<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" article-type="research-article" dtd-version="2.3" xml:lang="EN">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiomes</journal-id>
<journal-title>Frontiers in Microbiomes</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiomes</abbrev-journal-title>
<issn pub-type="epub">2813-4338</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/frmbi.2024.1381270</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiomes</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Dynamic interplay between soil microbial communities, enzyme activities, and pear quality across planting years</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" equal-contrib="yes">
<name>
<surname>Pang</surname>
<given-names>Xiaomin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2648114"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author" equal-contrib="yes">
<name>
<surname>Jia</surname>
<given-names>Miao</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2689715"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Ying</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Meihui</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Miao</surname>
<given-names>Pengyao</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Cheng</surname>
<given-names>Weiting</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhou</surname>
<given-names>Zewei</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Qi</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/391343"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ye</surname>
<given-names>Jianghua</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/resources/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Jiayu</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1877650"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Wang</surname>
<given-names>Haibin</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1830296"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Jia</surname>
<given-names>Xiaoli</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2232714"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/resources/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Center for Information Technology and Laboratory Management, Wuyi University</institution>, <addr-line>Wuyishan</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>College of Tea and Food Science, Wuyi University</institution>, <addr-line>Wuyishan</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>College of Horticulture, Fujian Agriculture and Forestry University</institution>, <addr-line>Fuzhou</addr-line>, <country>China</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>College of Resources and Environment, Fujian Agriculture and Forestry University</institution>, <addr-line>Fuzhou</addr-line>, <country>China</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>College of Life Sciences, Fujian Agriculture and Forestry University</institution>, <addr-line>Fuzhou</addr-line>, <country>China</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>Institute of Resources, Environment and Soil Fertilizer, Fujian Academy of Agricultural Sciences/Fujian Key Laboratory of Plant Nutrition and Fertilizer</institution>, <addr-line>Fuzhou</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Amalia Roca Hern&#xe1;ndez, University of Granada, Spain</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Adriana Giongo, Julius K&#xfc;hn-Institut - Braunschweig, Germany</p>
<p>Xiang Shen, Shandong Agricultural University, China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Xiaoli Jia, <email xlink:href="mailto:jiaxl2010@126.com">jiaxl2010@126.com</email>; Haibin Wang, <email xlink:href="mailto:w13599084845@sina.com">w13599084845@sina.com</email>
</p>
</fn>
<fn fn-type="equal" id="fn003">
<p>&#x2020;These authors have contributed equally to this work</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>10</day>
<month>05</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>3</volume>
<elocation-id>1381270</elocation-id>
<history>
<date date-type="received">
<day>03</day>
<month>02</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>22</day>
<month>04</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Pang, Jia, Zhang, Chen, Miao, Cheng, Zhou, Zhang, Ye, Li, Wang and Jia</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Pang, Jia, Zhang, Chen, Miao, Cheng, Zhou, Zhang, Ye, Li, Wang and Jia</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Few studies have been reported on the effect of planting years on fruit quality and soil of pear trees. In this study, four planting years (T5, T20, T30, and T40) of Cuiguan pears were used to analyze fruit quality, rhizosphere soil enzymes, and microbial diversity of pear trees, and their correlations. The results showed that the content of sucrose, reducing sugar and ascorbic acid in Cuiguan Pear showed a tendency of increasing and then decreasing with the increase of planting years, in which the highest content was found in 20- and 30-year-old fruits, and the highest content of total acid was found in 5-year-old fruits. Rhizosphere soil enzyme activities varied with planting year, with the highest protease activity in 20-year-old soil, phosphatase and urease in 30-year-old soil, polyphenol oxidase in 5-year-old soil, and sucrase in 40-year-old soil. The microbial diversity index and the number of OTUs showed an increasing and decreasing trend with the increase of planting years. Among the top 11 bacteria in pear rhizosphere soil average relative abundance, with <italic>Bradyrhizobium</italic> decreasing in relative abundance at the peak pear fruiting stages (T20 and T30), while <italic>Acidothermus</italic> showed an increasing trend in relative abundance with increasing planting years. RDA analysis showed that there were differences in the microbial community structure of pear trees at different planting years, and that both sucrose and reducing sugar contents in pears were positively correlated with T20 and T30, ascorbic acid content was positively correlated with T40, whereas the total acid content was positively correlated with T5, and that T20 was positively correlated with soil protease and phosphate mono esterase activities, and that T30 was positively correlated with polyphenol oxidase and urease activities, whereas T40 was positively correlated with sucrase activity. In summary, with the increase of planting years, changes in soil microbial community structure and soil enzyme activity have a significant impact on pear quality formation, and the results of the study provide a theoretical basis for scientific management of pear orchards.</p>
</abstract>
<kwd-group>
<kwd>pear</kwd>
<kwd>planting year</kwd>
<kwd>quality</kwd>
<kwd>soil enzymes</kwd>
<kwd>rhizosphere soil</kwd>
<kwd>microbial diversity</kwd>
</kwd-group>
<counts>
<fig-count count="7"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="47"/>
<page-count count="11"/>
<word-count count="5392"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Environmental Microbiomes</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Pear is one of the most important temperate fruit tree species with high economic value (<xref ref-type="bibr" rid="B8">Draga et&#xa0;al., 2023</xref>). China is one of the main areas of pear production, and it is the third most important fruit in China (<xref ref-type="bibr" rid="B15">He et&#xa0;al., 2022</xref>). Cuiguan pear (<italic>Pyrus pyrifolia</italic>) is a famous early ripening pear variety in China, which is widely planted in southern China (<xref ref-type="bibr" rid="B22">Li et&#xa0;al., 2022</xref>). Because of its thin skin, crisp and juicy flesh, fresh taste, thick and sweet juice is loved by people.</p>
<p>The quality of pears is influenced by various aspects, such as planting management practices, growing environment and tree age (<xref ref-type="bibr" rid="B7">Doornbos et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B45">Zhang et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B26">Musacchi et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B23">Liu et&#xa0;al., 2023</xref>; <xref ref-type="bibr" rid="B44">Zhang et&#xa0;al., 2023</xref>). During growth and development, plants obtain nutrients from the soil while secreting a variety of root secretions. Relevant studies have shown that plant root secretions change during different growth and development periods (<xref ref-type="bibr" rid="B37">Sun&#xa0;et&#xa0;al., 2021</xref>). Therefore, this study hypothesized that with the increase of planting years, changes in the root secretion of pear trees altered the soil environment, which in turn affected the uptake of nutrients by pear trees, and ultimately affected the quality formation of pears.</p>
<p>Soil enzymes are important biocatalysts in soils and are very sensitive to environmental factors and are therefore considered important biological indexes of soil quality (<xref ref-type="bibr" rid="B40">Wang et&#xa0;al., 2020</xref>). Soil enzymes, which are mainly from microorganisms, are constantly synthesized, accumulated, inactivated and/or decomposed in the&#xa0;soil, while they also play an important role in nutrient cycling&#xa0;and&#xa0;are therefore of great importance to agriculture (<xref ref-type="bibr" rid="B35">Samuel&#xa0;et&#xa0;al., 2008</xref>). <xref ref-type="bibr" rid="B6">Chen et&#xa0;al. (2020)</xref> showed that long-term cover increased pear soil polyphenol oxidase activity, decreased soil phosphomonoesterase, urease and sucrase activities, and was detrimental to soil nutrient cycling. <xref ref-type="bibr" rid="B19">Kang et&#xa0;al. (2021)</xref> showed that the application of organic amendments can significantly increase the activity of soil enzymes related to carbon, nitrogen and phosphorus cycles in pear orchard soils and improve the soil environment. At present, the research on soil enzymes of pear trees mainly focuses on fertilization management and agronomic cultivation, and there is a lack of research on the effect of planting years on soil enzymes of pear trees.</p>
