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<journal-id journal-id-type="publisher-id">Front. Mol. Med.</journal-id>
<journal-title>Frontiers in Molecular Medicine</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mol. Med.</abbrev-journal-title>
<issn pub-type="epub">2674-0095</issn>
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<publisher-name>Frontiers Media S.A.</publisher-name>
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<article-id pub-id-type="publisher-id">1599785</article-id>
<article-id pub-id-type="doi">10.3389/fmmed.2025.1599785</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Molecular Medicine</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The role of aryl hydrocarbon receptor signalling in COVID-19 pathology and its therapeutic potential</article-title>
<alt-title alt-title-type="left-running-head">Mbambara et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmmed.2025.1599785">10.3389/fmmed.2025.1599785</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Mbambara</surname>
<given-names>Saidon</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2843392/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Modipane</surname>
<given-names>Ndimo</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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<contrib contrib-type="author">
<name>
<surname>Serite</surname>
<given-names>Thato</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
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<contrib contrib-type="author">
<name>
<surname>Sathekge</surname>
<given-names>Mike</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
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<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
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<contrib contrib-type="author" corresp="yes">
<name>
<surname>Kgatle</surname>
<given-names>Mankgopo</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
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<aff id="aff1">
<sup>1</sup>
<institution>Department of Nuclear Medicine, University of Pretoria and Steve Biko Academic Hospital</institution>, <addr-line>Pretoria</addr-line>, <country>South Africa</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Nuclear Medicine Research Infrastructure (NuMeRI), Department of Basic and Translational Research, Steve Biko Academic Hospital</institution>, <addr-line>Pretoria</addr-line>, <country>South Africa</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Department of Biomedical Sciences, Tropical Diseases Research Centre</institution>, <addr-line>Ndola</addr-line>, <country>Zambia</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Department of Medicine, University of Cape Town and Groote Schuur Hospital, Observatory</institution>, <addr-line>Cape Town</addr-line>, <country>South Africa</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1968472/overview">Koro Gotoh</ext-link>, Oita University, Japan</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2092196/overview">Amit Chougule</ext-link>, University of Michigan, United States</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/3001141/overview">Malvika Chawla</ext-link>, Academic Editing, India</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Mankgopo Kgatle, <email>kgatle.mankgopo@gmail.com</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>29</day>
<month>08</month>
<year>2025</year>
</pub-date>
<pub-date pub-type="collection">
<year>2025</year>
</pub-date>
<volume>5</volume>
<elocation-id>1599785</elocation-id>
<history>
<date date-type="received">
<day>25</day>
<month>03</month>
<year>2025</year>
</date>
<date date-type="accepted">
<day>04</day>
<month>08</month>
<year>2025</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2025 Mbambara, Modipane, Serite, Sathekge and Kgatle.</copyright-statement>
<copyright-year>2025</copyright-year>
<copyright-holder>Mbambara, Modipane, Serite, Sathekge and Kgatle</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Coronavirus disease 2019 (COVID-19), caused by the <italic>betacoronavirus</italic> SARS-CoV-2, emerged in Wuhan, China, and rapidly evolved into a global health crisis. Recent evidence highlights the activation of the aryl hydrocarbon receptor (AHR) pathway following SARS-CoV-2 infection, implicating AHR in facilitating viral replication and impairing antiviral immunity. As a ligand-dependent transcription factor, AHR regulates immune responses, cellular differentiation, and proliferation, and is frequently exploited by viruses to evade host defences. In relation to COVID-19, AHR activation drives immune suppression, systemic inflammation, and metabolic disturbances, intensifying disease severity. Notably, in individuals with comorbidities such as obesity and diabetes, AHR overactivity exacerbates insulin resistance, oxidative stress, endothelial dysfunction, and thrombotic risk, contributing to cardiovascular complications. AHR also promotes airway remodelling and mucus hypersecretion, fostering respiratory dysfunction and fibrotic progression. This review synthesizes current insights into the mechanistic role of AHR signalling in SARS-CoV-2 pathogenesis and discusses its potential as a target for host-directed therapeutic interventions.</p>
</abstract>
<kwd-group>
<kwd>aryl hydrocarbon receptor</kwd>
<kwd>COVID-19</kwd>
<kwd>SARS-CoV-2</kwd>
<kwd>comorbidities</kwd>
<kwd>diabetes</kwd>
<kwd>hypertension</kwd>
<kwd>inflammation</kwd>
<kwd>metabolic disorders</kwd>
</kwd-group>
<counts>
<page-count count="12"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Molecular Pathology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Coronavirus disease 2019 (COVID-19) is an acute respiratory illness caused by severe acute respiratory syndrome coronavirus &#x2212;2 (SARS-CoV-2), which first emerged in Wuhan, China, in December 2019 (<xref ref-type="bibr" rid="B83">Tang et al., 2020</xref>). SARS-CoV-2 is a positive-sense, single-stranded RNA virus belonging to the <italic>betacoronavirus</italic> genus within the <italic>Coronaviridae</italic> family (<xref ref-type="bibr" rid="B41">Hu et al., 2023</xref>). Transmission among humans primarily occurs via respiratory droplets and aerosols, with viral particles capable of persisting for hours to days depending on environmental conditions (<xref ref-type="bibr" rid="B1">Al et al., 2020</xref>; <xref ref-type="bibr" rid="B18">Brodin, 2021</xref>). Entry of the virus into host cells is mediated through the angiotensin-converting enzyme 2 (ACE2) receptor, highly expressed on alveolar epithelial cells and variably present in tissues such as the oral mucosa, myocardium, kidneys, and liver. The pathogenesis of COVID-19 is characterized by dysregulated immune responses including cytokine storm, chemokine overproduction, and leukocyte influx, which drive multi-organ involvement and disease severity (<xref ref-type="bibr" rid="B83">Tang et al., 2020</xref>; <xref ref-type="bibr" rid="B1">Al et al., 2020</xref>; <xref ref-type="bibr" rid="B18">Brodin, 2021</xref>; <xref ref-type="bibr" rid="B46">Kgatle et al., 2021</xref>; <xref ref-type="bibr" rid="B63">Rejano-Gordillo et al., 2022</xref>).</p>
