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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Netw. Physiol.</journal-id>
<journal-title>Frontiers in Network Physiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Netw. Physiol.</abbrev-journal-title>
<issn pub-type="epub">2674-0109</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">730385</article-id>
<article-id pub-id-type="doi">10.3389/fnetp.2021.730385</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Network Physiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Modeling Tumor Disease and Sepsis by Networks of Adaptively Coupled Phase Oscillators</article-title>
<alt-title alt-title-type="left-running-head">Sawicki et&#x20;al.</alt-title>
<alt-title alt-title-type="right-running-head">Modeling Tumor Disease and Sepsis</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Sawicki</surname>
<given-names>Jakub</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/639351/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Berner</surname>
<given-names>Rico</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1294541/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>L&#xf6;ser</surname>
<given-names>Thomas</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Sch&#xf6;ll</surname>
<given-names>Eckehard</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/559434/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Potsdam Institute for Climate Impact Research</institution>, <addr-line>Potsdam</addr-line>, <country>Germany</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Institut f&#xfc;r Mathematik, Technische Universit&#xe4;t Berlin</institution>, <addr-line>Berlin</addr-line>, <country>Germany</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Institut f&#xfc;r Theoretische Physik, Technische Universit&#xe4;t Berlin</institution>, <addr-line>Berlin</addr-line>, <country>Germany</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Institut LOESER</institution>, <addr-line>Leipzig</addr-line>, <country>Germany</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Bernstein Center for Computational Neuroscience Berlin, Humboldt-Universit&#xe4;t</institution>, <addr-line>Berlin</addr-line>, <country>Germany</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/55171/overview">Alexander Neiman</ext-link>, Ohio University, United&#x20;States</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1050941/overview">Justus Alfred Kromer</ext-link>, Stanford University, United&#x20;States</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/78276/overview">Alexey Zaikin</ext-link>, University College London, United&#x20;Kingdom</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Eckehard Sch&#xf6;ll, <email>schoell@physik.tu-berlin.de</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Networks of Dynamical Systems, a section of the journal Frontiers in Network Physiology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>17</day>
<month>01</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>1</volume>
<elocation-id>730385</elocation-id>
<history>
<date date-type="received">
<day>24</day>
<month>06</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>19</day>
<month>11</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Sawicki, Berner, L&#xf6;ser and Sch&#xf6;ll.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Sawicki, Berner, L&#xf6;ser and Sch&#xf6;ll</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these&#x20;terms.</p>
</license>
</permissions>
<abstract>
<p>In this study, we provide a dynamical systems perspective to the modelling of pathological states induced by tumors or infection. A unified disease model is established using the innate immune system as the reference point. We propose a two-layer network model for carcinogenesis and sepsis based upon the interaction of parenchymal cells and immune cells <italic>via</italic> cytokines, and the co-evolutionary dynamics of parenchymal, immune cells, and cytokines. Our aim is to show that the complex cellular cooperation between parenchyma and stroma (immune layer) in the physiological and pathological case can be qualitatively and functionally described by a simple paradigmatic model of phase oscillators. By this, we explain carcinogenesis, tumor progression, and sepsis by destabilization of the healthy homeostatic state (frequency synchronized), and emergence of a pathological state (desynchronized or multifrequency cluster). The coupled dynamics of parenchymal cells (metabolism) and nonspecific immune cells (reaction of innate immune system) are represented by nodes of a duplex layer. The cytokine interaction is modeled by adaptive coupling weights between the nodes representing the immune cells (with fast adaptation time scale) and the parenchymal cells (slow adaptation time scale) and between the pairs of parenchymal and immune cells in the duplex network (fixed bidirectional coupling). Thereby, carcinogenesis, organ dysfunction in sepsis, and recurrence risk can be described in a correct functional context.</p>
</abstract>
<kwd-group>
<kwd>adaptive networks</kwd>
<kwd>cluster synchronization</kwd>
<kwd>coupled oscillators</kwd>
<kwd>pattern formation</kwd>
<kwd>sepsis</kwd>
<kwd>tumor disease</kwd>
<kwd>cytokine activity</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>Tumors and sepsis are diseases of different genesis. They have very different time scales and the therapies are completely different. But the age incidence, the risk factors, the outcome, and the temporal recurrence behavior are similar. This justifies the attempt to describe tumor disease and sepsis with a unified disease model. A shift of the paradigm is proposed by choosing the nonspecific innate immune system as the reference point for both diseases <xref ref-type="bibr" rid="B72">L&#xf6;ser (2020)</xref>. The innate immune system interacts with mutant cells and pathogens. Its role is to maintain the integrity of the organism by actively eliminating foreign organisms, degrading the organism&#x2019;s own damaged cells, and activating and coordinating wound healing. It can ward off about 99% of all infections <xref ref-type="bibr" rid="B26">Bomans et&#x20;al. (2018)</xref>; it arose with the beginning of multicellular life, and has grown and protected life to this day <xref ref-type="bibr" rid="B79">Male et&#x20;al. (2012)</xref>; <xref ref-type="bibr" rid="B95">Rich and Chaplin (2019)</xref>. It is ubiquitously present in the organism, is responsive without significant dead time, and is based on dynamically balanced activator-inhibitor mechanisms. Its regulation is essentially decentrally organized. The innate immune system includes humoral and cellular components, the endothelium, and the tissue stroma. With the multitude of components interacting in the innate immune system, it is organized in a complex way and has a broad response spectrum.</p>
<p>The innate immune system is not completely resistant to disturbances; it can be brought to dysregulation. Tumor disease and sepsis are two prominent examples of this behavior. Although tumor disease and sepsis correspond to different medical conditions, after the initial stages a relatively uniform course develops <xref ref-type="bibr" rid="B119">Weinberg (2014)</xref>, <xref ref-type="bibr" rid="B108">Singer et&#x20;al. (2016)</xref>. The variability of tumor disease results from the initial genetic state of the tumor cells, their subsequent mutations, epithelial-mesenchymal transition, and interactions with the innate immune system <xref ref-type="bibr" rid="B71">Longo (2011)</xref>. Recently, in case of cancer the crosstalk of tumor cells with immune cells has been investigated in more detail <xref ref-type="bibr" rid="B124">Zhang et&#x20;al. (2021)</xref>. In sepsis, the innate immune system is activated by infection and the clinical course is determined by the individual patient&#x2019;s initial condition. In both cases, the innate immune system can be brought to dysregulation and develop its own clinical picture such as cachexia, coagulation disorders, and organ failure. In the case of tumor disease, this is compounded by space-occupying lesions, tissue invasion and destruction through the nonphysiological production of proliferation factors, cytokines, and chemokines. Possibly, not only the cytokine concentration, the cytokine mix but also the gradient of their increase is responsible for the extent of dysregulation of the innate immune system and thus for the disease consequences <xref ref-type="bibr" rid="B85">Mor&#xe1;n et&#x20;al. (2013)</xref>, <xref ref-type="bibr" rid="B6">Altan-Bonnet and Mukherjee (2019)</xref>.</p>
<p>The unified disease model with the <italic>innate immune system</italic> as reference point is the basis for our modeling approach in terms of nonlinear dynamics of complex networks. Note that this is not a biochemical or genetic or cellular or tissue model of carcogenesis, as has been reviewed elsewhere <xref ref-type="bibr" rid="B115">Vineis et&#x20;al. (2010)</xref>, but it rather describes tumor and sepsis and recurrence risk in a dynamical functional context. Complex networks are an ubiquitous paradigm in nature and technology, with a wide field of applications ranging from physics, chemistry, biology, neuroscience, to engineering, and socio-economic systems. Of particular interest are adaptive networks, where the connectivity changes in time, for instance, in chemical or biochemical systems <xref ref-type="bibr" rid="B56">Jain and Krishna (2001)</xref>, where the reaction rates adapt dynamically depending on the variables of the system, or in neuronal synaptic plasticity <xref ref-type="bibr" rid="B81">Markram et&#x20;al. (1997)</xref>, <xref ref-type="bibr" rid="B1">Abbott and Nelson (2000)</xref>, <xref ref-type="bibr" rid="B83">Meisel and Gross (2009)</xref>, <xref ref-type="bibr" rid="B74">L&#xfc;cken et&#x20;al. (2016)</xref>, in epidemics <xref ref-type="bibr" rid="B49">Gross et&#x20;al. (2006)</xref>, and in biological or social systems <xref ref-type="bibr" rid="B48">Gross and Blasius (2008)</xref>. Another focus of recent research in network science are multilayer networks, which are systems interconnected through different types of links <xref ref-type="bibr" rid="B37">De Domenico et&#x20;al. (2013)</xref>, <xref ref-type="bibr" rid="B24">Boccaletti et&#x20;al. (2014)</xref>, <xref ref-type="bibr" rid="B61">Kivel&#xe4; et&#x20;al. (2014)</xref>, <xref ref-type="bibr" rid="B36">De Domenico et&#x20;al. (2015)</xref>. A special case of multilayer networks are multiplex topologies, where each layer contains the same set of nodes, and only pairwise connections between corresponding nodes from neighboring layers exist <xref ref-type="bibr" rid="B123">Zhang et&#x20;al. (2015)</xref>, <xref ref-type="bibr" rid="B78">Maksimenko et&#x20;al. (2016)</xref>, <xref ref-type="bibr" rid="B7">Andrzejak et&#x20;al. (2017)</xref>, <xref ref-type="bibr" rid="B65">Leyva et&#x20;al. (2017)</xref>, <xref ref-type="bibr" rid="B101">Sawicki et&#x20;al. (2018)</xref>, <xref ref-type="bibr" rid="B88">Nikitin et&#x20;al. (2019)</xref>, <xref ref-type="bibr" rid="B89">Omelchenko et&#x20;al. (2019)</xref>, <xref ref-type="bibr" rid="B97">Rybalova et&#x20;al. (2019)</xref>, <xref ref-type="bibr" rid="B38">Drauschke et&#x20;al. (2020)</xref>, <xref ref-type="bibr" rid="B16">Berner et&#x20;al. (2021a)</xref>, <xref ref-type="bibr" rid="B100">Sawicki et&#x20;al. (2021)</xref>, <xref ref-type="bibr" rid="B107">Shepelev et&#x20;al. (2021)</xref>.</p>