<p>Bacteria growing in the rhizosphere have a significant impact on plant growth, nutrition and health (<xref ref-type="bibr" rid="B28">Ole&#x144;ska et&#xa0;al., 2020</xref>). The&#xa0;aggregation of rhizosphere bacterial communities is the result&#xa0;of selection by plant and soil environmental factors (<xref ref-type="bibr" rid="B25">Mendes&#xa0;et&#xa0;al., 2014</xref>). Meanwhile, the composition of the rhizosphere soil bacterial community is the result of long-term competition for nutrients and other resources by plants (<xref ref-type="bibr" rid="B17">Jiang et&#xa0;al., 2017</xref>). <xref ref-type="bibr" rid="B30">Pang et&#xa0;al. (2021)</xref> has reported that long-term continuous cropping of sugarcane results in a significant decrease in the number of bacteria associated with the function of nitrogen and sulfur cycling in rhizosphere soil, and an increase in the number of pathogenic bacteria. <xref ref-type="bibr" rid="B5">Arafat et&#xa0;al. (2017)</xref> found that the rhizosphere bacterial diversity of tea trees decreases significantly with the increase in the number of planting years. <xref ref-type="bibr" rid="B42">Yang et&#xa0;al. (2022)</xref> suggested that ancient tea plantations had higher microbial abundance and diversity and a more stable population structure than modern tea plantations. It can be seen that the planting year has a significant effect on soil microbial community structure of the rhizosphere. However, which microorganisms are associated with soil nutrient cycling as planting years increase? And how do these associated microorganisms relate to the fruit quality of pear trees? Based on this, this study took pear trees with different planting years as the research object, and analyzed the effects of planting years on fruit quality, rhizosphere soil enzyme activities, microbial communities and metabolic pathways of pear trees. At the same time, key microorganisms and their metabolic pathways were screened to further analyze the effects of key microorganisms on pear quality formation. The results of the study are expected to provide an important theoretical basis for pear orchard management.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Experimental sites</title>
<p>The experimental site was located in Xikou Town, Shouning County, Fujian Province (116&#xb0;48&#x2032;34&#x2033;E, 26&#xb0;50&#x2032;38&#x2033;N). Cuiguan pear trees planted in the mountainous area with 5, 20, 30 and 40 planting years, labeled T5, T20, T30 and T40, respectively, were used for the study. The first pear trees were planted in 1982. The four pear orchards (T5, T20, T30, T40) have a planting area of 11 ha (about 7,200 trees), 20 ha (about 13,000 trees), 18 ha (about 12,000 trees), and 10 ha (about 6,500 trees). The average annual temperature of the four tea plantations is 18.8&#xb0;C, the rainfall is 1911 mm, and the altitude is 600-650m. Pear trees of four different planting years were consistent in their daily management practices such as fertilization, weeding and watering.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Sample collection</title>
<p>Rhizosphere soil and fruit were collected from pear trees of four planting years using a 5-point sampling method. Briefly, in the pear orchard, a total of five robust pear trees were selected in the east, west, south, north and center, respectively, and excavated the roots of the pear tree with a shovel, shook off the soil on the root with your hand, and collected the soil that fell, that is, rhizosphere soil (shake-down method). After picking out the roots remaining in the rhizosphere soil, the soil was mixed and placed in an ice box and brought back to the laboratory to be stored in a -80&#xb0;C refrigerator for subsequent index measurements. At the same time, two pears were randomly selected from each of the five pear trees, and a total of 10 pears were collected for quality index determination in each planting year.</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Fruit quality analysis</title>
<p>Fruit quality was determined by sucrose, reducing sugar, ascorbic acid and total acid content. Sucrose content was determined with reference to GB5009.8-2016 (<xref ref-type="bibr" rid="B13">GAQS, 2016b</xref>), pears were crushed and mixed, 10 g of homogenized liquid was taken to a 100 mL colorimetric tube, 50 mL of distilled water was added, 5 mL of zinc acetate solution and 5 mL of potassium ferricyanide solution were added, mixed well and ultrasonically for 30 min, and then fixed volume to 100 mL. The fixed solution was filtered and then determined using high performance liquid chromatography for sucrose content. Reducing sugar content was determined with reference to GB5009.7-2016 (<xref ref-type="bibr" rid="B12">GAQS, 2016a</xref>), pears were crushed and mixed, 25 g of homogenized liquid was taken into a 250 mL volumetric flask, 50 mL of distilled water was added, mixed, and then 10 mL of alkaline copper tartrate solution and 4 mL of sodium hydroxide solution were added, mixed, and fixed. Allow to stand for 30 minutes and then filter. The filtrate was used to determine reducing sugar content by potassium permanganate titration. Ascorbic acid (Vc) content was determined with reference to GB5009.86-2016 (<xref ref-type="bibr" rid="B14">GAQS, 2016c</xref>), pears were crushed and mixed, and 2 g homogenized liquid was taken into a 50 mL volumetric flask and fixed to 50 mL with 20 g/L metaphosphoric acid solution. All the solution was transferred to a centrifuge tube and sonicated for 5 min, then centrifuged at 4000 r/min for 5 min, and the supernatant was taken through a 0.45 &#x3bc;m filter membrane, and the Vc content in the filtrate was determined using high performance liquid chromatography. The total acid content was determined with reference to GBT12456-2008 (<xref ref-type="bibr" rid="B11">GAQS, 2008</xref>), the pears were crushed and mixed, 200 g of homogenized liquid was taken and mixed with equal amount of water. 10 g of the above solution was taken and transferred to a 250 mL volumetric flask with distilled water at 80&#xb0;C, followed by a boiling water bath for 30 min, removed, cooled to room temperature and then concentrated to 250 mL. The solution was filtered and the filtrate was titrated with a 0.1 mol/L standard solution of sodium hydroxide.</p>
</sec>
<sec id="s2_4">
<label>2.4</label>
<title>Determination of soil enzyme activity</title>
<p>Soil samples were mixed well, passed through a 2 mm sieve, and soil enzyme activity was determined using <xref ref-type="bibr" rid="B21">Li et&#xa0;al. (2008)</xref>. Determination of protease activity: 5 g of fresh soil was added to 25 mL of casein matrix solution (5 g/L), then 1 mL of toluene was added and the solution was incubated at 38&#xb0;C for 48 h. Then, 25 mL of 10% trichloroacetic acid was added, and the solution was allowed to stand for 30 min and then filtered. Folin colorimetry was used and the absorbance at 680 nm was measured. The experiment was repeated three times. Determination of polyphenol oxidase activity: 1 g of soil was added to 4 mL of citrate-phosphate buffer (pH 4.5), followed by 10 mL of 1% pyrogallol and mixed well. The solution was incubated at 30&#xb0;C for 2 h. After incubation, 35 mL of ether was added and the solution was shaken for 15 min at room temperature and then left to stand. The absorbance of the ether phase was measured at 430 nm. The experiment was repeated three times. Determination of phosphomonoesterase activity: 0.2 mL of toluene, 4 mL of acid phosphatase buffer (pH 6.5) and 1 mL of 4-nitrophenyl disodium phosphate solution were added to 1 g of fresh soil. The solution was incubated at 37&#xb0;C for 1 h. Then 1 mL of 0.5 mol/L calcium chloride and 4 mL of 0.5 mol/L sodium hydroxide were added, mixed well, and centrifuged at 4000 r/min for 5 min, and the absorbance of the supernatant was measured at 400 nm. Determination of urease activity: 2 mL of toluene was added to 10 g of soil and left to stand for 15 min, then 10 mL of urea solution and 20 mL of citrate buffer (pH 6.7) were added and mixed well. After incubation at 38&#xb0;C for 3 h, the solution was fixed to 100 mL with distilled water and filtered. Then 1 mL of filtrate was added to 9 mL of distilled water and 4 mL of sodium phenol. Finally, 3 mL of sodium chlorate solution was added and the solution was made up to 50 mL. The solution was allowed to stand for 20 min and then the absorbance of the solution was measured at 578 nm. The experiment was repeated three times. Determination of sucrase activity: 5 g of fresh soil was added to a beaker containing 15 mL of 8% sucrose solution, 5 mL of phosphate buffer (pH 5.5) and 5 drops of toluene. The solution was mixed homogeneously and incubated at 37&#xb0;C for 24 h. Next, the solution was filtered and 3 mL of 0.5% 3,5-dinitrosalicylic acid was added to 1 mL of the filtrate. The solution was incubated in a boiling water bath for 5 min, then cooled to 25 mL. The absorbance was measured at 508 nm. The experiment was repeated three times.</p>
</sec>
<sec id="s2_5">
<label>2.5</label>
<title>Soil microbial diversity analysis</title>
<sec id="s2_5_1">
<label>2.5.1</label>
<title>Soil DNA extraction and sequencing</title>
<p>Soil DNA was extracted using MoBio PowerSoil DNA isolation kit (Carlsbad, CA, USA). DNA samples were tested for quality by 1% agarose gel electrophoresis and spectrophotometry. Qualified DNA samples were stored at -20&#xb0;C for subsequent use. The primers for amplification of the highly variable V3-V4 region of the bacterial 16S rRNA gene were 338F(5&#x2019;-ACTCCTACGGGAGGCAGCAG-3&#x2019;) and 806R(5&#x2019;-GGACTACHVGGGTWTCTAAT-3&#x2019;) (<xref ref-type="bibr" rid="B10">Fadrosh&#xa0;et&#xa0;al., 2014</xref>). PCR reaction system was 25&#x3bc;L, including 12.5&#x3bc;L of 2&#xd7; Taq PCR MasterMix, 3&#x3bc;L of BSA (2 ng/&#x3bc;L), 2&#x3bc;L of Primer (5&#x3bc;M), 2&#x3bc;L of template DNA, and 5.5&#x3bc;L of ddH2O. The PCR reaction program was as follows: pre-denaturation at 95&#xb0;C for 5 min; denaturation at 95&#xb0;C for 45 s, annealing at 55&#xb0;C for 50 s, extension at 72&#xb0;C for 45 s, 32 cycles, and finally, extension at 72&#xb0;C for 10 min (<xref ref-type="bibr" rid="B43">Yao et&#xa0;al., 2014</xref>). Each sample was repeated three times and the PCR products from the same sample were mixed and detected by 2% agarose gel electrophoresis. PCR products were recovered using the QIAquick Gel Extraction Kit (QIAGEN, Germany) and then eluted with Tris-HCl for quantification using RT-PCR. Sequencing data are stored in NCBI&#x2019;s Sequence Read Archive (SRA) under accession number PRJNA1055603.</p>