<p>Recent studies have implicated the aryl hydrocarbon receptor (AHR), a ligand-activated transcription factor, as a critical modulator in SARS-CoV-2 infection. AHR has historically been recognized for its role in xenobiotic metabolism, but growing evidence supports its broader function in immunoregulation, cellular differentiation, and inflammatory signalling (<xref ref-type="bibr" rid="B63">Rejano-Gordillo et al., 2022</xref>). Viral pathogens such as Zika virus (ZIKV) and Dengue virus (DENV) exploit AHR signalling to enhance replication and evade host defences, and emerging data suggest a similar mechanism in SARS-CoV-2 infection (<xref ref-type="bibr" rid="B41">Hu et al., 2023</xref>; <xref ref-type="bibr" rid="B33">Giovannoni et al., 2021</xref>; <xref ref-type="bibr" rid="B74">Shi et al., 2023</xref>).</p>
<p>Notably, SARS-CoV-2 activates AHR through an indoleamine 2,3-dioxygenase 1 (IDO1)-independent pathway that bypasses kynurenine accumulation. This leads to transcriptional upregulation of downstream effectors such as TiPARP, IL-10, IL-1&#x3b2;, and tumour necrosis factor-alpha (TNF-&#x3b1;), key contributors to immune dysregulation and inflammation (<xref ref-type="bibr" rid="B52">Mazari et al., 2025</xref>; <xref ref-type="bibr" rid="B31">Giovannoni and Quintana, 2021</xref>; <xref ref-type="bibr" rid="B86">Turski et al., 2020</xref>). In COVID-19, AHR activation has been associated with impaired interferon signalling, altered ACE2 expression, and sustained viral proliferation (<xref ref-type="bibr" rid="B74">Shi et al., 2023</xref>).</p>
<p>Beyond its immunological role, AHR influences gene expression via epigenetic modifications including chromatin remodelling, microRNA regulation, histone acetylation, and DNA methylation (<xref ref-type="bibr" rid="B66">Rothhammer and Quintana, 2019</xref>; <xref ref-type="bibr" rid="B67">S et al., 2014</xref>). These mechanisms collectively shape immune responses and contribute to disease progression (<xref ref-type="bibr" rid="B19">Cannon et al., 2021</xref>). In individuals with comorbidities such as obesity and diabetes, AHR overactivation further exacerbates metabolic dysfunction, endothelial injury, and thrombotic risk.</p>
<p>Emerging SARS-CoV-2 variants of concern (VOCs), such as LP.8.1 and XEC, continue to undermine vaccine efficacy and challenge existing therapeutic strategies. Despite genetic divergence, these variants consistently exploit the AHR signalling pathway to support viral replication and immune evasion, indicating that AHR plays a conserved role across variant lineages. The structural integrity of key AHR domains, including PAS-B and transactivation regions, further supports its relevance as a stable target for host-directed therapy (<xref ref-type="bibr" rid="B81">Del Sorbo et al., 2025</xref>; <xref ref-type="bibr" rid="B51">Mambelli et al., 2025</xref>; <xref ref-type="bibr" rid="B65">Roederer et al., 2024</xref>). While current vaccines do not directly modulate AHR activation, they may influence AHR-related pathways indirectly by tempering systemic inflammation and reducing cytokine overload, which are known contributors to AHR signalling. Importantly, AHR activation patterns appear consistent across variants, suggesting that its therapeutic targeting remains viable irrespective of mutational changes in the virus. In relation to 2025s landscape of variant-driven immune escape, AHR modulation offers a complementary approach to enhance immune control and reduce disease severity, particularly in individuals with reduced vaccine responsiveness or comorbid conditions.</p>
<p>The significance of this review lies in its timely focus on AHR as a multifaceted regulator of disease severity, particularly in individuals with underlying metabolic and inflammatory comorbidities. With the rise of immune-evasive variants and limited efficacy of conventional therapies in certain populations, understanding AHR-driven pathways offers a strategic entry point for host-targeted interventions. By elucidating the molecular mechanisms of AHR activation in SARS-CoV-2 infection, this review builds a compelling case for therapeutic modulation of AHR as a precision medicine approach against COVID-19.</p>
</sec>
<sec id="s2">
<title>Structural components and signalling of AHR</title>
<p>AHR belongs to the basic helix-loop-helix (bHLH)/PER-ARNT-SIM (PAS) superfamily of proteins (<xref ref-type="bibr" rid="B63">Rejano-Gordillo et al., 2022</xref>). It features a bHLH domain near the N-terminal, which aids in binding AHR to the promoter regions of targeted genes and supports protein dimerization (<xref ref-type="bibr" rid="B41">Hu et al., 2023</xref>; <xref ref-type="bibr" rid="B12">Biagioli et al., 2021</xref>; <xref ref-type="bibr" rid="B35">Guarnieri, 2022</xref>). The PAS domain provides structural integrity and ligand binding, facilitating interactions with the aryl hydrocarbon nuclear translocator (ARNT) and other ligands (<xref ref-type="bibr" rid="B86">Turski et al., 2020</xref>; <xref ref-type="bibr" rid="B56">Nebert, 2017</xref>). AHR targets genes through consensus regions known as aryl hydrocarbon response elements (AHRE) and dioxin/xenobiotic response elements (DRE/XRE) (<xref ref-type="bibr" rid="B56">Nebert, 2017</xref>; <xref ref-type="bibr" rid="B26">Dong and Perdew, 2020</xref>). The C-terminal region contains the transactivation domain, which interacts with co-activators or co-repressors to regulate transcription (<xref ref-type="bibr" rid="B86">Turski et al., 2020</xref>; <xref ref-type="bibr" rid="B56">Nebert, 2017</xref>; <xref ref-type="bibr" rid="B26">Dong and Perdew, 2020</xref>; <xref ref-type="bibr" rid="B90">Xue et al., 2018</xref>) (<xref ref-type="fig" rid="F1">Figure 1</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>
<bold>(A)</bold> The structure of the AHR. An amine N terminal, a bHLH, and a central PAS domain with two repeats for ligand binding: PAS-A and PAS-B are highlighted. Near the C terminal end, there is a transactivation domain (TAD). The bHLH enhances AHR&#x2019;s binding to the promoter regions in the DNA of its target genes, while the PAS-B domain is involved in ligand binding to AHR. <bold>(B)</bold> In comparison, the structure of ARNT contains a bHLH that binds to the promoter sequence in the DNA of its target genes. However, the PAS-B domain in ARNT does not bind any ligands.</p>
</caption>
<graphic xlink:href="fmmed-05-1599785-g001.tif">
<alt-text content-type="machine-generated">Diagram comparing two protein structures labeled A and B. Both include N-terminal and C-terminal ends. Structure A consists of bHLH, PAS-A, PAS-B, and Transactivation Binding Domain with colors purple, green, yellow, and blue respectively. Structure B has similar regions but is colored light blue, pink, blue, and red. Both indicate DNA binding and Dimerization Domains overlapping bHLH and PAS-A, and a Ligand Binding Domain within PAS-B.</alt-text>