<p>Synchronization is an important feature of the dynamics in networks of coupled nonlinear oscillators <xref ref-type="bibr" rid="B91">Pikovsky et&#x20;al. (2001)</xref>, <xref ref-type="bibr" rid="B109">Strogatz (2001)</xref>, <xref ref-type="bibr" rid="B5">Albert and Barab&#xe1;si (2002)</xref>, <xref ref-type="bibr" rid="B87">Newman (2003)</xref>, <xref ref-type="bibr" rid="B25">Boccaletti et&#x20;al. (2018)</xref>, <xref ref-type="bibr" rid="B17">Berner (2021)</xref>. Various synchronization patterns are known such as cluster synchronization where the network splits into groups of synchronous elements <xref ref-type="bibr" rid="B35">Dahms et&#x20;al. (2012)</xref>, or partial synchronization patterns such as chimera states where the system splits into coexisting domains of coherent (synchronized) and incoherent (desynchronized) states <xref ref-type="bibr" rid="B63">Kuramoto and Battogtokh (2002)</xref>, <xref ref-type="bibr" rid="B3">Abrams and Strogatz (2004)</xref>, <xref ref-type="bibr" rid="B90">Panaggio and Abrams (2015)</xref>, <xref ref-type="bibr" rid="B99">Sawicki (2019)</xref>, <xref ref-type="bibr" rid="B102">Sch&#xf6;ll (2020)</xref>, <xref ref-type="bibr" rid="B103">Sch&#xf6;ll et&#x20;al. (2020)</xref>. These patterns were also explored in adaptive networks <xref ref-type="bibr" rid="B104">Seliger et&#x20;al. (2002)</xref>, <xref ref-type="bibr" rid="B8">Aoki and Aoyagi (2009)</xref>, <xref ref-type="bibr" rid="B113">Timms and English (2014)</xref>, <xref ref-type="bibr" rid="B60">Kasatkin et&#x20;al. (2017)</xref>, <xref ref-type="bibr" rid="B20">Berner et&#x20;al. (2019b)</xref>, <xref ref-type="bibr" rid="B21">Berner et&#x20;al. (2021b)</xref>, <xref ref-type="bibr" rid="B23">Berner et&#x20;al. (2021d)</xref>, and in particular in adaptive two-layer networks of phase oscillators <xref ref-type="bibr" rid="B59">Kasatkin and Nekorkin (2018)</xref>, <xref ref-type="bibr" rid="B19">Berner et&#x20;al. (2020b)</xref>. Moreover, the role of synchronization is an important aspect in the field of network physiology, where multi-component physiological systems continuously interact in an integrated network to coordinate their functions <xref ref-type="bibr" rid="B13">Bashan et&#x20;al. (2012)</xref>, <xref ref-type="bibr" rid="B55">Ivanov and Bartsch (2014)</xref>, <xref ref-type="bibr" rid="B11">Bartsch et&#x20;al. (2015)</xref>, <xref ref-type="bibr" rid="B84">Moorman et&#x20;al. (2016)</xref>, <xref ref-type="bibr" rid="B66">Lin et&#x20;al. (2016)</xref>. There are empirical studies dealing with the structural organization and functional complexity of human organism which demonstrate phase-synchronization as well as phase transitions <xref ref-type="bibr" rid="B31">Chen et&#x20;al. (2006)</xref>, <xref ref-type="bibr" rid="B121">Xu et&#x20;al. (2006)</xref>, <xref ref-type="bibr" rid="B54">Ivanov et&#x20;al. (2009)</xref>, <xref ref-type="bibr" rid="B12">Bartsch et&#x20;al. (2012)</xref> between different modes of synchronization in real physiological systems. In case of complex diseases, the progression from a healthy to sick state can be abrupt and may cause a critical transition <xref ref-type="bibr" rid="B30">Chen et&#x20;al. (2012)</xref>, <xref ref-type="bibr" rid="B69">Liu et&#x20;al. (2012)</xref>, <xref ref-type="bibr" rid="B68">Liu et&#x20;al. (2013a)</xref>, <xref ref-type="bibr" rid="B70">Liu et&#x20;al. (2013b)</xref>.</p>
<p>In this article, we propose a two-layer network model for carcinogenesis and sepsis based upon the interaction of parenchymal cells and immune cells via cytokines and the co-evolutionary dynamics of parenchymal, immune cells, and cytokines. Parenchyma is the bulk of <italic>functional</italic> substance in an organ, in contrast to the stroma, which refers to the <italic>structural</italic> tissue of organs or structures. In many organs the parenchyma consists of epithelial cells. We stress that our model is not a detailed model of organs or of biochemical processes but a functional model of dynamic interactions. Thus, cytokines are not modeled in terms of concentrations but rather in terms of the cytokine-mediated information flow between nodes within each layer and between the parenchymal and the immune layer, describing the cytokine activity. In the following, we refer to the stroma as the immune layer. The article is organized as follows: In <xref ref-type="sec" rid="s2">Section 2</xref>, we provide a brief overview of the physiology of tumor disease and sepsis. The functional network model is introduced in <xref ref-type="sec" rid="s3">Section &#x2009;3</xref>. Here, we discuss all variables, parameters, and their physiological meaning. Moreover, the methods and measures used for the subsequent numerical analysis are introduced and highlighted in their physiological context. In <xref ref-type="sec" rid="s4">Section 4</xref>, we discuss various dynamical scenarios of the model simulations of tumor disease that are observed in the presence of pathological cells. <xref ref-type="sec" rid="s5">Section 5</xref> presents analogous computer simulations for sepsis. The results are summarized in <xref ref-type="sec" rid="s6">Section &#x2009;6</xref>.</p>
</sec>
<sec id="s2">
<title>2 Physiological Description</title>
<sec id="s2-1">
<title>2.1 Initial Situation</title>
<p>The function of the innate immune system is ensured in a site-independent manner by the coordinated activity of humoral and cellular components. Coordination also occurs <italic>via</italic> cytokines. With new cytokine sources building up over individual lifetimes, the stability of regulatory behavior in the innate immune system changes. Contributing systemic factors include inflammaging <xref ref-type="bibr" rid="B42">Franceschi and Campisi (2014)</xref>, <xref ref-type="bibr" rid="B28">Calder et&#x20;al. (2017)</xref>, activation of the coagulation system <xref ref-type="bibr" rid="B114">Tragl (1999)</xref>, <xref ref-type="bibr" rid="B42">Franceschi and Campisi (2014)</xref>, increase of body fat <xref ref-type="bibr" rid="B41">Fasshauer et&#x20;al. (2004)</xref>, <xref ref-type="bibr" rid="B45">Gaillard (2007)</xref>, <xref ref-type="bibr" rid="B33">Chovatiya and Medzhitov (2014)</xref>, lack of exercise <xref ref-type="bibr" rid="B40">Elisia et&#x20;al. (2017)</xref>, <xref ref-type="bibr" rid="B44">Fulop et&#x20;al. (2018)</xref>, age-related normal fibrosis <xref ref-type="bibr" rid="B14">Beneke (1971)</xref>, <xref ref-type="bibr" rid="B86">Nemetschek (1971)</xref>, chronic inflammation as local factors <xref ref-type="bibr" rid="B116">Virchow (1978)</xref>, or smoking via initiation of local hypoxia <xref ref-type="bibr" rid="B27">Brunkhorst et&#x20;al. (2018)</xref>. The innate immune system exhibits pro-inflammatory activation. The number of individual variables suggest a wide range of activation levels, which still depend on cytokine gene polymorphisms, among other factors. Physiological cytokine production and additional pro-inflammatory cytokine activity (pattern, concentration, emitters involved, gradient of increase) determine the activation level of the innate immune system.</p>
</sec>
<sec id="s2-2">
<title>2.2 Tumor Disease</title>
<p>In tumor disease, mutant cells interact with macrophages of the innate immune system localized in the stroma. Mutated cells are genetically altered and genetically unstable parenchymal cells. They are a new cell entity with altered regulatory behavior. In interaction with the normal stroma (immune layer), e.g. in young healthy individuals, mutant cells do not find survival conditions. They persist silently or trigger apoptosis via tissue surveillance <xref ref-type="bibr" rid="B73">L&#xf6;ser (2018)</xref>. Mutant cells in an area pre-damaged by chronic inflammation receive cytokines from the activated stroma, undergo an epithelial-mesenchymal transition <xref ref-type="bibr" rid="B64">Lamouille et&#x20;al. (2014)</xref>, <xref ref-type="bibr" rid="B32">Chockley and Keshamouni (2016)</xref>, can proliferate, disseminate, and reprogram normal macrophages into tumor-associated macrophages <xref ref-type="bibr" rid="B120">Wu and Zhou (2009)</xref>, <xref ref-type="bibr" rid="B58">Karlsson et&#x20;al. (2017)</xref>, <xref ref-type="bibr" rid="B80">Mantovani et&#x20;al. (2017)</xref>. They help to ensure oxygen and nutrient supply to the tumor. Tumor cells, tumor-associated macrophages, and normal stromal cells communicate <italic>via</italic> cytokines. The communication strength depends on tumor cell genetics and stroma activation. It increases with the tumor cell mass and the mass of specific tumor stroma. A mutually activating circular process starts between the tumor cells and the innate immune system. A specific cytokine microclimate is formed around the developing tumor, the size of which grows with the increase in tumor mass. Cytokines enter the lymph nodes with the lymph and enable the tumor cells that have floated there to proliferate. Lymphogenic metastasis begins, continuing downstream in additional lymph nodes according to the same pattern. Organ-specific metastatic patterns are formed <xref ref-type="bibr" rid="B117">Walther (1948)</xref>. The circulating cytokine concentration increases and triggers the general symptoms of tumor disease such as cachexia <xref ref-type="bibr" rid="B10">Arends et&#x20;al. (2015)</xref> and finally the lethal coagulopathy, lung failure, organ failure or lethal space-occupying lesions and tissue destruction. The postulate of Lewis Thomas <xref ref-type="bibr" rid="B110">Thomas (1972)</xref> also applies to tumor disease, according to which the interactions with the organism triggered by the tumor cells are responsible for the disease, i.e.,&#x20;tumor growth, enabling malignant cells to become invasive and destructive, recurrence, and finally induce the lethal general symptoms. Hematogenous metastasis may start when the disseminated tumor cells are adequately supplied with growth factors (cytokines) via further activation of the innate immune system.</p>
</sec>
<sec id="s2-3">
<title>2.3 Sepsis</title>
<p>The initial conditions for the transition of an infection into sepsis are analogous to the survival conditions of mutated cells in the tissue, a pre-activated innate immune system. Sepsis is triggered when the innate immune system no longer succeeds in locally fixing invading pathogens, but allows them to enter the organism. There they interact with the already pre-activated innate immune system. The immune system is activated systemically. Antibiosis or surgical sanitation can reduce or eliminate the pathogen load. Depending on the type of reaction, the pro-inflammatory response is stopped or it continues to escalate in varying degrees <xref ref-type="bibr" rid="B105">Seymour et&#x20;al. (2019)</xref>, for which also cytokine gene polymorphisms are responsible <xref ref-type="bibr" rid="B77">Majetschak and Schade (2001)</xref>, <xref ref-type="bibr" rid="B52">Hotchkiss et&#x20;al. (2016)</xref>, <xref ref-type="bibr" rid="B111">Thomas (2020a)</xref>, <xref ref-type="bibr" rid="B112">Thomas (2020b)</xref>. Pro-inflammatory cytokines act on endothelial cells and the coagulation system. Microthrombi amplify inflammation through secretion of growth factors and cytokines <xref ref-type="bibr" rid="B52">Hotchkiss et&#x20;al. (2016)</xref>. The endothelial permeabilization barrier is opened, fluid retention in tissues occurs, blood pressure drops, and must be stabilized with fluid administration <xref ref-type="bibr" rid="B27">Brunkhorst et&#x20;al. (2018)</xref>. Prolonged oxygen diffusion pathways and the resulting tissue hypoxia trigger cytokine release causing a &#x201c;second hit&#x201d;, resulting in metabolic changes in the parenchyma <xref ref-type="bibr" rid="B26">Bomans et&#x20;al. (2018)</xref>. Organ failure, particularly of the kidneys, lungs, and liver is imminent. Endogenous molecules with immunogenic effects, especially mitochondrial DNA <xref ref-type="bibr" rid="B43">Franceschi et&#x20;al. (2018)</xref>, released e.g. after trauma, burns, pancreatitis or surgery, can have the same effect as exogenous pathogens.</p>
</sec>
<sec id="s2-4">
<title>2.4 Relapse</title>
<p>Tumors and sepsis have a recurrence behavior, the frequency of which correlates with the stage of the primary disease. In both diseases, the activated innate immune system is an initial prerequisite for the primary disease, which is brought to dysregulation in the course of the disease. After tumor removal and elimination of infection, the activation status reduces but remains at least at the level before disease onset. Thus, cytokines are produced for remaining tumor cells as a result of pro-inflammatory activation <xref ref-type="bibr" rid="B46">Gastpar (1982)</xref>, <xref ref-type="bibr" rid="B39">Eichinger and Lechner (2004)</xref>, <xref ref-type="bibr" rid="B10">Arends et&#x20;al. (2015)</xref>, <xref ref-type="bibr" rid="B67">Lippman (2016)</xref>, which promote their proliferation and allow the organization of the tumor stroma. The process kinetics is determined by the proliferation rate of tumor cells, the availability of cytokines, and by the ability of tumor cells to organize their own stroma with connection to the blood supply. After clearance of the systemic infection, the innate immune system has an activation status at least equivalent to that before septic shock. The infection itself appears to have triggered irreversible elements of trained immunity <xref ref-type="bibr" rid="B26">Bomans et&#x20;al. (2018)</xref>. Surviving patients after septic shock thus die in 50% within the first two post-sepsis years from persistent and secondary nosocomial infections, tumors, or cardiac failure <xref ref-type="bibr" rid="B94">Prescott et&#x20;al. (2016)</xref>.</p>