</sec>
<sec id="s2_5_2">
<label>2.5.2</label>
<title>Bioinformatics analysis</title>
<p>Raw data were first screened and sequences were removed from consideration if they were shorter than 230 bp, had a low quality score (&#x2264;20), contained ambiguous bases or did not exactly match primer sequences and barcode tags, and were separated using sample-specific barcode sequences. Qualified reads were clustered into operational taxonomic units (OTUs) at a 97% similarity level (<xref ref-type="bibr" rid="B9">Edgar, 2013</xref>) using the Uparse algorithm of Vsearch (v2.7.1) software. The BLAST tool was used to classify all sequences into different taxonomic groups against the Silva138 database (<xref ref-type="bibr" rid="B31">Pruesse et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B41">Willis, 2019</xref>).</p>
<p>QIIME (v1.8.0) was used to generate rarefaction curves and calculate richness and diversity indices based on OTU information. To compare community membership and structure in different samples, a heatmap was generated with the top 20 OTUs using Mothur (<xref ref-type="bibr" rid="B16">Jami et&#xa0;al., 2013</xref>). Based on the results of taxonomic annotation and relative abundance, R (v3.6.0) software was used for bar-plot diagram analysis. To examine the similarity between different samples, clustering analysis and PCA were analyzed by R (v3.6.0) based on OTU information from each sample (<xref ref-type="bibr" rid="B39">Wang&#xa0;et&#xa0;al., 2012</xref>). The evolutionary distances between microbial communities from each sample were calculated using Bray Curtis algorithms and represented as an Unweighted Pair Group Method with Arithmetic Mean (UPGMA) clustering tree describing the dissimilarity (1-similarity) between multiple samples (<xref ref-type="bibr" rid="B18">Jiang et&#xa0;al., 2013</xref>). A Newick-formatted tree file was generated through this analysis. Alpha diversity was applied to analyze microbial diversity, including Chao1, Shannon, and Simpson, which were calculated with Mothur software (version 1.30.1, <ext-link ext-link-type="uri" xlink:href="http://www.mothur.org/">http://www.mothur.org/</ext-link>). A beta-diversity analysis based on the Bray-Curtis dissimilarity matrix was calculated using R 2.13.2 (R Development Core Team) software.</p>
</sec>
</sec>
<sec id="s2_6">
<label>2.6</label>
<title>Data analysis</title>
<p>Variance analysis (ANOVA) and significance analysis were performed using SPSS 20.0 software, and the least significant difference (LSD) test was performed. The relationship between fruit quality and soil enzyme activity was analyzed by Pearson&#x2019;s Correlation Heatmap using the pheatmap package. Orthogonal partial least squares-discriminant analysis (OPLS-DA) based on nonlinear iterative partial least squares was calculated using R 2.13.2 (R Development Core Team) software. Redundancy analysis (RDA) based on Monte Carlo substitution was performed using R 2.13.2 (R Development Core Team) software.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<sec id="s3_1">
<label>3.1</label>
<title>Fruit quality analysis</title>
<p>Analysis of the effect of planting years on the quality of pears showed that (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>), with the increase of planting years, sucrose, reducing sugar and Vc content in pears showed a trend of first increasing and then decreasing, which was manifested as T30 &#x2248; T20 &gt; T40 &gt; T5. T30 and T20 had the highest sucrose, reducing sugar and Vc contents all were significantly higher (<italic>p</italic>&lt;0.05) than T40 and T5. Sucrose, reducing sugar and Vc contents of T40 were significantly higher (<italic>p</italic>&lt;0.05) than those of T5. Total acid content showed T5 &gt; T40 &gt; T20&#x2248; T30, where T5 had the highest total acid content and was significantly higher than the other planting years (<italic>p</italic>&lt;0.05), whereas total acid content of T40 was again significantly higher than that of T20 and T30 (<italic>p</italic>&lt;0.05). It can be seen that the quality of pears is optimal and stable during the peak fruiting period (T20 and T30).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Effect of different planting years on pear quality. T5: 5 planting year, T20: 20 planting year, T30: 30 planting year, T40: 40 planting year. Different lowercase letters represent significant differences at <italic>p</italic> &lt; 0.05.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frmbi-03-1381270-g001.tif"/>
</fig>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Soil enzyme activity analysis</title>
<p>The effect of planting years on soil enzyme activity of pear trees showed (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>) that soil sucrase activity tended to increase with the increase of planting years, which was manifested as T40 &gt; T30 &gt; T5 &#x2248; T20, and the differences between planting years reached the level of significance except for the difference between T5 and T20 (<italic>p</italic>&lt;0.05). With the increase of planting years, soil protease activity showed an increasing and then decreasing trend, which was T20 &gt; T30 &#x2248; T40 &gt; T5. The highest protease activity was found in T20, which was significantly higher than that of T5, T30 and T40 (<italic>p</italic>&lt;0.05). Soil polyphenol oxidase activity showed a decreasing trend with increasing planting years, which was manifested as T5&gt;T20&gt;T30&gt;T40, and there was a significant difference (<italic>p</italic>&lt;0.05) between all planting years. Soil phosphomonoesterase activity showed an increasing trend with increasing planting years, which was manifested as T30&gt;T20&gt;T40&gt;T5, and there were significant differences (<italic>p</italic>&lt;0.05) among all planting years. Soil urease activity showed an increasing trend with increasing planting years, which was manifested as T30&gt;T40&gt;T20&gt;T5, and there were significant differences (<italic>p</italic>&lt;0.05) among all planting years. It can be seen that soil enzyme activities related to the cycling of nitrogen and phosphorus were significantly increased in pear tree soils during the peak fruiting period (T20 and T30), favoring the cycling of these two elements.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Effect of different planting years on enzyme activity in rhizosphere soil of pear tree. T5: 5 planting year, T20: 20 planting year, T30: 30 planting year, T40: 40 planting year. Different lowercase letters represent significant differences at <italic>p</italic> &lt; 0.05.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frmbi-03-1381270-g002.tif"/>
</fig>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Heatmap analysis of correlation networks</title>
<p>Correlation analysis of soil enzyme activity at different planting years showed (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>) that urease and phosphomonoesterase were significantly positively correlated (<italic>p</italic>&lt;0.05). Polyphenol oxidase and sucrase were significantly negatively correlated (<italic>p</italic>&lt;0.05). Analysis of the correlation between fruit quality indexes and soil enzyme activity at different planting years showed (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>) that polyphenol oxidase, phosphomonoesterase and urease were all significantly positively correlated (<italic>p</italic>&lt;0.05) with four quality indexes (sucrose, reducing sugar, ascorbic acid and total acid). Protease was significantly and positively correlated (<italic>p</italic>&lt;0.05) with reducing sugar. Sucrase was negatively correlated with the four quality indexes, but none was significant. It can be seen that soil enzyme activities were closely related to fruit quality indexes.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Analysis of correlation network between pear fruit quality and soil enzyme in different planting years. SA, sucrase; PA, protease; POA, polyphenol oxidase; PSA, phosphomonoesterase; UA, urease; SU, sugar; RS, seducing sugar; VC, vitamin C; TA, total acid.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frmbi-03-1381270-g003.tif"/>
</fig>
</sec>
<sec id="s3_4">
<label>3.4</label>
<title>Soil microbial diversity analysis</title>
<p>Sequencing results of the rhizosphere soil bacterial community at different planting years showed (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>) that a total of 4488 OTUs were detected in all samples, and 4454 were obtained after rarefaction. An average of 1767, 2767, 1927, and 1522 OTUs were detected in T5, T20, T30, and T40, respectively (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S1</bold>
</xref>). There were 1100 OTUs common to the four planting years, accounting for 22.70% of the total OTUs. Further analysis found that 227, 851, 206, and 107 OTUs were specific to T5, T20, T30, and T40, respectively, accounting for 5.10%, 19.11%, 4.63%, and 2.40% of the total OTUs, respectively. The &#x3b1;-diversity analysis found that the chao1 index showed an increase and then a decrease with increasing planting years, which was manifested as T20&gt;T30&gt;T5&gt;T40, with significant differences (<italic>p</italic>&lt;0.05) among all four planting years (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>). The Shannon index showed an increase and then a decrease with increasing planting years, as shown by T20&gt;T30&gt;T40&gt;T5, with significant differences (<italic>p</italic>&lt;0.05) in all four planting years (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4C</bold>
</xref>). The Simpson index showed an increase followed by a decrease and then an increase with the increase in planting years, which was manifested as T20&gt;T40&gt;T30&gt;T5, where T20 was the largest and significantly higher than the other planting years (<italic>p</italic>&lt;0.05), and T40 was significantly higher than T30 and T5 (<italic>p</italic>&lt;0.05) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4D</bold>