</graphic>
</fig>
<p>AHR regulates various physiological processes, including immune responses, metabolism, and cellular differentiation. AHR activation is influenced by a wide range of ligands, with exogenous ligands often causing toxicological effects, while endogenous ligands maintain physiological balance and regulate immune functions (<xref ref-type="bibr" rid="B56">Nebert, 2017</xref>; <xref ref-type="bibr" rid="B11">Barturen et al., 2022</xref>; <xref ref-type="bibr" rid="B17">Bradic et al., 2022</xref>). Exogenous ligands, such as environmental contaminants like polycyclic aromatic hydrocarbons (PAHs) and halogenated aromatic hydrocarbons (HAHs), as well as dietary compounds like curcumin, indigo, and indirubin, can activate AHR, often leading to toxic effects such as immunotoxicity, cardiotoxicity, and hepatotoxicity (<xref ref-type="bibr" rid="B5">Ashida et al., 2008</xref>). These effects arise from AHR activation by xenobiotics, resulting in the expression of cytokines and chemokines that disrupt normal immune cell function.</p>
<p>Endogenous ligands, naturally occurring within the body, include tryptophan (TRP) metabolites like kynurenine (KYN) and kynurenic acid (KYNA), indigo and indirubin, and 6-formylindolo (3,2-b)carbazole (FICZ) (<xref ref-type="bibr" rid="B56">Nebert, 2017</xref>). These endogenous ligands play crucial roles in maintaining normal cellular functions, including immune responses and cellular differentiation (<xref ref-type="bibr" rid="B56">Nebert, 2017</xref>; <xref ref-type="bibr" rid="B9">Balnis et al., 2023</xref>; <xref ref-type="bibr" rid="B48">Konigsberg et al., 2021</xref>). For example, AHR activation by FICZ promotes the development of T helper 17 (Th17) cells, which are involved in inflammatory responses (<xref ref-type="bibr" rid="B79">Sl&#xe1;dekov&#xe1; et al., 2023</xref>). KYN, a significant endogenous ligand for AHR, plays a crucial role in SARS-CoV-2-induced AHR activation. It is produced through the initial and rate-limiting step of the KYN pathway, the primary route for tryptophan catabolism in the body, leading to various immunomodulatory effects.</p>
<p>With the emergence of the COVID-19 pandemic, studies suggest that AHR activation may contribute pro-inflammatory responses, potentially exacerbating cytokine storm in SARS-CoV-2 infection (<xref ref-type="bibr" rid="B17">Bradic et al., 2022</xref>; <xref ref-type="bibr" rid="B85">Torti et al., 2021</xref>). This activation could explain alteration in tumor necrosis factors (TNFs), interferons (IFNs), interleukin (ILs), chemokines, and acute-phase proteins such as ferritin, D-dimer, transaminase, bilirubin and C-reactive protein (CRP) (<xref ref-type="bibr" rid="B81">Del Sorbo et al., 2025</xref>). Elevated levels of IL-1&#x3b2;, IL-6, IL-8 and TNF-&#x3b1; induced by AHR and indoleamine-2,3-dioxygenase 1 (IDO1) may lead to extensive tissue damage and severe disease progression (<xref ref-type="bibr" rid="B48">Konigsberg et al., 2021</xref>; <xref ref-type="bibr" rid="B88">Xiao and Vermund, 2024</xref>).</p>
<p>Under basal conditions, AHR is sequestered in the cytoplasm, stabilized by a chaperone complex comprising heat shock protein 90 (HSP90), co-chaperone p23 and hepatitis b virus X associated protein 2 (XAP2) (<xref ref-type="bibr" rid="B79">Sl&#xe1;dekov&#xe1; et al., 2023</xref>). This complex preserves receptor conformation and prevents premature degradation. Canonical activation is initiated when specific ligands bind AHR, inducing a conformational change that exposes its nuclear localization signal (NLS), as described in <xref ref-type="fig" rid="F2">Figure 2</xref>. This enables AHR&#x2019;s translocation into the nucleus, where it dimerizes with ARNT to form the functional AHR/ARNT complex (<xref ref-type="fig" rid="F3">Figure 3</xref>). This complex binds xenobiotic response elements (XREs) on target gene promoters, regulating transcription of immunomodulatory and metabolic genes such as <italic>CYP1A1</italic>, <italic>CYP1A2</italic>, and <italic>CYP1B1</italic>, which metabolize AHR ligands and facilitate signal termination (<xref ref-type="bibr" rid="B79">Sl&#xe1;dekov&#xe1; et al., 2023</xref>; <xref ref-type="bibr" rid="B85">Torti et al., 2021</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Overview of Canonical vs Non-Canonical AHR Signalling Pathways. The figure compares AHR activation via canonical and non-canonical signalling. In the canonical pathway, ligand-bound AHR translocates to the nucleus, dimerizes with ARNT, and regulates target gene transcription through XRE binding. The non-canonical pathway involves AHR activation by diverse ligands, initiating secondary signalling cascades (e.g., MAPK, calcium-mediated PKC&#x3b1;) and modulating gene expression via interactions with transcription factors beyond XRE targets.</p>
</caption>
<graphic xlink:href="fmmed-05-1599785-g002.tif">
<alt-text content-type="machine-generated">Diagram illustrating non-canonical and canonical signaling pathways. On the left, the non-canonical pathway features cytoplasmic interactions activating proteins like MAPK and FAK, influencing prostaglandin production and adhesion. The canonical pathway, on the right, shows ligand binding leading to calcium ion movement, arachidonic acid release, and DNA transcription regulation, involving proteins AHR, ARNT, and AHRR. Proteins like HSP90 and P23 facilitate these processes, concluding with proteasomal degradation or transcription repression.</alt-text>
</graphic>
</fig>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Infection with SARS-CoV-2 triggers the activation of AHR. Once activated, AHR translocates to the nucleus, where it forms a heterodimer with ARNT and binds to the promoter region of its target genes. Epigenetic regulation of AHR, particularly through DNA methylation catalyzed by DNMTs, can lead to the upregulation of genes (e.g. Peg10 and ECE1) involved in innate immune and inflammatory responses. AHR&#x2019;s epigenetic regulation can also inhibit transcription and reduce the expression of genes involved in the transcription process.</p>
</caption>
<graphic xlink:href="fmmed-05-1599785-g003.tif">
<alt-text content-type="machine-generated">Flowchart showing the effects of SARS-CoV-2 on AHR activation. Steps: (1) SARS-CoV-2 infection induces AHR activation. (2) Activated AHR translocates to the nucleus. (3) AHR binds with ARNT at gene promoter regions. (4) DNA methylation occurs by DNMTs. (5) Formation of methylated CpG islands, including Peg 10 and ECE1. (6) AHR influences epigenetic regulation of genes for viral proliferation. (7) AHR inhibits immune-related genes like NF-&#x3BA;B and IFNs. (8) Repression of transcription. (9) Downregulation of AHR target genes CYP1A1, CYP1A2, CYP1B1. Components are in the cytoplasm and nucleus.</alt-text>
</graphic>
</fig>
