn>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>A</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0.00115</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>
<italic>,</italic> <inline-formula id="inf96">
<mml:math id="m108">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.0019</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf97">
<mml:math id="m109">
<mml:mrow>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>R</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.000025</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, and <inline-formula id="inf98">
<mml:math id="m110">
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>2.25</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, with 3 neurons per region.</p>
</caption>
<graphic xlink:href="fnetp-01-734332-g010.tif"/>
</fig>
</sec>
<sec id="s4">
<title>Discussion and Conclusions</title>
<p>We have presented a model of sleep dynamics based on coupled subgroups of individual Hindmarsh-Rose neurons and a circadian drive. In contrast to neuronal mass models such as that of <xref ref-type="bibr" rid="B29">Kedziora et al. (2012)</xref>, this approach allows for the investigation of the synchronization within, as well as between, subgroups. We observe changes in synchronization within the sleep-promoting region and within the wake-promoting region as the system transitions from day to night (<xref ref-type="fig" rid="F2">Figure 2</xref>). In a two-hemisphere version of the model, shown schematically in <xref ref-type="fig" rid="F3">Figure 3</xref>, we find chimera-like and phase cluster states analogous to both asymmetric bihemispheric sleep (BHS), and unihemispheric sleep for both excitatory and inhibitory interhemispheric coupling (<xref ref-type="fig" rid="F5">Figures 5</xref>&#x2013;<xref ref-type="fig" rid="F9">9</xref>). We also observe interhemispheric switching (<xref ref-type="fig" rid="F10">Figure 10</xref>). These results indicate that chimera dynamics in coupled neural models can be used to model the unique dynamically asymmetric sleep states observed in a wide range of species, including human subjects suffering from pathological sleep conditions such as sleep apnea (<xref ref-type="bibr" rid="B1">Abeyratne et al., 2010</xref>; <xref ref-type="bibr" rid="B63">Rial et al., 2013</xref>) and the asymmetric sleep observed in the &#x201c;first night effect&#x201d; (<xref ref-type="bibr" rid="B84">Tamaki et al., 2016</xref>).</p>
<p>In <xref ref-type="fig" rid="F2">Figure 2</xref>, the AMIN neurons are observed to have higher synchronization than the VLPO during the simulated night, while they are less synchronized than the VLPO during the simulated day. While this result is consistently observed in the model, the result should not be overinterpreted. A similarly structured model (<xref ref-type="bibr" rid="B22">Glaze, 2019</xref>) using a Hodgkin-Huxley-type neural model, the Huber-Braun model (<xref ref-type="bibr" rid="B12">Braun et al., 1998</xref>), shows more synchronization in AMIN than VLPO during the day and less at night, suggesting that there may be significant model-dependence in the dynamics. Single-unit recordings from sleep-promoting and wake-promoting neurons <italic>in situ</italic> would provide an experimental test of whether such synchronization differences exist, and studies using cultured cells on a chip could determine what neuronal properties lead to state-dependent differences in synchrony.</p>
<p>At the whole brain level, EEG recordings suggest that human brain activity is more synchronized during sleep (<xref ref-type="bibr" rid="B30">Krueger et al., 2008</xref>; <xref ref-type="bibr" rid="B17">de Andr&#xe9;s et al., 2011</xref>; <xref ref-type="bibr" rid="B75">Schwartz and Kilduff, 2015</xref>), but this data does not provide resolution at the level of small nuclei within the brain. The results in <xref ref-type="fig" rid="F2">Figure 2</xref> suggest the hypothesis that relative changes in neural synchrony may occur between sleep-promoting and wake-promoting nuclei during the circadian cycle. This could be investigated with single unit recordings in <italic>in vitro</italic> studies such as brain slice experiments, including cells from the SCN, VLPO, and locus coeruleus, as well as <italic>in vivo</italic> recordings. Reciprocally, further model development will be informed by experimental measurements of local synchronization dynamics <italic>in vitro</italic> and in the intact brain, for example single-unit recordings like those of <xref ref-type="bibr" rid="B83">Takahashi et al. (2010)</xref> in the locus coeruleus, and <xref ref-type="bibr" rid="B68">Sakai (2014)</xref> in the SCN.</p>
<p>Like other models of neural chimera states (<xref ref-type="bibr" rid="B23">Glaze et al., 2016</xref>; <xref ref-type="bibr" rid="B70">Santos et al., 2017</xref>; <xref ref-type="bibr" rid="B38">Majhi et al., 2019</xref>), the present model includes a Gaussian white noise term (<xref ref-type="disp-formula" rid="e2a">Eq. 2a</xref>). While this produces instantaneous differences between the simulated hemispheres, these differences will average to zero, since the noise is applied using an identical algorithm to each neuron at each time step. The differences observed between the dynamical behavior of the two hemispheres, as shown in <xref ref-type="fig" rid="F5">Figures 5</xref>, <xref ref-type="fig" rid="F6">6</xref>, moreover, are over a much greater time scale than these instantaneous fluctuations, which occur on the time scale of the integration time step. Chimera states have been found to be robust to the presence of noise (<xref ref-type="bibr" rid="B33">Laing, 2012</xref>; <xref ref-type="bibr" rid="B50">Panaggio and Abrams, 2015</xref>; <xref ref-type="bibr" rid="B34">Loos et al., 2016</xref>; <xref ref-type="bibr" rid="B13">Bukh et al., 2018</xref>); tuning the noise amplitude has been shown to affect the lifetime of chimera states (<xref ref-type="bibr" rid="B90">Zakharova et al., 2016</xref>), and a coherence resonance effect has been observed in which an intermediate amount of noise enhances the occurrence of chimera states (<xref ref-type="bibr" rid="B76">Semenova et al., 2016</xref>; <xref ref-type="bibr" rid="B91">Zakharova et al., 2017</xref>; <xref ref-type="bibr" rid="B85">Tang et al., 2019</xref>; <xref ref-type="bibr" rid="B87">Wang and Liu, 2020</xref>).</p>
<p>The model described here could be further developed with the addition of realistic features other than noise. For example, the circadian drive could be decoupled into an intrinsic SCN rhythm and an external drive, in order to examine the effects of circadian misalignment (<xref ref-type="bibr" rid="B19">Fischer et al., 2016</xref>), jet lag (<xref ref-type="bibr" rid="B65">Sack et al., 2007a</xref>; <xref ref-type="bibr" rid="B66">Sack et al., 2007b</xref>) and drugs such as caffeine (<xref ref-type="bibr" rid="B57">Puckeridge et al<italic>.</italic>, 2011</xref>) or other non-photic stimuli (<xref ref-type="bibr" rid="B80">St. Hilaire et al., 2007</xref>).</p>
<p>An additional wake-promoting region, such as orexinergic (ORX) neurons from the lateral hypothalamic area (LHA) could shift the dynamics of the model. These neurons release the neurotransmitter orexin (also called hypocretin), a crucial element of sleep-wake regulation. Lack of orexin can cause narcolepsy (<xref ref-type="bibr" rid="B69">Sakurai, 2007</xref>; <xref ref-type="bibr" rid="B75">Schwartz and Kilduff, 2015</xref>). ORX is present in many models of sleep, including the UHS model developed by <xref ref-type="bibr" rid="B29">Kedziora et al. (2012)</xref> and the sleep/wake flip-flop model of <xref ref-type="bibr" rid="B62">Rempe et al. (2010)</xref>. The ORX neurons of LHA interact with both VLPO and AMIN (<xref ref-type="bibr" rid="B73">Saper and Lowell, 2014</xref>), and could strengthen and stabilize the wake state, as well as provide additional factors regulating the emergence of chimera-like states.</p>
<p>In conjunction with the circadian drive, the homeostatic drive builds up sleep pressure as time spent awake accumulates, and decreases sleep pressure with time spent asleep. This relationship was put forward by <xref ref-type="bibr" rid="B9">Borb&#xe9;ly (1982)</xref> and modeled by <xref ref-type="bibr" rid="B16">Daan et al. (1984)</xref>. The homeostatic drive has been proposed to be regulated by neurons in the VLPO and median preoptic nucleus (MnPO) (<xref ref-type="bibr" rid="B24">Gvilia et al., 2006</xref>), as well as by ORX (<xref ref-type="bibr" rid="B56">Postnova et al., 2009</xref>). Addition of a homeostatic drive term to the present model would also allow the investigation of how processes such as sleep debt (<xref ref-type="bibr" rid="B10">Borb&#xe9;ly et al., 2016</xref>) would affect sleep asymmetry.</p>