</sec>
</sec>
<sec id="s3">
<title>3 Model</title>
<sec id="s3-1">
<title>3.1 Schematic Model for Tumor Disease and Sepsis</title>
<p>Organic tissue consisting of parenchymal cells and immune cells is shown schematically in <xref ref-type="fig" rid="F1">Figure &#x2009;1</xref>. We depict the initial and final configurations for tumor disease and sepsis on a tissue element. The tissue element consists of the epithelial parenchyma, the basal membrane, and the stroma. The parenchyma is the organ-specific functional layer. The basal membrane separates the parenchyma and stroma and is made of collagen of type IV. In the stroma, blood supply, lymphatic drainage, and immune response occur. The stroma consists of an extracellular matrix and embedded cells that do not form a solid association. The extracellular matrix is structurally composed of collagen, glycoproteins, proteoglycans, and water. Cells in the stroma are resident fibroblasts and fat cells, and mobile cells (macrophages, mast cells, granulocytes, and plasma cells).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Scheme of a tissue element showing the initial progression of tumor disease <bold>(A&#x2013;C)</bold>, the initial configuration for sepsis <bold>(D)</bold> and the final configurations found for both tumor disease and sepsis <bold>(E)</bold>,<bold>(F)</bold>.</p>
</caption>
<graphic xlink:href="fnetp-01-730385-g001.tif"/>
</fig>
<p>The initial process of carcinogenesis is shown in <xref ref-type="fig" rid="F1">Figures &#x2009;1A&#x2013;C</xref>. In <xref ref-type="fig" rid="F1">Figure&#x20;1A</xref>, the parenchyma is normal, the stroma is inflammatorily activated. In <xref ref-type="fig" rid="F1">Figure&#x20;1B</xref>, a mutation of a tumor cell has occurred in the parenchyma, the inflammatory activation of the stroma continues. Finally in <xref ref-type="fig" rid="F1">Figure&#x20;1C</xref>, the mutant cells proliferate, break through the basal membrane and migrate into the blood and lymphatic vessels, and cytokines are emitted.</p>
<p>
<xref ref-type="fig" rid="F1">Figures 1D&#x2013;F</xref> shows the systemic effects of the final process of tumor disease and sepsis: <xref ref-type="fig" rid="F1">Figure&#x20;1D</xref> depicts a tissue element that is not directly affected by tumor, metastasis, or primary inflammation. The stroma exhibits inflammatory activation. In <xref ref-type="fig" rid="F1">Figure&#x20;1E</xref>, a systemic cytokine storm is occurring. Cytokine production by the stromal cells is additionally stimulated. The parenchyma responds to the primary and secondary cytokine storm by uncoupling mitochondrial respiration and switching to aerobic glycolysis. The energy supply is no longer sufficient for organ-specific cellular functions and the organ fails. <xref ref-type="fig" rid="F1">Figure&#x20;1F</xref> shows a variant of <xref ref-type="fig" rid="F1">Figure&#x20;1E</xref>. The cytokine storm activates the endothelium, blood coagulation is activated, oxygen transport breaks down, and hypoxia arises. The stromal cells respond with cytokine release. Both together, the hypoxia and the cytokine release, lead to the collapse of organ-specific cell functions in the parenchyma and the organ&#x20;fails.</p>
</sec>
<sec id="s3-2">
<title>3.2 Dynamical Two-Layer Network Model</title>
<p>The unified disease model with the reference point given by the <italic>innate immune system</italic> is the basis for our model, which includes disease-specific initial conditions, mutant cells for tumor disease, and infection-driven cytokine dysregulation. A volume element of tissue consisting of parenchyma, basal membrane and stroma is used as a model for tumor disease and sepsis, describing the functional interactions between parenchyma (organ tissue) and stroma (immune layer). We represent the network layer of parenchymal cells (superscript 1) by <italic>N</italic> phase oscillators <inline-formula id="inf1">
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<p>The use of phase oscillators for the functional modeling of the interacting parenchymal cells and immune cells is motivated by the fact that phase oscillator networks are a paradigmatic model for collective coherent and incoherent dynamics. As discussed in detail in <xref ref-type="sec" rid="s3-3">Section 3.3</xref>, healthy cells and tumor cells differ by their metabolic activity, i.e.,&#x20;tumor cells are less energy-efficient and thus have a faster cellular metabolism, which is reflected in our phase oscillator model by a higher frequency. Thus in the healthy homeostatic equilibrium state all parenchymal cells have the same lower frequency, while the pathological state splits into two clusters with different frequencies, healthy, and unhealthy, i.e.,&#x20;a multifrequency cluster. The healthy state is assumed to be characterized by regular periodic, fully synchronized dynamics of the phase oscillators, i.e.,&#x20;all cells show the same collective frequency of cellular metabolism. The pathological state is described by multifrequency clusters with different frequencies, i.e.,&#x20;the pathological cells in the parenchyma attain a higher frequency, while the healthy cells are still frequency-synchronized with the &#x201c;healthy&#x201d; frequency. This loss of synchrony reflects the fact that in case of tumor disease, the malignant mutation basically leads to a loss of performance of the parenchymal cells. As a consequence, they are no longer fully coordinated, which leads to a loss of proliferation and apoptosis control <xref ref-type="bibr" rid="B71">Longo (2011)</xref>, <xref ref-type="bibr" rid="B119">Weinberg (2014)</xref>. Such a pathological condition leads also to an alteration of the metabolic activity of the immune cells <xref ref-type="bibr" rid="B34">Coussens and Werb (2002)</xref>, <xref ref-type="bibr" rid="B50">Heerboth et&#x20;al. (2015)</xref>, <xref ref-type="bibr" rid="B32">Chockley and Keshamouni (2016)</xref>, <xref ref-type="bibr" rid="B93">Porporato (2016)</xref>, <xref ref-type="bibr" rid="B2">Razak et&#x20;al. (2018)</xref>, <xref ref-type="bibr" rid="B47">Greten and Grivennikov (2019)</xref>. In case of sepsis, i.e.,&#x20;a systemic inflammation, cells belonging to the innate immune system produce cytokines in an unregulated way affecting the parenchyma or microcirculation leading to organ failure <xref ref-type="bibr" rid="B108">Singer et&#x20;al. (2016)</xref>, <xref ref-type="bibr" rid="B82">Matsumoto et&#x20;al. (2018)</xref> which is also associated in our model with the loss of synchrony.</p>
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</inline-formula> represents the phase of the <italic>i</italic>th oscillator (<italic>i</italic>&#x20;&#x3d; 1, <italic>&#x2026;</italic> , <italic>N</italic>) in the <italic>&#x3bc;</italic>th layer (<italic>&#x3bc;</italic> &#x3d; 1, 2), <inline-formula id="inf6">
<mml:math id="m8">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3c9;</mml:mi>
</mml:mrow>
<mml:mrow>
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</mml:mrow>
<mml:mrow>
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<mml:mo>&#x2261;</mml:mo>
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</inline-formula> are the natural oscillator frequencies of the parenchymal cells which are distributed according to a probability distribution <italic>&#x3c1;</italic>(<italic>&#x3c9;</italic>
<sup>1</sup>) &#x3d; (1 &#x2212; <italic>r</italic>)<italic>&#x3b4;</italic>(<italic>&#x3c9;</italic>
<sup>1</sup> &#x2212; <italic>&#x3c9;</italic>
<sup>
<italic>h</italic>
</sup>) &#x2b; <italic>r&#x3b4;</italic>(<italic>&#x3c9;</italic>
<sup>1</sup> &#x2212; <italic>&#x3c9;</italic>
<sup>
<italic>p</italic>
</sup>) where <italic>r</italic> is the fraction of pathological parenchymal cells relative to the number of all parenchymal cells&#xa0;<italic>N</italic>, <italic>&#x3b4;</italic> is the Dirac delta function, and <italic>&#x3c9;</italic>
<sup>
<italic>p</italic>
</sup> and <italic>&#x3c9;</italic>
<sup>
<italic>h</italic>
</sup> are the natural frequencies of pathological and healthy parenchymal cells, respectively. The value of <italic>&#x3c9;</italic>
<sup>2</sup> &#x2261; <italic>&#x3c9;</italic> is the natural frequency of the immune cells. The interaction between the oscillators within each layer is determined by the intralayer connectivity weights <inline-formula id="inf7">
<mml:math id="m9">
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<mml:mrow>
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<mml:mo>&#x2208;</mml:mo>
<mml:mrow>
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<mml:mrow>
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</mml:mrow>
<mml:mo stretchy="false">]</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> (fixed interaction within an organ) and <inline-formula id="inf8">
<mml:math id="m10">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>&#x2208;</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">[</mml:mo>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
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</mml:mrow>
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</inline-formula> (adaptive interaction mediated by cytokines), where the parenchymal layer has both fixed and adaptive couplings, while the immune layer has only adaptive coupling. Between the layers the interlayer coupling weights <italic>&#x3c3;</italic> &#x2265; 0 are fixed and symmetric for both directions of interaction. The parameter <italic>&#x3b1;</italic> is a phase lag of the interaction modeling a time-delay <xref ref-type="bibr" rid="B98">Sakaguchi and Kuramoto (1986)</xref>, <xref ref-type="bibr" rid="B75">Madadi Asl et&#x20;al. (2018)</xref>. The adaptation rates 0&#x20;&#x3c; <italic>&#x3f5;</italic>
<sup>
<italic>&#x3bc;</italic>
</sup> &#x226a; 1 separate the time scales of the slow dynamics of the coupling weights and the fast dynamics of the oscillatory system. The adaptation rate of the parenchymal layer <italic>&#x3f5;</italic>
<sup>1</sup> is assumed to be slow compared to the adaptation rate of the immune layer <italic>&#x3f5;</italic>
<sup>2</sup>, i.e.,&#x20;<italic>&#x3f5;</italic>
<sup>1</sup> &#x226a;&#x20;<italic>&#x3f5;</italic>
<sup>2</sup> to account for the faster reaction of the immune cells <xref ref-type="bibr" rid="B85">Mor&#xe1;n et&#x20;al. (2013)</xref>, <xref ref-type="bibr" rid="B6">Altan-Bonnet and Mukherjee (2019)</xref>. Thus we have two classes of adaptive coupling weights modeling two different cytokine mechanisms on two different timescales. As a consequence of choosing two significantly different values for <italic>&#x3f5;</italic>
<sup>1</sup> and <italic>&#x3f5;</italic>
<sup>2</sup>, we obtain a system with multiple times scale dynamics, i.e.,&#x20;&#x201c;slow-fast-faster&#x201d; dynamics (<italic>&#x3f5;</italic>
<sup>1</sup> &#x226a; <italic>&#x3f5;</italic>
<sup>2</sup> &#x226a; 1) <xref ref-type="bibr" rid="B62">Kuehn (2015)</xref>.</p>
<p>The phase lag parameter <italic>&#x3b2;</italic> of the adaptation function <inline-formula id="inf9">
<mml:math id="m11">
<mml:mi>sin</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>&#x2212;</mml:mo>
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3b2;</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>, also called plasticity rule in the neuroscience terminology <xref ref-type="bibr" rid="B8">Aoki and Aoyagi (2009)</xref>, describes different adaptation rules that may occur. For instance, for <inline-formula id="inf110">
<mml:math id="m112">
<mml:mi>&#x3b2;</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>(</mml:mo>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x2b;</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
<mml:mo>)</mml:mo>
<mml:mo>
</mml:mo>
<mml:mi>&#x3c0;</mml:mi>
<mml:mo>/</mml:mo>
<mml:mo>2</mml:mo>
</mml:math>
</inline-formula>, a symmetric rule <xref ref-type="bibr" rid="B51">Hoppensteadt and Izhikevich (1996)</xref>, <xref ref-type="bibr" rid="B104">Seliger et&#x20;al. (2002)</xref>, <xref ref-type="bibr" rid="B9">Aoki (2015)</xref>, <xref ref-type="bibr" rid="B96">R&#xf6;hr et&#x20;al. (2019)</xref> is obtained where the coupling <italic>&#x3ba;</italic>
<sub>
<italic>ij</italic>
</sub> decreases (increases) between any two systems with close-by phases. If <italic>&#x3b2;</italic> &#x3d; 0, the link <italic>&#x3ba;</italic>
<sub>
<italic>ij</italic>