<p>The non-canonical pathway engages a broader array of cellular mechanisms and ligand types, including calcium ions and environmental toxins like 2,3,7,8 -tetrachlorodibenzo [p] dioxin (TCDD) (<xref ref-type="bibr" rid="B41">Hu et al., 2023</xref>). Calcium influx elevates PKC&#x3b1; activity, triggering cytosolic phosphate A 2 (cPLA2) phosphorylation and arachidonic acid production. In parallel, TCDD-bound AHR activates tyrosine-Src (tyr-Src) and mitogen activated protein kinase (MAPK) signalling cascades, which regulate focal adhesion kinase (FAK) and adhesion molecules. MAPK also enhances transcription of cyclooxygenase 2 (COX2), supporting prostaglandin synthesis and propagating inflammatory signals (<xref ref-type="bibr" rid="B85">Torti et al., 2021</xref>).</p>
<p>Additionally, non-canonical AHR interacts directly with transcriptional regulators such as nuclear factor kappa beta (NF-&#x3ba;&#x3b2;), activator protein-1 (AP-1) and oestrogen receptor (ER), and signal transducers and activators of transcription (STATs), modulating their activity via transactivation, transrepression, or direct protein interactions (<xref ref-type="bibr" rid="B79">Sl&#xe1;dekov&#xe1; et al., 2023</xref>). These cross-talk mechanisms integrate AHR into broader inflammatory and immunological circuits, establishing it as a multifaceted signalling hub.</p>
</sec>
<sec id="s3">
<title>The role of AHR in SARS-COV-2 immune modulation and viral replication</title>
<p>The AHR plays a central role in regulating host immune responses during viral infections, including those caused by coronaviruses such as SARS-CoV-2. Mechanistically, AHR orchestrates gene expression via multiple epigenetic pathways, chromatin remodelling, microRNA regulation, histone acetylation, and DNA methylation, which collectively influence immune homeostasis and disease progression (reviewed in (<xref ref-type="bibr" rid="B31">Giovannoni and Quintana, 2021</xref>)). Viral activation of AHR is recognized as a strategic immune evasion tactic that facilitates replication and exacerbates pathogenesis (<xref ref-type="fig" rid="F3">Figure 3</xref>). In regard to COVID-19, SARS-CoV-2 triggers AHR signalling upon ACE2-mediated cellular entry, leading to mucin hypersecretion and suppression of key antiviral pathways, particularly type I interferon (IFN-I) and NF-&#x3ba;B signalling, thereby promoting viral persistence and respiratory pathology (9, 31, <xref ref-type="fig" rid="F3">Figure 3</xref>).</p>
<p>AHR functions as a proviral factor across several viruses, including ZIKV, DENV, and HSV-1, with inhibition studies demonstrating reduced viral loads and restored immune signalling (<xref ref-type="bibr" rid="B4">Anderson et al., 2021</xref>; <xref ref-type="bibr" rid="B24">Chilosi et al., 2022</xref>). Through its transcriptional networks, AHR engages host and viral genomic elements, regulating effector proteins such as TiPARP, which supports coronavirus replication (<xref ref-type="bibr" rid="B41">Hu et al., 2023</xref>). Immunologically, AHR modulates CD4<sup>&#x2b;</sup> T cell subset polarization, influencing the Th17, Treg, and Tr1 balance. Its control over FOXP3, the master transcription factor of Tregs, exemplifies its epigenetic reach (<xref ref-type="bibr" rid="B6">Badawy, 2023</xref>; <xref ref-type="bibr" rid="B25">Dehhaghi et al., 2024</xref>). Dysregulation within the Treg/Th17 axis is associated with hyperinflammatory states, including cytokine storm and multi-organ failure in severe COVID-19 cases (<xref ref-type="bibr" rid="B25">Dehhaghi et al., 2024</xref>; <xref ref-type="bibr" rid="B8">Balaton et al., 2015</xref>).</p>
<p>Beyond general immune modulation, AHR-related epigenetic factors intersect with sex-based differences in disease outcomes. Males consistently exhibit higher ICU admissions and mortality; a trend partly linked to X-chromosome inactivation (XCI). XCI is an epigenetic process that allows females to selectively express immune-related genes from the inactivated X chromosome, enhancing immune responsiveness and providing protection against X-linked disorders (<xref ref-type="bibr" rid="B8">Balaton et al., 2015</xref>; <xref ref-type="bibr" rid="B29">Gendrel et al., 2012</xref>; <xref ref-type="bibr" rid="B38">Harper, 2011</xref>). Coronaviruses have been shown to exploit host epigenetic machinery, including DNA methyltransferases (DNMTs) and histone modifiers, to repress antiviral genes and sustain viral persistence, reviewed in (<xref ref-type="bibr" rid="B31">Giovannoni and Quintana, 2021</xref>), and illustrated in <xref ref-type="fig" rid="F3">Figure 3</xref>. SARS-CoV-2 infection has been associated with differential methylation of <italic>Peg10</italic> and <italic>ECE1</italic>. <italic>Peg10</italic> is a paternally imprinted gene that plays a critical role in cell proliferation, survival, and oncogenic pathways (<xref ref-type="bibr" rid="B58">Ono et al., 2006</xref>). In contrast, ECE1 encodes <italic>endothelin-converting enzyme-1</italic>, which regulates vascular tone and has been associated with cardiac stress and injury (<xref ref-type="bibr" rid="B75">Shimada et al., 1995</xref>). Epigenetic modulation of these genes during COVID-19 highlights a potential mechanism underlying both long-term proliferative disorders and cardiovascular complications observed in patients (<xref ref-type="fig" rid="F3">Figure 3</xref>) (<xref ref-type="bibr" rid="B58">Ono et al., 2006</xref>; <xref ref-type="bibr" rid="B75">Shimada et al., 1995</xref>).</p>
<p>Comparative analyses across SARS-CoV-1, MERS-CoV, and animal coronaviruses reveal conserved AHR activation profiles and transcriptional remodelling, particularly through downstream targets such as <italic>CYP1A1</italic> and <italic>CYP1B1</italic> (<xref ref-type="bibr" rid="B19">Cannon et al., 2021</xref>; <xref ref-type="bibr" rid="B71">Seo and Kwon, 2023</xref>; <xref ref-type="bibr" rid="B72">Shadboorestan et al., 2023</xref>). These viruses hijack cellular stress and xenobiotic pathways to amplify AHR activity, further dampening pro-inflammatory cytokine production and compromising immune defence (<xref ref-type="bibr" rid="B33">Giovannoni et al., 2021</xref>). Variant-specific modulation of AHR has also been observed (<xref ref-type="bibr" rid="B35">Guarnieri, 2022</xref>). For instance, the Delta variant elevates IL-6 and IFN-&#x3b3; production, upregulating IDO1 and enhancing kynurenine-mediated AHR signalling. In contrast, Omicron induces a muted cytokine response, potentially attenuating AHR-driven suppression (<xref ref-type="bibr" rid="B10">Barh et al., 2023</xref>; <xref ref-type="bibr" rid="B49">Korobova et al., 2022</xref>; <xref ref-type="bibr" rid="B50">Kr et al., 2025</xref>; <xref ref-type="bibr" rid="B62">Rangchaikul and Venketaraman, 2021</xref>; <xref ref-type="bibr" rid="B73">Shahbaz et al., 2023</xref>). Despite these variant differences, data on strain-specific interactions with the IDO1-KYN-AHR axis remain limited, warranting further investigation.</p>
