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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mol. Biosci.</journal-id>
<journal-title>Frontiers in Molecular Biosciences</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mol. Biosci.</abbrev-journal-title>
<issn pub-type="epub">2296-889X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">748449</article-id>
<article-id pub-id-type="doi">10.3389/fmolb.2021.748449</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Molecular Biosciences</subject>
<subj-group>
<subject>Mini Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Role of BET Proteins in Inflammation and CNS Diseases</article-title>
<alt-title alt-title-type="left-running-head">Liu et&#x20;al.</alt-title>
<alt-title alt-title-type="right-running-head">BET Proteins in CNS Diseases</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Lei</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/167454/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Changjun</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/459939/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Candelario-Jalil</surname>
<given-names>Eduardo</given-names>
</name>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/296371/overview"/>
</contrib>
</contrib-group>
<aff>Department of Neuroscience, McKnight Brain Institute, University of Florida, <addr-line>Gainesville</addr-line>, <addr-line>FL</addr-line>, <country>United&#x20;States</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/689196/overview">Sheetal Uppal</ext-link>, Bhabha Atomic Research Centre (BARC), India</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/408636/overview">Clara Penas</ext-link>, Universitat Aut&#xf2;noma de Barcelona, Spain</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1038687/overview">Qi Gao</ext-link>, Stanford University, United&#x20;States</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Eduardo Candelario-Jalil, <email>ecandelario@ufl.edu</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Cellular Biochemistry, a section of the journal Frontiers in Molecular Biosciences</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>16</day>
<month>09</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>8</volume>
<elocation-id>748449</elocation-id>
<history>
<date date-type="received">
<day>28</day>
<month>07</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>06</day>
<month>09</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Liu, Yang and Candelario-Jalil.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Liu, Yang and Candelario-Jalil</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these&#x20;terms.</p>
</license>
</permissions>
<abstract>
<p>
<underline>B</underline>romodomain and <underline>e</underline>xtra-<underline>t</underline>erminal domain (BET) proteins consist of four mammalian members (BRD2, BRD3, BRD4, and BRDT), which play a pivotal role in the transcriptional regulation of the inflammatory response. Dysregulated inflammation is a key pathological process in various CNS disorders through multiple mechanisms, including NF-&#x3ba;B and Nrf2 pathways, two well-known master regulators of inflammation. A better mechanistic understanding of the BET proteins&#x2019; role in regulating the inflammatory process is of great significance since it could reveal novel therapeutic targets to reduce neuroinflammation associated with many CNS diseases. In this minireview, we first outline the structural features of BET proteins and summarize genetic and pharmacological approaches for BET inhibition, including novel strategies using proteolysis-targeting chimeras (PROTACs). We emphasize <italic>in&#x20;vitro and in&#x20;vivo</italic> evidence of the interplay between BET proteins and NF-&#x3ba;B and Nrf2 signaling pathways. Finally, we summarize recent studies showing that BET proteins are essential regulators of inflammation and neuropathology in various CNS diseases.</p>
</abstract>
<kwd-group>
<kwd>neuroinflammation</kwd>
<kwd>proteolysis-targeting chimera</kwd>
<kwd>neurological diseases</kwd>
<kwd>stroke</kwd>
<kwd>multiple sclerosis</kwd>
<kwd>spinal cord injury</kwd>
<kwd>seizure</kwd>
<kwd>Alzheimer&#x2019;s disease</kwd>
</kwd-group>
<contract-num rid="cn001">R01-NS109816</contract-num>
<contract-sponsor id="cn001">National Institutes of Health<named-content content-type="fundref-id">10.13039/100000002</named-content>
</contract-sponsor>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>The bromodomain and extra-terminal domain (BET) family is evolutionarily conserved and plays a pivotal role in the transcriptional regulation of inflammation (<xref ref-type="bibr" rid="B5">Belkina and Denis, 2012</xref>; <xref ref-type="bibr" rid="B52">Marmorstein and Zhou, 2014</xref>). BET proteins consist of the ubiquitously expressed bromodomain-containing protein (BRD) 2, 3, 4, and the testis-specific isoform BRDT. Over the past decade, BET proteins have attracted intense interest in academia and the pharmaceutical industry as new therapeutic targets for inflammation-associated CNS diseases and cancer. Since the discovery of BET proteins in the 1990s (<xref ref-type="bibr" rid="B34">Haynes et&#x20;al., 1992</xref>), subsequent work with pharmacologic and genetic tools focused on BET proteins&#x2019; biological function and their relevance in diseases. In the 2000s, early studies showed that loss of either BRD2 or BRD4 is lethal in mice (<xref ref-type="bibr" rid="B35">Houzelstein et&#x20;al., 2002</xref>; <xref ref-type="bibr" rid="B66">Shang et&#x20;al., 2009</xref>). Since 2010, significant progress has been made in understanding the crucial role that BET proteins play as enhancers of inflammatory gene transcription. Emerging evidence has recently revealed that BET proteins coordinately regulate an expansive range of inflammatory genes through NF-kB or Nrf2 pathway. A complete understanding of BET protein&#x2019;s role in regulating inflammation and its contribution to CNS pathologies is significant.</p>