<p>The effects of other regions involved in sleep regulation such as the MnPO could also be investigated. Located in the hypothalamus, this region promotes the transition from wake to sleep (<xref ref-type="bibr" rid="B24">Gvilia et al., 2006</xref>). Firing ahead of the switch to sleep, MnPO may add to sleep pressure (<xref ref-type="bibr" rid="B72">Saper et al., 2010</xref>). It also inhibits the LHA, promoting the wake-to-sleep transition (<xref ref-type="bibr" rid="B82">Suntsova et al., 2007</xref>), in opposition to the effects of ORX. Another key region in sleep regulation is the extended ventrolateral preoptic nucleus (eVLPO). This region inhibits the REM-off regions in the brain, allowing the transition from NREM to REM sleep (<xref ref-type="bibr" rid="B35">Lu et al., 2006</xref>; <xref ref-type="bibr" rid="B62">Rempe et al., 2010</xref>). The eVLPO exists in a flip-flop switch with both AMIN neurons (which inhibit REM-on regions) and the VLPO (to regulate the switching between NREM and REM sleep) (<xref ref-type="bibr" rid="B62">Rempe et al., 2010</xref>). This region makes inhibitory projections onto the LC, where the AMIN neurons reside (<xref ref-type="bibr" rid="B72">Saper et al., 2010</xref>). However, note that REM sleep does not occur during UHS (<xref ref-type="bibr" rid="B59">Rattenborg et al., 2000</xref>), and REM is largely, if not entirely, absent in aquatic mammals (<xref ref-type="bibr" rid="B37">Madan and Jha 2012</xref>; <xref ref-type="bibr" rid="B36">Lyamin et al., 2018</xref>).</p>
<p>In the present model, the VLPO and AMIN regions have been modeled with identical Hindmarsh-Rose neurons. The difference between the two regions was implemented only <italic>via</italic> the differential input from the circadian drive. In a more realistic model, parameters could be used which would better reflect the firing patterns typical of these regions, as these become better understood from <italic>in vitro</italic> studies and single unit recordings; more realistic neural models, of course, could be used as well, though this would come with the inevitable tradeoffs of increased computational time and additional parameters. Size effects could also play a role as the number of neurons in each region is increased, though preliminary results suggest that size effects have minimal effect on AMIN and VLPO synchronization in a one-hemisphere model using Huber-Braun neurons (<xref ref-type="bibr" rid="B22">Glaze, 2019</xref>).</p>
<p>Another important direction for investigation is the use of connectivity between regions based on empirical data (<xref ref-type="bibr" rid="B87">Wang and Liu, 2020</xref>). A recent study by <xref ref-type="bibr" rid="B58">Ramlow et al. (2019)</xref> found partial synchronization in a network of FitzHugh-Nagumo oscillators with connections based on empirical data from healthy human subjects. They observed asymmetries in the synchronization dynamics analogous to unihemispheric sleep, but found that these were due to the structural asymmetry in the model rather than to a true chimera effect. <xref ref-type="bibr" rid="B70">Santos et al. (2017)</xref> took a similar approach in developing a network model of the cat cerebral cortex, using the Hindmarsh-Rose equations, based on an empirical connectivity matrix. Such studies drive home the importance of combining both fundamental dynamical studies and empirical data by introducing different time delays or asymmetric coupling matrices within and across hemispheres.</p>
<p>Given that real brains exhibit structural asymmetry, does the chimera-state approach provide a reasonable model for unihemispheric sleep? Structural asymmetry has been shown to be important in driving the dynamics of the default mode network, whch is active during a state of quiet (awake) resting (<xref ref-type="bibr" rid="B67">Saenger et al., 2012</xref>). Recent advances in understanding how the brain&#x2019;s structure shapes its dynamics (<xref ref-type="bibr" rid="B18">Deco et al., 2011</xref>; <xref ref-type="bibr" rid="B77">Shen et al., 2015</xref>), as well as advances in the understanding of the neural connectome (<xref ref-type="bibr" rid="B79">Sporns et al., 2005</xref>; <xref ref-type="bibr" rid="B28">Kaiser, 2017</xref>; <xref ref-type="bibr" rid="B7">Betzel and Bassett, 2018</xref>) can provide the basis for models incorporating realistic structural asymmetries. This structural information could be combined with the modeling of individual neural oscillators, in order to investigate local synchronization changes, not only in bespoke code, but also in simulation platforms such as NEST (<xref ref-type="bibr" rid="B31">Kunkel and Schenck, 2017</xref>).</p>
<p>Incorporation of more realistic connectome data will be an important future step in determining the balance between dynamics and structural connectivity in driving sleep dynamics and other possible chimera-like states in the brain. Of particular interest in this regard will be studies such as <xref ref-type="bibr" rid="B53">Petkoski et al. (2018)</xref> and <xref ref-type="bibr" rid="B52">Petkoski and Jirsa (2019)</xref> which highlight the role of time delays and phase lags in large-scale brain network synchronization, because time delays are an important component of chimera dynamics (<xref ref-type="bibr" rid="B86">Tinsley et al., 2012</xref>).</p>
<p>Despite its obvious importance, structural asymmetry alone is unlikely to be the primary driver of sleep dynamics in species which exhibit hemispheric switching during unihemispheric sleep. Such switching must be, at its core, dynamically driven, since structural architecture is surely not rewired multiple times each night. Expanded versions of the chimera-generating model described here, with an emphasis on local synchronization within neural clusters, will, in combination with experimental data, be essential for decoupling dynamically-driven sleep asymmetries from those determined by functional architecture.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s5">
<title>Data Availability Statement</title>
<p>The raw data supporting the conclusion of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s6">
<title>Author Contributions</title>
<p>TG and SB developed the model; TG performed the simulations; SB and TG wrote the manuscript.</p>
</sec>
<sec sec-type="COI-statement" id="s7">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s8">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Abeyratne</surname>
<given-names>U. R.</given-names>
</name>
<name>
<surname>Swarnkar</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Hukins</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Duce</surname>
<given-names>B.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>Interhemispheric Asynchrony Correlates with Severity of Respiratory Disturbance Index in Patients with Sleep Apnea</article-title>. <source>IEEE Trans. Biomed. Eng.</source> <volume>57</volume> (<issue>12</issue>), <fpage>2947</fpage>&#x2013;<lpage>2955</lpage>. <pub-id pub-id-type="doi">10.1109/tbme.2010.2060197</pub-id>
</citation>
</ref>
<ref id="B2">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Abrams</surname>
<given-names>D. M.</given-names>
</name>
<name>
<surname>Mirollo</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Strogatz</surname>
<given-names>S. H.</given-names>
</name>
<name>
<surname>Wiley</surname>
<given-names>D. A.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>Solvable Model for Chimera States of Coupled Oscillators</article-title>. <source>Phys. Rev. Lett.</source> <volume>101</volume>, <fpage>084103</fpage>. <pub-id pub-id-type="doi">10.1103/PhysRevLett.101.084103</pub-id>
</citation>
</ref>
<ref id="B3">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Abrams</surname>
<given-names>D. M.</given-names>
</name>
<name>
<surname>Strogatz</surname>
<given-names>S. H.</given-names>
</name>
</person-group> (<year>2004</year>). <article-title>Chimera States for Coupled Oscillators</article-title>. <source>Phys. Rev. Lett.</source> <volume>93</volume> (<issue>17</issue>), <fpage>174102</fpage>. <pub-id pub-id-type="doi">10.1103/physrevlett.93.174102</pub-id>
</citation>
</ref>
<ref id="B4">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Aton</surname>
<given-names>S. J.</given-names>
</name>
<name>
<surname>Herzog</surname>
<given-names>E. D.</given-names>
</name>
</person-group> (<year>2005</year>). <article-title>Come Together, Right&#x2026;Now: Synchronization of Rhythms in a Mammalian Circadian Clock</article-title>. <source>Neuron</source> <volume>48</volume> (<issue>4</issue>), <fpage>531</fpage>&#x2013;<lpage>534</lpage>. <pub-id pub-id-type="doi">10.1016/j.neuron.2005.11.001</pub-id>