<p>AHR&#x2019;s role in viral pathogenesis extends beyond coronaviruses. In infections like human cytomegalovirus (HCMV), HIV, and ZIKV, pathogens manipulate TRP metabolism to produce kynurenine and other endogenous AHR ligands, establishing a metabolic-immune interface conducive to viral latency and immune suppression (<xref ref-type="bibr" rid="B46">Kgatle et al., 2021</xref>; <xref ref-type="bibr" rid="B4">Anderson et al., 2021</xref>; <xref ref-type="bibr" rid="B8">Balaton et al., 2015</xref>). Elevated kynurenine levels correlate with high viral burden and reactivation risks, especially in HCMV-infected cells (<xref ref-type="bibr" rid="B33">Giovannoni et al., 2021</xref>). AHR also influences the crosstalk between innate and adaptive immunity, impacting replication kinetics and immune tolerance (<xref ref-type="bibr" rid="B47">Kgatle et al., 2021</xref>). By directly engaging both host and viral genetic elements, AHR perpetuates viral replication and immune dysregulation (<xref ref-type="bibr" rid="B4">Anderson et al., 2021</xref>).</p>
<p>Taken together, the convergence of AHR signalling, sex-specific epigenetic dynamics, and viral reprogramming mechanisms positions AHR as a critical immunomodulatory node exploited by diverse viruses. Its inhibition not only holds promise in restoring antiviral defence but also presents a targeted therapeutic avenue to mitigate disease severity across multiple viral infections.</p>
</sec>
<sec id="s4">
<title>The role of IDO/KYN in AHR activation and COVID-19 pathogenesis</title>
<p>KYN, a key metabolite of TRP degradation, is a potent endogenous ligand of the AHR (<xref ref-type="bibr" rid="B71">Seo and Kwon, 2023</xref>; <xref ref-type="bibr" rid="B72">Shadboorestan et al., 2023</xref>; <xref ref-type="bibr" rid="B80">Solvay et al., 2023</xref>). Upon activation, AHR orchestrates a cascade of immune-modulatory effects, including suppression of antiviral signalling and promotion of an immunosuppressive environment. This pathogen-exploitable mechanism is not exclusive to SARS-CoV-2; several viruses leverage the IDO1-KYN-AHR axis to facilitate infection and evade host immune defences (<xref ref-type="bibr" rid="B24">Chilosi et al., 2022</xref>). IDO1 is a member of the IDO enzymes, which also includes IDO2.</p>
<p>During COVID-19, AHR activation contributes broadly to disease progression, modulating immune responses, vascular integrity, and neurological function. The enzyme IDO1, which initiates TRP catabolism, is significantly upregulated during SARS-CoV-2 infection. Its isoform, IDO2, is also expressed, with IDO1 linked to early-to-mild pneumonia and IDO2 prevalent in more severe and fatal presentations (<xref ref-type="bibr" rid="B33">Giovannoni et al., 2021</xref>). COVID-19&#x2013;induced inflammation elevates key cytokines such as IFN-&#x3b3;, IL-1&#x3b2;, and IL-6, which potently induce IDO1 expression in immune cells including macrophages, fibroblasts, and dendritic cells (<xref ref-type="fig" rid="F4">Figure 4</xref>) (<xref ref-type="bibr" rid="B4">Anderson et al., 2021</xref>; <xref ref-type="bibr" rid="B24">Chilosi et al., 2022</xref>; <xref ref-type="bibr" rid="B25">Dehhaghi et al., 2024</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>The role of IDO/KYN in AHR activation. When infected with SARS-CoV-2, tryptophan metabolism is triggered, leading to the production of kynurenine via an intermediate called IDO1. The upregulation of IDO1, a rate-limiting molecule, acts as an endogenous ligand that activates AHR. The activated AHR then binds to the promoter regions of the ACE2 receptor, regulating its function and facilitating viral attachment and entry into the cells.</p>
</caption>
<graphic xlink:href="fmmed-05-1599785-g004.tif">
<alt-text content-type="machine-generated">Diagram illustrating the impact of SARS-CoV-2 infection on tryptophan metabolism in lung epithelial cells. It shows the processes involving TRP, KYN, and IDO-1, leading to the activation of AHR, which binds to the promoter region of ACE-2, regulating viral attachment. The cellular pathway is highlighted in a lung section of a person.</alt-text>
</graphic>
</fig>
<p>IDO1 catalyses the conversion of TRP to KYN, which is subsequently metabolized by kynurenine aminotransferase (KAT) into kynurenic acid (KYNA), both recognized AHR agonists (<xref ref-type="bibr" rid="B24">Chilosi et al., 2022</xref>). TRP, an essential amino acid with critical roles in protein synthesis, immune regulation, and neurological function, becomes increasingly depleted under these inflammatory conditions, amplifying downstream AHR signalling (<xref ref-type="bibr" rid="B33">Giovannoni et al., 2021</xref>) (<xref ref-type="fig" rid="F4">Figure 4</xref>).</p>
<p>IDO1 is highly expressed in macrophages, microglia, neuronal cells, and mucosal tissues such as the placenta and gut (<xref ref-type="bibr" rid="B25">Dehhaghi et al., 2024</xref>). Its role in TRP breakdown along the KYN pathway generates metabolites with profound immunological effects, including dampening of pro-inflammatory cytokines and alteration of immune cell differentiation (<xref ref-type="bibr" rid="B4">Anderson et al., 2021</xref>; <xref ref-type="bibr" rid="B6">Badawy, 2023</xref>). In regard to COVID-19, this metabolic-immune interplay is increasingly recognized as a driver of pathogenesis (<xref ref-type="bibr" rid="B31">Giovannoni and Quintana, 2021</xref>; <xref ref-type="bibr" rid="B16">Bowler et al., 2022</xref>; <xref ref-type="bibr" rid="B68">Salem et al., 2023</xref>) (<xref ref-type="fig" rid="F4">Figure 4</xref>).</p>
<p>Notably, SARS-CoV-2 and related coronaviruses may manipulate AHR activation indirectly through modulation of Ti-PARP and cytokine networks via the IDO1-KYN pathway, sometimes operating independently of AHR itself (<xref ref-type="bibr" rid="B4">Anderson et al., 2021</xref>; <xref ref-type="bibr" rid="B25">Dehhaghi et al., 2024</xref>). Initially quiescent during mild or subclinical infection, the IDO1-KYN axis becomes hyperactivated as inflammation escalates, leading to Systemic AHR Activation Syndrome (SAAS) and sustained immune dysfunction (<xref ref-type="bibr" rid="B4">Anderson et al., 2021</xref>; <xref ref-type="bibr" rid="B6">Badawy, 2023</xref>). This dysregulation impairs natural killer (NK) cell function, suppresses CD8<sup>&#x2b;</sup> T cell responses, and downregulates MHC-II expression, contributing to immune cell exhaustion and viral persistence (<xref ref-type="bibr" rid="B6">Badawy, 2023</xref>).</p>
<p>Elevated KYN and AHR activation are also associated with melatonin deficiency, due in part to SARS-CoV-2-mediated suppression of ACE2, which impairs TRP absorption in the gut (<xref ref-type="bibr" rid="B55">Murray and Perdew, 2020</xref>). This metabolic shift further exacerbates immunosuppression and may increase disease severity. Additionally, lipopolysaccharide (LPS)-induced inflammation serves as a secondary trigger for AHR activation, compounding the severity of COVID-19 (<xref ref-type="bibr" rid="B21">Chen Q. et al., 2023</xref>; <xref ref-type="bibr" rid="B61">Ramasamy and Subbian, 2021</xref>; <xref ref-type="bibr" rid="B70">Sen, 2022</xref>). Beyond its transcriptional role, nuclear AHR may act as an E3 ubiquitin ligase, mediating chromatin remodelling and contributing to epigenetic dysfunction, further amplifying inflammatory and immunosuppressive signals during advanced disease stages.</p>