</sub> will be strengthened if the <italic>i</italic>th oscillator is advancing the <italic>j</italic>th. Such a causal relationship is typical for spike-timing dependent plasticity in neuroscience <xref ref-type="bibr" rid="B76">Maistrenko et&#x20;al. (2007)</xref>, <xref ref-type="bibr" rid="B29">Caporale and Dan (2008)</xref>, <xref ref-type="bibr" rid="B92">Popovych et&#x20;al. (2013)</xref>, <xref ref-type="bibr" rid="B74">L&#xfc;cken et&#x20;al. (2016)</xref>. The matrix elements <inline-formula id="inf10">
<mml:math id="m12">
<mml:msubsup>
<mml:mrow>
<mml:mi>a</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
<mml:mo>&#x2208;</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">{</mml:mo>
<mml:mrow>
<mml:mn>0,1</mml:mn>
</mml:mrow>
<mml:mo stretchy="false">}</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> of the adjacency matrix <italic>A</italic> in the parenchymal layer are chosen as <inline-formula id="inf11">
<mml:math id="m13">
<mml:msubsup>
<mml:mrow>
<mml:mi>a</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
</mml:math>
</inline-formula> if <italic>i</italic>&#x20;&#x2260; <italic>j</italic> (global coupling). For normalization of the coupling terms the coupling sums in <xref ref-type="disp-formula" rid="e1">Eqs. 1</xref>, <xref ref-type="disp-formula" rid="e2">2</xref> are multiplied by the normalization factor&#x20;<inline-formula id="inf12">
<mml:math id="m14">
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>N</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:math>
</inline-formula>.</p>
</sec>
<sec id="s3-3">
<title>3.3 Methodology and Measures</title>
<p>Heterogeneous dynamics, e.g., multifrequency clusters and tumor growth, may arise through the dynamic interaction of parenchymal cells, immune cells, and localized cytokine activity in a self-organized self-adaptive manner, even if the system parameters in the layers are chosen uniformly, i.e.,&#x20;homogeneous <xref ref-type="bibr" rid="B15">Berner et&#x20;al. (2019a)</xref>, <xref ref-type="bibr" rid="B18">Berner et&#x20;al. (2020a)</xref>. Heterogeneity can enter the parameters of oscillator networks in various ways. Very prominent are heterogeneities in the natural frequencies of the oscillators or in the connectivity structure <xref ref-type="bibr" rid="B4">Acebr&#xf3;n et&#x20;al. (2005)</xref>. Heterogeneous frequencies <italic>&#x3c9;</italic>
<sub>
<italic>i</italic>
</sub> are used to model pathological parenchymal cells which occur by spontaneous random mutations. We assume that all healthy cells possess the same natural frequency <italic>&#x3c9;</italic>
<sub>
<italic>i</italic>
</sub> &#x3d; <italic>&#x3c9;</italic>
<sup>
<italic>h</italic>
</sup>, and a fraction <italic>r</italic> of randomly chosen pathological cells possess the natural frequency <italic>&#x3c9;</italic>
<sub>
<italic>i</italic>
</sub> &#x3d; <italic>&#x3c9;</italic>
<sup>
<italic>p</italic>
</sup>. The characterization of tumor cells via their metabolic properties <xref ref-type="bibr" rid="B71">Longo (2011)</xref>, <xref ref-type="bibr" rid="B119">Weinberg (2014)</xref> has revealed a difference in the metabolic activity between tumor and healthy cells <xref ref-type="bibr" rid="B118">Warburg et&#x20;al. (1924)</xref>. Warburg demonstrated that cells after a malignant mutation obtain their energy <italic>via</italic> aerobic glycolysis, which provides only 4&#xa0;mol ATP/mol glucose, in contrast to normal cells whose metabolism is based upon mitochondrial breathing yielding 36&#xa0;mol ATP/mol glucose. Thus tumor cells have a metabolic efficiency of only about 10% of healthy cells, and therefore they need more glucose. Other general differences in metabolic activity between tumor cells and healthy cells include proliferation rate, apoptosis rate, initiation of angiogenesis, tissue invasion, or metastatic capacity. Here, quantitative differences exist between different organ tumors. Ultimately, any change in metabolic performance, regardless of which metabolic branch is affected (structural, energetic, cell division, or special metabolism), can be conceived as a frequency change.</p>
<p>Using numerical simulations, we study whether the healthy state (frequency synchronized) is persistent also in the presence of a few pathological cells. Under certain conditions depending on various parameters (age, inflammaging, chronic inflammation, other basic diseases, obesity, smoking, lack of exercise), an unregulated cytokine expression and hence a possibly lethal tumor can occur. In these cases, the healthy (synchronized) state is not persistent anymore against the perturbation by the heterogeneity (tumor cells). For our study, the cytokine adaptivity parameter (which we call <italic>age parameter</italic>) <italic>&#x3b2;</italic> and the fraction <italic>r</italic> are considered as the main model parameters to account for the various system conditions. In the case of sepsis, we introduce a fixed initial perturbation of the cytokine activity in the immune layer representing a systemic immune response, while keeping the natural frequencies uniform. Similar to the tumor disease, we study the effect of this initial system perturbation on the emergence of the healthy state in dependence of the age parameter <italic>&#x3b2;</italic>. For our simulations we have used a Runge&#x2013;Kutta method of order 4 with a fixed stepsize of &#x394;<italic>t</italic>&#x20;&#x3d; 0.05 and simulation time of <italic>T</italic>
<sub>
<italic>s</italic>
</sub> &#x3d; 2000 time units where we have discarded the first 1,000&#x20;time units to account for transient dynamics.</p>
<p>In order to quantitatively characterize the dynamic collective state of the two-layer network, we introduce several measures. First, we use the mean phase velocities of the oscillators <italic>j</italic> in both layers <italic>&#x3bc;</italic> &#x3d; 1, 2<disp-formula id="e3">
<mml:math id="m15">
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<mml:mi>j</mml:mi>
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<mml:mi>&#x3bc;</mml:mi>
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</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
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<mml:mrow>
<mml:mi>T</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:msubsup>
<mml:mrow>
<mml:mo>&#x222b;</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mo>&#x2b;</mml:mo>
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</mml:mrow>
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<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
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<mml:mi>&#x3d5;</mml:mi>
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<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2032;</mml:mo>
</mml:mrow>
</mml:msup>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi mathvariant="normal">d</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2032;</mml:mo>
</mml:mrow>
</mml:msup>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>T</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:mi>T</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:math>
<label>(3)</label>
</disp-formula>with averaging time window <italic>T</italic>, and the spatially averaged mean phase velocity for each layer <inline-formula id="inf13">
<mml:math id="m16">
<mml:msup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3c9;</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msup>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>N</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:msubsup>
<mml:mrow>
<mml:mo movablelimits="false" form="prefix">&#x2211;</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>N</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>.</p>
<p>Furthermore, for both layers <italic>&#x3bc;</italic> &#x3d; 1, 2 we calculate the ensemble average <italic>s</italic>
<sup>
<italic>&#x3bc;</italic>
</sup> (ensemble size <italic>N</italic>
<sub>
<italic>E</italic>
</sub> with ensemble elements <italic>E</italic>) of the standard deviation <inline-formula id="inf14">
<mml:math id="m17">
<mml:msub>
<mml:mrow>
<mml:mi>&#x3c3;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3c7;</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
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<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3c9;</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msup>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:msqrt>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>N</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:msubsup>
<mml:mrow>
<mml:mo movablelimits="false" form="prefix">&#x2211;</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
<mml:mo>&#x3d;</mml:mo>
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</mml:math>
</inline-formula> of the mean phase velocities<disp-formula id="e4">
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<label>(4)</label>
</disp-formula>and the ensemble average of the corresponding normalized standard deviation <inline-formula id="inf15">
<mml:math id="m19">
<mml:mfrac>
<mml:mrow>
<mml:msub>
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</inline-formula>. If the latter quantities are non-zero, they indicate the formation of multifrequency clusters, where the respective layer splits into clusters with different frequencies, which is indicative of a pathological&#x20;state.</p>
<p>In systems of adaptively coupled phase oscillators one often encounters frequency-synchronized dynamics. If the frequency is the same, the phases may still exhibit different behavior. They may either be all the same (complete in-phase synchronization) or they may be phase-locked such that each phase oscillator oscillates with the same frequency but a fixed, time-independent phase difference. A special case is a splay state, where the phase differences of all oscillators average out, for instance if the relative phase of the <italic>j</italic>th oscillator is 2<italic>&#x3c0;j</italic>/<italic>N</italic>, <italic>j</italic>&#x20;&#x3d; 1, &#x2026; , <italic>N</italic>. In systems of the form <xref ref-type="disp-formula" rid="e1">Eqs. 1</xref>, <xref ref-type="disp-formula" rid="e2">2</xref>, it is possible to find in-phase synchronization and splay states, and they may be interpreted as different quality of synchronization <xref ref-type="bibr" rid="B19">Berner et&#x20;al. (2020b)</xref>, <xref ref-type="bibr" rid="B22">Berner et&#x20;al. (2021c)</xref>. In our set-up a splay state is interpreted as a more vulnerable collective state (synchronization of parenchyma and immune layer) where small perturbations can quickly lead to partial or complete desynchronization.</p>
</sec>
<sec id="s3-4">
<title>3.4 Physiological Interpretation of Model Parameters</title>
<p>
<xref ref-type="table" rid="T1">Table&#x20;1</xref> gives an overview of the dynamical variables, parameters and measures of the model. In the right column the physiological meaning of all quantities is given in a concise manner. In more detail, the quantities of the mathematical model which are listed in <xref ref-type="table" rid="T1">Table&#x20;1</xref> have the following physiological correspondence:<list list-type="simple">
<list-item>
<p>1) Variable <italic>&#x3d5;</italic>
<sub>
<italic>i</italic>
</sub> mimics the metabolic activity of a parenchymal or immune cell <italic>i</italic> as a universal oscillatory phase variable. Here our aim is not to describe physiological processes on a detailed biochemical level, e.g., C-reactive protein (CRP) production after inflammatory activation,&#x20;etc.</p>
</list-item>
<list-item>
<p>2) Variable <italic>&#x3ba;</italic>
<sub>
<italic>ij</italic>
</sub> describes the cytokine activity mediating information flow between cells <italic>j</italic> and <italic>i</italic>. It stands for the susceptibility of communications between cells via cytokines. Cytokines have pleiotropic properties, i.e.,&#x20;they can exert different, even contrary, effects depending on the initial situation and in combination with other cytokines. Therefore we model them by an adaptive coupling strength. Reaction strength of cytokines is due to individually different gene polymorphisms.</p>
</list-item>
<list-item>
<p>3) Parameter <italic>&#x3b1;</italic> models the phase lag of the intralayer cell-to-cell coupling. Its origin is the time delay from the activation of a defined metabolic branch until the mediator release; within the inflammatory cascade, characteristic time delays exist for all reaction sub-steps starting from the triggering of the inflammatory reaction, for example, the reaction time of the individual liver cells starting from the input signal until the maximum blood concentration of interleukin IL-6 (2&#xa0;h) and CRP (12&#xa0;h) is reached.</p>