</citation>
</ref>
<ref id="B5">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Behn</surname>
<given-names>C. G. D.</given-names>
</name>
<name>
<surname>Brown</surname>
<given-names>E. N.</given-names>
</name>
<name>
<surname>Scammell</surname>
<given-names>T. E.</given-names>
</name>
<name>
<surname>Kopell</surname>
<given-names>N. J.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>Mathematical Model of Network Dynamics Governing Mouse Sleep-Wake Behavior</article-title>. <source>J. Neurophysiol.</source> <volume>97</volume>, <fpage>3828</fpage>&#x2013;<lpage>3840</lpage>. <pub-id pub-id-type="doi">10.1152/jn.01184.2006</pub-id>
</citation>
</ref>
<ref id="B6">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Behrens</surname>
<given-names>T. E.</given-names>
</name>
<name>
<surname>Sporns</surname>
<given-names>O.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Human Connectomics</article-title>. <source>Curr. Opin. Neurobiol.</source> <volume>22</volume> (<issue>1</issue>), <fpage>144</fpage>&#x2013;<lpage>153</lpage>. <pub-id pub-id-type="doi">10.1016/j.conb.2011.08.005</pub-id>
</citation>
</ref>
<ref id="B7">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Betzel</surname>
<given-names>R. F.</given-names>
</name>
<name>
<surname>Bassett</surname>
<given-names>D. S.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Specificity and Robustness of Long-Distance Connections in Weighted, Interareal Connectomes</article-title>. <source>Proc. Natl. Acad. Sci. U.S.A.</source> <volume>115</volume> (<issue>21</issue>), <fpage>E4880</fpage>&#x2013;<lpage>E4889</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.1720186115</pub-id>
</citation>
</ref>
<ref id="B8">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Booth</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Diniz Behn</surname>
<given-names>C. G.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Physiologically-based Modeling of Sleep-Wake Regulatory Networks</article-title>. <source>Math. Biosciences</source> <volume>250</volume>, <fpage>54</fpage>&#x2013;<lpage>68</lpage>. <pub-id pub-id-type="doi">10.1016/j.mbs.2014.01.012</pub-id>
</citation>
</ref>
<ref id="B9">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Borb&#xe9;ly</surname>
<given-names>A. A.</given-names>
</name>
</person-group> (<year>1982</year>). <article-title>A Two Process Model of Sleep Regulation</article-title>. <source>Hum. Neurobiol.</source> <volume>1</volume> (<issue>3</issue>), <fpage>195</fpage>&#x2013;<lpage>204</lpage>.</citation>
</ref>
<ref id="B10">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Borb&#xe9;ly</surname>
<given-names>A. A.</given-names>
</name>
<name>
<surname>Daan</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Wirz-Justice</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Deboer</surname>
<given-names>T.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>The Two-Process Model of Sleep Regulation: a Reappraisal</article-title>. <source>J. Sleep Res.</source> <volume>25</volume> (<issue>2</issue>), <fpage>131</fpage>&#x2013;<lpage>143</lpage>. <pub-id pub-id-type="doi">10.1111/jsr.12371</pub-id>
</citation>
</ref>
<ref id="B11">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Braun</surname>
<given-names>A. R.</given-names>
</name>
<name>
<surname>Balkin</surname>
<given-names>T. J.</given-names>
</name>
<name>
<surname>Wesenten</surname>
<given-names>N. J.</given-names>
</name>
<name>
<surname>Carson</surname>
<given-names>R. E.</given-names>
</name>
<name>
<surname>Varga</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Baldwin</surname>
<given-names>P.</given-names>
</name>
<etal/>
</person-group> (<year>1997</year>). <article-title>Regional Cerebral Blood Flow throughout the Sleep-Wake Cycle. An H<sub>2</sub>
<sup>(15)</sup>O PET Study</article-title>. <source>Brain</source> <volume>120</volume> (<issue>Pt 7</issue>), <fpage>1173</fpage>&#x2013;<lpage>1197</lpage>. <pub-id pub-id-type="doi">10.1093/brain/120.7.1173</pub-id>
</citation>
</ref>
<ref id="B12">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Braun</surname>
<given-names>H. A.</given-names>
</name>
<name>
<surname>Huber</surname>
<given-names>M. T.</given-names>
</name>
<name>
<surname>Dewald</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Schafer</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Voigt</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>1998</year>). <article-title>Computer Simulations of Neuronal Signal Transduction: the Role of Nonlinear Dynamics and Noise</article-title>. <source>Intl. J. Bif. Chaos</source> <volume>8</volume> (<issue>5</issue>), <fpage>881</fpage>&#x2013;<lpage>889</lpage>. <pub-id pub-id-type="doi">10.1142/s0218127498000681</pub-id>
</citation>
</ref>
<ref id="B13">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bukh</surname>
<given-names>A. V.</given-names>
</name>
<name>
<surname>Slepnev</surname>
<given-names>A. V.</given-names>
</name>
<name>
<surname>Anishschenko</surname>
<given-names>V. S.</given-names>
</name>
<name>
<surname>Vadivasova</surname>
<given-names>T. E.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Stability and Noise-Induced Transitions in an Ensemble of Nonlocally Coupled Chaotic Maps</article-title>. <source>Reg. Chaotic Dyn.</source> <volume>23</volume> (<issue>3</issue>), <fpage>326</fpage>&#x2013;<lpage>339</lpage>. <pub-id pub-id-type="doi">10.1134/s1560354718030073</pub-id>
</citation>
</ref>
<ref id="B14">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Corsi-Cabrera</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Ondarza</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Mart&#xed;nez-Guti&#xe9;rrez</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>R&#xed;o-Portilla</surname>
<given-names>Y. d.</given-names>
</name>
<name>
<surname>Guevara</surname>
<given-names>M. A.</given-names>
</name>
<name>
<surname>Ramos-Loyo</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2006</year>). <article-title>Role of Corpus Callosum in Interhemispheric Coherent Activity during Sleep</article-title>. <source>Clin. Neurophysiol.</source> <volume>117</volume> (<issue>8</issue>), <fpage>1826</fpage>&#x2013;<lpage>1835</lpage>. <pub-id pub-id-type="doi">10.1016/j.clinph.2006.05.008</pub-id>
</citation>
</ref>
<ref id="B15">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Creux</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Harmer</surname>
<given-names>S.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Circadian Rhythms in Plants</article-title>. <source>Cold Spring Harb. Perspect. Biol.</source> <volume>11</volume>, <fpage>a034611</fpage>. <pub-id pub-id-type="doi">10.1101/cshperspect.a034611</pub-id>
</citation>
</ref>
<ref id="B16">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Daan</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Beersma</surname>
<given-names>D. G.</given-names>
</name>
<name>
<surname>Borb&#xe9;ly</surname>
<given-names>A. A.</given-names>
</name>
</person-group> (<year>1984</year>). <article-title>Timing of Human Sleep: Recovery Process Gated by a Circadian Pacemaker</article-title>. <source>Am. J. Physiol.</source> <volume>246</volume> (<issue>2 Pt 2</issue>), <fpage>R161</fpage>&#x2013;<lpage>R183</lpage>. <pub-id pub-id-type="doi">10.1152/ajpregu.1984.246.2.R161</pub-id>
</citation>
</ref>
<ref id="B17">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>de Andr&#xe9;s</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Garz&#xf3;n</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Reinoso-Su&#xe1;rez</surname>
<given-names>F.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Functional Anatomy of Non-REM Sleep</article-title>. <source>Front. Neur.</source> <volume>2</volume>, <fpage>70</fpage>. <pub-id pub-id-type="doi">10.3389/fneur.2011.00070</pub-id>
</citation>
</ref>
<ref id="B18">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Deco</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Jirsa</surname>
<given-names>V. K.</given-names>
</name>
<name>
<surname>McIntosh</surname>
<given-names>A. R.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Emerging Concepts for the Dynamical Organization of Resting-State Activity in the Brain</article-title>. <source>Nat. Rev. Neurosci.</source> <volume>12</volume> (<issue>1</issue>), <fpage>43</fpage>&#x2013;<lpage>56</lpage>. <pub-id pub-id-type="doi">10.1038/nrn2961</pub-id>
</citation>
</ref>
<ref id="B19">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fischer</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Vetter</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Roenneberg</surname>