<p>The immunomodulatory function of the IDO1-KYN-AHR axis in COVID-19 has prompted interest in IDO1 inhibition as a potential therapeutic strategy. While IDO1 inhibitors are well-characterized in oncology and infectious diseases, their application in COVID-19 is still emerging. Preclinical evidence supports the potential efficacy of IDO1 inhibition: <italic>in vitro</italic> studies using THP-1 and RAW264.7 cell lines exposed to cytokine storm conditions showed that IDO1 inhibitors such as 1-methyl-tryptophan (1-MT) and Y103 effectively suppressed IDO1 activity, reduced AHR expression, and downregulated key inflammatory mediators such as CYP1A1 (<xref ref-type="bibr" rid="B6">Badawy, 2023</xref>). Furthermore, dexamethasone, a clinical agent used in COVID-19 treatment, exerts partial inhibitory effects on IDO1 and AHR through glucocorticoid receptor-mediated pathways, contributing to reduced cytokine storm severity and enhanced viral clearance (<xref ref-type="bibr" rid="B6">Badawy, 2023</xref>).</p>
<p>Although these findings highlight mechanistic rationale for IDO1 inhibition in SARS-CoV-2 infection, clinical studies directly assessing IDO1-specific inhibitors in COVID-19 populations remain limited. The dual role of IDO1 in promoting immune tolerance and suppressing excessive inflammation poses challenges in therapeutic targeting, particularly given its tissue-specific expression and disease phase-dependent activity. Nonetheless, modulation of this pathway continues to be explored, and may offer adjunctive benefits when combined with anti-inflammatory or antiviral therapies.</p>
</sec>
<sec id="s5">
<title>The activation of AHR in COVID-19-known comorbidities</title>
<p>The activation of the AHR plays a pivotal role in modulating immune, inflammatory, and metabolic pathways during COVID-19, particularly in individuals with pre-existing comorbidities. Across these conditions, AHR signalling has been shown to intensify disease severity by promoting immune suppression, chronic inflammation, and physiological dysfunction.</p>
<p>AHR is activated by SARS-CoV-2 itself as well as by environmental ligands such as dioxins and TRP-derived metabolites. This activation leads to the upregulation of immunosuppressive cytokines, notably IL-6, IL-10, and TGF-&#x3b2;, which contribute to persistent inflammation and impaired antiviral immunity. Elevated levels of IL-6 and TGF-&#x3b2; have been correlated with severe lung inflammation and fibrosis, as well as dysregulation of the kynurenine pathway (KP), a TRP metabolic pathway consistently disturbed in COVID-19 patients (<xref ref-type="bibr" rid="B20">Chatterjee and Maparu, 2025</xref>; <xref ref-type="bibr" rid="B40">Hu et al., 2021</xref>; <xref ref-type="bibr" rid="B54">Moura-Alves et al., 2014</xref>; <xref ref-type="bibr" rid="B60">Ragab et al., 2020</xref>; <xref ref-type="bibr" rid="B84">Thomas et al., 2020</xref>).</p>
<p>Emerging data suggest that AHR-related effects may persist beyond acute infection, contributing to post-viral sequelae characteristic of long COVID (<xref ref-type="bibr" rid="B78">Singh et al., 2022</xref>). In individuals recovering from mild to severe COVID-19, the KP remains markedly upregulated, particularly in cases where mild cognitive deficits are observed. Key KP metabolites, including 3-hydroxyanthranilic acid, kynurenine, and quinolinic acid, are known endogenous AHR ligands and have been associated with sustained AHR activation in peripheral circulation. This chronic engagement of AHR signalling may perpetuate neuroinflammation, immunosuppression, and metabolic dysregulation, thereby contributing to symptoms such as brain fog, fatigue, and cognitive decline seen in long COVID (<xref ref-type="bibr" rid="B20">Chatterjee and Maparu, 2025</xref>; <xref ref-type="bibr" rid="B40">Hu et al., 2021</xref>; <xref ref-type="bibr" rid="B54">Moura-Alves et al., 2014</xref>; <xref ref-type="bibr" rid="B60">Ragab et al., 2020</xref>; <xref ref-type="bibr" rid="B84">Thomas et al., 2020</xref>; <xref ref-type="bibr" rid="B78">Singh et al., 2022</xref>). These findings underscore the possibility that SARS-CoV-2-induced metabolic remodelling through the KP can result in persistent AHR-driven transcriptional programs that outlast viral clearance (<xref ref-type="bibr" rid="B78">Singh et al., 2022</xref>).</p>
<p>A study by <xref ref-type="bibr" rid="B3">Anderson et al. (2020)</xref> highlighted that pro-inflammatory cytokines can perpetuate AHR activation, which in turn suppresses antiviral responses and exhausts immune cells, worsening SARS-CoV-2 pathogenesis. <xref ref-type="bibr" rid="B36">Gupta et al. (2025)</xref> reported that chronic inflammation and immune dysregulation driven by AHR activity may account for the persistence of long COVID symptoms (<xref ref-type="bibr" rid="B36">Gupta et al., 2025</xref>). AHR&#x2019;s influence on T-helper 17 (Th17) cell differentiation and IL-22 secretion, as described by <xref ref-type="bibr" rid="B54">Moura-Alves et al. (2014)</xref>, may further exacerbate respiratory inflammation and cytokine storm events in COVID-19 patients. Furthermore, AHR suppresses IFN-&#x3b1;/&#x3b2; responses, key antiviral defences, thereby prolonging viral replication and increasing disease severity (<xref ref-type="bibr" rid="B54">Moura-Alves et al., 2014</xref>).</p>
<p>In chronic lung diseases such as chronic obstructive pulmonary disease (COPD) and asthma, AHR activation worsens respiratory function through enhanced mucus production and airway remodelling. <xref ref-type="bibr" rid="B23">Chiba et al. (2011)</xref> demonstrated that AHR signalling in airway epithelial cells upregulates mucin genes MUC5AC and MUC5B, contributing to mucus hypersecretion (<xref ref-type="bibr" rid="B23">Chiba et al., 2011</xref>). In COPD, AHR promotes goblet cell differentiation and airway obstruction, conditions that heighten the risk of COVID-19-related respiratory failure (<xref ref-type="bibr" rid="B15">Bornstein et al., 2021</xref>; <xref ref-type="bibr" rid="B82">Steenblock et al., 2021</xref>).</p>
<p>Heightened AHR activity also facilitates fibrotic signalling through TGF-&#x3b2; and IL-22, increasing susceptibility to long-term pulmonary fibrosis. Persistent AHR activation drives epithelial-to-mesenchymal transition (EMT), a hallmark of fibrotic remodelling (<xref ref-type="bibr" rid="B77">Simonian et al., 2010</xref>). AHR-mediated induction of TGF-&#x3b2;1 has been implicated in post-viral fibrosis, and studies show that AHR inhibition can reduce fibrotic gene expression in lung tissues, supporting its potential as a therapeutic target (<xref ref-type="bibr" rid="B2">Alfaro et al., 2024</xref>).</p>