</list-item>
<list-item>
<p>4) Parameter <italic>&#x3b2;</italic> governs the adaptivity (or plasticity) rule of the cytokines. It mimicks a systemic sum parameter which may account for different influences such as physiological changes due to age in the extracellular matrix, inflammaging, systemic and local inflammatory baseline, adiposity, pre-existing illness, physical inactivity, nutritional influence, and others. In case of tumor disease, it can include the malignancy grade of tumor cells. For the sake of brevity, we call this parameter the age parameter.</p>
</list-item>
<list-item>
<p>5) Parameter <italic>&#x3c9;</italic> denotes the natural frequency of the basic metabolic activity of a single cell. For instance, it can stand for the minor CRP production in a normal healthy&#x20;state.</p>
</list-item>
<list-item>
<p>6) Parameters <italic>&#x3f5;</italic>
<sup>1</sup> and <italic>&#x3f5;</italic>
<sup>2</sup> denote the inverse relaxation times (half-life) of the cytokines in the parenchymal and immune layer, respectively.</p>
</list-item>
<list-item>
<p>7) Parameter <italic>r</italic> denotes the fraction of mutant (pathological) parenchymal cells in the tissue element, and is implemented in the model as the fraction of cells with a deviating (pathological) natural frequency <italic>&#x3c9;</italic>
<sup>
<italic>p</italic>
</sup>.</p>
</list-item>
<list-item>
<p>8) Parameter <italic>a</italic>
<sub>
<italic>ij</italic>
</sub> denotes the genetically fixed intercellular communication pathways between parenchymal cells, they are <italic>wired</italic> by fixed cell-to-cell connections. In contrast, communication of parenchymal cells via cytokines and of cells within the immune layer runs in an open communication channel, which is controlled self-adaptively, after <xref ref-type="bibr" rid="B106">Shannon (1948)</xref>.</p>
</list-item>
<list-item>
<p>9) Parameter <italic>&#x3c3;</italic> denotes the interlayer coupling strength between the parenchymal and immune cells. It can be due to a mass transfer, e.g., cytokine expression of macrophages in the immune layer, and signal transfer into the parenchyma: macrophages invade the extracellular matrix and penetrate the basal membrane to the parenchyma.</p>
</list-item>
<list-item>
<p>10) The mean phase velocity <inline-formula id="inf16">
<mml:math id="m20">
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
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</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
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</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> is a measure which describes the collective frequency of the cellular metabolism of cell <italic>i</italic> due to all interactions with other cells in both layers. It denotes the system performance of a single metabolic branch of the parenchymal or immune cells of a tissue element according to their activation state (normal healthy state or pro-inflammatory activation with increased CRP production).</p>
</list-item>
<list-item>
<p>11) The ensemble-averaged standard deviation of the mean phase velocities <italic>s</italic>
<sup>1</sup>, <italic>s</italic>
<sup>2</sup> is a measure which characterizes the inhomogeneity of metabolic activity within the parenchyma and the stroma (immune layer), respectively. It assumes non-zero values if the respective layer is not frequency-synchronized and splits into multifrequency clusters, e.g., a healthy cluster with one frequency and a pathological cluster with another frequency, and thus is a measure of pathogenicity in case of the parenchymal layer, or activation in case of the immune&#x20;layer.</p>
</list-item>
</list>
</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Transcription table for the dynamical variables, parameters, and measures of the model (superscripts referring to layers <italic>&#x3bc;</italic> &#x3d; 1 and <italic>&#x3bc;</italic> &#x3d; 2 omitted).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left"/>
<th align="center">Symbol</th>
<th align="center">Name</th>
<th align="center">Physiological meaning</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="2" align="left">Dynamical variable</td>
<td align="left">
<italic>&#x3d5;</italic>
<sub>
<italic>i</italic>
</sub>
</td>
<td align="left">Phase</td>
<td align="left">Metabolic activity</td>
</tr>
<tr>
<td align="left">
<italic>&#x3ba;</italic>
<sub>
<italic>ij</italic>
</sub>
</td>
<td align="left">Coupling weight</td>
<td align="left">Cytokine activity</td>
</tr>
<tr>
<td rowspan="7" align="left">Parameter</td>
<td align="left">
<italic>&#x3b1;</italic>
</td>
<td align="left">Phase lag</td>
<td align="left">Metabolic interaction delay</td>
</tr>
<tr>
<td align="left">
<italic>&#x3b2;</italic>
</td>
<td align="left">Plasticity rule</td>
<td align="left">Age, inflammaging, diseases, malignity (tumor disease)</td>
</tr>
<tr>
<td align="left">
<italic>&#x3c9;</italic>
</td>
<td align="left">Natural frequency</td>
<td align="left">Natural frequency of cellular metabolism</td>
</tr>
<tr>
<td align="left">
<italic>&#x3f5;</italic>
</td>
<td align="left">Time scale ratios</td>
<td align="left">Time scales of cytokine activity</td>
</tr>
<tr>
<td align="left">
<italic>r</italic>
</td>
<td align="left">Inhomogeneity ratio</td>
<td align="left">Fraction of tumor cells</td>
</tr>
<tr>
<td align="left">
<italic>a</italic>
<sub>
<italic>ij</italic>
</sub>
</td>
<td align="left">Connectivity</td>
<td align="left">Fixed parenchymal cell-cell interaction</td>
</tr>
<tr>
<td align="left">
<italic>&#x3c3;</italic>
</td>
<td align="left">Interlayer coupling</td>
<td align="left">Interaction between immune and parenchymal cells</td>
</tr>
<tr>
<td rowspan="2" align="left">Measure</td>
<td align="left">
<inline-formula id="inf17">
<mml:math id="m21">
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
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<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td align="left">Mean phase velocity</td>
<td align="left">Collective frequency of cellular metabolism</td>
</tr>
<tr>
<td align="left">
<italic>s</italic>
</td>
<td align="left">Standard deviation (see <xref ref-type="disp-formula" rid="e4">Eq. 4</xref>)</td>
<td align="left">Pathogenicity (parenchymal layer), activation (immune layer)</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
</sec>
<sec id="s4">
<title>4 Tumor Disease</title>
<p>In this section, we present exemplary computer simulations of our model to demonstrate different dynamic scenarios which this model can produce already in its simplest form. The model has not been refined or optimized with respect to the parameters, but our concern here is to display simulations which can describe principally different evolutions and outcomes of tumor disease. We assume <italic>N</italic>&#x20;&#x3d; 200, <italic>&#x3f5;</italic>
<sup>1</sup> &#x3d; 0.03, <italic>&#x3f5;</italic>
<sup>2</sup> &#x3d; 0.3, <inline-formula id="inf18">
<mml:math id="m22">
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<mml:mrow>
<mml:mi>a</mml:mi>
</mml:mrow>
<mml:mrow>
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</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
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<mml:mn>1</mml:mn>
</mml:math>
</inline-formula> (global coupling in the parenchymal layer), <italic>&#x3c3;</italic> &#x3d; 0.3 (interlayer coupling), natural frequencies <italic>&#x3c9;</italic>
<sup>
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</sup> &#x3d; <italic>&#x3c9;</italic>
<sup>2</sup> &#x3d; 0 (co-rotating frame of healthy parenchymal cells), <italic>&#x3c9;</italic>
<sup>
<italic>p</italic>
</sup> &#x3d; 1 (pathological cells describing spontaneous mutation, chosen randomly for <italic>R</italic> oscillators where <italic>r</italic>&#x20;&#x3d; <italic>R</italic>/<italic>N</italic>), and the coupling delay parameter <italic>&#x3b1;</italic> is chosen the same for both layers such that the frequencies of the healthy parenchymal and immune layers are similar. The parameter <italic>&#x3b2;</italic> is used to model the influence of age, inflammation status, environment etc. and also the degree of malignancy of the&#x20;tumor.</p>
<p>Our system exhibits various dynamic patterns resembling healthy and pathological states. The results are depicted in <xref ref-type="fig" rid="F2">Figure&#x20;2</xref>, where the mean phase velocities <inline-formula id="inf19">
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<mml:mrow>
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</mml:mover>
</mml:mrow>
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<mml:mi>j</mml:mi>
</mml:mrow>
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</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> are plotted in the right panel, and the absolute differences of the mean phase velocities with respect to a reference oscillator in the parenchyma <inline-formula id="inf20">
<mml:math id="m24">
<mml:mrow>
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<mml:mrow>
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</mml:mover>
</mml:mrow>
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<mml:mi>0</mml:mi>
</mml:mrow>
<mml:mrow>
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</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> and in the immune layer <inline-formula id="inf21">
<mml:math id="m25">
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>3</mml:mi>
<mml:mi>0</mml:mi>
<mml:mi>0</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>, respectively, are plotted in the left panel. <xref ref-type="fig" rid="F2">Figure&#x20;2A</xref> shows a healthy state with a low age parameter <italic>&#x3b2;</italic> &#x3d; 0.45<italic>&#x3c0;</italic> and only two tumor cells (<italic>r</italic>&#x20;&#x3d; 1<italic>%</italic>) in the parenchymal layer. Although the two tumor cells in the parenchyma have different frequencies, the frequency-synchronized state with the healthy cells can be maintained due to the coupling. The coupled cooperative dynamics leads to a completely in-phase synchronized state in both layers. Note that the collective frequencies in the parenchymal layer and the immune layer are different (right panel) since the coupling terms are different. The same synchronized state of the parenchyma holds in <xref ref-type="fig" rid="F2">Figure&#x20;2B</xref> for increased age parameter <italic>&#x3b2;</italic> &#x3d; 0.55<italic>&#x3c0;</italic> and increased number of tumor cells (<italic>r</italic>&#x20;&#x3d; 4<italic>%</italic>), but first indications of pathological behavior are visible in the changed activity of the immune layer, showing lower frequencies of the associated immune cells coupled to the tumor cells (right panel, <italic>j</italic>&#x20;&#x3d; 393, &#x2026; , 400). For higher age parameter <italic>&#x3b2;</italic> &#x3d; 0.60<italic>&#x3c0;</italic> and the same number of tumor cells (<italic>r</italic>&#x20;&#x3d; 4<italic>%</italic>), <xref ref-type="fig" rid="F2">Figure&#x20;2C</xref> shows a scenario of an emergent pathological state, i.e.,&#x20;a two-frequency cluster with higher frequency of the pathological cells (red), in the parenchymal layer. A corresponding cluster of lower frequencies is observed in the immune layer (<xref ref-type="fig" rid="F2">Figure&#x20;2C</xref>) as well. With increasing age parameter <italic>&#x3b2;</italic> &#x3d; 0.66<italic>&#x3c0;</italic> and tumor size <italic>r</italic>&#x20;&#x3d; 7.5<italic>%</italic>, <xref ref-type="fig" rid="F2">Figure&#x20;2D</xref> shows an even more pathological state, where the frequency of the split-off pathological cluster (red) in the parenchyma is distinctly more different from the healthy cluster (blue), while the immune layer is no longer supporting a two-cluster state but has adjusted in frequency to the parenchyma (right panel). This indicates an essential change in the dynamic state which is frequency synchronized close to zero, which indicates the absence of strong coupling contributions to the frequency. This frequency synchronization between parenchymal and immune layer is maintained if the large age parameter <italic>&#x3b2;</italic> &#x3d; 0.66<italic>&#x3c0;</italic> is kept, but the number of tumor cells is chosen as zero (<xref ref-type="fig" rid="F2">Figure&#x20;2E</xref>), and a healthy completely frequency-synchronized state is obtained. In the following, we will characterize this new dynamic state in more detail.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Dynamical scenarios for healthy states without clusters and pathological states with multifrequency clusters for different values of <italic>&#x3b2;</italic> and <italic>r</italic>. The left panel shows the absolute differences of the mean phase velocities <inline-formula id="inf22">