<given-names>T.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>A Novel Method to Visualise and Quantify Circadian Misalignment</article-title>. <source>Sci. Rep.</source> <volume>6</volume>, <fpage>38601</fpage>. <pub-id pub-id-type="doi">10.1038/srep38601</pub-id>
</citation>
</ref>
<ref id="B20">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fox</surname>
<given-names>R. F.</given-names>
</name>
<name>
<surname>Gatland</surname>
<given-names>I. R.</given-names>
</name>
<name>
<surname>Roy</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Vemuri</surname>
<given-names>G.</given-names>
</name>
</person-group> (<year>1988</year>). <article-title>Fast, Accurate Algorithm for Numerical Simulation of Exponentially Correlated Colored Noise</article-title>. <source>Phys. Rev. A</source> <volume>38</volume> (<issue>11</issue>), <fpage>5938</fpage>&#x2013;<lpage>5940</lpage>. <pub-id pub-id-type="doi">10.1103/physreva.38.5938</pub-id>
</citation>
</ref>
<ref id="B21">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gallopin</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Fort</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Eggermann</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Cauli</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Luppi</surname>
<given-names>P.-H.</given-names>
</name>
<name>
<surname>Rossier</surname>
<given-names>J.</given-names>
</name>
<etal/>
</person-group> (<year>2000</year>). <article-title>Identification of Sleep-Promoting Neurons <italic>In Vitro</italic>
</article-title>. <source>Nature</source> <volume>404</volume> (<issue>6781</issue>), <fpage>992</fpage>&#x2013;<lpage>995</lpage>. <pub-id pub-id-type="doi">10.1038/35010109</pub-id>
</citation>
</ref>
<ref id="B22">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Glaze</surname>
<given-names>T. A.</given-names>
</name>
</person-group> (<year>2019</year>). <source>A Computational Study of Sleep and the Hemispheres of the Brain</source>. <publisher-loc>St. Louis</publisher-loc>: <publisher-name>Doctoral Dissertation, University of Missouri at St. Louis</publisher-name>.</citation>
</ref>
<ref id="B23">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Glaze</surname>
<given-names>T. A.</given-names>
</name>
<name>
<surname>Lewis</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Bahar</surname>
<given-names>S.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Chimera States in a Hodgkin-Huxley Model of Thermally Sensitive Neurons</article-title>. <source>Chaos</source> <volume>26</volume> (<issue>8</issue>), <fpage>083119</fpage>. <pub-id pub-id-type="doi">10.1063/1.4961122</pub-id>
</citation>
</ref>
<ref id="B92">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gonz&#x00e1;lez-Miranda</surname>
<given-names>J. M.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>Complex Bifurcation Structures in the Hindmarsh-Rose Neural Model</article-title>. <source>Intl. J. Bif. Chaos</source> <volume>17</volume> (<issue>9</issue>), <fpage>3071</fpage>&#x2013;<lpage>3083</lpage>. <pub-id pub-id-type="doi">10.1142/S0218127407018877</pub-id>
</citation>
</ref>
<ref id="B24">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gvilia</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Xu</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>McGinty</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Szymusiak</surname>
<given-names>R.</given-names>
</name>
</person-group> (<year>2006</year>). <article-title>Homeostatic Regulation of Sleep: a Role for Preoptic Area Neurons</article-title>. <source>J. Neurosci.</source> <volume>26</volume> (<issue>37</issue>), <fpage>9426</fpage>&#x2013;<lpage>9433</lpage>. <pub-id pub-id-type="doi">10.1523/jneurosci.2012-06.2006</pub-id>
</citation>
</ref>
<ref id="B25">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hagerstrom</surname>
<given-names>A. M.</given-names>
</name>
<name>
<surname>Murphy</surname>
<given-names>T. E.</given-names>
</name>
<name>
<surname>Roy</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>H&#xf6;vel</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Omelchenko</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Sch&#xf6;ll</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Experimental Observation of Chimeras in Coupled-Map Lattices</article-title>. <source>Nat. Phys.</source> <volume>8</volume>, <fpage>658</fpage>&#x2013;<lpage>661</lpage>. <pub-id pub-id-type="doi">10.1038/nphys2372</pub-id>
</citation>
</ref>
<ref id="B26">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hindmarsh</surname>
<given-names>J. L.</given-names>
</name>
<name>
<surname>Rose</surname>
<given-names>R. M.</given-names>
</name>
</person-group> (<year>1984</year>). <article-title>A Model of Neuronal Bursting Using Three Coupled First Order Differential Equations</article-title>. <source>Proc. R. Soc. Lond. B</source> <volume>221</volume> (<issue>1222</issue>), <fpage>87</fpage>&#x2013;<lpage>102</lpage>. <pub-id pub-id-type="doi">10.1098/rspb.1984.0024</pub-id>
</citation>
</ref>
<ref id="B27">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hizanidis</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Kanas</surname>
<given-names>V. G.</given-names>
</name>
<name>
<surname>Bezerianos</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Bountis</surname>
<given-names>T.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Chimera States in Networks of Nonlocally Coupled Hindmarsh-Rose Neuron Models</article-title>. <source>Int. J. Bif. Chaos</source> <volume>24</volume>, <fpage>1450030</fpage>. <pub-id pub-id-type="doi">10.1142/s0218127414500308</pub-id>
</citation>
</ref>
<ref id="B28">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kaiser</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Mechanisms of Connectome Development</article-title>. <source>Trends Cogn. Sci.</source> <volume>21</volume> (<issue>9</issue>), <fpage>703</fpage>&#x2013;<lpage>717</lpage>. <pub-id pub-id-type="doi">10.1016/j.tics.2017.05.010</pub-id>
</citation>
</ref>
<ref id="B29">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kedziora</surname>
<given-names>D. J.</given-names>
</name>
<name>
<surname>Abeysuriya</surname>
<given-names>R. G.</given-names>
</name>
<name>
<surname>Phillips</surname>
<given-names>A. J. K.</given-names>
</name>
<name>
<surname>Robinson</surname>
<given-names>P. A.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Physiologically Based Quantitative Modeling of Unihemispheric Sleep</article-title>. <source>J. Theor. Biol.</source> <volume>314</volume>, <fpage>109</fpage>&#x2013;<lpage>119</lpage>. <pub-id pub-id-type="doi">10.1016/j.jtbi.2012.08.031</pub-id>
</citation>
</ref>
<ref id="B30">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Krueger</surname>
<given-names>J. M.</given-names>
</name>
<name>
<surname>Rector</surname>
<given-names>D. M.</given-names>
</name>
<name>
<surname>Roy</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Van Dongen</surname>
<given-names>H. P. A.</given-names>
</name>
<name>
<surname>Belenky</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Panksepp</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>Sleep as a Fundamental Property of Neuronal Assemblies</article-title>. <source>Nat. Rev. Neurosci.</source> <volume>9</volume> (<issue>12</issue>), <fpage>910</fpage>&#x2013;<lpage>919</lpage>. <pub-id pub-id-type="doi">10.1038/nrn2521</pub-id>
</citation>
</ref>
<ref id="B31">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kunkel</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Schenck</surname>
<given-names>W.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>The NEST Dry-Run Mode: Efficient Dynamic Analysis of Neuronal Network Simulation Code</article-title>. <source>Front. Neuroinform.</source> <volume>11</volume>, <fpage>40</fpage>. <pub-id pub-id-type="doi">10.3389/fninf.2017.00040</pub-id>
</citation>
</ref>
<ref id="B32">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kunz</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Achermann</surname>
<given-names>P.</given-names>
</name>
</person-group> (<year>2003</year>). <article-title>Simulation of Circadian Rhythm Generation in the Suprachiasmatic Nucleus with Locally Coupled Self-Sustained Oscillators</article-title>. <source>J. Theor. Biol.</source> <volume>224</volume> (<issue>1</issue>), <fpage>63</fpage>&#x2013;<lpage>78</lpage>. <pub-id pub-id-type="doi">10.1016/s0022-5193(03)00141-3</pub-id>
</citation>
</ref>
<ref id="B33">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Laing</surname>
<given-names>C. R.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Disorder-induced Dynamics in a Pair of Coupled Heterogeneous Phase Oscillator Networks</article-title>. <source>Chaos</source> <volume>22</volume>, <fpage>043104</fpage>. <pub-id pub-id-type="doi">10.1063/1.4758814</pub-id>