<p>AHR signalling is markedly altered in individuals with metabolic disorders such as obesity, diabetes, and hypertension, conditions closely linked to severe COVID-19 outcomes. In obesity, dietary and microbial metabolites can hyperactivate AHR, leading to insulin resistance and chronic low-grade inflammation (<xref ref-type="bibr" rid="B13">Bock, 2021</xref>; <xref ref-type="bibr" rid="B76">da Silva et al., 2022</xref>). This disrupts adipose tissue homeostasis and elevates pro-inflammatory cytokines such as IL-6 and TNF-&#x3b1;, compounding metabolic dysfunction (<xref ref-type="bibr" rid="B15">Bornstein et al., 2021</xref>; <xref ref-type="bibr" rid="B82">Steenblock et al., 2021</xref>).</p>
<p>AHR&#x2019;s role in glucose metabolism is especially critical during SARS-CoV-2 infection. Recent studies reveal that AHR activation in pancreatic &#x3b2;-cells impairs insulin secretion, increasing the risk of hyperglycaemia (<xref ref-type="bibr" rid="B45">Jedrzejak et al., 2022</xref>). Elevated AHR activity also contributes to vascular injury, heightening the risk of thrombotic complications, stroke, and myocardial injury via mechanisms involving oxidative stress and endothelial dysfunction (<xref ref-type="bibr" rid="B15">Bornstein et al., 2021</xref>).</p>
<p>In type 2 diabetes mellitus (T2DM), AHR activation can interfere with insulin receptor signalling and amplify vascular inflammation. This enhances susceptibility to severe COVID-19 complications including diabetic ketoacidosis and multi-organ failure (<xref ref-type="bibr" rid="B53">Memon and Abdelalim, 2021</xref>). In hypertensive individuals, AHR contributes to cardiovascular risk by suppressing ACE2, a key regulator of the renin-angiotensin system (RAS). The downregulation of ACE2 leads to increased angiotensin II levels, promoting inflammation and vasoconstriction (<xref ref-type="bibr" rid="B87">Wu et al., 2021</xref>). AHR-targeted therapies, including the use of antagonists, may offer therapeutic promise for mitigating cardiometabolic complications in COVID-19.</p>
<p>
<xref ref-type="bibr" rid="B39">Healey et al. (2024)</xref> reported that AHR activation alters immune cell populations in both the lungs and bone marrow of murine coronavirus-infected models, highlighting AHR&#x2019;s persistent role beyond acute infection. The study suggests that long COVID, characterized by sustained immune dysregulation, may be driven in part by prolonged AHR signalling. These insights reveal AHR as a key regulator of host-pathogen interactions, with far-reaching implications for post-viral recovery and therapeutic intervention (<xref ref-type="bibr" rid="B39">Healey et al., 2024</xref>).</p>
</sec>
<sec id="s6">
<title>Potential therapeutic agents targeting AHR in COVID-19</title>
<p>The AHR, described as an environmental sensor and transcription factor, responds to xenobiotics, dietary metabolites, microbial byproducts, and viral components to modulate cellular homeostasis and immune signalling. In the context of COVID-19, AHR represents a promising therapeutic target for modulating aberrant inflammatory responses. Agonists may suppress cytokine storms and hyperinflammation, whereas antagonists could reverse virus-induced immune suppression and fibrosis (<xref ref-type="bibr" rid="B34">Grishanova and Perepechaeva, 2024</xref>; <xref ref-type="bibr" rid="B89">Xu et al., 2024</xref>).</p>
<p>Dietary ligands such as indole-3-carbinol (I3C) and diindolylmethane (DIM), derived from cruciferous vegetables, activate AHR to induce anti-inflammatory cytokines and dampen immune overactivation (<xref ref-type="bibr" rid="B7">Bahman et al., 2024</xref>; <xref ref-type="bibr" rid="B42">Huang et al., 2023</xref>). Endogenous ligands from gut microbiota further contribute to immune homeostasis, suggesting that dietary interventions and probiotics could restore immunological balance (<xref ref-type="bibr" rid="B7">Bahman et al., 2024</xref>). Small-molecule modulators like Tapinarof, with established anti-inflammatory properties, and synthetic compounds such as Furans, PCB153, Benzo(a)pyrene (BaP), and Benz(a)anthracene (BA) are under investigation for attenuating lung injury and promoting regulatory immune responses (<xref ref-type="bibr" rid="B79">Sl&#xe1;dekov&#xe1; et al., 2023</xref>; <xref ref-type="bibr" rid="B22">Chen Y. et al., 2023</xref>). These modulators are described in <xref ref-type="table" rid="T1">Table 1</xref>.</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Selected key agents of AHR used in therapeutics that may have effect in COVID-19.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="center">AHR agent</th>
<th align="center">Agonist/antagonist</th>
<th align="center">Stage of testing</th>
<th align="center">Benefits</th>
<th align="center">Risks</th>
<th align="center">Ref</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Tapinarof</td>
<td align="left">agonist</td>
<td align="left">Phase 2,3 trial</td>
<td align="left">Anti-inflammatory, anti-proliferative, acts through immune regulation, skin barrier restoration, oxidative stress</td>
<td align="left">Gastroenteritis, nasopharyngitis</td>
<td align="left">
<xref ref-type="bibr" rid="B43">Igarashi et al. (2024),</xref> <xref ref-type="bibr" rid="B44">Igarashi et al. (2025),</xref> <xref ref-type="bibr" rid="B69">Santini et al. (2025)</xref>
</td>
</tr>
<tr>
<td align="left">BAY2416964</td>
<td align="left">antagonist</td>
<td align="left">Preclinical, phase 1</td>
<td align="left">Blocks AHR activation through the KYN, exerts immunosuppressive effects of AHR</td>
<td align="left">Nause, fatigue</td>
<td align="left">
<xref ref-type="bibr" rid="B27">Dumbrava et al. (2023),</xref> <xref ref-type="bibr" rid="B59">Papadopoulos et al. (2023)</xref>
</td>
</tr>
<tr>
<td align="left">GNF351</td>
<td align="left">antagonist</td>
<td align="left">FDA approved</td>
<td align="left">Inhibits both the genomic and non-genomic activation of AHR</td>
<td align="left">Poor absorption and extensive metabolism</td>
<td align="left">
<xref ref-type="bibr" rid="B28">Fang et al. (2014),</xref> <xref ref-type="bibr" rid="B57">Ondrov&#xe1; et al. (2023)</xref>
</td>
</tr>
<tr>
<td align="left">BaP</td>
<td align="left">antagonist</td>
<td align="center">_</td>
<td align="left">Induces apoptosis and CYP1A1 activity during AHR activation</td>
<td align="left">Induces cardiac and mutagenic effects of damaged DNA</td>
<td align="left">
<xref ref-type="bibr" rid="B46">Zou et al. (2024)</xref>
</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Biomarker discovery and drug screening for AHR-targeted therapies are increasingly supported by high-throughput technologies and artificial intelligence. Various agents are currently being developed not only for systemic treatment but also for use as companion diagnostics, particularly in inflammatory skin conditions like psoriasis (<xref ref-type="bibr" rid="B37">Haarmann-Stemmann et al., 2025</xref>). These efforts highlight AHR&#x2019;s diagnostic and therapeutic versatility.</p>