<p>Against this background, the present minireview outlines the structural characteristics of BET proteins, genetic and pharmacological inhibition approaches in discovering BET biology, BET inflammatory regulation, and its role in different CNS diseases. In particular, we present evidence of the interplay between BET proteins and the transcription factors NF-kB and Nrf2, which are essential regulators of the inflammatory process.</p>
</sec>
<sec id="s2">
<title>Structural Domains of BET Proteins</title>
<p>BET proteins share a common domain architecture, characterized by the presence of two tandem N-terminal bromodomains (BD1 and BD2) and a unique extra-terminal (ET) domain (<xref ref-type="bibr" rid="B68">Shi and Vakoc, 2014</xref>) (<xref ref-type="fig" rid="F1">Figure&#x20;1A</xref>). Other BD-containing proteins lack this double-barrel feature. In addition, BRD4 and BRDT contain a unique C-terminal domain (CTD). Bromodomains (BDs) are protein interaction modules of &#x223c;110 amino acids that specifically recognize acetylated lysine in histones and other proteins with different functions and are essential for transcriptional regulation and chromatin remodeling (<xref ref-type="bibr" rid="B21">Dhalluin et&#x20;al., 1999</xref>; <xref ref-type="bibr" rid="B25">Filippakopoulos et&#x20;al., 2012</xref>). Since their initial discovery in 1992, 61 BDs have been identified in 46 different human proteins (<xref ref-type="bibr" rid="B34">Haynes et&#x20;al., 1992</xref>; <xref ref-type="bibr" rid="B16">Cochran et&#x20;al., 2019</xref>) and are clustered into eight families according to their sequence or structural similarities (<xref ref-type="bibr" rid="B34">Haynes et&#x20;al., 1992</xref>; <xref ref-type="bibr" rid="B25">Filippakopoulos et&#x20;al., 2012</xref>). As family II of BDs, the BET family is the most intensely studied.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Human BET family structural domains and mechanisms of inhibition. <bold>(A)</bold> Structural domains of BET proteins. All BET proteins share two tandem N-terminal bromodomains (BD1 and BD2) and an extra-terminal (ET) domain. In addition, Brd4 and BrdT contain a unique C-terminal domain (CTD). The numbers refer to the amino acid boundaries of each domain for the human BET proteins. The alignment of amino acid (aa) sequences is from the public protein sequence database, GenPept, NCBI Reference Sequence: Brd2, NP_005095.1; Brd3, NP_031397.1; Brd4, NP_490,597.1; BrdT, NP_001229734.2. <bold>(B)</bold> To date, all reported BET inhibitors (BETis) target BDs on BET proteins. <bold>(C)</bold> BET PROTAC mechanism. The E1 enzyme activates ubiquitin (Ub) and initiates its transfer to a target substrate through the E1-E2-E3 cascade. Then, the target substrate tagged by ubiquitin is degraded by the proteasome. Without BET PROTAC, BET protein is not recognizable for the ubiquitination process. BET PROTAC molecules can bind the target BET protein and the E3 ubiquitin ligase together, and such binding ubiquitinates the target protein, making it available for subsequent proteasomal degradation.</p>
</caption>
<graphic xlink:href="fmolb-08-748449-g001.tif"/>
</fig>
<p>BD1 and BD2 retain a high sequence identity (75%) or structural similarity across BET members (<xref ref-type="bibr" rid="B23">Ferri et&#x20;al., 2016</xref>). Most BET inhibitors bind to both BD1 and BD2. Therefore, they show selectivity for all BET proteins in a concentration-dependent manner. In contrast, BD1 and BD2 within a given BET member have low sequence similarity (45%), indicating that they may have different roles in regulating the expression of BET-sensitive genes. Indeed, most recent selective BET inhibition studies have outlined the functional difference between BD1 and BD2 in biology and therapy; BD2 displays a more selective inflammatory phenotype in producing critical pro-inflammatory mediators (<xref ref-type="bibr" rid="B39">Jahagirdar et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B31">Gilan et&#x20;al., 2020</xref>). ET domain is a protein interaction motif with a highly conserved region of &#x223c;80 amino acids, exhibiting more than 80% identity among BRD2, 3, and 4 (<xref ref-type="bibr" rid="B61">Rahman et&#x20;al., 2011</xref>). This domain carries out a regulatory function by recruiting specific effector proteins (<xref ref-type="bibr" rid="B77">Werner et&#x20;al., 2020</xref>). CTM is uniquely present in BRD4 and BRDT functions in modulating positive transcription elongation factor activity (<xref ref-type="bibr" rid="B82">Yang et&#x20;al., 2005</xref>).</p>
</sec>
<sec id="s3">
<title>Pharmacological and Genetic Approaches Help to Illuminate BET Proteins&#x2019; Function</title>
<p>BET proteins are attractive targets from a chemical and structural perspective owing to their unique properties that mechanistically link bromodomain recognition with transcriptional regulation. This feature has prompted a wave of pharmacological and genetic approaches to understand BET proteins&#x2019; biological function(s) and their role in diseases.</p>
<p>