</citation>
</ref>
<ref id="B34">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Loos</surname>
<given-names>S. A.</given-names>
</name>
<name>
<surname>Claussen</surname>
<given-names>J. C.</given-names>
</name>
<name>
<surname>Sch&#xf6;ll</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Zakharova</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Chimera Patterns under the Impact of Noise</article-title>. <source>Phys. Rev. E</source> <volume>93</volume>, <fpage>012209</fpage>. <pub-id pub-id-type="doi">10.1103/PhysRevE.93.012209</pub-id>
</citation>
</ref>
<ref id="B35">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lu</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Sherman</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Devor</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Saper</surname>
<given-names>C. B.</given-names>
</name>
</person-group> (<year>2006</year>). <article-title>A Putative Flip-Flop Switch for Control of REM Sleep</article-title>. <source>Nature</source> <volume>441</volume> (<issue>7093</issue>), <fpage>589</fpage>&#x2013;<lpage>594</lpage>. <pub-id pub-id-type="doi">10.1038/nature04767</pub-id>
</citation>
</ref>
<ref id="B36">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lyamin</surname>
<given-names>O. I.</given-names>
</name>
<name>
<surname>Kosenko</surname>
<given-names>P. O.</given-names>
</name>
<name>
<surname>Korneva</surname>
<given-names>S. M.</given-names>
</name>
<name>
<surname>Vyssotski</surname>
<given-names>A. L.</given-names>
</name>
<name>
<surname>Mukhametov</surname>
<given-names>L. M.</given-names>
</name>
<name>
<surname>Siegel</surname>
<given-names>J. M.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Fur Seals Suppress REM Sleep for Very Long Periods without Subsequent Rebound</article-title>. <source>Curr. Biol.</source> <volume>28</volume> (<issue>12</issue>), <fpage>2000</fpage>&#x2013;<lpage>2005</lpage>. <pub-id pub-id-type="doi">10.1016/j.cub.2018.05.022</pub-id>
</citation>
</ref>
<ref id="B37">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Madan</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Jha</surname>
<given-names>S. K.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Sleep Alterations in Mammals: Did Aquatic Conditions Inhibit Rapid Eye Movement Sleep?</article-title> <source>Neurosci. Bull.</source> <volume>28</volume> (<issue>6</issue>), <fpage>746</fpage>&#x2013;<lpage>758</lpage>. <pub-id pub-id-type="doi">10.1007/s12264-012-1285-8</pub-id>
</citation>
</ref>
<ref id="B38">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Majhi</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Bera</surname>
<given-names>B. K.</given-names>
</name>
<name>
<surname>Ghosh</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Perc</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Chimera States in Neuronal Networks: a Review</article-title>. <source>Phys. Life Rev.</source> <volume>28</volume>, <fpage>100</fpage>&#x2013;<lpage>121</lpage>. <pub-id pub-id-type="doi">10.1016/j.plrev.2018.09.003</pub-id>
</citation>
</ref>
<ref id="B39">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Martens</surname>
<given-names>E. A.</given-names>
</name>
<name>
<surname>Thutupalli</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Fourri&#xe8;re</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Hallatschek</surname>
<given-names>O.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Chimera States in Mechanical Oscillator Networks</article-title>. <source>Proc. Natl. Acad. Sci. U.S.A.</source> <volume>110</volume> (<issue>26</issue>), <fpage>10563</fpage>&#x2013;<lpage>10567</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.1302880110</pub-id>
</citation>
</ref>
<ref id="B40">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>McGinty</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Szymusiak</surname>
<given-names>R.</given-names>
</name>
</person-group> (<year>2000</year>). <article-title>The Sleep-Wake Switch: a Neuronal Alarm Clock</article-title>. <source>Nat. Med.</source> <volume>6</volume> (<issue>5</issue>), <fpage>510</fpage>&#x2013;<lpage>511</lpage>. <pub-id pub-id-type="doi">10.1038/74988</pub-id>
</citation>
</ref>
<ref id="B41">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Moore</surname>
<given-names>R. Y.</given-names>
</name>
<name>
<surname>Eichler</surname>
<given-names>V. B.</given-names>
</name>
</person-group> (<year>1972</year>). <article-title>Loss of a Circadian Adrenal Corticosterone Rhythm Following Suprachiasmatic Lesions in the Rat</article-title>. <source>Brain Res.</source> <volume>42</volume> (<issue>1</issue>), <fpage>201</fpage>&#x2013;<lpage>206</lpage>. <pub-id pub-id-type="doi">10.1016/0006-8993(72)90054-6</pub-id>
</citation>
</ref>
<ref id="B42">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Moore</surname>
<given-names>R. Y.</given-names>
</name>
<name>
<surname>Lenn</surname>
<given-names>N. J.</given-names>
</name>
</person-group> (<year>1972</year>). <article-title>A Retinohypothalamic Projection in the Rat</article-title>. <source>J. Comp. Neurol.</source> <volume>146</volume> (<issue>1</issue>), <fpage>1</fpage>&#x2013;<lpage>14</lpage>. <pub-id pub-id-type="doi">10.1002/cne.901460102</pub-id>
</citation>
</ref>
<ref id="B43">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Mukhametov</surname>
<given-names>L. M.</given-names>
</name>
<name>
<surname>Supin</surname>
<given-names>A. Y.</given-names>
</name>
<name>
<surname>Polyakova</surname>
<given-names>I. G.</given-names>
</name>
</person-group> (<year>1977</year>). <article-title>Interhemispheric Asymmetry of the Electroencephalographic Sleep Patterns in Dolphins</article-title>. <source>Brain Res.</source> <volume>134</volume>, <fpage>581</fpage>&#x2013;<lpage>584</lpage>. <pub-id pub-id-type="doi">10.1016/0006-8993(77)90835-6</pub-id>
</citation>
</ref>
<ref id="B44">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Nakao</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Karashima</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Katayama</surname>
<given-names>N.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>Mathematical Models of Regulatory Mechanisms of Sleep-Wake Rhythms</article-title>. <source>Cell. Mol. Life Sci.</source> <volume>64</volume>, <fpage>1236</fpage>&#x2013;<lpage>1243</lpage>. <pub-id pub-id-type="doi">10.1007/s00018-007-6534-z</pub-id>
</citation>
</ref>
<ref id="B45">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Nath</surname>
<given-names>R. D.</given-names>
</name>
<name>
<surname>Bedbrook</surname>
<given-names>C. N.</given-names>
</name>
<name>
<surname>Abrams</surname>
<given-names>M. J.</given-names>
</name>
<name>
<surname>Basinger</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Bois</surname>
<given-names>J. S.</given-names>
</name>
<name>
<surname>Prober</surname>
<given-names>D. A.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>The Jellyfish <italic>Cassiopea</italic> Exhibits a Sleep-like State</article-title>. <source>Curr. Biol.</source> <volume>27</volume> (<issue>19</issue>), <fpage>2984</fpage>&#x2013;<lpage>2990</lpage>. <pub-id pub-id-type="doi">10.1016/j.cub.2017.08.014</pub-id>
</citation>
</ref>
<ref id="B46">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Nauta</surname>
<given-names>W. J. H.</given-names>
</name>
</person-group> (<year>1946</year>). <article-title>Hypothalamic Regulation of Sleep in Rats. An Experimental Study</article-title>. <source>J. Neurophysiol.</source> <volume>9</volume>, <fpage>285</fpage>&#x2013;<lpage>316</lpage>. <pub-id pub-id-type="doi">10.1152/jn.1946.9.4.285</pub-id>
</citation>
</ref>
<ref id="B47">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Nkomo</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Tinsley</surname>
<given-names>M. R.</given-names>
</name>
<name>
<surname>Showalter</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Chimera States in Populations of Nonlocally Coupled Chemical Oscillators</article-title>. <source>Phys. Rev. Lett.</source> <volume>110</volume> (<issue>24</issue>), <fpage>244102</fpage>. <pub-id pub-id-type="doi">10.1103/physrevlett.110.244102</pub-id>
</citation>
</ref>
<ref id="B48">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Oakenfull</surname>
<given-names>R. J.</given-names>
</name>
<name>
<surname>Davis</surname>
<given-names>S. J.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Shining a Light on the Arabidopsis Circadian Clock</article-title>. <source>Plant Cel Environ.</source> <volume>40</volume>, <fpage>2571</fpage>&#x2013;<lpage>2585</lpage>. <pub-id pub-id-type="doi">10.1111/pce.13033</pub-id>