<mml:math id="m26">
<mml:mi mathvariant="normal">&#x394;</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
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</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:mo stretchy="false">&#x7c;</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>/</mml:mo>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>1</mml:mi>
<mml:mi>0</mml:mi>
<mml:mi>0</mml:mi>
<mml:mo>/</mml:mo>
<mml:mi>3</mml:mi>
<mml:mi>0</mml:mi>
<mml:mi>0</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>/</mml:mo>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
<mml:mo stretchy="false">&#x7c;</mml:mo>
</mml:math>
</inline-formula>, whereas the right panel shows mean phase velocities <inline-formula id="inf23">
<mml:math id="m27">
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>. The parenchymal nodes are labeled <italic>j</italic>&#x20;&#x3d; 1, &#x2026; , 200, and the immune nodes <italic>j</italic>&#x20;&#x3d; 201, &#x2026; , 400 for <italic>&#x3b2;</italic> &#x3d; 0.45<italic>&#x3c0;</italic> and <italic>r</italic>&#x20;&#x3d; 1<italic>%</italic> <bold>(A)</bold>, <italic>&#x3b2;</italic> &#x3d; 0.55<italic>&#x3c0;</italic> and <italic>r</italic>&#x20;&#x3d; 4<italic>%</italic> <bold>(B)</bold>, <italic>&#x3b2;</italic> &#x3d; 0.60<italic>&#x3c0;</italic> and <italic>r</italic>&#x20;&#x3d; 4<italic>%</italic> <bold>(C)</bold>, <italic>&#x3b2;</italic> &#x3d; 0.66<italic>&#x3c0;</italic> and <italic>r</italic>&#x20;&#x3d; 7.5<italic>%</italic> <bold>(D)</bold>, and <italic>&#x3b2;</italic> &#x3d; 0.66<italic>&#x3c0;</italic> and <italic>r</italic>&#x20;&#x3d; 0<italic>%</italic> <bold>(E)</bold>. Within each layer <italic>&#x3bc;</italic> the nodes are sorted first by <inline-formula id="inf24">
<mml:math id="m28">
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>, then by <inline-formula id="inf25">
<mml:math id="m29">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula>, respectively. Simulation parameters: <italic>N</italic>&#x20;&#x3d; 200, <italic>&#x3b1;</italic> &#x3d; &#x2212; 0.28<italic>&#x3c0;</italic>, <inline-formula id="inf26">
<mml:math id="m30">
<mml:msubsup>
<mml:mrow>
<mml:mi>a</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
</mml:math>
</inline-formula>, <italic>&#x3f5;</italic>
<sup>1</sup> &#x3d; 0.03, <italic>&#x3f5;</italic>
<sup>2</sup> &#x3d; 0.3, <italic>&#x3c3;</italic> &#x3d; 0.3, <italic>&#x3c9;</italic>
<sup>
<italic>h</italic>
</sup> &#x3d; <italic>&#x3c9;</italic>
<sup>2</sup> &#x3d; 0, <italic>&#x3c9;</italic>
<sup>
<italic>p</italic>
</sup> &#x3d; 1. The simulation time is 2000&#x20;time units. For the mean phase velocities the last <italic>T</italic>&#x20;&#x3d; 1,000 time units are taken for&#x20;the&#x20;temporal average, see <xref ref-type="disp-formula" rid="e3">Eq. &#x2009;3</xref>. The mean phase velocities of nodes in layer <italic>&#x3bc;</italic> &#x3d; 1 with <italic>&#x3c9;</italic>
<sup>
<italic>p</italic>
</sup> &#x3d; 1 are marked red. <bold>(C)</bold>, <bold>(D)</bold> show pathological states.</p>
</caption>
<graphic xlink:href="fnetp-01-730385-g002.tif"/>
</fig>
<p>
<xref ref-type="fig" rid="F3">Figure&#x20;3</xref> shows details of these scenario for the same values of age parameter <italic>&#x3b2;</italic> and tumor size <italic>r</italic>. The left and right columns show snapshots of the cytokine matrices <inline-formula id="inf27">
<mml:math id="m31">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> (parenchymal layer) and <inline-formula id="inf28">
<mml:math id="m32">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> (immune layer), respectively. The second column shows snapshots of the instantaneous phases <inline-formula id="inf29">
<mml:math id="m33">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula>, and the third column depicts space-time plots of the phases <inline-formula id="inf30">
<mml:math id="m34">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> visualizing the oscillations. In the healthy state in <xref ref-type="fig" rid="F3">Figures 3A,B</xref> the cytokine matrices are uniform and temporally constant within each cluster. The snapshots of the phases <inline-formula id="inf31">
<mml:math id="m35">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> (second column) and the space-time plots <inline-formula id="inf32">
<mml:math id="m36">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> (third column) show homogeneous in-phase oscillations in the parenchyma and the immune layer, respectively, though with different collective frequencies. In the pathological state in <xref ref-type="fig" rid="F3">Figure&#x20;3C</xref> the small pathological cluster breaks off at <italic>j</italic>&#x20;&#x3d; 193, &#x2026; , 200. For even larger age parameter <italic>&#x3b2;</italic> &#x3d; 0.66<italic>&#x3c0;</italic> and tumor size <italic>r</italic>&#x20;&#x3d; 7.5<italic>%</italic> in <xref ref-type="fig" rid="F3">Figure&#x20;3D</xref> the phase dynamics changes qualitatively. We obtain a pathological two-frequency cluster with strong frequency difference, where the healthy part is no longer in-phase synchronized, but becomes a splay state. With increasing age parameter <italic>&#x3b2;</italic> the frequency difference of the healthy cluster and the tumor cluster becomes larger, i.e.,&#x20;the tumor cells become autonomous. Thus larger age parameter can be associated with less favorable conditions of tumor disease (higher age, higher tumor malignity). A different scenario in dependence on the tumor size <italic>r</italic> with increased age parameter <italic>&#x3b2;</italic> leads from a mixed 2-frequency cluster to a healthy state, where the healthy cluster is a splay state (<xref ref-type="fig" rid="F3">Figure&#x20;3E</xref>). This state is different from the frequency clusters in <xref ref-type="fig" rid="F3">Figures 3A&#x2013;C</xref>, where each frequency cluster is phase synchronized. In <xref ref-type="fig" rid="F3">Figures 3D,E</xref> the frequency of the healthy cluster in the parenchymal layer is fixed equal to that of the immune layer, but the phases of the parenchyma can no longer be kept in-phase, thus a strong overall perturbation of the healthy cluster is visible. The frequency of the pathological cluster is much more strongly separated from that of the healthy cluster. When the tumor size <italic>r</italic> is reduced for low age parameter <italic>&#x3b2;</italic>, below a certain <italic>r</italic> the splay state does no longer occur and the in-phase state is recovered <xref ref-type="fig" rid="F3">Figure&#x20;3A</xref>. In contrast, for high age parameter <italic>&#x3b2;</italic> the splay state occurs even without tumor and multifrequency clustering in a healthy state (see <xref ref-type="fig" rid="F3">Figure&#x20;3E</xref>). The two different pathological scenarios in <xref ref-type="fig" rid="F3">Figures 3C,D</xref>) are connected with different responses of the immune layer and might indicate different malignity of the&#x20;tumor.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Details of dynamical scenarios for healthy states without clusters <bold>(A)</bold>,<bold>(B)</bold>,<bold>(E)</bold> and pathological states with multifrequency clusters <bold>(C)</bold>,<bold>(D)</bold> for different values of <italic>&#x3b2;</italic> and <italic>r</italic> chosen as in <xref ref-type="fig" rid="F2">Figure &#x2009;2</xref>. The left and right columns show snapshots of cytokine matrices <inline-formula id="inf33">
<mml:math id="m37">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> (parenchymal layer) and <inline-formula id="inf34">
<mml:math id="m38">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> (immune layer), respectively (color coded). Second column: snapshots of phases <inline-formula id="inf35">
<mml:math id="m39">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> with the parenchymal nodes labeled <italic>j</italic>&#x20;&#x3d; 1, &#x2026; , 200, and the immune nodes labeled <italic>j</italic>&#x20;&#x3d; 201, &#x2026; , 400. Third column: space-time plot of phases <inline-formula id="inf36">
<mml:math id="m40">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> (color coded). Parameters: <italic>&#x3b2;</italic> &#x3d; 0.45<italic>&#x3c0;</italic> and <italic>r</italic>&#x20;&#x3d; 1<italic>%</italic> <bold>(A)</bold>, <italic>&#x3b2;</italic> &#x3d; 0.55<italic>&#x3c0;</italic> and <italic>r</italic>&#x20;&#x3d; 4<italic>%</italic> <bold>(B)</bold>, <italic>&#x3b2;</italic> &#x3d; 0.60<italic>&#x3c0;</italic> and <italic>r</italic>&#x20;&#x3d; 4<italic>%</italic> <bold>(C)</bold>, <italic>&#x3b2;</italic> &#x3d; 0.66<italic>&#x3c0;</italic> and <italic>r</italic>&#x20;&#x3d; 7.5<italic>%</italic> <bold>(D)</bold>, and <italic>&#x3b2;</italic> &#x3d; 0.66<italic>&#x3c0;</italic> and <italic>r</italic>&#x20;&#x3d; 0<italic>%</italic> <bold>(E)</bold>. Within each layer <italic>&#x3bc;</italic> the nodes are sorted first by <inline-formula id="inf37">
<mml:math id="m41">
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>, then by <inline-formula id="inf38">
<mml:math id="m42">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula>, respectively. Other parameters as in <xref ref-type="fig" rid="F2">Figure &#x2009;2</xref>.</p>
</caption>
<graphic xlink:href="fnetp-01-730385-g003.tif"/>
</fig>
<p>A map of regimes in the parameter plane of (<italic>&#x3b2;</italic>, <italic>r</italic>) is shown in <xref ref-type="fig" rid="F4">Figures 4A,B</xref>, where the ensemble average <italic>s</italic>
<sup>
<italic>&#x3bc;</italic>
</sup> of the standard deviation of the mean phase velocities is plotted for the parenchymal and immune layer, respectively. Bright colors correspond to large deviations of the frequencies (mean phase velocities), and hence to pathological two-cluster states. Their enhancement with increasing age parameter and tumor size can be clearly seen. In <xref ref-type="fig" rid="F4">Figures 4C,D</xref>, a comparison between the ensemble average of the standard deviation and the normalized standard deviation is depicted. In comparison to the standard deviation, the normalized standard deviation shows higher values of the ensemble average <italic>s</italic>
<sup>1</sup> in case of splay states (see <xref ref-type="fig" rid="F4">Figure&#x20;4C</xref> for <italic>&#x3b2;</italic> &#x3e; 0.6<italic>&#x3c0;</italic>). On the contrary, the small bulge of <italic>s</italic>
<sup>1</sup> at <italic>&#x3b2;</italic> &#x3d; 0.5<italic>&#x3c0;</italic> is less pronounced. <xref ref-type="fig" rid="F5">Figure&#x20;5</xref> depicts the comparison between the normalized standard deviation of the parenchymal and immune layer. It clearly shows the strong increase of the frequency deviation in the parenchyma associated with the pathogenicity of the tumor with increasing age parameter, while the much smaller bulge in the immune layer is associated with the immune layer activation before the tumor becomes clearly visible.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Map of regimes: ensemble average <italic>s</italic>
<sup>
<italic>&#x3bc;</italic>
</sup> of the standard deviation of the mean phase velocities in the parameter plane of age parameter <italic>&#x3b2;</italic> and tumor size <italic>r</italic>) (ensemble size is <italic>N</italic>
<sub>
<italic>E</italic>
</sub> &#x3d; 50) for the parenchymal <bold>(A)</bold> and immune layer <bold>(B)</bold>, respectively. Bright colors correspond to the formation of multifrequency clusters. The dynamics&#x20;of the points marked (a)&#x2013;(e) in the upper right panel are shown in <xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F3">3A&#x2013;E</xref>. The lower panels depict the ensemble average <italic>s</italic>
<sup>
<italic>&#x3bc;</italic>
</sup> (blue) in dependence of <italic>&#x3b2;</italic> for a fixed value of <italic>r</italic>&#x20;&#x3d; 7.5<italic>%</italic> for the parenchymal <bold>(C)</bold> and immune layer <bold>(D)</bold>, respectively. The dashed line is a regression curve for an ensemble size of <italic>N</italic>
<sub>
<italic>E</italic>
</sub> &#x3d; 200. For comparison the ensemble average <italic>s</italic>
<sup>
<italic>&#x3bc;</italic>