<bold>BET inhibitors-Focus on BD inhibition.</bold> So far, all reported BET inhibitors (BETis) focus on BET BDs, a highly tractable small molecules target (<xref ref-type="fig" rid="F1">Figure&#x20;1B</xref>). In 2005 and 2006, two important proof-of-concept studies demonstrated the feasibility of small-molecule inhibition of BDs. In 2010, the landmark studies of potent and selective BETis, JQ1 and I-BET, thoroughly characterized small-molecule inhibitors targeting BET BDs and revealed the crucial role of BET proteins in anti-inflammatory and anticancer activities (<xref ref-type="bibr" rid="B26">Filippakopoulos et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B56">Nicodeme et&#x20;al., 2010</xref>). Like JQ1 and I-BET, the first-generation BETis bind with high affinity to both BDs of each BET protein, therefore competitively disrupting the binding of BDs with acetylated lysine residues. Although they are non-selective for any specific BET protein, these BETis exhibit a much higher affinity for BRD4 than for other BET family members. For instance, JQ1 was shown to be selective for BET BDs with higher affinity for BRD4 (50&#xa0;nM for BD1) and lower affinity for other BET members (60&#x2013;190&#xa0;nM) (<xref ref-type="bibr" rid="B26">Filippakopoulos et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B23">Ferri et&#x20;al., 2016</xref>). Therefore, BRD4 functional regulation is the primary effect of these BET inhibitors (<xref ref-type="bibr" rid="B26">Filippakopoulos et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B41">Kanno et&#x20;al., 2014</xref>). Emerging strategies focus on discovering compounds that selectively or cooperatively target the tandem BET BD1 and BD2, which may elucidate the differential roles of BD1 and BD2 (<xref ref-type="bibr" rid="B67">Sheppard et&#x20;al., 2020</xref>). A recent study suggests that BD1 and BD2 have separate and distinct roles in transcriptional regulation (<xref ref-type="bibr" rid="B31">Gilan et&#x20;al., 2020</xref>). To date, more than 10 BETis, including the BD2 selective inhibitor ABBV-744, have progressed to human clinical trials at different phases (<xref ref-type="bibr" rid="B16">Cochran et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B67">Sheppard et&#x20;al., 2020</xref>). The discovery of BD inhibitors and their biological and therapeutic potential have been summarized in recent excellent comprehensive reviews (<xref ref-type="bibr" rid="B24">Filippakopoulos and Knapp, 2014</xref>; <xref ref-type="bibr" rid="B23">Ferri et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B16">Cochran et&#x20;al., 2019</xref>).</p>
<p>
<bold>BET PROTACs-Induction of BET protein degradation through the ubiquitin-proteasome system (UPS).</bold> An appealing approach to block multi-domain protein function is to delete the protein completely (<xref ref-type="bibr" rid="B16">Cochran et&#x20;al., 2019</xref>), which allows rapid progress in understanding cellular protein functions and their relevance in diseases. This approach can be accomplished by either genetic manipulation (such as knockout or knockdown) or targeting protein degradation with proteolysis-targeting chimeras (PROTACs). PROTACs represent a leading strategy for targeting protein degradation through the UPS, initially reported in 2001 (<xref ref-type="bibr" rid="B63">Sakamoto et&#x20;al., 2001</xref>). PROTACs are heterobifunctional small molecules composed of two linked domains for binding the target protein and the E3 ubiquitin ligase. The binding of both moieties allows the target protein to be tagged with ubiquitin, making it available for subsequent degradation by the proteasomal machinery (<xref ref-type="fig" rid="F1">Figure&#x20;1C</xref>). The chemical probes like pan-BETis structural class can recognize and recruit BET BDs and serve as ideal PROTAC anchors for BET proteins. In 2015, the first BET-targeted PROTACs dBET1, MZ1, and ARV-825 were described, containing a BRD4 BD binding moiety (i.e.,&#x20;JQ1 or OTX015) and an E3 ligase binding moiety. These BET PROTACs recognize and recruit the E3 ubiquitin ligase to targeted BRD4, leading to rapid and efficient deletion of BET proteins, especially BRD4&#x20;<italic>in&#x20;vitro</italic> and <italic>in vivo</italic> (<xref ref-type="bibr" rid="B49">Lu et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B78">Winter et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B83">Zengerle et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B20">DeMars et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B19">DeMars et&#x20;al., 2019</xref>). Such BET targeted degradation strategy has exhibited remarkable selectivity and efficacy. For instance, a proteomic analysis revealed that dBET1 induced an 8&#x2013;10-fold decrease in BET proteins and significant downregulation in many other BET transcription-dependent proteins in treated cells (<xref ref-type="bibr" rid="B78">Winter et&#x20;al., 2015</xref>).</p>
<p>