</xref>). Based on &#x3b2;-diversity, analysis of the complexity of the soil bacterial community in the rhizosphere of pear trees using the NMDS method showed (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4E</bold>
</xref>) that the soil microorganisms of different planting years could be clearly differentiated (NMDS: stress = 0.0028, PERMANOVA, <italic>p</italic> &lt; 0.01). PCA analysis of the rhizosphere soil bacterial community of pear trees showed (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4F</bold>
</xref>) that the two principal components effectively differentiated between the four planting years, and their overall contribution was 64.84%. It can be seen that the planting year had a significant effect on the richness and community structure of the rhizosphere soil bacterial community of pear trees.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Rhizosphere soil microbial diversity of pear trees with different planting years. T5: 5 planting year, T20: 20 planting year, T30: 30 planting year, T40: 40 planting year. <bold>(A)</bold> Analysis of the number and similarity of OTUs detected in the rhizosphere soils of pear trees with different planting years; <bold>(B)</bold>&#xa0;Analysis of the chao1 diversity index of rhizosphere soil OTUs of pear trees with different planting years; <bold>(C)</bold> Analysis of the Shannon index of rhizosphere soil OTUs of pear trees with different planting years; <bold>(D)</bold> Analysis of the simpson diversity index of rhizosphere soil OTUs of pear trees with different planting years; <bold>(E)</bold> NMDS analysis of the &#x3b2;-diversity index of rhizosphere soil OTUs of pear trees with different planting years; <bold>(F)</bold> PCA analysis of rhizosphere soil OTUs of pear trees with different planting years. Different lowercase letters represent significant differences at <italic>p</italic> &lt; 0.05.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frmbi-03-1381270-g004.tif"/>
</fig>
</sec>
<sec id="s3_5">
<label>3.5</label>
<title>Screening for key microorganisms</title>
<p>Based on the abundance of rhizosphere soil bacterial OTUs, the OPLS-DA model was used to screen for key bacteria that varied significantly between planting years (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>). The results showed that the OPLS-DA model for rhizosphere soil bacteria of pear trees at different planting years had a goodness of fit R<sup>2</sup>Y value of 0.999 (<italic>p</italic>&#xa0;&lt;&#xa0;0.005) and a predictability Q<sup>2</sup> value of 0.963 (<italic>p</italic> &lt; 0.005) (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>). It can be seen that the R<sup>2</sup>Y and Q<sup>2</sup> values of the model have reached a significant level, and the model has a good fit and high credibility for further analysis. The scores of the OPLS-DA plot showed (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>) that OPLS-DA effectively distinguished samples from different planting years in different regions. S-plot analysis showed (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>) that there were 2193 key OTUs (VIP &gt;1) that distinguished between samples from different planting years. Significant differences were observed in rhizosphere soil bacteria of pear trees in different planting years (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S2</bold>
</xref>). Based on the obtained key OTUs, the corresponding bacteria were matched and categorized for analysis (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5D</bold>
</xref>). After removing the mismatched bacteria (others), the remaining bacteria can be categorized into 11 genera including <italic>Bradyrhizobium</italic>, <italic>Burkholderia-Paraburkholderia</italic>, <italic>Acidibacter</italic>, <italic>Dyella</italic>, <italic>Acidothermus</italic>, <italic>Candidatus_Solibacter</italic>, <italic>Variibacter</italic>, <italic>Rhodanobacter</italic>, <italic>Mizugakiibacter</italic>, <italic>Bryobacter</italic>, and <italic>Rhizomicrobium</italic>, with which they correspond to 10 phyla respectively Proteobacteria, Chloroflexi, Acidobacteria, Actinobacteria, Firmicutes, Bacteroidetes, Planctomycetes, Gemmatimonadetes and Verrucomicrobia. With the increase of planting years, at the genus level, the relative abundance of <italic>Bradyrhizobium</italic> declined at the peak fruiting period (T20 and T30), the relative abundance of <italic>Acidothermus</italic> increased, and there was no pattern of change for other bacteria. At the phylum level, the relative abundance of Acidobacteria, Gemmatimonadetes, and Verrucomicrobia increased during the peak fruiting period. It can be found that the relative abundance of rhizosphere soil bacteria changed significantly between planting years, which may affect the fruit quality of pear trees.</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Screening of key differentiating bacteria in rhizosphere soil of pear trees with different planting years. T5: 5 planting year, T20: 20 planting year, T30: 30 planting year, T40: 40 planting year; <bold>(A)</bold> Test plot of OPLS-DA model for rhizosphere soils of pear trees with different planting years; <bold>(B)</bold> Scores OPLS-DA plot for analysis of within- and between-group differences in rhizosphere soils of pear trees with different planting years; <bold>(C)</bold> OPLS-DA S-Plot for screening of key differential OTUs in rhizosphere soils of pear trees with different planting years, Green indicates that the VIP absolute value is less than 1, and red indicates that the vip absolute value is greater than 1. <bold>(D)</bold> Bubble map analysis of key differentiating bacteria in rhizosphere soil of pear trees with different planting years.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frmbi-03-1381270-g005.tif"/>
</fig>
</sec>
<sec id="s3_6">
<label>3.6</label>
<title>Interaction analysis</title>
<p>On the basis of these analysis, the interactions of key microbial genera of rhizosphere soils with quality index contents and soil enzyme activities of pear trees were further analyzed. Redundancy analysis of key soil microbial genera and pear quality indexes showed (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6A</bold>
</xref>) that both sucrose and reducing sugar were positively correlated with T20 and T30, ascorbic acid was positively correlated with T40, and total acid was positively correlated with T5. Redundancy analysis of key microbial genera and soil enzymes showed (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>) that T20 was positively correlated with protease and phosphomonoesterase, T30 was positively correlated with polyphenol oxidase and urease, and T40 was positively correlated with sucrase. It can be seen that significant changes in soil bacterial community abundance occurred when pear trees entered the peak fruiting period, which increased soil enzyme activity and promoted the formation of fruit quality.</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Interaction analysis of key genera of microorganisms with quality index of pear and soil enzyme. T5, 5 planting year; T20, 20 planting year; T30, 30 planting year; T40, 40 planting year; SA, sucrase; PA, protease; POA, polyphenol oxidase; PSA, phosphomonoesterase; UA, urease; SU, sugar; RS, Reducing sugar; VC, vitamin C; TA, total acid. <bold>(A)</bold> Redundancy analysis of key genera of microorganisms with quality index of pear; <bold>(B)</bold> Redundancy analysis of key genera of microorganisms with rhizosphere soil enzyme of pear tree.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frmbi-03-1381270-g006.tif"/>
</fig>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<sec id="s4_1">
<label>4.1</label>
<title>Quality of pears of different planting years</title>
<p>Pear is an economically important fruit that is widely cultivated in China. At present, the influencing factors on pear quality formation mainly include cultivation and management methods, soil environment, and post-harvest storage (<xref ref-type="bibr" rid="B45">Zhang et&#xa0;al., 2020</xref>, <xref ref-type="bibr" rid="B44">2023</xref>; <xref ref-type="bibr" rid="B1">Adhikary et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B2">Adhikary et al., 2021b</xref>), while the effect of planting years on pear quality formation has rarely been reported. The results of this study showed (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>) that the sweetness (sucrose and reducing sugar) of pears tended to increase and then decrease with the increase of planting years, and the acidity of pears was highest in young age. <xref ref-type="bibr" rid="B3">Ahmed and Dennis (1992)</xref> found that the fruit of young trees contains higher levels of anti-aging hormones (growth hormones and gibberellins), which may delay the ripening process and prevent the conversion of organic acids in large quantities, and as a result, the fruit acidity of young trees is higher than that of fruit trees of other ages.</p>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>Rhizosphere soil enzymes of pear trees of different planting years</title>
<p>Soil enzymes play an important role in maintaining soil ecology and health. Proteases play an important role in soil nitrogen transformation and plant nitrogen nutrition, phosphomonoesterase catalyzes the production of free phosphate groups by breaking the monoester bond in phosphate monoester compounds, urease specifically catalyzes urea hydrolysis to release ammonia and carbon dioxide, sucrase plays an important role in increasing soil labile nutrients, and polyphenol oxidase oxidizes soil aromatic compounds, thus facilitating their cycling (<xref ref-type="bibr" rid="B27">Neemisha and Sharma, 2022</xref>). <xref ref-type="bibr" rid="B46">Zhao et&#xa0;al. (2023)</xref> showed that soil phosphatase activity increased significantly and then decreased with the increase in the number of years of planting tomato in the facility. <xref ref-type="bibr" rid="B47">Zydlik et&#xa0;al. (2023)</xref> showed that adding biochar to apple orchards could increase soil protease activity and improve the soil environment. <xref ref-type="bibr" rid="B33">Ren et&#xa0;al. (2021)</xref> showed that partial replacement of chemical fertilizers with organic fertilizers could increase rhizosphere soil urease, sucrase, and phosphatase activities in maize. In this study, rhizosphere soil protease, urease and phosphatase activities of pear trees were significantly increased during the peak fruiting season (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>), which was beneficial for soil nutrient cycling. <xref ref-type="bibr" rid="B24">Matocha et&#xa0;al. (2004)</xref> reported that the application of chemical fertilizers inhibited polyphenol oxidase activity in agricultural soils. The results of this study also revealed a decreasing trend in polyphenol oxidase activity with increasing planting years, which may be due to the accumulation of chemical fertilizers in soils cultivated for many years, thus inhibiting polyphenol oxidase activity. Correlation results showed that polyphenol oxidase, urease and phosphatase activities were positively correlated with the quality indexes of pears (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>), indicating that soil enzyme activities were closely related to the quality of pears.</p>