</citation>
</ref>
<ref id="B49">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Omelchenko</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Omel&#x2019;chenko</surname>
<given-names>O. E.</given-names>
</name>
<name>
<surname>H&#xf6;vel</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Sch&#xf6;ll</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>When Nonlocal Coupling between Oscillators Becomes Stronger: Patched Synchrony or Multichimera States</article-title>. <source>Phys. Rev. Lett.</source> <volume>110</volume> (<issue>22</issue>), <fpage>224101</fpage>. <pub-id pub-id-type="doi">10.1103/physrevlett.110.224101</pub-id>
</citation>
</ref>
<ref id="B50">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Panaggio</surname>
<given-names>M. J.</given-names>
</name>
<name>
<surname>Abrams</surname>
<given-names>D. M.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Chimera States: Coexistence of Coherence and Incoherence in Networks of Coupled Oscillators</article-title>. <source>Nonlinearity</source> <volume>28</volume>, <fpage>R67</fpage>&#x2013;<lpage>R87</lpage>. <pub-id pub-id-type="doi">10.1088/0951-7715/28/3/r67</pub-id>
</citation>
</ref>
<ref id="B51">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Petkoski</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Iatsekno</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Basnarkov</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Stefanovska</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Mean-field and Mean-Ensemble Frequencies of a System of Coupled Oscillators</article-title>. <source>Phys. Rev. E</source> <volume>87</volume>, <fpage>032908</fpage>. <pub-id pub-id-type="doi">10.1103/physreve.87.032908</pub-id>
</citation>
</ref>
<ref id="B52">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Petkoski</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Jirsa</surname>
<given-names>V. K.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Transmission Time Delays Organize the Brain Network Synchronization</article-title>. <source>Phil. Trans. R. Soc. A</source> <volume>377</volume> (<issue>2153</issue>), <fpage>20180132</fpage>. <pub-id pub-id-type="doi">10.1098/rsta.2018.0132</pub-id>
</citation>
</ref>
<ref id="B53">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Petkoski</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Palva</surname>
<given-names>J. M.</given-names>
</name>
<name>
<surname>Jirsa</surname>
<given-names>V. K.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Phase-lags in Large Scale Brain Synchronization: Methodological Considerations and In-Silico Analysis</article-title>. <source>Plos Comput. Biol.</source> <volume>14</volume> (<issue>7</issue>), <fpage>e1006160</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pcbi.1006160</pub-id>
</citation>
</ref>
<ref id="B54">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Phillips</surname>
<given-names>A. J. K.</given-names>
</name>
<name>
<surname>Robinson</surname>
<given-names>P. A.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>A Quantitative Model of Sleep-Wake Dynamics Based on the Physiology of the Brainstem Ascending Arousal System</article-title>. <source>J. Biol. Rhythms</source> <volume>22</volume> (<issue>2</issue>), <fpage>167</fpage>&#x2013;<lpage>179</lpage>. <pub-id pub-id-type="doi">10.1177/0748730406297512</pub-id>
</citation>
</ref>
<ref id="B55">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Pikovsky</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Rosenblum</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Kurths</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2001</year>). <source>Synchronization: A Universal Concept in Nonlinear Sciences</source>. <publisher-name>Cambridge University Press</publisher-name>.</citation>
</ref>
<ref id="B56">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Postnova</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Voigt</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Braun</surname>
<given-names>H. A.</given-names>
</name>
</person-group> (<year>2009</year>). <article-title>A Mathematical Model of Homeostatic Regulation of Sleep-Wake Cycles by Hypocretin/orexin</article-title>. <source>J. Biol. Rhythms</source> <volume>24</volume> (<issue>6</issue>), <fpage>523</fpage>&#x2013;<lpage>535</lpage>. <pub-id pub-id-type="doi">10.1177/0748730409346655</pub-id>
</citation>
</ref>
<ref id="B57">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Puckeridge</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Fulcher</surname>
<given-names>B. D.</given-names>
</name>
<name>
<surname>Phillips</surname>
<given-names>A. J. K.</given-names>
</name>
<name>
<surname>Robinson</surname>
<given-names>P. A.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Incorporation of Caffeine into a Quantitative Model of Fatigue and Sleep</article-title>. <source>J. Theor. Biol.</source> <volume>273</volume> (<issue>1</issue>), <fpage>44</fpage>&#x2013;<lpage>54</lpage>. <pub-id pub-id-type="doi">10.1016/j.jtbi.2010.12.018</pub-id>
</citation>
</ref>
<ref id="B58">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ramlow</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Sawicki</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Zakharova</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Hlinka</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Claussen</surname>
<given-names>J. C.</given-names>
</name>
<name>
<surname>Sch&#xf6;ll</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Partial Synchronization in Empirical Brain Networks as a Model for Unihemispheric Sleep</article-title>. <source>Europhys. Lett.</source> <volume>126</volume>, <fpage>50007</fpage>. <pub-id pub-id-type="doi">10.1209/0295-5075/126/50007</pub-id>
</citation>
</ref>
<ref id="B59">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rattenborg</surname>
<given-names>N. C.</given-names>
</name>
<name>
<surname>Amlaner</surname>
<given-names>C. J.</given-names>
</name>
<name>
<surname>Lima</surname>
<given-names>S. L.</given-names>
</name>
</person-group> (<year>2000</year>). <article-title>Behavioral, Neurophysiological and Evolutionary Perspectives on Unihemispheric Sleep</article-title>. <source>Neurosci. Biobehavioral Rev.</source> <volume>24</volume> (<issue>8</issue>), <fpage>817</fpage>&#x2013;<lpage>842</lpage>. <pub-id pub-id-type="doi">10.1016/s0149-7634(00)00039-7</pub-id>
</citation>
</ref>
<ref id="B60">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rattenborg</surname>
<given-names>N. C.</given-names>
</name>
<name>
<surname>Lima</surname>
<given-names>S. L.</given-names>
</name>
<name>
<surname>Amlaner</surname>
<given-names>C. J.</given-names>
</name>
</person-group> (<year>1999</year>). <article-title>Half-awake to the Risk of Predation</article-title>. <source>Nature</source> <volume>397</volume> (<issue>6718</issue>), <fpage>397</fpage>&#x2013;<lpage>398</lpage>. <pub-id pub-id-type="doi">10.1038/17037</pub-id>
</citation>
</ref>
<ref id="B61">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rattenborg</surname>
<given-names>N. C.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Sleeping on the wing</article-title>. <source>Interf. Focus.</source> <volume>7</volume> (<issue>1</issue>), <fpage>20160082</fpage>. <pub-id pub-id-type="doi">10.1098/rsfs.2016.0082</pub-id>
</citation>
</ref>
<ref id="B62">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rempe</surname>
<given-names>M. J.</given-names>
</name>
<name>
<surname>Best</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Terman</surname>
<given-names>D.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>A Mathematical Model of the Sleep/wake Cycle</article-title>. <source>J. Math. Biol.</source> <volume>60</volume>, <fpage>615</fpage>&#x2013;<lpage>644</lpage>. <pub-id pub-id-type="doi">10.1007/s00285-009-0276-5</pub-id>
</citation>
</ref>
<ref id="B63">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rial</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Gonz&#xe1;lez</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Gen&#xe9;</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Aka&#xe2;rir</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Esteban</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Gamund&#xed;</surname>
<given-names>A.</given-names>
</name>
<etal/>
</person-group> (<year>2013</year>). <article-title>Asymmetric Sleep in Apneic Human Patients</article-title>. <source>Am. J. Physiology-Regulatory, Integr. Comp. Physiol.</source> <volume>304</volume> (<issue>3</issue>), <fpage>R232</fpage>&#x2013;<lpage>R237</lpage>. <pub-id pub-id-type="doi">10.1152/ajpregu.00302.2011</pub-id>