<bold>Genetic approach.</bold> Genetic engineering animal models help identify <italic>in vivo</italic> protein function and its contribution to various diseases. Considering the fundamental role of BET proteins in controlling cell growth and proliferation, it is not surprising that the efforts for creating BET gene knockout strains have not succeeded. Indeed, the early genetic studies revealed that global loss of either BRD4 or BRD2 is lethal in mice (<xref ref-type="bibr" rid="B35">Houzelstein et&#x20;al., 2002</xref>; <xref ref-type="bibr" rid="B66">Shang et&#x20;al., 2009</xref>). BRD4 heterozygotes exhibit pre- and post-natal growth defects and various anatomical abnormalities, suggesting the BRD4&#x2019;s role in fundamental cellular processes. While the BRD2 heterozygous F1 progeny were overtly normal, the subsequent generation was not. BRDT plays an essential role in regulating male germ cell differentiation. The deletion of BRDT BD1 results in male sterility, indicating the functional importance of this testis-specific gene and target potential for male contraception (<xref ref-type="bibr" rid="B65">Shang et&#x20;al., 2007</xref>; <xref ref-type="bibr" rid="B28">Gaucher et&#x20;al., 2012</xref>). In the past 5&#xa0;years, several conditional BRD4 knockout mouse models have been generated and applied to functional analysis in various disease settings (<xref ref-type="bibr" rid="B9">Bolden et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B3">Bao et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B43">Lee et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B29">Gegonne et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B58">Penas et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B22">Duan et&#x20;al., 2020</xref>).</p>
</sec>
<sec id="s4">
<title>BET Proteins as Regulators of the Inflammatory Response</title>
<p>BET BDs control the assembly of histone acetylation-dependent chromatin complexes that regulate the expression of multiple inflammatory genes, suggesting that BET function is essentially required for coordinating the inflammation responses (<xref ref-type="bibr" rid="B33">Hargreaves et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B16">Cochran et&#x20;al., 2019</xref>). Indeed, significant progress has been achieved in the past decade, establishing the role of BET proteins in mediating inflammation with chemical inhibitors or using genetic approaches. Early studies of BET inhibition revealed good anti-inflammatory activity, which suggests that BRD2, BRD3, and BRD4 play an essential role in orchestrating the inflammatory process (<xref ref-type="bibr" rid="B33">Hargreaves et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B56">Nicodeme et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B6">Belkina et&#x20;al., 2013</xref>; <xref ref-type="bibr" rid="B68">Shi and Vakoc, 2014</xref>; <xref ref-type="bibr" rid="B80">Xu and Vakoc, 2014</xref>; <xref ref-type="bibr" rid="B3">Bao et&#x20;al., 2017</xref>). In a landmark study by Nicodeme and colleagues, BET inhibition with I-BET potently suppressed the production of pro-inflammatory proteins in activated macrophages <italic>in vivo</italic> and protected against lipopolysaccharide (LPS)-induced lethal shock (<xref ref-type="bibr" rid="B56">Nicodeme et&#x20;al., 2010</xref>). Treating macrophages with I-BET prevented the transcription of a specific subset of LPS-inducible genes that encode various inflammatory mediators. The absence of LPS stimulation led to minimal changes in global gene expression, suggesting selective inhibition of inflammatory gene expression by BET inhibition in this cell type. I-BET downregulates the expression of several pro-inflammatory cytokines (GM-CSF and IL-17) and upregulates the expression of several anti-inflammatory products (IL-10, LAG3, and EGR2), causing long-lasting suppression of the pro-inflammatory functions of Th1 cells (<xref ref-type="bibr" rid="B2">Bandukwala et&#x20;al., 2012</xref>). Such suppressive effects of I-BET-762 on T-cell mediated inflammation <italic>in vivo</italic> were also accompanied by the reduced recruitment of macrophages. <italic>In vitro</italic> studies showed that genetic disruption of BRD2 or BET inhibition by JQ1 impaired mouse macrophage inflammatory responses, indicating that BRD2 is essentially required for pro-inflammatory cytokine production in macrophages (<xref ref-type="bibr" rid="B6">Belkina et&#x20;al., 2013</xref>; <xref ref-type="bibr" rid="B40">Jung et&#x20;al., 2015</xref>). BET protein deletion by PROTAC dBET1 robustly reduced inflammatory responses in LPS-activated microglia and aged mice subjected to ischemic stroke (<xref ref-type="bibr" rid="B20">DeMars et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B19">DeMars et&#x20;al., 2019</xref>). A more recent genetic study further advanced the understanding of BET in inflammatory regulation. Mice lacking BRD4 in myeloid-lineage cells showed resistance to LPS-induced sepsis. The deletion of BRD4 reduced both the expression of LPS-induced inflammatory genes and cytokine production while enhancing the expression of a small number of LPS-suppressed genes in bone marrow-derived macrophages (<xref ref-type="bibr" rid="B3">Bao et&#x20;al., 2017</xref>). Therefore, the critical role of BET in direct and indirect inflammatory regulation has been established using various pharmacological and genetic approaches.</p>
<p>The inflammatory response, a reaction of the microcirculation to injury and/or infection, is a complex but coordinated process involving multiple levels of molecules (including complement, chemokines, cytokines, free radicals, adhesion molecules, vasoactive amines, and eicosanoids), cells (including tissue macrophages, dendritic cells, lymphocytes, endothelial cells, fibroblasts, and mast cells) and physiological alterations (<xref ref-type="bibr" rid="B27">Fullerton and Gilroy, 2016</xref>). As indicated below, published data have recently emphasized the significant role of BET proteins in inflammation through at least two independent regulatory mechanisms: NF-&#x3ba;B and modulation of redox metabolism through&#x20;Nrf2.</p>
<p>