</sec>
<sec id="s4_3">
<label>4.3</label>
<title>Microbial diversity of rhizosphere soils of pear trees of different planting years</title>
<p>Bacteria in the rhizosphere soil of plants have a profound effect on their growth, nutrient uptake, and health (<xref ref-type="bibr" rid="B28">Ole&#x144;ska et&#xa0;al., 2020</xref>). <xref ref-type="bibr" rid="B38">Wan et&#xa0;al. (2019)</xref> showed that crop yield declines in acidic soils may be related to the attenuation of the function of the rhizosphere bacterial community. <xref ref-type="bibr" rid="B34">Ren et&#xa0;al. (2020)</xref> investigated the effects of long-term continuous nitrogen application on wheat yield and rhizosphere soil microorganisms and showed that long-term continuous nitrogen application reduces the number and diversity of OTUs of bacteria, affects soil nutrient cycling, and ultimately leads to reduced wheat yield. Rhizosphere soil microorganisms of plants are highly sensitive and respond rapidly to external changes in the environment, especially with changes in the soil environment, but fewer studies have been reported on the relationship between different planting years and rhizosphere microbial communities of fruit trees. <xref ref-type="bibr" rid="B32">Qiang et&#xa0;al. (2020)</xref> analyzed soil microbial communities in citrus orchards with different planting years and showed that planting years significantly affected the community composition of soil microorganisms. This study showed that rhizosphere soil microbial diversity of pear trees first increased and then decreased with increasing planting years (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). This is consistent with <xref ref-type="bibr" rid="B29">Pang et&#xa0;al. (2024)</xref> results that the utilization rate of carbon source by rhizosphere soil microorganisms of pear trees also increases first and then decreases with increasing planting years. <italic>Bradyrhizobium</italic> is closely related to plant nitrogen fixation and can increase plant nitrogen fixation capacity (<xref ref-type="bibr" rid="B4">Akley et&#xa0;al., 2022</xref>). It may be that pear trees are not part of the legume family, which is not conducive to the propagation of <italic>Bradyrhizobium</italic>, and that the relative abundance of other microorganisms increases and the relative abundance of <italic>Bradyrhizobium</italic> decreases during the peak fruiting period. <italic>Acidothermus</italic> can grow under acidic conditions and degrade plant residues (<xref ref-type="bibr" rid="B20">Kim et&#xa0;al., 2016</xref>). <italic>Acidothermus</italic> aggregation promotes increases in soil organic matter and magnesium, as well as available nitrogen and calcium (<xref ref-type="bibr" rid="B36">Steven et&#xa0;al., 2021</xref>). When pear trees entered the peak fruiting period, their secretion and apomixis increased, which was conducive to the propagation of <italic>Acidothermus</italic>, increasing nutrients in the soil, and favoring the formation of fruit quality (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5D</bold>
</xref>). RDA analysis showed that the aggregation of soil microorganisms in the rhizosphere of pear trees facilitated phosphatase and protease activities during the peak fruiting period, and at the same time promoted sugar accumulation in fruits.</p>
</sec>
</sec>
<sec id="s5" sec-type="conclusions">
<label>5</label>
<title>Conclusions</title>
<p>There were significant differences in the quality of pears between different planting years, with the sweetest pears at the peak fruiting period. The rhizosphere soil enzyme activities of pear trees changed with the increase of planting years, and phosphatase, urease and protease activities were significantly increased during the peak fruiting period. The microbial diversity of rhizosphere soil also changed with the increase of planting years, and the microbial diversity and the number of OTUs were higher in the peak fruiting period than in other periods. The enrichment of <italic>Acidothermus</italic> during the peak fruiting period favored nutrient cycling in rhizosphere soil of pear trees, enhanced soil enzyme activity, and promoted pear quality formation (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>). It is suggested that pear quality can be improved by regulating microorganisms and enzyme activity during pear planting.</p>
<fig id="f7" position="float">
<label>Figure&#xa0;7</label>
<caption>
<p>Effect of planting years on soil enzyme and microbial diversity and fruit quality of pear trees.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frmbi-03-1381270-g007.tif"/>
</fig>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: <uri xlink:href="https://www.ncbi.nlm.nih.gov/">https://www.ncbi.nlm.nih.gov/</uri>, PRJNA1055603.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>XP: Conceptualization, Data curation, Formal analysis, Methodology, Software, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing. MJ: Investigation, Methodology, Software, Validation, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing. YZ: Conceptualization, Methodology, Software, Writing &#x2013; original draft. MC: Formal analysis, Methodology, Writing &#x2013; original draft. PM: Data curation, Methodology, Software, Writing &#x2013; original draft. WC: Conceptualization, Investigation, Software, Writing &#x2013; original draft. ZZ: Methodology, Software, Writing &#x2013; original draft. QZ: Funding acquisition, Supervision, Writing &#x2013; original draft. JY: Funding acquisition, Resources, Writing &#x2013;&#xa0;original draft. JL: Funding acquisition, Investigation, Writing &#x2013; original draft. HW: Funding acquisition, Software, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing. XJ: Conceptualization, Funding acquisition, Resources, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. the Scientific Research Project of Introducing Talents, Wuyi University (YJ201909); Innovation and Entrepreneurship Training Program for College Students (S202210397033); Construction of first-class undergraduate specialty (tea science) in Fujian Province (SJZY2019004); Fujian Province Young and Middle-aged Teacher Education Re-search Project (Science and Technology) (JAT200664), Faculty and students co-creation team of Wuyi University (2021-SSTD-05); Special for science and technology commissioner of Nanping City (NP2021KTS05); Fujian Key Laboratory of Plant Nutrition and Fertilizer Fund (grant no.2022PNFKL22).</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/frmbi.2024.1381270/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/frmbi.2024.1381270/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Table_1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document"/>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Adhikary</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Gill</surname> <given-names>P. P. S.</given-names>
</name>
<name>
<surname>Jawandha</surname> <given-names>S. K.</given-names>
</name>
<name>
<surname>Bhardwaj</surname> <given-names>R. D.</given-names>
</name>
<name>
<surname>Anurag</surname> <given-names>R. K.</given-names>
</name>
</person-group> (<year>2021</year>a). <article-title>Efficacy of postharvest sodium nitroprusside application to extend storability by regulating physico-chemical quality of pear fruit</article-title>. <source>Food Chem.</source> <volume>346</volume>, <fpage>128934</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.foodchem.2020.128934</pub-id>
</citation>
</ref>
<ref id="B2">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Adhikary</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Gill</surname> <given-names>P. S.</given-names>
</name>
<name>
<surname>Jawandha</surname> <given-names>S. K.</given-names>
</name>
<name>
<surname>Bhardwaj</surname> <given-names>R. D.</given-names>
</name>
<name>
<surname>Anurag</surname> <given-names>R. K.</given-names>
</name>
</person-group> (<year>2021</year>b). <article-title>Browning and quality management of pear fruit by salicylic acid treatment during low temperature storage</article-title>. <source>J. Sci. Food Agric.</source> <volume>101</volume>, <fpage>853</fpage>&#x2013;<lpage>862</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1002/jsfa.10692</pub-id>
</citation>
</ref>
<ref id="B3">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ahmed</surname> <given-names>I.</given-names>
</name>
<name>
<surname>Dennis</surname> <given-names>F. G.</given-names>
</name>
</person-group> (<year>1992</year>). <article-title>Effect of apple tree age and flower position on cell size and cell number</article-title>. <source>Pak. J. Agric. Res.</source> <volume>13</volume>, <fpage>161</fpage>&#x2013;<lpage>164</lpage>.</citation>
</ref>
<ref id="B4">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Akley</surname> <given-names>E. K.</given-names>
</name>
<name>
<surname>Rice</surname> <given-names>C. W.</given-names>
</name>
<name>
<surname>Adotey</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Ampim</surname> <given-names>P. A.</given-names>
</name>
<name>
<surname>Vara Prasad</surname> <given-names>P. V.</given-names>
</name>