</citation>
</ref>
<ref id="B64">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rijo-Ferreira</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Takahashi</surname>
<given-names>J. S.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Genomics of Circadian Rhythms in Health and Disease</article-title>. <source>Genome Med.</source> <volume>11</volume>, <fpage>82</fpage>. <pub-id pub-id-type="doi">10.1186/s13073-019-0704-0</pub-id>
</citation>
</ref>
<ref id="B65">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sack</surname>
<given-names>R. L.</given-names>
</name>
<name>
<surname>Auckley</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Auger</surname>
<given-names>R. R.</given-names>
</name>
<name>
<surname>Carskadon</surname>
<given-names>M. A.</given-names>
</name>
<name>
<surname>Wright</surname>
<given-names>K. P.</given-names>
<suffix>Jr</suffix>
</name>
<name>
<surname>Vitiello</surname>
<given-names>M. V.</given-names>
</name>
<etal/>
</person-group> (<year>2007a</year>). <article-title>Circadian Rhythm Sleep Disorders: Part I, Basic Principles, Shift Work and Jet Lag Disorders</article-title>. <source>Sleep</source> <volume>30</volume> (<issue>11</issue>), <fpage>1460</fpage>&#x2013;<lpage>1483</lpage>. <pub-id pub-id-type="doi">10.1093/sleep/30.11.1460</pub-id>
</citation>
</ref>
<ref id="B66">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sack</surname>
<given-names>R. L.</given-names>
</name>
<name>
<surname>Auckley</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Auger</surname>
<given-names>R. R.</given-names>
</name>
<name>
<surname>Carskadon</surname>
<given-names>M. A.</given-names>
</name>
<name>
<surname>Wright</surname>
<given-names>K. P.</given-names>
<suffix>Jr</suffix>
</name>
<name>
<surname>Vitiello</surname>
<given-names>M. V.</given-names>
</name>
<etal/>
</person-group> (<year>2007b</year>). <article-title>Circadian Rhythm Sleep Disorders: Part II, Advanced Sleep Phase Disorder, Delayed Sleep Phase Disorder, Free-Running Disorder, and Irregular Sleep-Wake Rhythm</article-title>. <source>Sleep</source> <volume>30</volume> (<issue>11</issue>), <fpage>1484</fpage>&#x2013;<lpage>1501</lpage>. <pub-id pub-id-type="doi">10.1093/sleep/30.11.1484</pub-id>
</citation>
</ref>
<ref id="B67">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Saenger</surname>
<given-names>V. M.</given-names>
</name>
<name>
<surname>Barrios</surname>
<given-names>F. A.</given-names>
</name>
<name>
<surname>Mart&#xed;nez-Gudi&#xf1;o</surname>
<given-names>M. L.</given-names>
</name>
<name>
<surname>Alcauter</surname>
<given-names>S.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Hemispheric Asymmetries of Functional Connectivity and Grey Matter Volume in the Default Mode Network</article-title>. <source>Neuropsychologia</source> <volume>50</volume> (<issue>7</issue>), <fpage>1308</fpage>&#x2013;<lpage>1315</lpage>. <pub-id pub-id-type="doi">10.1016/j.neuropsychologia.2012.02.014</pub-id>
</citation>
</ref>
<ref id="B68">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sakai</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Single Unit Activity of the Suprachiasmatic Nucleus and Surrounding Neurons during the Wake-Sleep Cycle in Mice</article-title>. <source>Neuroscience</source> <volume>260</volume>, <fpage>249</fpage>&#x2013;<lpage>264</lpage>. <pub-id pub-id-type="doi">10.1016/j.neuroscience.2013.12.020</pub-id>
</citation>
</ref>
<ref id="B69">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sakurai</surname>
<given-names>T.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>The Neural Circuit of Orexin (Hypocretin): Maintaining Sleep and Wakefulness</article-title>. <source>Nat. Rev. Neurosci.</source> <volume>8</volume> (<issue>3</issue>), <fpage>171</fpage>&#x2013;<lpage>181</lpage>. <pub-id pub-id-type="doi">10.1038/nrn2092</pub-id>
</citation>
</ref>
<ref id="B70">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Santos</surname>
<given-names>M. S.</given-names>
</name>
<name>
<surname>Szezech</surname>
<given-names>J. D.</given-names>
</name>
<name>
<surname>Borges</surname>
<given-names>F. S.</given-names>
</name>
<name>
<surname>Iarosz</surname>
<given-names>K. C.</given-names>
</name>
<name>
<surname>Caldas</surname>
<given-names>I. L.</given-names>
</name>
<name>
<surname>Batista</surname>
<given-names>A. M.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>Chimera-like States in a Neuronal Network Model of the Cat Brain</article-title>. <source>Chaos, Solitons &#x26; Fractals</source> <volume>101</volume>, <fpage>86</fpage>&#x2013;<lpage>91</lpage>. <pub-id pub-id-type="doi">10.1016/j.chaos.2017.05.028</pub-id>
</citation>
</ref>
<ref id="B71">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Saper</surname>
<given-names>C. B.</given-names>
</name>
<name>
<surname>Chou</surname>
<given-names>T. C.</given-names>
</name>
<name>
<surname>Scammell</surname>
<given-names>T. E.</given-names>
</name>
</person-group> (<year>2001</year>). <article-title>The Sleep Switch: Hypothalamic Control of Sleep and Wakefulness</article-title>. <source>Trends Neurosciences</source> <volume>24</volume> (<issue>12</issue>), <fpage>726</fpage>&#x2013;<lpage>731</lpage>. <pub-id pub-id-type="doi">10.1016/s0166-2236(00)02002-6</pub-id>
</citation>
</ref>
<ref id="B72">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Saper</surname>
<given-names>C. B.</given-names>
</name>
<name>
<surname>Fuller</surname>
<given-names>P. M.</given-names>
</name>
<name>
<surname>Pedersen</surname>
<given-names>N. P.</given-names>
</name>
<name>
<surname>Lu</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Scammell</surname>
<given-names>T. E.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>Sleep State Switching</article-title>. <source>Neuron</source> <volume>68</volume> (<issue>6</issue>), <fpage>1023</fpage>&#x2013;<lpage>1042</lpage>. <pub-id pub-id-type="doi">10.1016/j.neuron.2010.11.032</pub-id>
</citation>
</ref>
<ref id="B73">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Saper</surname>
<given-names>C. B.</given-names>
</name>
<name>
<surname>Lowell</surname>
<given-names>B. B.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>The Hypothalamus</article-title>. <source>Curr. Biol.</source> <volume>24</volume> (<issue>23</issue>), <fpage>R1111</fpage>&#x2013;<lpage>R1116</lpage>. <pub-id pub-id-type="doi">10.1016/j.cub.2014.10.023</pub-id>
</citation>
</ref>
<ref id="B74">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Scammell</surname>
<given-names>T. E.</given-names>
</name>
<name>
<surname>Arrigoni</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Lipton</surname>
<given-names>J. O.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Neural Circuitry of Wakefulness and Sleep</article-title>. <source>Neuron</source> <volume>93</volume>, <fpage>747</fpage>&#x2013;<lpage>765</lpage>. <pub-id pub-id-type="doi">10.1016/j.neuron.2017.01.014</pub-id>
</citation>
</ref>
<ref id="B75">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Schwartz</surname>
<given-names>M. D.</given-names>
</name>
<name>
<surname>Kilduff</surname>
<given-names>T. S.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>The Neurobiology of Sleep and Wakefulness</article-title>. <source>Psychiatr. Clin. North America</source> <volume>38</volume> (<issue>4</issue>), <fpage>615</fpage>&#x2013;<lpage>644</lpage>. <pub-id pub-id-type="doi">10.1016/j.psc.2015.07.002</pub-id>
</citation>
</ref>
<ref id="B76">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Semenova</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Zakharova</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Anishchenko</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Sch&#xf6;ll</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Coherence Resonance Chimeras in a Network of Excitable Elements</article-title>. <source>Phys. Rev. Lett.</source> <volume>117</volume>, <fpage>014102</fpage>. <pub-id pub-id-type="doi">10.1103/physrevlett.117.014102</pub-id>
</citation>
</ref>
<ref id="B77">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Shen</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Hutchison</surname>
<given-names>R. M.</given-names>
</name>
<name>
<surname>Bezgin</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Everling</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>McIntosh</surname>
<given-names>A. R.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Network Structure Shapes Spontaneous Functional Connectivity Dynamics</article-title>. <source>J. Neurosci.</source> <volume>35</volume> (<issue>14</issue>), <fpage>5579</fpage>&#x2013;<lpage>5588</lpage>. <pub-id pub-id-type="doi">10.1523/jneurosci.4903-14.2015</pub-id>
</citation>