<bold>BET and NF-&#x3ba;B signaling.</bold> The nuclear factor-&#x3ba;B (NF-&#x3ba;B) transcription factor family plays a critical role in inflammation and cancer, consisting of five different DNA-binding proteins that form a variety of homo- or heterodimers: p50 (also known as NF-&#x3ba;B1), p52 (also known as NF-&#x3ba;B2), p65 (also known as RelA), cRel and RelB (<xref ref-type="bibr" rid="B30">Ghosh and Hayden, 2008</xref>; <xref ref-type="bibr" rid="B27">Fullerton and Gilroy, 2016</xref>; <xref ref-type="bibr" rid="B11">Campbell et&#x20;al., 2021</xref>). NF-&#x3ba;B dimers bind to NF-&#x3ba;B sites at promoters or enhancers of target genes, and their transcription is regulated through the recruitment of co-activators and co-repressors (<xref ref-type="bibr" rid="B30">Ghosh and Hayden, 2008</xref>). Inflammatory stimuli activate signal transduction pathways (e.g., upon binding of LPS to toll-like receptor TLR4) that trigger NF-kB&#x2019;s nuclear translocation, leading to the activation of inflammatory gene transcription (<xref ref-type="bibr" rid="B30">Ghosh and Hayden, 2008</xref>). NF-&#x3ba;B-mediated gene expression regulates the production of inflammatory mediators, cell proliferation and survival, development and differentiation of T&#x20;cells, and maturation of dendritic cells (<xref ref-type="bibr" rid="B75">Taniguchi and Karin, 2018</xref>). Not surprisingly, dysregulation of NF-&#x3ba;B signaling significantly contributes to many inflammation-associated diseases. Consequently, the interaction between BET proteins and the NF-&#x3ba;B pathway has been a focus of intensive research exploring BET molecular mechanisms and pharmacological targeting.</p>
<p>Recent work has revealed that BET inhibitors potently suppress the LPS-induced inflammatory response, which may be related to a direct interaction between BRD4 and NF-&#x3ba;B (<xref ref-type="bibr" rid="B36">Huang et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B56">Nicodeme et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B10">Brown et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B32">Hah et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B14">Chen et&#x20;al., 2016</xref>). BET inhibition by I-BET in macrophage cells significantly suppresses LPS-induced inflammatory gene transcription (<xref ref-type="bibr" rid="B36">Huang et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B56">Nicodeme et&#x20;al., 2010</xref>). BRD4 increases transcriptional activation of NF-&#x3ba;B and the expression of a subset of NF-&#x3ba;B-regulated inflammatory genes in a process dependent on the binding to acetylated lysine-310 on p65. In contrast, the direct interaction of BRD4 with acetylated NF-&#x3ba;B subunit p65 through twin acetyl-lysine recognizing BDs of BRD4 is required for NF-&#x3ba;B transactivation. In addition to the direct interactions between BRD4 and NF-&#x3ba;B, BRD4 directly recruits cyclin-dependent kinase-9 (CDK9) to phosphorylate RNA polymerase II and facilitate the transcription of NF-&#x3ba;B target genes (<xref ref-type="bibr" rid="B36">Huang et&#x20;al., 2009</xref>). Another <italic>in vivo</italic> study showed that NF-&#x3ba;B formed super-enhancers to promote rapid pro-inflammatory gene expression in a BET BD-dependent manner (<xref ref-type="bibr" rid="B10">Brown et&#x20;al., 2014</xref>). JQ1 was shown to inhibit H. <italic>pylori-</italic>induced interaction between BRD4 and p65 and the recruitment of BRD4 and RNA polymerase II to the promoter and enhancer regions of inflammatory genes (<xref ref-type="bibr" rid="B14">Chen et&#x20;al., 2016</xref>). Another report utilizing a rat spinal cord injury model, JQ1 suppressed NF-&#x39a;B signaling activation and reduced the expression level of pro-inflammatory cytokines in microglia (<xref ref-type="bibr" rid="B76">Wang et&#x20;al., 2019</xref>). Thus, BRD4 has been considered as a critical transcriptional regulator of NF-&#x3ba;B&#x2013;dependent inflammatory gene expression.</p>
<p>A recent <italic>in vivo</italic> genetic study showed that, by modulating the translation of I&#x3ba;B&#x3b1; <italic>via</italic> the Mnk2-eIF4E pathway, BRD4 critically participates in the control of NF-&#x3ba;B&#x2013;dependent inflammatory gene expression (<xref ref-type="bibr" rid="B3">Bao et&#x20;al., 2017</xref>). A key observation is that BRD4 absence in myeloid-lineage cells led to enhanced expression of MAP kinase-interacting serine/threonine-protein kinase 2 (Mknk2) and activation of eukaryotic translation initiation factor 4E (eIF4E) after LPS stimulation, enhancing translation of I&#x3ba;B&#x3b1;, the negative regulator of NF-&#x3ba;B. The newly synthesized I&#x3ba;B&#x3b1; enters the nucleus and inhibits the binding of NF-&#x3ba;B to the promoter region of inflammatory genes, eventually leading to reduced inflammatory gene expression. Interestingly, the BET inhibitor, I-BET, prevents the binding of CREB-binding protein (CBP) to the promoter of IL-6 and consequently selectively regulates IL-6 production without affecting p65, suggesting the possible direct regulatory role of BET inhibition on inflammatory gene expression (<xref ref-type="bibr" rid="B4">Barrett et&#x20;al., 2014</xref>).</p>
<p>