<name>
<surname>Owusu Danquah</surname> <given-names>E.</given-names>
</name>
<etal/>
</person-group>. (<year>2022</year>). <article-title>Residual <italic>Bradyrhizobium</italic> inoculation effects on soybean performance and selected soil health parameters</article-title>. <source>Agron. J.</source> <volume>114</volume>, <fpage>1627</fpage>&#x2013;<lpage>1641</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1002/agj2.21037</pub-id>
</citation>
</ref>
<ref id="B5">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Arafat</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Wei</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Jiang</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Chen</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Saqib</surname> <given-names>H. S.</given-names>
</name>
<name>
<surname>Lin</surname> <given-names>S.</given-names>
</name>
<etal/>
</person-group>. (<year>2017</year>). <article-title>Spatial distribution patterns of root-associated bacterial communities mediated by root exudates in different aged ratooning tea monoculture systems</article-title>. <source>Int. J. Mol. Sci.</source> <volume>18</volume>, <fpage>1727</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/ijms18081727</pub-id>
</citation>
</ref>
<ref id="B6">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chen</surname> <given-names>X. M.</given-names>
</name>
<name>
<surname>Zhang</surname> <given-names>Q.</given-names>
</name>
<name>
<surname>Zeng</surname> <given-names>S. M.</given-names>
</name>
<name>
<surname>Chen</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Guo</surname> <given-names>Y. Y.</given-names>
</name>
<name>
<surname>Huang</surname> <given-names>X. Z.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Rhizosphere soil affects pear fruit quality under rain-shelter cultivation</article-title>. <source>Can. J. Plant Sci.</source> <volume>100</volume>, <fpage>683</fpage>&#x2013;<lpage>691</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1139/cjps-2018-0249</pub-id>
</citation>
</ref>
<ref id="B7">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Doornbos</surname> <given-names>R. F.</given-names>
</name>
<name>
<surname>van Loon</surname> <given-names>L. C.</given-names>
</name>
<name>
<surname>Bakker</surname> <given-names>P. A.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Impact of root exudates and plant defense signaling on bacterial communities in the rhizosphere. A review</article-title>. <source>Agron. Sustain. Dev.</source> <volume>32</volume>, <fpage>227</fpage>&#x2013;<lpage>243</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1007/s13593-011-0028-y</pub-id>
</citation>
</ref>
<ref id="B8">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Draga</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Palumbo</surname> <given-names>F.</given-names>
</name>
<name>
<surname>Miracolo Barbagiovanni</surname> <given-names>I.</given-names>
</name>
<name>
<surname>Pati</surname> <given-names>F.</given-names>
</name>
<name>
<surname>Barcaccia</surname> <given-names>G.</given-names>
</name>
</person-group> (<year>2023</year>). <article-title>Management of genetic erosion: The (successful) case study of the pear (<italic>Pyrus communis</italic> L.) germplasm of the Lazio region (Italy)</article-title>. <source>Front. Plant Sci.</source> <volume>13</volume>, <elocation-id>1099420</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fpls.2022.1099420</pub-id>
</citation>
</ref>
<ref id="B9">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Edgar</surname> <given-names>R. C.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>UPARSE: highly accurate OTU sequences from microbial amplicon reads</article-title>. <source>Nat. Methods</source> <volume>10</volume>, <fpage>996</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/nmeth.2604</pub-id>
</citation>
</ref>
<ref id="B10">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fadrosh</surname> <given-names>D. W.</given-names>
</name>
<name>
<surname>Ma</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Gajer</surname> <given-names>P.</given-names>
</name>
<name>
<surname>Sengamalay</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Ott</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Brotman</surname> <given-names>R. M.</given-names>
</name>
<etal/>
</person-group>. (<year>2014</year>). <article-title>An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform</article-title>. <source>Microbiome</source> <volume>2</volume>, <fpage>1</fpage>&#x2013;<lpage>7</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1186/2049-2618-2-6</pub-id>
</citation>
</ref>
<ref id="B11">
<citation citation-type="book">
<person-group person-group-type="author">
<collab>GAQS</collab>
</person-group> (<year>2008</year>). &#x201c;<article-title>GBT12456-2008, Determination of total acid in foods</article-title>,&#x201d; in <source>General Administration of Quality Supervision, Inspection and Quarantine of the People&#x2019;s Republic of China</source>. (<publisher-loc>Beijing</publisher-loc>: <publisher-name>China Standards Press</publisher-name>).</citation>
</ref>
<ref id="B12">
<citation citation-type="book">
<person-group person-group-type="author">
<collab>GAQS</collab>
</person-group> (<year>2016</year>a). &#x201c;<article-title>GBT5009.7-2016, Determination of reducing sugar in foods</article-title>,&#x201d; in <source>General Administration of Quality Supervision, Inspection and Quarantine of the People&#x2019;s Republic of China</source>. (<publisher-loc>Beijing</publisher-loc>: <publisher-name>China Standards Press</publisher-name>).</citation>
</ref>
<ref id="B13">
<citation citation-type="book">
<person-group person-group-type="author">
<collab>GAQS</collab>
</person-group> (<year>2016</year>b). &#x201c;<article-title>GBT5009.8-2016, Determination of fructose, glucose, sucrose, maltose, lactose in foods</article-title>,&#x201d; in <source>General Administration of Quality Supervision, Inspection and Quarantine of the People&#x2019;s Republic of China</source>. (<publisher-loc>Beijing</publisher-loc>: <publisher-name>China Standards Press</publisher-name>).</citation>
</ref>
<ref id="B14">
<citation citation-type="book">
<person-group person-group-type="author">
<collab>GAQS</collab>
</person-group> (<year>2016</year>c). &#x201c;<article-title>GBT5009.86-2016, Determination of ascorbic acid in foods</article-title>,&#x201d; in <source>General Administration of Quality Supervision, Inspection and Quarantine of the People&#x2019;s Republic of China</source>. (<publisher-loc>Beijing</publisher-loc>: <publisher-name>China Standards Press</publisher-name>).</citation>
</ref>
<ref id="B15">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>He</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Li</surname> <given-names>L.</given-names>
</name>
<name>
<surname>Xu</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Mu</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Xie</surname> <given-names>Z.</given-names>
</name>
<name>
<surname>Gu</surname> <given-names>C.</given-names>
</name>
<etal/>
</person-group>. (<year>2022</year>). <article-title>Identification of S-genotypes and a novel S-RNase in 84 native Chinese pearaccessions</article-title>. <source>Hortic. Plant J.</source> <volume>8</volume>, <fpage>713</fpage>&#x2013;<lpage>726</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.hpj.2022.02.002</pub-id>
</citation>
</ref>
<ref id="B16">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Jami</surname> <given-names>E.</given-names>
</name>
<name>
<surname>Israel</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Kotser</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Mizrahi</surname> <given-names>I.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Exploring the bovine rumen bacterial community from birth to adulthood</article-title>. <source>ISME J.</source> <volume>7</volume>, <fpage>1069</fpage>&#x2013;<lpage>1079</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ismej.2013.2</pub-id>
</citation>
</ref>
<ref id="B17">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Jiang</surname> <given-names>Y. J.</given-names>
</name>
<name>
<surname>Li</surname> <given-names>S. Z.</given-names>
</name>
<name>
<surname>Li</surname> <given-names>R. P.</given-names>
</name>
<name>
<surname>Zhang</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>Y. H.</given-names>
</name>
<name>
<surname>Lv</surname> <given-names>L. F.</given-names>
</name>
<etal/>
</person-group>. (<year>2017</year>). <article-title>Plant cultivars imprint the rhizosphere bacterial community composition and association networks</article-title>. <source>Soil Biol. Biochem.</source> <volume>109</volume>, <fpage>145</fpage>&#x2013;<lpage>155</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.soilbio.2017.02.010</pub-id>
</citation>
</ref>
<ref id="B18">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Jiang</surname> <given-names>X. T.</given-names>
</name>
<name>
<surname>Peng</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Deng</surname> <given-names>G. H.</given-names>
</name>
<name>
<surname>Sheng</surname> <given-names>H. F.</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Zhou</surname> <given-names>H. W.</given-names>
</name>
<etal/>
</person-group>. (<year>2013</year>). <article-title>Illumina sequencing of 16S rRNA tag revealed spatial variations of bacterial communities in a mangrove wetland</article-title>. <source>Microb. Ecol.</source> <volume>66</volume>, <fpage>96</fpage>&#x2013;<lpage>104</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1007/s00248-013-0238-8</pub-id>
</citation>
</ref>
<ref id="B19">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kang</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>An</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Ma</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Zeng</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Jiang</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Wu</surname> <given-names>W.</given-names>
</name>
<etal/>