</sup> of the standard deviation (blue curves) and the normalized standard deviation (red curves) of the spatially averaged mean phase velocities is shown in dependence of <italic>&#x3b2;</italic> for the parenchymal <bold>(C)</bold> and immune layer <bold>(D)</bold>, respectively. Other simulation parameters as in <xref ref-type="fig" rid="F2">Figure &#x2009;2</xref>.</p>
</caption>
<graphic xlink:href="fnetp-01-730385-g004.tif"/>
</fig>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Ensemble average <italic>s</italic>
<sup>
<italic>&#x3bc;</italic>
</sup> of the normalized standard deviation of the mean phase velocities in dependence of <italic>&#x3b2;</italic> for a fixed value of <italic>r</italic>&#x20;&#x3d; 7.5<italic>%</italic> for the parenchymal (solid curve, diamonds) and immune layer (broken curve, dots), respectively for an ensemble size of <italic>N</italic>
<sub>
<italic>E</italic>
</sub> &#x3d; 200. A cubic Savitzky&#x2013;Golay filter has been applied to smooth the curves. Other simulation parameters as in <xref ref-type="fig" rid="F2">Figure &#x2009;2</xref>.</p>
</caption>
<graphic xlink:href="fnetp-01-730385-g005.tif"/>
</fig>
</sec>
<sec id="s5">
<title>5 Sepsis</title>
<p>In our model we focus on the stage of sepsis which is characterized by generalized inflammation. Depending on the individual subject and the local cellular situation of cytokine and fluid influx, either de-escalation of the inflammatory reaction and restoration of homeostasis, or organ failure occurs. Sepsis is usually preceded by a pre-septic perturbation of the parenchyma, e.g., by a wound which is infected by germs. This perturbation is terminated after a while by blocking off the wound by blood coagulation and eventually healing. Under &#x201c;normal&#x201d; conditions, the system returns to a healthy state; however, if sepsis occurs, an inflammatory immune response triggered by the infection spreads across the whole body (cytokine storm). As a consequence, the immune activity may invade large parts of the body through blood vessels and lead to severe organ failure and death. Whether sepsis terminates in a septic shock with severe consequences for the patient depends crucially on the ability of the immune and parenchymal system to regain homeostasis. As in the case of the tumor disease, the ability for returning to a healthy state, i.e.,&#x20;a frequency-synchronized state, is subsequently analyzed using the systemic sum parameter (age parameter) <italic>&#x3b2;</italic>.</p>
<p>For the simulations, we assume that a dysregulation of the cytokine activity in the immune system has already occurred due to a systemic immune response. The dysregulation of the cytokine activity is modeled by an initial perturbation of the cytokine activity matrix <inline-formula id="inf39">
<mml:math id="m43">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> of the immune layer. For the latter, we consider a separation into two clusters with high activity between nodes from the same cluster <inline-formula id="inf40">
<mml:math id="m44">
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> and no activity between nodes from different clusters <inline-formula id="inf41">
<mml:math id="m45">
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>. All other initial conditions are chosen randomly, as in the simulations for tumor disease in <xref ref-type="sec" rid="s4">Section &#x2009;4</xref>. An example initial condition is presented in <xref ref-type="fig" rid="F6">Figure&#x20;6</xref>. Note that we arbitrarily fix the cluster sizes of the initial cytokine activities in the immune layer for the rest of this paper. Furthermore, we increase the value of the interlayer coupling strength <italic>&#x3c3;</italic> compared to our simulations of the tumor disease. This choice is natural in order to understand the mechanism in action during the progression of sepsis. As described in <xref ref-type="sec" rid="s2">Section &#x2009;2</xref>, pro-inflammatory cytokines act on endothelial cells and hence cause an increased blood vessel leakiness. As a result, more immune cells and cytokines enter the stroma which in consequence increases the immune-parenchymal interaction.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>Initial conditions of sepsis: Cytokine dysregulation expressed by a cluster structure of the cytokine activity matrix <inline-formula id="inf42">
<mml:math id="m46">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> imposes a systemic activation of the immune layer representing the beginning of sepsis. The figure shows a sample initial condition used for simulations of <xref ref-type="disp-formula" rid="e1">Eqs. 1</xref>, <xref ref-type="disp-formula" rid="e2">2</xref> with <italic>N</italic>&#x20;&#x3d; 200. The initial cytokine activities in the parenchymal layer <inline-formula id="inf43">
<mml:math id="m47">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> and the&#x20;initial phases in both layers are randomly drawn from a uniform distribution on the interval [&#x2212;1, 1] and the interval [0, 2<italic>&#x3c0;</italic>], respectively. The cytokine activities in the immune layer <inline-formula id="inf44">
<mml:math id="m48">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> are initially given by a two-cluster structure where the smallest cluster has size 40. The cytokine activities <inline-formula id="inf45">
<mml:math id="m49">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> are 1 within and 0 between the clusters.</p>
</caption>
<graphic xlink:href="fnetp-01-730385-g006.tif"/>
</fig>
<p>In the following, we present simulation results for different choices of the age parameter <italic>&#x3b2;</italic> showing that after an initial cytokine perturbation in the immune layer either the healthy frequency-synchronized state is restored, or the whole system goes to a desynchronized or multifrequency cluster&#x20;state.</p>
<p>
<xref ref-type="fig" rid="F7">Figure&#x20;7</xref> shows five representative dynamical scenarios that are induced by pathological initial cytokine activity in the immune layer. For an age parameter <italic>&#x3b2;</italic> &#x3d; 0.5<italic>&#x3c0;</italic> in <xref ref-type="fig" rid="F7">Figure&#x20;7A</xref>, we observe that the system relaxes to a healthy state, i.e.,&#x20;frequency synchronized state, after an initial immune layer perturbation. Hence, the pro-inflammatory response is stopped. A transient of 1,000&#x20;time units is discarded before the temporal average over <italic>T</italic>&#x20;&#x3d; 1,000 is taken in the mean phase velocities <inline-formula id="inf46">
<mml:math id="m50">
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>. In addition, <xref ref-type="fig" rid="F8">Figure&#x20;8A</xref> shows that in the final state the phases in both layers are in-phase synchronized representing a resilient healthy state. The same scenario can be observed as well for an increased value of the age parameter <italic>&#x3b2;</italic> &#x3d; 0.6<italic>&#x3c0;</italic> in <xref ref-type="fig" rid="F7">Figures 7B</xref>, <xref ref-type="fig" rid="F8">8B</xref>. While for <italic>&#x3b2;</italic> &#x3d; 0.5<italic>&#x3c0;</italic> it is unlikely to obtain a pathological state, i.e.,&#x20;a desynchronized state, from any random initial conditions of <inline-formula id="inf47">
<mml:math id="m51">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> and the phases <inline-formula id="inf48">
<mml:math id="m52">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula>, the probability of a pathological state for an ensemble of random initial conditions <inline-formula id="inf49">
<mml:math id="m53">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mn>0</mml:mn>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf50">
<mml:math id="m54">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mn>0</mml:mn>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> increases for <italic>&#x3b2;</italic> &#x3d; 0.6<italic>&#x3c0;</italic>. In <xref ref-type="fig" rid="F7">Figures 7C</xref>, <xref ref-type="fig" rid="F8">8C</xref>, we depict a dynamical scenario where the initial immune layer perturbation induces a desynchronization of the parenchymal layer. We clearly observe the presence of a two-frequency cluster. In this situation, the initial activated immune response can not be compensated by the coupled system and pushes the parenchyma away from a homeostatic state that may have severe consequences for the organic tissue, compare with the discussion for tumor disease in <xref ref-type="sec" rid="s4">Section &#x2009;4</xref>. For even higher values of the age parameter <italic>&#x3b2;</italic> &#x3d; 0.7<italic>&#x3c0;</italic> the probability of desynchronization increases. Depending upon the random initial conditions of <inline-formula id="inf51">
<mml:math id="m55">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> and the phases <inline-formula id="inf52">
<mml:math id="m56">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula>, also for this value of <italic>&#x3b2;</italic>, we may obtain a frequency-synchronized (healthy) or a desynchronized (pathological) state. In <xref ref-type="fig" rid="F7">Figures 7D</xref>, <xref ref-type="fig" rid="F8">8D</xref>, we display a frequency-synchronized state for <italic>&#x3b2;</italic> &#x3d; 0.7<italic>&#x3c0;</italic>. However, this particular state is not in-phase synchronized any more, as it is the case for the healthy states in <xref ref-type="fig" rid="F8">Figures 8A,B</xref>. <xref ref-type="fig" rid="F8">Figure&#x20;8D</xref> shows this state which possesses a splay distribution of the phases. Splay distributions of the phases may be interpreted as more vulnerable and less resilient against further perturbations by pathological cells in the parenchymal layer or a &#x201c;second hit&#x201d; phenomena known for sepsis. The more likely dynamical scenario of an emergent pathological two-frequency cluster for the same value of <italic>&#x3b2;</italic> &#x3d; 0.7<italic>&#x3c0;</italic> is displayed in <xref ref-type="fig" rid="F7">Figures 7E</xref>,&#x20;<xref ref-type="fig" rid="F8">8E</xref>.</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>Dynamical scenarios for healthy states without clusters and pathological states with multifrequency clusters for different values of <italic>&#x3b2;</italic>. The left panels show the absolute differences of the mean phase velocities <inline-formula id="inf53">
<mml:math id="m57">
<mml:mi mathvariant="normal">&#x394;</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:mo stretchy="false">&#x7c;</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>/</mml:mo>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>1</mml:mi>
<mml:mi>0</mml:mi>
<mml:mi>0</mml:mi>
<mml:mo>/</mml:mo>
<mml:mi>3</mml:mi>
<mml:mi>0</mml:mi>
<mml:mi>0</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>/</mml:mo>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
<mml:mo stretchy="false">&#x7c;</mml:mo>
</mml:math>
</inline-formula>. The right panels show mean phase velocities <inline-formula id="inf54">
<mml:math id="m58">
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>. The parenchymal nodes are labeled by <italic>j</italic>&#x20;&#x3d; 1, &#x2026; , 200, and the immune nodes by <italic>j</italic>&#x20;&#x3d; 201, &#x2026; , 400. The age parameter is <italic>&#x3b2;</italic> &#x3d; 0.5<italic>&#x3c0;</italic> <bold>(A)</bold>, <italic>&#x3b2;</italic> &#x3d; 0.6<italic>&#x3c0;</italic> <bold>(B)</bold>, <italic>&#x3b2;</italic> &#x3d; 0.6<italic>&#x3c0;</italic> <bold>(C)</bold>, <italic>&#x3b2;</italic> &#x3d; 0.7<italic>&#x3c0;</italic> <bold>(D)</bold> and <italic>&#x3b2;</italic> &#x3d; 0.7<italic>&#x3c0;</italic> <bold>(E)</bold>, where panels <bold>(B)</bold> and <bold>(C)</bold>, and panels <bold>(D)</bold> and <bold>(E)</bold>, respectively, only differ in the random initial conditions <inline-formula id="inf55">
<mml:math id="m59">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mn>0</mml:mn>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula id="inf56">
<mml:math id="m60">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mn>0</mml:mn>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>. Within each layer <italic>&#x3bc;</italic> the nodes are sorted first by <inline-formula id="inf57">
<mml:math id="m61">
<mml:mrow>
<mml:mo stretchy="false">&#x27e8;</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mo>&#x307;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">&#x27e9;</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>, then by <inline-formula id="inf58">
<mml:math id="m62">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula>. Simulation parameters: <italic>&#x3c3;</italic> &#x3d; 1, <italic>&#x3c9;</italic>