<bold>BET and Nrf2 Signaling.</bold> The transcription factor Nrf2 is a master regulator of redox balance, inflammation, cell stress response, metabolism, and protein homeostasis (<xref ref-type="bibr" rid="B18">Cuadrado et&#x20;al., 2019</xref>). In response to stress, the Nrf2 protein is released from Keap1-mediated repression. The accumulated Nrf2 translocates into the nucleus and binds to the antioxidant response element (ARE), activating multiple cytoprotective genes (<xref ref-type="bibr" rid="B50">Ma, 2013</xref>; <xref ref-type="bibr" rid="B42">Kumar et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B72">Suzuki and Yamamoto, 2015</xref>; <xref ref-type="bibr" rid="B74">Taguchi and Yamamoto, 2017</xref>; <xref ref-type="bibr" rid="B7">Bellezza et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B81">Yamamoto et&#x20;al., 2018</xref>). To date, more than 250 Nrf2 target genes have been identified that contain the ARE in their promoter regulatory regions (<xref ref-type="bibr" rid="B50">Ma, 2013</xref>; <xref ref-type="bibr" rid="B17">Cuadrado et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B81">Yamamoto et&#x20;al., 2018</xref>). Pathological levels of reactive oxygen species (ROS) accumulation that may impair redox signaling are closely associated with inflammation. ROS act as crucial signaling molecules during inflammation and likewise induce direct injury to the inflamed tissue. Mitochondrial dysfunction and overactivation of NADPH oxidase cause enhanced ROS production in inflammatory cells, thus activating the inflammasome and ultimately resulting in tissue and organ damage (<xref ref-type="bibr" rid="B48">Lopez-Armada et&#x20;al., 2013</xref>).</p>
<p>Interestingly, both BET and Nrf2 play critical roles in inflammation and therefore are considered promising drug targets. However, the understanding of the regulatory interplay between BET and Nrf2 signaling remains incomplete. As epigenetic readers, BET proteins interact with acetylated lysine residues on histone or non-histone proteins that recognize multiple transcriptional regulators, eventually activating or repressing gene transcription (<xref ref-type="bibr" rid="B16">Cochran et&#x20;al., 2019</xref>), suggesting the possible regulatory role of BET on Nrf2 signaling (<xref ref-type="bibr" rid="B12">Chatterjee and Bohmann, 2018</xref>).</p>
<p>Multiple studies utilizing <italic>in&#x20;vitro</italic> oxidative stress models investigated the effects of BET knockdown by siRNA or JQ1 on oxidative damage and the induction of Nrf2 signaling and its target antioxidant genes. In response to H<sub>2</sub>O<sub>2</sub> stimulus, BRD4 knockdown or BRD4 inhibition by JQ1 suppressed oxidative damage in cultured rat chondrocytes, as assessed by the reduction in ROS production, malondialdehyde content, and the increase in the activity of the antioxidant proteins superoxide dismutase (SOD), catalase, and glutathione peroxidase. These protective effects were accompanied by increased protein levels of Nrf2 and its target heme oxygenase-1 (HO1) (<xref ref-type="bibr" rid="B1">An et&#x20;al., 2018</xref>). Following H<sub>2</sub>O<sub>2</sub> exposure, BRD4 knockdown or JQ1 decreased ROS production in human embryonic kidney (HEK) 293T&#x20;cells (<xref ref-type="bibr" rid="B38">Hussong et&#x20;al., 2014</xref>), trophoblast cells (<xref ref-type="bibr" rid="B79">Wu et&#x20;al., 2021</xref>), and primary neurons (<xref ref-type="bibr" rid="B84">Zhang and Xu, 2020</xref>), as well as enhanced Nrf2 activation (<xref ref-type="bibr" rid="B84">Zhang and Xu, 2020</xref>; <xref ref-type="bibr" rid="B79">Wu et&#x20;al., 2021</xref>) and HO1 expression (<xref ref-type="bibr" rid="B38">Hussong et&#x20;al., 2014</xref>). In TGF&#x3b2;-stimulated corneal myofibroblast, JQ1 attenuated ROS accumulation, accompanied by increased Nrf2 nuclear translocation and its target antioxidant genes NQO1 and SOD2 expression (<xref ref-type="bibr" rid="B60">Qu et&#x20;al., 2018</xref>). Similarly, in TGF-&#x3b2;-stimulated primary human pulmonary fibroblasts, JQ1 attenuated ROS production and rectified the balance between the prooxidant gene NADPH oxidase (NOX4) and the antioxidant gene SOD2, and increased Nrf2 activity (<xref ref-type="bibr" rid="B71">Stock et&#x20;al., 2019</xref>). In podocytes exposed to high-glucose, BRD4 knockdown or JQ1 repressed ROS production and markedly activated Nrf2 signaling with associated suppression of Keap1 (<xref ref-type="bibr" rid="B86">Zuo et&#x20;al., 2019</xref>). In cultured THP-1 human monocytic cells, knockdown of BRD2 and BRD4 or JQ1 treatment upregulated the expression of the Nrf2 target antioxidant genes HO1, NQO1, and glutamate-cysteine ligase catalytic subunit (<xref ref-type="bibr" rid="B54">Michaeloudes et&#x20;al., 2014</xref>). Importantly, this BET inhibition-mediated protection can be abolished, at least partially, by Nrf2 knockdown (<xref ref-type="bibr" rid="B1">An et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B86">Zuo et&#x20;al., 2019</xref>). Consistent with the findings above, two recent <italic>in vivo</italic> studies also support the regulatory role of BET proteins in Nrf2 signaling (<xref ref-type="bibr" rid="B46">Liang et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B84">Zhang and Xu, 2020</xref>). JQ1 treatment significantly improved cognitive performance and increased the expression levels of hippocampal Nrf2 and HO1 in STZ-induced diabetic rats, accompanied by decreased oxidative stress and neuroinflammation (<xref ref-type="bibr" rid="B46">Liang et&#x20;al., 2018</xref>). <italic>In vivo</italic> BRD4 knockdown by siRNA ameliorated oxidative damage and inhibited macrophage infiltration into the sciatic nerve after vincristine exposure (<xref ref-type="bibr" rid="B84">Zhang and Xu, 2020</xref>). The inhibitory role of BET proteins on Nrf2 signaling was also reported in Drosophila (<xref ref-type="bibr" rid="B13">Chatterjee et&#x20;al., 2016</xref>). BET proteins are recruited to ARE elements of gene promoters for NQO1 (<xref ref-type="bibr" rid="B54">Michaeloudes et&#x20;al., 2014</xref>) and HO1 (<xref ref-type="bibr" rid="B38">Hussong et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B54">Michaeloudes