<p>Nevertheless, prolonged or excessive AHR activation poses risks, including immune suppression, viral persistence, and tissue fibrosis, concerns particularly relevant in long COVID-19 (<xref ref-type="bibr" rid="B85">Torti et al., 2021</xref>; <xref ref-type="bibr" rid="B32">Giovannoni et al., 2020</xref>; <xref ref-type="bibr" rid="B14">van den Boga et al., 2015</xref>). Selective AHR antagonists such as CH-223191 and GNF351 have demonstrated potential to restore IFN-1 responses, reduce fibrosis, and rebalance mucosal immunity (<xref ref-type="bibr" rid="B30">Ghiboub et al., 2020</xref>). Additionally, dietary strategies aimed at modulating tryptophan metabolism and reducing pro-inflammatory AHR ligands offer complementary approaches (<xref ref-type="bibr" rid="B64">Riaz et al., 2022</xref>).</p>
<p>Safety remains a critical challenge for chronic AHR modulation due to its complex role in regulating immune balance and detoxification processes (<xref ref-type="bibr" rid="B19">Cannon et al., 2021</xref>; <xref ref-type="bibr" rid="B91">Zhu et al., 2014</xref>). Depending on ligand specificity and metabolism, AHR activation can either suppress or exacerbate autoimmune conditions such as lupus, rheumatoid arthritis, multiple sclerosis, and atopic dermatitis, primarily through its effects on Th17 and Treg cell dynamics, reviewed in <xref ref-type="bibr" rid="B91">Zhu et al. (2014)</xref>. While therapeutic agonists like TCDD, ITE, curcumin, and DIM show promise in promoting immunologic tolerance and reducing inflammation, rapidly metabolized ligands like FICZ may aggravate disease progression. Additionally, prolonged AHR modulation may impair cytochrome P450-mediated detoxification, increasing vulnerability to environmental toxins (reviewed in <xref ref-type="bibr" rid="B91">Zhu et al., 2014</xref>). Toxicogenomic profiling and transcriptomic analysis are valuable tools for identifying ligand-specific toxicities and differentiating transient from sustained AHR activation effects. Overall, therapeutic strategies must differentiate between protective and harmful ligands, considering both immune and metabolic outcomes.</p>
<p>Collectively, these findings underscore the therapeutic promise of targeting AHR in COVID-19. Continued research into ligand selectivity, delivery mechanisms, and integrated omics-based screening may guide the development of precise, safe, and effective interventions for mitigating inflammation and improving outcomes in COVID-19 and its associated complications.</p>
</sec>
<sec id="s7">
<title>Conclusion and future perspectives</title>
<p>The AHR continues to garner significant attention due to its multifaceted transcriptional functions, ranging from xenobiotic metabolism to regulation of immune and inflammatory signalling pathways. Evidence suggests that AHR activation during coronavirus infection contributes to viral replication, immune evasion, and worsened disease severity, particularly in individuals with underlying conditions such as diabetes, hypertension, and respiratory disorders. Transcriptional regulation of AHR further amplifies inflammation and metabolic dysfunction, positioning AHR as a key molecular mediator in COVID-19 pathogenesis.</p>
<p>In response to its diverse biological roles, recent advances have focused on developing AHR-based biomarkers and companion diagnostics. Artificial intelligence tools now enable efficient screening and modelling of ligand&#x2013;AHR interactions, accelerating therapeutic discovery. Tapinarof, a clinically explored AHR modulator, exemplifies this translational progress, serving as both a topical agent and a diagnostic companion in psoriasis immunotherapy, with potential applications in COVID-19-related immune regulation.</p>
<p>Despite these promising developments, further investigation is essential to clarify the precise signalling pathways through which AHR contributes to viral propagation and immune imbalance. Deciphering its genetic and epigenetic regulation, as well as identifying interacting regulatory proteins, may pave the way for interventions that selectively suppress pathological AHR activity while preserving its physiological functions.</p>
<p>Current research into AHR antagonists such as CH-223191 and GNF351 shows potential in reversing inflammation and metabolic derangements associated with COVID-19. Complementary approaches, including dietary modulation and probiotic-driven regulation of tryptophan metabolism, may help restore immune homeostasis. These emerging therapeutic and diagnostic strategies underscore the importance of continued exploration of AHR biology in COVID-19 and other inflammatory diseases. Advancing this field could significantly improve clinical outcomes and reduce long-term complications.</p>
</sec>
</body>
<back>
<sec sec-type="author-contributions" id="s8">
<title>Author contributions</title>
<p>SM: Writing &#x2013; review and editing, Conceptualization, Writing &#x2013; original draft. NM: Writing &#x2013; original draft. TS: Writing &#x2013; original draft. MS: Conceptualization, Funding acquisition, Writing &#x2013; review and editing. MK: Conceptualization, Supervision, Writing &#x2013; original draft, Writing &#x2013; review and editing.</p>
</sec>
<sec sec-type="funding-information" id="s9">
<title>Funding</title>
<p>The author(s) declare that no financial support was received for the research and/or publication of this article.</p>
</sec>
<ack>
<p>Figures were created with <ext-link ext-link-type="uri" xlink:href="http://BioRender.com">BioRender.com</ext-link> (Agreement Reference Numbers: (US280GROR8, IJ28IWGML3 WD28MVMT6J, and OY28MVR4UP).</p>
</ack>
<sec sec-type="COI-statement" id="s10">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="ai-statement" id="s11">
<title>Generative AI statement</title>
<p>The author(s) declare that Generative AI was used in the creation of this manuscript. AI was used for fixing grammatical errors.</p>
<p>Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.</p>
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<sec sec-type="disclaimer" id="s12">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
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<title>Author disclaimer</title>
<p>The views and opinions presented in this article are those of the authors alone and do not necessarily reflect the views of their affiliated organizations, the publisher, the editors, or the reviewers. The publisher does not guarantee or endorse any product evaluated or any claims made by the manufacturer in this article.</p>
</sec>
<sec id="s14">
<title>Abbreviations</title>
<p>ACE2, Angiotensin converting enzyme 2; AHR, Aryl hydrocarbon receptor; ARNT, Aryl hydrocarbon receptor nuclear translocator; bHLH, Basic Helix Loop Helix; COVID-19, Coronavirus Disease 2019; EMT, Epithelial-to-mesenchymal transition; FICZ, 6-formylindolo (3,2-b) carbazole (FICZ); IDO1, Indoleamine-2, 3-dioxygenase 1; IL, Interleukin; HAH, Halogenated aromatic hydrocarbons; KYNA, Kynurenic acid; PAH, Polycyclic aromatic hydrocarbons; RAS, Renin-angiotensin system; T2DM, Type 2 diabetes mellitus; TGF, Tumour growth factor; TNF-&#x3b1;, Tumour necrosis factor alpha; TRP, Tryptophan.</p>
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