</person-group>. (<year>2021</year>). <article-title>Organic amendments alleviate early defoliation and increase fruit yield by altering assembly patterns and of microbial communities and enzymatic activities in sandy pear (<italic>Pyrus pyrifolia</italic>)</article-title>. <source>Amb Express</source> <volume>11</volume>, <fpage>1</fpage>&#x2013;<lpage>15</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1186/s13568-021-01322-5</pub-id>
</citation>
</ref>
<ref id="B20">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kim</surname> <given-names>S. K.</given-names>
</name>
<name>
<surname>Chung</surname> <given-names>D.</given-names>
</name>
<name>
<surname>Himmel</surname> <given-names>M. E.</given-names>
</name>
<name>
<surname>Bomble</surname> <given-names>Y. J.</given-names>
</name>
<name>
<surname>Westpheling</surname> <given-names>J.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Heterologous expression of family 10 xylanases from <italic>Acidothermus cellulolyticus</italic> enhances the exoproteome of Caldicellulosiruptor bescii and growth on xylan substrates</article-title>. <source>Biotechnol. Biofuels</source> <volume>9</volume>, <fpage>1</fpage>&#x2013;<lpage>10</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1186/s13068-016-0588-9</pub-id>
</citation>
</ref>
<ref id="B21">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Li</surname> <given-names>Z. G.</given-names>
</name>
<name>
<surname>Luo</surname> <given-names>Y. M.</given-names>
</name>
<name>
<surname>Teng</surname> <given-names>Y.</given-names>
</name>
</person-group> (<year>2008</year>). <source>Research Methods for Soil and Environmental Microorganisms</source> (<publisher-loc>Beijing</publisher-loc>: <publisher-name>China Science Press</publisher-name>).</citation>
</ref>
<ref id="B22">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Li</surname> <given-names>S. C.</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>Y. B.</given-names>
</name>
<name>
<surname>Wu</surname> <given-names>F.</given-names>
</name>
<name>
<surname>Xiao</surname> <given-names>L. H.</given-names>
</name>
<name>
<surname>Peng</surname> <given-names>W. W.</given-names>
</name>
<name>
<surname>Xiang</surname> <given-names>M. L.</given-names>
</name>
<etal/>
</person-group>. (<year>2022</year>). <article-title>First report of pyrus pyrifolia &#x2018;Cuiguan&#x2019; fruit rot caused by <italic>Monilinia fructicola</italic> in southern China</article-title>. <source>Plant Dis.</source> <volume>106</volume>, <fpage>327</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1094/PDIS-05-21-1076-PDN</pub-id>
</citation>
</ref>
<ref id="B23">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liu</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Bai</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Li</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Zhang</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Wu</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Shi</surname> <given-names>Y.</given-names>
</name>
<etal/>
</person-group>. (<year>2023</year>). <article-title>Evaluating the combined effects of water and fertilizer coupling schemes on pear vegetative growth and quality in north China</article-title>. <source>Agronomy</source> <volume>13</volume>, <fpage>867</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/agronomy13030867</pub-id>
</citation>
</ref>
<ref id="B24">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Matocha</surname> <given-names>C. J.</given-names>
</name>
<name>
<surname>Haszler</surname> <given-names>G. R.</given-names>
</name>
<name>
<surname>Grove</surname> <given-names>J. H.</given-names>
</name>
</person-group> (<year>2004</year>). <article-title>Nitrogen fertilization suppresses soil phenol oxidase enzyme activity in no-tillage systems</article-title>. <source>Soil Sci.</source> <volume>169</volume>, <fpage>708</fpage>&#x2013;<lpage>714</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1097/01.ss.0000146023.53936.6c</pub-id>
</citation>
</ref>
<ref id="B25">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Mendes</surname> <given-names>L. W.</given-names>
</name>
<name>
<surname>Kuramae</surname> <given-names>E. E.</given-names>
</name>
<name>
<surname>Navarrete</surname> <given-names>A. A.</given-names>
</name>
<name>
<surname>van Veen</surname> <given-names>J. A.</given-names>
</name>
<name>
<surname>Tsai</surname> <given-names>S. M.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Taxonomical and functional microbial community selection in soybean rhizosphere</article-title>. <source>ISME J.</source> <volume>8</volume>, <fpage>1577</fpage>&#x2013;<lpage>1587</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ismej.2014.17</pub-id>
</citation>
</ref>
<ref id="B26">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Musacchi</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Iglesias</surname> <given-names>I.</given-names>
</name>
<name>
<surname>Neri</surname> <given-names>D.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Training systems and sustainable orchard management for European pear (<italic>Pyrus communis</italic> L.) in the Mediterranean area: A review</article-title>. <source>Agronomy</source> <volume>11</volume>, <fpage>1765</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/agronomy11091765</pub-id>
</citation>
</ref>
<ref id="B27">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Neemisha</surname>
</name>
<name>
<surname>Sharma</surname> <given-names>S.</given-names>
</name>
</person-group> (<year>2022</year>). &#x201c;<article-title>Soil enzymes and their role in nutrient cycling</article-title>,&#x201d; in <source>Structure and Functions of Pedosphere</source> (<publisher-name>Springer Nature Singapore</publisher-name>, <publisher-loc>Singapore</publisher-loc>).</citation>
</ref>
<ref id="B28">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ole&#x144;ska</surname> <given-names>E.</given-names>
</name>
<name>
<surname>Ma&#x142;ek</surname> <given-names>W.</given-names>
</name>
<name>
<surname>W&#xf3;jcik</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Swiecicka</surname> <given-names>I.</given-names>
</name>
<name>
<surname>Thijs</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Vangronsveld</surname> <given-names>J.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Beneficial features of plant growth-promoting rhizobacteria for improving plant growth and health in challenging conditions: A methodical review</article-title>. <source>Sci. Total Environ.</source> <volume>743</volume>, <fpage>140682</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.scitotenv.2020.140682</pub-id>
</citation>
</ref>
<ref id="B29">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pang</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Chen</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Miao</surname> <given-names>P.</given-names>
</name>
<name>
<surname>Cheng</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Zhou</surname> <given-names>Z.</given-names>
</name>
<name>
<surname>Zhang</surname> <given-names>Y.</given-names>
</name>
<etal/>
</person-group>. (<year>2024</year>). <article-title>Effects of different planting years on soil physicochemical indexes, microbial functional diversity and fruit quality of pear trees</article-title>. <source>Agriculture</source> <volume>14</volume>, <fpage>226</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/agriculture14020226</pub-id>
</citation>
</ref>
<ref id="B30">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pang</surname> <given-names>Z.</given-names>
</name>
<name>
<surname>Dong</surname> <given-names>F.</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>Q.</given-names>
</name>
<name>
<surname>Lin</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Hu</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Yuan</surname> <given-names>Z.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Soil metagenomics reveals effects of continuous sugarcane cropping on the structure and functional pathway of rhizospheric microbial community</article-title>. <source>Front. Microbiol.</source> <volume>12</volume>, <elocation-id>627569</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmicb.2021.627569</pub-id>
</citation>
</ref>
<ref id="B31">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pruesse</surname> <given-names>E.</given-names>
</name>
<name>
<surname>Quast</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Knittel</surname> <given-names>K.</given-names>
</name>
<name>
<surname>Fuchs</surname> <given-names>B. M.</given-names>
</name>
<name>
<surname>Ludwig</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Peplies</surname> <given-names>J.</given-names>
</name>
<etal/>
</person-group>. (<year>2007</year>). <article-title>SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB</article-title>. <source>Nucleic Acids Res.</source> <volume>35</volume>, <fpage>7188</fpage>&#x2013;<lpage>7196</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/nar/gkm864</pub-id>
</citation>
</ref>
<ref id="B32">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Qiang</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Yang</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Qi</surname> <given-names>K.</given-names>
</name>
<name>
<surname>Yang</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Pang</surname> <given-names>X.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Effects of reclamation age on soil microbial communities and enzymatic activities in the sloping citrus orchards of southwestern China</article-title>. <source>Appl. Soil Ecol.</source> <volume>102</volume>, <fpage>103566</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.apsoil.2020.103566</pub-id>
</citation>
</ref>
<ref id="B33">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ren</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Yang</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Yang</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Li</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Xia</surname> <given-names>Q.</given-names>
</name>
<etal/>
</person-group>. (<year>2021</year>). <article-title>Rhizosphere soil properties, microbial community, and enzyme activities: Short-term responses to partial substitution of chemical fertilizer with organic manure</article-title>. <source>J. Environ. Manage.</source> <volume>299</volume>, <fpage>113650</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jenvman.2021.113650</pub-id>