et&#x20;al., 2014</xref>) and bind to the <italic>NOX4</italic> promoter (<xref ref-type="bibr" rid="B71">Stock et&#x20;al., 2019</xref>). JQ1 was shown to dramatically suppress the transcription of Keap1 and thereby increasing the expression of Nrf2 target antioxidant genes in primary acute myeloid leukemia cells (<xref ref-type="bibr" rid="B37">Huang et&#x20;al., 2018</xref>). miRNA-146b-5p (miR-146b-5p) was shown to protect against oxygen/glucose deprivation-induced injury of oligodendrocyte precursor cells through regulatory mechanisms of Nrf2, while BRD4 seems to participate in this Nrf2-dependent protection (<xref ref-type="bibr" rid="B44">Li et&#x20;al., 2019</xref>). In summary, several lines of evidence have revealed the protective role of BET inhibition against oxidative damage through upregulating the Nrf2 pathway, suggesting that BET protein inhibits Nrf2 signaling. As such, BET proteins have been identified as Nrf2 signaling repressors, which involves Keap1-dependent regulation (<xref ref-type="bibr" rid="B37">Huang et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B86">Zuo et&#x20;al., 2019</xref>) and Keap1-independent regulation (<xref ref-type="bibr" rid="B38">Hussong et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B54">Michaeloudes et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B13">Chatterjee et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B44">Li et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B71">Stock et&#x20;al., 2019</xref>). Such discoveries contribute to understanding the complex biology of BET proteins and their crosstalk with the Nrf2 pathway.</p>
</sec>
<sec id="s5">
<title>Contribution of BET Proteins to CNS Disorders</title>
<p>Neuroinflammation is a significant player in the pathogenesis and progression of multiple neurological conditions, and there is a growing interest in understanding the role of BET proteins in modulating the onset and evolution of CNS inflammation (<xref ref-type="bibr" rid="B70">Sofroniew, 2015</xref>; <xref ref-type="bibr" rid="B73">Sweeney et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B69">Singh and Sartor, 2020</xref>; <xref ref-type="bibr" rid="B55">Mishra et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B59">Psenicka et&#x20;al., 2021</xref>).</p>
<p>
<bold>Stroke.</bold> Recent studies utilizing permanent and transient cerebral ischemia models have revealed the functional benefit of BET inhibition on infarct volume and neurobehavioral deficits after ischemia through inflammatory regulation and NF-&#x3ba;B pathway (<xref ref-type="bibr" rid="B47">Liu et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B19">DeMars et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B85">Zhou et&#x20;al., 2019</xref>). In a permanent cerebral ischemia study using aged mice (18&#x2013;20&#xa0;months old), BET blockade by dBET1, a PROTAC, significantly reduces infarct volume at 48&#xa0;h after stroke. dBET1 treatment improves neurological function at 24 and 48&#xa0;h after the ischemic insult, as assessed using the open field test, adhesive removal test, and nesting behavior (<xref ref-type="bibr" rid="B19">DeMars et&#x20;al., 2019</xref>). Of note, such beneficial effect of BET disruption on stroke outcomes is associated with reduced levels of brain pro-inflammatory mediators including TNF-&#x3b1;, CXCL1, CXCL10, CCL2, and matrix metalloproteinase-9. At 24&#xa0;h after transient cerebral ischemia (2&#xa0;h ischemia/reperfusion), JQ1-treated rats exhibit a marked reduction in neurological deficits, infarct volume, and expression of pro-inflammatory mediators IL-1&#x3b2;, IL-6, IL-17, and TNF-&#x3b1; in the ischemic brain (<xref ref-type="bibr" rid="B47">Liu et&#x20;al., 2017</xref>). JQ1 remarkably attenuates nuclear NF-&#x3ba;B p65 levels and upregulates cytosolic I&#x3ba;B, indicating the suppression of NF-&#x3ba;B signaling by BET inhibition during ischemic injury. After transient cerebral ischemia injury (1&#xa0;h ischemia and 3&#xa0;days of reperfusion), JQ1 significantly reduces infarct volume, neurological deficit score, and glial activation in ischemic mice, along with significantly decreased levels of pro-inflammatory factors IL-1&#x3b2;, IL-6, IL-18, and TNF-&#x3b1; (<xref ref-type="bibr" rid="B85">Zhou et&#x20;al., 2019</xref>).</p>
<p>
<bold>Spinal cord injury.</bold> The pathophysiology of spinal cord injury (SCI) involves irreversible primary damage and reversible secondary injury. As a significant contributor to damage, inflammation has been considered a promising target to ameliorate secondary injury. BRD2, BRD3, and BRD4 mRNA are expressed in the uninjured/injured mouse spinal cord (<xref ref-type="bibr" rid="B62">Rudman et&#x20;al., 2018</xref>). JQ1 dramatically decreases pro-inflammatory cytokine expression (such as TNF-&#x3b1;, IL-1&#x3b2;, IL-6, CCL5, and CCL2) and leukocyte recruitment to the injury site 3&#xa0;days after injury. However, this benefit does not lead to improvements in locomotor activity or lesion size (<xref ref-type="bibr" rid="B62">Rudman et&#x20;al., 2018</xref>). In a rat SCI model, BRD4 expression correlates with levels of pro-inflammatory cytokines (<xref ref-type="bibr" rid="B76">Wang et&#x20;al., 2019</xref>). BRD4 inhibition by JQ1 represses the levels of pro-inflammatory cytokines in microglia both <italic>in&#x20;vitro</italic> and <italic>in vivo</italic>, eventually leading to improvement in functional recovery, structural integrity, and neuronal loss (<xref ref-type="bibr" rid="B76">Wang et&#x20;al., 2019</xref>). JQ1 reduces pro-inflammatory and enhances anti-inflammatory cytokine