</ref>
<ref id="B78">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sherin</surname>
<given-names>J. E.</given-names>
</name>
<name>
<surname>Shiromani</surname>
<given-names>P. J.</given-names>
</name>
<name>
<surname>McCarley</surname>
<given-names>R. W.</given-names>
</name>
<name>
<surname>Saper</surname>
<given-names>C. B.</given-names>
</name>
</person-group> (<year>1996</year>). <article-title>Activation of Ventrolateral Preoptic Neurons during Sleep</article-title>. <source>Science</source> <volume>271</volume> (<issue>5246</issue>), <fpage>216</fpage>&#x2013;<lpage>219</lpage>. <pub-id pub-id-type="doi">10.1126/science.271.5246.216</pub-id>
</citation>
</ref>
<ref id="B79">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sporns</surname>
<given-names>O.</given-names>
</name>
<name>
<surname>Tononi</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>K&#xf6;tter</surname>
<given-names>R.</given-names>
</name>
</person-group> (<year>2005</year>). <article-title>The Human Connectome: a Structural Description of the Human Brain</article-title>. <source>Plos Comp. Biol.</source> <volume>1</volume> (<issue>4</issue>), <fpage>e42</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pcbi.0010042</pub-id>
</citation>
</ref>
<ref id="B80">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>St. Hilaire</surname>
<given-names>M. A.</given-names>
</name>
<name>
<surname>Khalsa</surname>
<given-names>S. B. S.</given-names>
</name>
<name>
<surname>Wright</surname>
<given-names>K. P.</given-names>
</name>
<name>
<surname>Czeisler</surname>
<given-names>C. A.</given-names>
<suffix>Jr</suffix>
</name>
<name>
<surname>Kronauer</surname>
<given-names>R. E.</given-names>
</name>
<etal/>
</person-group> (<year>2007</year>). <article-title>Addition of a Non-photic Component to a Light-Based Mathematical Model of the Human Circadian Pacemaker</article-title>. <source>J. Theor. Biol.</source> <volume>247</volume> (<issue>4</issue>), <fpage>583</fpage>&#x2013;<lpage>599</lpage>. <pub-id pub-id-type="doi">10.1016/j.jtbi.2007.04.001</pub-id>
</citation>
</ref>
<ref id="B81">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Strogatz</surname>
<given-names>S. H.</given-names>
</name>
</person-group> (<year>1987</year>). <article-title>Human Sleep and Circadian Rhythms: a Simple Model Based on Two Coupled Oscillators</article-title>. <source>J. Math. Biol.</source> <volume>25</volume>, <fpage>327</fpage>&#x2013;<lpage>347</lpage>. <pub-id pub-id-type="doi">10.1007/bf00276440</pub-id>
</citation>
</ref>
<ref id="B82">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Suntsova</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Guzman-Marin</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Kumar</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Alam</surname>
<given-names>M. N.</given-names>
</name>
<name>
<surname>Szymusiak</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>McGinty</surname>
<given-names>D.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>The Median Preoptic Nucleus Reciprocally Modulates Activity of Arousal-Related and Sleep-Related Neurons in the Perifornical Lateral Hypothalamus</article-title>. <source>J. Neurosci.</source> <volume>27</volume> (<issue>7</issue>), <fpage>1616</fpage>&#x2013;<lpage>1630</lpage>. <pub-id pub-id-type="doi">10.1523/jneurosci.3498-06.2007</pub-id>
</citation>
</ref>
<ref id="B83">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Takahashi</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Kayama</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Lin</surname>
<given-names>J. S.</given-names>
</name>
<name>
<surname>Sakai</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>Locus Coeruleus Neuronal Activity during the Sleep-Waking Cycle in Mice</article-title>. <source>Neuroscience</source> <volume>169</volume> (<issue>3</issue>), <fpage>1115</fpage>&#x2013;<lpage>1126</lpage>. <pub-id pub-id-type="doi">10.1016/j.neuroscience.2010.06.009</pub-id>
</citation>
</ref>
<ref id="B84">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tamaki</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Bang</surname>
<given-names>J. W.</given-names>
</name>
<name>
<surname>Watanabe</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Sasaki</surname>
<given-names>Y.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Night Watch in One Brain Hemisphere during Sleep Associated with the First-Night Effect in Humans</article-title>. <source>Curr. Biol.</source> <volume>26</volume> (<issue>9</issue>), <fpage>1190</fpage>&#x2013;<lpage>1194</lpage>. <pub-id pub-id-type="doi">10.1016/j.cub.2016.02.063</pub-id>
</citation>
</ref>
<ref id="B85">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tang</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Ma</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Luo</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Noise and Delay Sustained Chimera State in Small World Neuronal Network</article-title>. <source>Sci. China Technol. Sci.</source> <volume>62</volume>, <fpage>1134</fpage>&#x2013;<lpage>1140</lpage>. <pub-id pub-id-type="doi">10.1007/s11431-017-9282-x</pub-id>
</citation>
</ref>
<ref id="B86">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tinsley</surname>
<given-names>M. R.</given-names>
</name>
<name>
<surname>Nkomo</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Showalter</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Chimera and Phase-Cluster States in Populations of Coupled Chemical Oscillators</article-title>. <source>Nat. Phys.</source> <volume>8</volume>, <fpage>662</fpage>&#x2013;<lpage>665</lpage>. <pub-id pub-id-type="doi">10.1038/nphys2371</pub-id>
</citation>
</ref>
<ref id="B87">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wang</surname>
<given-names>Z.</given-names>
</name>
<name>
<surname>Liu</surname>
<given-names>Z.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>A Brief Review of Chimera State in Empirical Brain Networks</article-title>. <source>Front. Physiol.</source> <volume>11</volume>, <fpage>724</fpage>. <pub-id pub-id-type="doi">10.3389/fphys.2020.00724</pub-id>
</citation>
</ref>
<ref id="B88">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wickramasinghe</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Kiss</surname>
<given-names>I. Z.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Spatially Organized Dynamical States in Chemical Oscillator Networks: Synchronization, Dynamical Differentiation, and Chimera Patterns</article-title>. <source>PLoS One</source> <volume>8</volume> (<issue>11</issue>), <fpage>e80586</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0080586</pub-id>
</citation>
</ref>
<ref id="B89">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wolfrum</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Omel&#x27;chenko</surname>
<given-names>O. E.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Chimera States are Chaotic Transients</article-title>. <source>Phys. Rev. E</source> <volume>84</volume>, <fpage>015201</fpage>. <pub-id pub-id-type="doi">10.1103/PhysRevE.84.015201</pub-id>
</citation>
</ref>
<ref id="B90">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Zakharova</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Loos</surname>
<given-names>S. A. M.</given-names>
</name>
<name>
<surname>Siebert</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Gjurchinovski</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Claussen</surname>
<given-names>J. C.</given-names>
</name>
<name>
<surname>Sch&#xf6;ll</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2016</year>). &#x201c;<article-title>Controlling Chimera Patterns in Networks: Interplay of Structure, Noise and Delay</article-title>,&#x201d; in <source>Control of Self-Organizing Linear Systems</source>. Editors <person-group person-group-type="editor">
<name>
<surname>Sch&#xf6;ll</surname>
<given-names>E.</given-names>
</name>
</person-group> (<publisher-loc>Switzerland</publisher-loc>: <publisher-name>Springer International Publishing</publisher-name>). <pub-id pub-id-type="doi">10.1007/978-3-319-28028-8_1</pub-id>
</citation>
</ref>
<ref id="B91">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zakharova</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Semenova</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Anishchenko</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Sch&#xf6;ll</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Time-delayed Feedback Control of Coherence Resonance Chimeras</article-title>. <source>Chaos</source> <volume>27</volume>, <fpage>114320</fpage>. <pub-id pub-id-type="doi">10.1063/1.5008385</pub-id>
</citation>
</ref>
</ref-list>
</back>
</article>