</citation>
</ref>
<ref id="B34">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ren</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Ye</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Zhao</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Huang</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Fu</surname> <given-names>W.</given-names>
</name>
<etal/>
</person-group>. (<year>2020</year>). <article-title>Effects of continuous nitrogen fertilizer application on the diversity and composition of rhizosphere soil bacteria</article-title>. <source>Front. Microbiol.</source> <volume>11</volume>, <elocation-id>1948</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmicb.2020.01948</pub-id>
</citation>
</ref>
<ref id="B35">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Samuel</surname> <given-names>A. D.</given-names>
</name>
<name>
<surname>Domuta</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Ciobanu</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Sandor</surname> <given-names>M.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>Field management effects on soil enzyme activities</article-title>. <source>Rom. Agric. Res.</source> <volume>28</volume>, <fpage>61</fpage>&#x2013;<lpage>68</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/S0038-0717(99)00051-6</pub-id>
</citation>
</ref>
<ref id="B36">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Steven</surname> <given-names>B.</given-names>
</name>
<name>
<surname>LaReau</surname> <given-names>J. C.</given-names>
</name>
<name>
<surname>Taerum</surname> <given-names>S. J.</given-names>
</name>
<name>
<surname>Zuverza-Mena</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Cowles</surname> <given-names>R. S.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>What&#x2019;s under the Christmas tree? A soil sulfur amendment lowers soil pH and alters fir tree rhizosphere bacterial and eukaryotic communities, their interactions, and functional traits</article-title>. <source>Microbiol. Spectr.</source> <volume>9</volume>, <elocation-id>e0016621</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1128/Spectrum.00166-21</pub-id>
</citation>
</ref>
<ref id="B37">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sun</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Ye</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Ma</surname> <given-names>Q.</given-names>
</name>
<name>
<surname>Guan</surname> <given-names>Q.</given-names>
</name>
<name>
<surname>Jones</surname> <given-names>D. L.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Variation in enzyme activities involved in carbon and nitrogen cycling in rhizosphere and bulk soil after organic mulching</article-title>. <source>Rhizosphere</source> <volume>19</volume>, <fpage>100376</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.rhisph.2021.100376</pub-id>
</citation>
</ref>
<ref id="B38">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wan</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Tan</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Qin</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>He</surname> <given-names>H.</given-names>
</name>
<name>
<surname>Wu</surname> <given-names>H.</given-names>
</name>
<etal/>
</person-group>. (<year>2019</year>). <article-title>Responses of the rhizosphere bacterial community in acidic crop soil to pH: Changes in diversity, composition, interaction, and function</article-title>. <source>Sci. Total Environ.</source> <volume>700</volume>, <fpage>134418</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.scitotenv.2019.134418</pub-id>
</citation>
</ref>
<ref id="B39">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wang</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Sheng</surname> <given-names>H. F.</given-names>
</name>
<name>
<surname>He</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Wu</surname> <given-names>J. Y.</given-names>
</name>
<name>
<surname>Jiang</surname> <given-names>Y. X.</given-names>
</name>
<name>
<surname>Tam</surname> <given-names>N. F. Y.</given-names>
</name>
<etal/>
</person-group>. (<year>2012</year>). <article-title>Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags</article-title>. <source>Appl. Environ. Microb.</source> <volume>78</volume>, <fpage>8264</fpage>&#x2013;<lpage>8271</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1128/AEM.01821-12</pub-id>
</citation>
</ref>
<ref id="B40">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wang</surname> <given-names>Z.</given-names>
</name>
<name>
<surname>Tian</surname> <given-names>H.</given-names>
</name>
<name>
<surname>Lei</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Megharaj</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Tan</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>F.</given-names>
</name>
<etal/>
</person-group>. (<year>2020</year>). <article-title>Soil enzyme kinetics indicate ecotoxicity of long-term arsenic pollution in the soil at field scale</article-title>. <source>Ecotox. Environ. Safe.</source> <volume>191</volume>, <fpage>110215</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.ecoenv.2020.110215</pub-id>
</citation>
</ref>
<ref id="B41">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Willis</surname> <given-names>A. D.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Rarefaction, alpha diversity, and statistics</article-title>. <source>Front. Microbiol.</source> <volume>10</volume>, <elocation-id>492464</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmicb.2019.02407</pub-id>
</citation>
</ref>
<ref id="B42">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yang</surname> <given-names>G.</given-names>
</name>
<name>
<surname>Zhou</surname> <given-names>D.</given-names>
</name>
<name>
<surname>Wan</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Xie</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Ma</surname> <given-names>C.</given-names>
</name>
<etal/>
</person-group>. (<year>2022</year>). <article-title>HPLC and high-throughput sequencing revealed higher tea-leaves quality, soil fertility and microbial community diversity in ancient tea plantations: compared with modern tea plantations</article-title>. <source>BMC Plant Biol.</source> <volume>22</volume>, <fpage>23</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1186/s12870-022-03633-6</pub-id>
</citation>
</ref>
<ref id="B43">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yao</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Rui</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Li</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Dai</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Bai</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Hedenec</surname> <given-names>P.</given-names>
</name>
<etal/>
</person-group>. (<year>2014</year>). <article-title>Rate-specific responses of prokaryotic diversity and structure to nitrogen deposition in the Leymus chinensis steppe</article-title>. <source>Soil Biol. Biochem.</source> <volume>79</volume>, <fpage>81</fpage>&#x2013;<lpage>90</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.soilbio.2014.09.009</pub-id>
</citation>
</ref>
<ref id="B44">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zhang</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Bai</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Chen</surname> <given-names>L.</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>H.</given-names>
</name>
<name>
<surname>Jin</surname> <given-names>Q.</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>L.</given-names>
</name>
<etal/>
</person-group>. (<year>2023</year>). <article-title>Comparative analysis of the quality in ripe fruits of cuiguan pear from different regions</article-title>. <source>Molecules</source> <volume>28</volume>, <fpage>1733</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/molecules28041733</pub-id>
</citation>
</ref>
<ref id="B45">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zhang</surname> <given-names>Q.</given-names>
</name>
<name>
<surname>Pang</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Chen</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Ye</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Lin</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Jia</surname> <given-names>X.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Rain-shelter cultivation influence rhizosphere bacterial community structure in pear and its relationship with fruit quality of pear and soil chemical properties</article-title>. <source>Sci. Hortic.</source> <volume>269</volume>, <fpage>109419</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.scienta.2020.109419</pub-id>
</citation>
</ref>
<ref id="B46">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zhao</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Song</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Zhang</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Jia</surname> <given-names>Z.</given-names>
</name>
<name>
<surname>Huang</surname> <given-names>Y.</given-names>
</name>
</person-group> (<year>2023</year>). <article-title>Effects of tomato planting years on soil physical and chemical properties and microbial communities</article-title>. <source>Environ. Sci.</source> <volume>44</volume>, <fpage>6982</fpage>&#x2013;<lpage>6991</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.13227/j.hjkx.202211147</pub-id>
</citation>
</ref>
<ref id="B47">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zydlik</surname> <given-names>Z.</given-names>
</name>
<name>
<surname>Zydlik</surname> <given-names>P.</given-names>
</name>
<name>
<surname>Jarosz</surname> <given-names>Z.</given-names>
</name>
<name>
<surname>Wieczorek</surname> <given-names>R.</given-names>
</name>
</person-group> (<year>2023</year>). <article-title>The use of organic additives for replanted soil in apple tree production in a fruit tree nursery</article-title>. <source>Agriculture</source> <volume>13</volume>, <fpage>973</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/agriculture13050973</pub-id>
</citation>
</ref>
</ref-list>
</back>
</article>