production in an SCI model in mice (<xref ref-type="bibr" rid="B64">Sanchez-Ventura et&#x20;al., 2019</xref>). At 4&#xa0;h post-lesion, JQ1 significantly reduces the expression of the pro-inflammatory cytokines IL-1&#x3b2;, IL-6, and TNF-&#x3b1;. Strikingly, IL-1&#x3b2; remains downregulated for over 72&#xa0;h. Overall, JQ1 treatment decreases chemokine levels, whereas significant differences are observed for CCL2 at 72&#xa0;h compared to vehicle controls (<xref ref-type="bibr" rid="B64">Sanchez-Ventura et&#x20;al., 2019</xref>). Moreover, prolonged therapy with JQ1 promotes functional recovery for over 28&#xa0;days (<xref ref-type="bibr" rid="B64">Sanchez-Ventura et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B45">Li et&#x20;al., 2020</xref>), reduces neuropathic pain, and decreases microglia/macrophages reactivity (<xref ref-type="bibr" rid="B64">Sanchez-Ventura et&#x20;al., 2019</xref>).</p>
<p>
<bold>Multiple sclerosis</bold> <bold>(MS)</bold>. MS is an autoimmune and neurodegenerative disorder characterized by chronic inflammation, demyelination, and loss of axons and neurons (<xref ref-type="bibr" rid="B15">Chu et&#x20;al., 2018</xref>). Using an experimental autoimmune encephalomyelitis (EAE) mouse model of MS, limited treatment with the BET inhibitor I-BET-762 inhibits the ability of T helper type 1-differentiated 2D2 T&#x20;cells to induce neuroinflammation <italic>in vivo</italic> during the early priming phase (<xref ref-type="bibr" rid="B2">Bandukwala et&#x20;al., 2012</xref>). Treatment with the BET inhibitor I-BET151 decreases the early clinical symptoms, which depends on cytokine production in the EAE mouse model (<xref ref-type="bibr" rid="B4">Barrett et&#x20;al., 2014</xref>). BET BD2-selective inhibitor RVX-297 maintains anti-inflammatory properties and has therapeutic effects in preclinical EAE models of acute inflammation and autoimmunity (<xref ref-type="bibr" rid="B39">Jahagirdar et&#x20;al., 2017</xref>).</p>
<p>
<bold>Seizures/Epilepsy.</bold> It has been suggested that BRD2 gene variation confers an increased risk of juvenile myoclonic epilepsy, a common form of generalized epilepsy that starts in adolescence (<xref ref-type="bibr" rid="B57">Pal et&#x20;al., 2003</xref>). A developmental decrease in parvalbumin-positive neurons precedes the onset of increased flurothyl-induced seizure susceptibility in the Brd2<sup>&#x2b;/&#x2212;</sup> mouse model of juvenile myoclonic epilepsy and likely contributes to the clinical manifestations of this syndrome (<xref ref-type="bibr" rid="B53">McCarthy et&#x20;al., 2020</xref>).</p>
<p>
<bold>Alzheimer&#x2019;s Disease (AD).</bold> AD is a debilitating neurodegenerative disease characterized by amyloid plaques, neurofibrillary tangles, and the presence of chronic neuroinflammation (<xref ref-type="bibr" rid="B51">Magistri et&#x20;al., 2016</xref>). Recent reports suggest the great potential of BET inhibition for AD and other disorders associated with neuroinflammation. JQ1 treatment reduces the expression of several pro-inflammatory mediators, including IL-1&#x3b2;, IL-6, TNF-&#x3b1;, CCL2, NOS2, PTGS2, and tau phosphorylation at Ser396 in the hippocampus and frontal cortex of the 3xTg model of Alzheimer&#x2019;s Disease (<xref ref-type="bibr" rid="B51">Magistri et&#x20;al., 2016</xref>). However, this benefit does not lead to ameliorating learning and memory deficits in 7-month-old 3xTg mice (<xref ref-type="bibr" rid="B51">Magistri et&#x20;al., 2016</xref>). In either wild-type animals or the APP/PS1 mouse AD model, JQ1 enhances cognitive performance and long-term potentiation (<xref ref-type="bibr" rid="B8">Benito et&#x20;al., 2017</xref>). Further investigation revealed that JQ1 elicits a hippocampal gene expression profile related to ion channel activity and transcription and DNA repair (<xref ref-type="bibr" rid="B8">Benito et&#x20;al., 2017</xref>).</p>
</sec>
<sec id="s6">
<title>Conclusions and Future Perspectives</title>
<p>By using genetic and pharmacological approaches, including selective BETis and PROTACs, it is becoming clear that BET proteins play a fundamental role in regulating complex inflammatory pathways and are functionally linked to multiple CNS diseases associated with inflammation. However, our understanding of BET regulation and activity and its underlying mechanism(s) is limited. Most BETis are non-selective BD inhibitors, which hampers our ability to pinpoint the specific role of each BET protein in disease states. Studies with BET PROTACs and <italic>in vivo</italic> genetic methods to selectively target BET proteins in different cell types are now at a very early stage of development. Significant computational and experimental studies are needed to obtain a more dynamic global view of BET-mediated gene regulation. Of note, studies comparing how BET-dependent regulation changes between physiological and pathological conditions might confer new insights into disease mechanisms and the potential identification of novel targets for future therapeutic development.</p>
</sec>
</body>
<back>
<sec id="s7">
<title>Author Contributions</title>
<p>LL and EC-J discussed and prepared the outline of the minireview. LL wrote the first draft of the manuscript and prepared the figure. CY edited the text and gave input on the figure. EC-J reviewed and edited the final version of the manuscript.</p>
</sec>
<sec id="s8">
<title>Funding</title>
<p>This work was supported by National Institutes of Health grant R01NS109816 (to&#x20;EC-J).</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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