<sup>1</sup> &#x3d; <italic>&#x3c9;</italic>
<sup>2</sup> &#x3d; 0. Other parameters as in <xref ref-type="fig" rid="F2">Figure &#x2009;2</xref> and the initial conditions as in <xref ref-type="fig" rid="F6">Figure&#x20;6</xref>.</p>
</caption>
<graphic xlink:href="fnetp-01-730385-g007.tif"/>
</fig>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption>
<p>Details of dynamical scenarios for healthy states without clusters <bold>(A)</bold>,<bold>(B)</bold>,<bold>(D)</bold> and pathological states with multifrequency clusters <bold>(C)</bold>,<bold>(E)</bold> for different values of <italic>&#x3b2;</italic> chosen as in <xref ref-type="fig" rid="F7">Figure&#x20;7</xref>. The left and right columns show snapshots of cytokine activity matrices <inline-formula id="inf59">
<mml:math id="m63">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> (parenchymal layer) and <inline-formula id="inf60">
<mml:math id="m64">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> (immune layer), respectively (color coded). Second column: snapshots of phases <inline-formula id="inf61">
<mml:math id="m65">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:math>
</inline-formula> with the parenchymal nodes labeled <italic>j</italic>&#x20;&#x3d; 1, &#x2026; , 200, and the immune nodes labeled <italic>j</italic>&#x20;&#x3d; 201, &#x2026; , 400. Third column: space-time plot of phases <inline-formula id="inf62">
<mml:math id="m66">
<mml:msubsup>
<mml:mrow>
<mml:mi>&#x3d5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>j</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bc;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula> (color coded). The parameters <italic>&#x3b2;</italic> and all other parameters are chosen as in <xref ref-type="fig" rid="F7">Figure&#x20;7</xref>.</p>
</caption>
<graphic xlink:href="fnetp-01-730385-g008.tif"/>
</fig>
<p>For all presented scenarios in <xref ref-type="fig" rid="F7">Figures 7</xref>, <xref ref-type="fig" rid="F8">8</xref>, we note that the frequencies of the parenchymal and the immune layer are locked. The emergence of the dynamical phenomenon of locking <xref ref-type="bibr" rid="B91">Pikovsky et&#x20;al. (2001)</xref> can be explained by the increased value of the interlayer coupling strength <italic>&#x3c3;</italic> compared to the simulation of the tumor disease, see <xref ref-type="sec" rid="s4">Section &#x2009;4</xref>. Locking can be interpreted as the dynamical manifestation of the physiological observation that the immune system is taking control of the whole system in case of sepsis. For smaller interlayer coupling strength this locking cannot be observed, and hence desynchronization induced by a pathologically activated immune system is not possible.</p>
<p>The dynamical scenarios discussed in this section are very similar to the observations presented for tumor disease. Additionally, in agreement with the results found for tumor disease, the desynchronization of the parenchymal layer due to an initially activated immune layer is observed for higher age parameter <italic>&#x3b2;</italic> with increasing probability. We note that also here resilient and vulnerable healthy states may coexist with pathological desynchronized states. The increased desynchronization probability with increasing <italic>&#x3b2;</italic> is reflected in the increasing ensemble average of the normalized standard deviation of the mean phase velocities in <xref ref-type="fig" rid="F9">Figure&#x20;9</xref>.</p>
<fig id="F9" position="float">
<label>FIGURE 9</label>
<caption>
<p>Ensemble average <italic>s</italic>
<sup>
<italic>&#x3bc;</italic>
</sup> of the normalized standard deviation of the mean phase velocities in dependence of <italic>&#x3b2;</italic> for a fixed value of <italic>&#x3c3;</italic> &#x3d; 1 for the parenchymal and immune layer (both curves coincide) for an ensemble size of <italic>N</italic>
<sub>
<italic>E</italic>
</sub> &#x3d; 200. A cubic Savitzky-Golay filter has been applied to smooth the curve. Other simulation parameters as in <xref ref-type="fig" rid="F7">Figure&#x20;7</xref>.</p>
</caption>
<graphic xlink:href="fnetp-01-730385-g009.tif"/>
</fig>
</sec>
<sec id="s6">
<title>6 Conclusion</title>
<p>In this article, we have proposed a two-layer network model for carcinogenesis and sepsis based upon the interaction of parenchymal cells and immune cells via cytokines and the co-evolutionary dynamics of parenchymal, immune cells and cytokines. Certain parallels between cancer and infectious disease have been unveiled in the medical sciences, however, little is understood about the underlying mechanism behind these very similar pathological states induced by tumor and sepsis, respectively <xref ref-type="bibr" rid="B53">Hotchkiss and Moldawer (2014)</xref>. With this study, we propose a novel paradigm of unified functional modeling of tumor disease and sepsis from the complex dynamical network perspective by choosing the nonspecific innate immune system&#x20;as the reference point for both diseases. The proposed model is not a detailed model of organs but a functional model of dynamic interactions. Here, cytokine activity is described as information flow within and between the parenchymal and the immune layer. In particular, the communication between cells of the parenchyma, and between cells of the immune layer is modeled by adaptive coupling weights. This approach is complementary to works modeling the cytokine concentrations as additional dynamical species <xref ref-type="bibr" rid="B122">Yiu et&#x20;al. (2012)</xref>. Thus our perspective accounts for the cytokine activation rather than their physical&#x20;mass.</p>
<p>In this paper we have presented the simplest form of a two-layer network model based upon adaptively coupled phase oscillators. Although many simplifying assumptions have been made, this model can already capture essential unifying features of tumor disease and sepsis. Two important tunable model parameters have been identified, i.e.,&#x20;the tumor size <italic>r</italic> denoting the fraction of mutant (pathological) parenchymal cells which have a deviating natural frequency of single-cell basic metabolic activity, and an adaptivity parameter <italic>&#x3b2;</italic> (called age parameter) summarizing various physiological conditions like age, inflammaging, adiposity, pre-existing illness, physical inactivity, nutritional influence, and malignancy in case of tumor disease. The healthy system is modeled as a completely frequency-synchronized homeostatic state of metabolic activity in both the parenchyma and the immune layer, while in the pathological case the parenchyma splits into two frequency clusters with different collective frequency, one corresponding to the healthy part, and one corresponding to organ failure. The desynchronization of the parenchymal layer is observed for higher age parameter <italic>&#x3b2;</italic> with increasing probability both in case of tumor disease and sepsis.</p>
<p>To characterize the dynamical patterns resulting from this model, we have introduced the temporally averaged mean phase velocities of the cells as collective frequencies of metabolism, and their ensemble-averaged standard deviation <italic>s</italic>
<sup>
<italic>&#x3bc;</italic>
</sup> as a measure of pathogenicity in case of the parenchymal layer (<italic>&#x3bc;</italic> &#x3d; 1), and as a measure of metabolic activation in case of the immune layer (<italic>&#x3bc;</italic> &#x3d; 2). Thus <italic>s</italic>
<sup>1</sup> &#x2260; 0 is an immediate indicator of a pathological state. Further, we have discussed the initial perturbation for both types of pathological conditions, i.e.,&#x20;tumor and sepsis. For the analysis of the tumor disease, we assume heterogeneity in the natural frequency distribution of the parenchymal layer to account for the fact that mutated parenchymal cells may possess a faster metabolism than healthy parenchymal cells. For sepsis, we consider, however, a homogeneous network of oscillator with an initially activated cytokine matrix representing a systemic immune response. Moreover, for sepsis, we assume a high coupling strength between the parenchymal and the immune layer caused by the pro-inflammatory immune response.</p>
<p>In case of tumor disease, our simulations show that for small values of the age parameter <italic>&#x3b2;</italic>, as representative for young and healthy subjects, almost all simulations lead to a healthy state even for a relatively high fraction <italic>r</italic> of mutated cells. Thus the system is robust against random mutations of parenchymal cells. For increasing age parameter, the immune layer turns out to be more activated in order to keep the parenchymal layer synchronized. Here, only for a low fraction of mutated cells <italic>r</italic> the healthy state can be maintained. For higher values of the fraction <italic>r</italic> the immune layer is not able anymore to keep the parenchyma synchronized, and a pathological desynchronized state emerges. For high values of the age parameter the immune layer is completely dysregulated, and a severe pathological state of tumor disease is almost inevitable. One might speculate that in the in-phase scenario the pathological cluster (tumor) may be removed (by surgery) so that the healthy state is restored, whereas in the splay scenario the non-tumor cluster is already so strongly perturbed that removal of the tumor may not bring the system back to the healthy&#x20;state.</p>
<p>In analogy with the study of tumor disease, we have demonstrated various dynamical scenarios for different age parameters in case of sepsis. Also here, the age parameter <italic>&#x3b2;</italic> has been shown to be critical for the system to return to the healthy state. For specifically chosen parameter values, close to those chosen for the examples of tumor disease, we have visualized the emergence of different synchronized and desynchronized states. Furthermore, we have found parameter regimes for which healthy states may coexist with pathological desynchronized states, i.e.,&#x20;it depends upon the random initial conditions which of the two states is asymptotically reached. Further systematic studies should investigate the detailed dependence upon the initial perturbation of the cytokin activity matrix in the immune layer, i.e.,&#x20;the initial cluster and its size, and upon the choice of the interlayer coupling strength. We hypothesize that the interlayer coupling strength <italic>&#x3c3;</italic> may be used to model functionally the progression of sepsis where an increased <italic>&#x3c3;</italic> may be interpreted as an ongoing in-stream of cytokines from the blood vessels into the stroma. For both tumor disease and sepsis our model represents only a first step towards more detailed and systematic investigations.</p>
<p>In summary, a unified disease model has been established using the innate immune system as the reference point. Diseases such as tumorigenesis and sepsis have been modeled by studying the dynamic functional interactions between parenchyma and stroma. For this purpose, a unified system of dynamic equations has been developed, in which only three different parameters, the age parameter, the number of mutated cells, and the initial cytokine activation are varied. Thereby, carcinogenesis, organ dysfunction in sepsis, and recurrence risk can be described in a correct functional context. Our studies open a perspective for further dynamic disease modeling. For instance, more detailed models, including disease progression may be developed in future studies.</p>
</sec>
</body>
<back>
<sec id="s7">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s8">
<title>Author Contributions</title>
<p>JS and RB performed the numerical simulations and analyzed the simulated data. The idea of unified treatment of tumor disease and sepsis was due to TL. The idea of an adaptive two-layer network model where the cytokine activity is associated with adaptive coupling weights was due to ES. All authors designed the study and contributed to the preparation of the article. All the authors have read and approved the final article.</p>
</sec>
<sec id="s9">
<title>Funding</title>
<p>This work was supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation, project Nos. 429685422 and 440145547) and the Open Access Publication Fund of TU Berlin.</p>
</sec>
<sec sec-type="COI-statement" id="s10">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s11">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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